Multiple sequence alignment - TraesCS2A01G287600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G287600 chr2A 100.000 5311 0 0 1 5311 490666462 490661152 0.000000e+00 9808.0
1 TraesCS2A01G287600 chr2A 79.926 269 25 5 2814 3082 178159130 178159369 2.540000e-38 171.0
2 TraesCS2A01G287600 chr2A 85.556 90 6 1 3000 3089 425822109 425822027 2.630000e-13 87.9
3 TraesCS2A01G287600 chr2B 94.054 3128 84 38 49 3119 432560209 432557127 0.000000e+00 4652.0
4 TraesCS2A01G287600 chr2B 95.168 1842 52 14 3479 5311 432557138 432555325 0.000000e+00 2874.0
5 TraesCS2A01G287600 chr2B 98.391 373 3 3 3115 3485 281883711 281883340 0.000000e+00 652.0
6 TraesCS2A01G287600 chr2D 93.317 2843 85 45 49 2830 364170643 364167845 0.000000e+00 4100.0
7 TraesCS2A01G287600 chr2D 97.550 1837 36 6 3479 5311 364167361 364165530 0.000000e+00 3134.0
8 TraesCS2A01G287600 chr1B 99.725 364 0 1 3119 3481 426467834 426467471 0.000000e+00 665.0
9 TraesCS2A01G287600 chr1B 99.723 361 1 0 3119 3479 255253076 255253436 0.000000e+00 662.0
10 TraesCS2A01G287600 chr1B 95.745 141 6 0 2170 2310 119630065 119629925 1.490000e-55 228.0
11 TraesCS2A01G287600 chr6B 99.187 369 2 1 3119 3487 410235495 410235862 0.000000e+00 664.0
12 TraesCS2A01G287600 chr6B 95.745 141 6 0 2170 2310 174128593 174128453 1.490000e-55 228.0
13 TraesCS2A01G287600 chr1A 99.452 365 2 0 3119 3483 45800204 45799840 0.000000e+00 664.0
14 TraesCS2A01G287600 chr4B 99.723 361 1 0 3119 3479 37693476 37693116 0.000000e+00 662.0
15 TraesCS2A01G287600 chr4B 99.178 365 3 0 3119 3483 306604325 306604689 0.000000e+00 658.0
16 TraesCS2A01G287600 chr4B 85.449 646 61 22 2454 3091 552769258 552768638 4.480000e-180 641.0
17 TraesCS2A01G287600 chr4B 95.270 148 6 1 2164 2310 552769401 552769254 3.200000e-57 233.0
18 TraesCS2A01G287600 chr3B 98.660 373 3 2 3119 3489 353864607 353864979 0.000000e+00 660.0
19 TraesCS2A01G287600 chr7B 99.178 365 2 1 3119 3483 24403726 24403363 0.000000e+00 656.0
20 TraesCS2A01G287600 chr7B 95.918 147 5 1 2164 2310 418199118 418198973 2.470000e-58 237.0
21 TraesCS2A01G287600 chr7B 94.558 147 8 0 2164 2310 218529107 218529253 1.490000e-55 228.0
22 TraesCS2A01G287600 chr4A 85.581 645 62 21 2454 3091 660476980 660476360 0.000000e+00 647.0
23 TraesCS2A01G287600 chr4A 85.331 559 58 16 2454 3005 309474118 309474659 1.670000e-154 556.0
24 TraesCS2A01G287600 chr4A 83.842 557 71 12 2454 3005 350843896 350844438 3.670000e-141 512.0
25 TraesCS2A01G287600 chr4A 95.745 141 6 0 2170 2310 660477116 660476976 1.490000e-55 228.0
26 TraesCS2A01G287600 chr6D 85.404 644 67 15 2454 3091 38567432 38566810 1.250000e-180 643.0
27 TraesCS2A01G287600 chr7A 85.426 645 63 21 2454 3091 656726573 656727193 4.480000e-180 641.0
28 TraesCS2A01G287600 chr7A 94.558 147 7 1 2164 2310 221918071 221917926 5.350000e-55 226.0
29 TraesCS2A01G287600 chr3D 87.170 530 51 7 2559 3082 405520418 405520936 2.130000e-163 586.0
30 TraesCS2A01G287600 chr5A 81.818 297 37 12 1125 1416 623215683 623215399 3.200000e-57 233.0
31 TraesCS2A01G287600 chr5B 82.206 281 35 11 1138 1416 618476541 618476274 1.490000e-55 228.0
32 TraesCS2A01G287600 chr5D 83.607 244 34 4 1173 1416 498778577 498778340 1.920000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G287600 chr2A 490661152 490666462 5310 True 9808.0 9808 100.0000 1 5311 1 chr2A.!!$R2 5310
1 TraesCS2A01G287600 chr2B 432555325 432560209 4884 True 3763.0 4652 94.6110 49 5311 2 chr2B.!!$R2 5262
2 TraesCS2A01G287600 chr2D 364165530 364170643 5113 True 3617.0 4100 95.4335 49 5311 2 chr2D.!!$R1 5262
3 TraesCS2A01G287600 chr4B 552768638 552769401 763 True 437.0 641 90.3595 2164 3091 2 chr4B.!!$R2 927
4 TraesCS2A01G287600 chr4A 309474118 309474659 541 False 556.0 556 85.3310 2454 3005 1 chr4A.!!$F1 551
5 TraesCS2A01G287600 chr4A 350843896 350844438 542 False 512.0 512 83.8420 2454 3005 1 chr4A.!!$F2 551
6 TraesCS2A01G287600 chr4A 660476360 660477116 756 True 437.5 647 90.6630 2170 3091 2 chr4A.!!$R1 921
7 TraesCS2A01G287600 chr6D 38566810 38567432 622 True 643.0 643 85.4040 2454 3091 1 chr6D.!!$R1 637
8 TraesCS2A01G287600 chr7A 656726573 656727193 620 False 641.0 641 85.4260 2454 3091 1 chr7A.!!$F1 637
9 TraesCS2A01G287600 chr3D 405520418 405520936 518 False 586.0 586 87.1700 2559 3082 1 chr3D.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 408 0.532862 CGCGGATAACATGAGGCCTT 60.533 55.000 6.77 0.0 0.00 4.35 F
900 922 1.081092 CACCCTTCTCCTCCCTCCA 59.919 63.158 0.00 0.0 0.00 3.86 F
1590 1612 1.893801 GAGGAAGAGGACGAGGAAACA 59.106 52.381 0.00 0.0 0.00 2.83 F
3211 3494 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.0 36.69 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1752 1.131883 CTTCGCATGCAAGAAGGAAGG 59.868 52.381 21.2 2.2 39.94 3.46 R
1852 1911 1.541588 GATGCAGAAAAGGTCACACCC 59.458 52.381 0.0 0.0 39.75 4.61 R
3273 3556 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.0 0.0 0.00 4.52 R
4317 4604 1.136690 TGCTCAAGACGTTTACAGCG 58.863 50.000 0.0 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.649267 TTGGGTGATCTACAAACATGGA 57.351 40.909 0.00 0.00 0.00 3.41
22 23 4.860802 TGGGTGATCTACAAACATGGAT 57.139 40.909 0.00 0.00 0.00 3.41
23 24 4.525996 TGGGTGATCTACAAACATGGATG 58.474 43.478 0.00 0.00 0.00 3.51
24 25 3.316308 GGGTGATCTACAAACATGGATGC 59.684 47.826 0.00 0.00 0.00 3.91
25 26 3.947196 GGTGATCTACAAACATGGATGCA 59.053 43.478 0.00 0.00 0.00 3.96
26 27 4.398988 GGTGATCTACAAACATGGATGCAA 59.601 41.667 0.00 0.00 0.00 4.08
27 28 5.068198 GGTGATCTACAAACATGGATGCAAT 59.932 40.000 0.00 0.00 0.00 3.56
28 29 6.406177 GGTGATCTACAAACATGGATGCAATT 60.406 38.462 0.00 0.00 0.00 2.32
29 30 7.037438 GTGATCTACAAACATGGATGCAATTT 58.963 34.615 0.00 0.00 0.00 1.82
30 31 7.546667 GTGATCTACAAACATGGATGCAATTTT 59.453 33.333 0.00 0.00 0.00 1.82
31 32 8.095792 TGATCTACAAACATGGATGCAATTTTT 58.904 29.630 0.00 0.00 0.00 1.94
32 33 9.585099 GATCTACAAACATGGATGCAATTTTTA 57.415 29.630 0.00 0.00 0.00 1.52
34 35 9.941325 TCTACAAACATGGATGCAATTTTTATT 57.059 25.926 0.00 0.00 0.00 1.40
36 37 8.851541 ACAAACATGGATGCAATTTTTATTCT 57.148 26.923 0.00 0.00 0.00 2.40
37 38 9.287373 ACAAACATGGATGCAATTTTTATTCTT 57.713 25.926 0.00 0.00 0.00 2.52
40 41 8.851541 ACATGGATGCAATTTTTATTCTTTGT 57.148 26.923 0.00 0.00 0.00 2.83
41 42 9.941325 ACATGGATGCAATTTTTATTCTTTGTA 57.059 25.926 0.00 0.00 0.00 2.41
44 45 9.421806 TGGATGCAATTTTTATTCTTTGTACTG 57.578 29.630 0.00 0.00 0.00 2.74
45 46 8.382875 GGATGCAATTTTTATTCTTTGTACTGC 58.617 33.333 0.00 0.00 0.00 4.40
46 47 7.650834 TGCAATTTTTATTCTTTGTACTGCC 57.349 32.000 0.00 0.00 0.00 4.85
47 48 7.212976 TGCAATTTTTATTCTTTGTACTGCCA 58.787 30.769 0.00 0.00 0.00 4.92
168 182 1.207811 CAGGGTCATTGGCCAAAATCC 59.792 52.381 24.71 22.36 0.00 3.01
169 183 1.079323 AGGGTCATTGGCCAAAATCCT 59.921 47.619 24.71 24.23 0.00 3.24
174 188 3.996363 GTCATTGGCCAAAATCCTGAAAC 59.004 43.478 24.71 7.15 0.00 2.78
192 206 4.225942 TGAAACAGAGAAGGCCACATATCT 59.774 41.667 5.01 0.00 0.00 1.98
243 257 2.091994 TGGTAGGACTAGGTAGGACTGC 60.092 54.545 0.00 0.00 0.00 4.40
247 261 1.736365 GACTAGGTAGGACTGCGGGC 61.736 65.000 0.00 0.00 0.00 6.13
248 262 2.831742 TAGGTAGGACTGCGGGCG 60.832 66.667 0.00 0.00 0.00 6.13
249 263 3.650298 TAGGTAGGACTGCGGGCGT 62.650 63.158 0.00 0.00 0.00 5.68
250 264 2.269520 TAGGTAGGACTGCGGGCGTA 62.270 60.000 0.00 0.00 0.00 4.42
251 265 2.496291 GGTAGGACTGCGGGCGTAT 61.496 63.158 3.69 0.00 0.00 3.06
252 266 1.299926 GTAGGACTGCGGGCGTATG 60.300 63.158 3.69 0.00 0.00 2.39
379 399 3.057386 TCTCAAGTTGTACGCGGATAACA 60.057 43.478 29.27 16.12 0.00 2.41
387 407 1.069765 CGCGGATAACATGAGGCCT 59.930 57.895 3.86 3.86 0.00 5.19
388 408 0.532862 CGCGGATAACATGAGGCCTT 60.533 55.000 6.77 0.00 0.00 4.35
389 409 1.270094 CGCGGATAACATGAGGCCTTA 60.270 52.381 6.77 1.66 0.00 2.69
390 410 2.417719 GCGGATAACATGAGGCCTTAG 58.582 52.381 6.77 2.03 0.00 2.18
407 427 3.242673 CCTTAGTTAGGCGACACGAGTAG 60.243 52.174 0.00 0.00 37.17 2.57
431 451 6.763610 AGGATAGAAAATTTTAGACTGCCGAG 59.236 38.462 2.75 0.00 0.00 4.63
432 452 6.539103 GGATAGAAAATTTTAGACTGCCGAGT 59.461 38.462 2.75 0.00 33.98 4.18
485 505 4.097286 ACAGTGAAACAATTGTGTGGTACC 59.903 41.667 12.82 4.43 41.43 3.34
512 532 2.513897 GTATCGCAGCGGCCCTTT 60.514 61.111 16.42 0.00 36.38 3.11
528 548 5.043248 GGCCCTTTCAATTATTTCATCACG 58.957 41.667 0.00 0.00 0.00 4.35
533 555 9.801873 CCCTTTCAATTATTTCATCACGTAAAT 57.198 29.630 0.00 0.00 0.00 1.40
667 689 4.935808 ACTAGTATTGCTGAAAACCGGAAG 59.064 41.667 9.46 0.00 0.00 3.46
900 922 1.081092 CACCCTTCTCCTCCCTCCA 59.919 63.158 0.00 0.00 0.00 3.86
934 956 2.284699 ACCTCCCTTCCCTCCACG 60.285 66.667 0.00 0.00 0.00 4.94
948 970 2.027073 CCACGCTTGTTAGCTCGCA 61.027 57.895 0.00 0.00 45.51 5.10
1590 1612 1.893801 GAGGAAGAGGACGAGGAAACA 59.106 52.381 0.00 0.00 0.00 2.83
1852 1911 2.791383 TGTGCAAATTTCGTCTTGGG 57.209 45.000 0.00 0.00 0.00 4.12
1900 1972 6.647895 AGAATTTGATTTGGTTCTTGATGTGC 59.352 34.615 0.00 0.00 0.00 4.57
1901 1973 5.534207 TTTGATTTGGTTCTTGATGTGCT 57.466 34.783 0.00 0.00 0.00 4.40
1902 1974 4.771590 TGATTTGGTTCTTGATGTGCTC 57.228 40.909 0.00 0.00 0.00 4.26
1903 1975 4.401022 TGATTTGGTTCTTGATGTGCTCT 58.599 39.130 0.00 0.00 0.00 4.09
1904 1976 4.828939 TGATTTGGTTCTTGATGTGCTCTT 59.171 37.500 0.00 0.00 0.00 2.85
1905 1977 4.572985 TTTGGTTCTTGATGTGCTCTTG 57.427 40.909 0.00 0.00 0.00 3.02
1906 1978 3.490439 TGGTTCTTGATGTGCTCTTGA 57.510 42.857 0.00 0.00 0.00 3.02
1907 1979 3.405831 TGGTTCTTGATGTGCTCTTGAG 58.594 45.455 0.00 0.00 0.00 3.02
1908 1980 2.161211 GGTTCTTGATGTGCTCTTGAGC 59.839 50.000 15.01 15.01 0.00 4.26
1984 2056 2.983803 GTTTTGCCGCGTGATAATTTGT 59.016 40.909 4.92 0.00 0.00 2.83
1991 2063 2.537529 CGCGTGATAATTTGTCCTGCAG 60.538 50.000 6.78 6.78 0.00 4.41
1992 2064 2.792542 GCGTGATAATTTGTCCTGCAGC 60.793 50.000 8.66 0.00 0.00 5.25
2063 2135 1.373570 GGTGACAACTATGCCAGCTC 58.626 55.000 0.00 0.00 34.96 4.09
2167 2239 7.056844 TCAAACGGAAAATTTGGTTCCTTAT 57.943 32.000 5.97 0.00 42.13 1.73
2307 2379 2.875296 TGGTTGCTTGGCTGAAATAGT 58.125 42.857 0.00 0.00 0.00 2.12
2467 2539 2.673833 CGCTCAAGTTTCTTACGGTCT 58.326 47.619 0.00 0.00 0.00 3.85
2498 2570 3.939592 GACCTGTTCCCACTTATAACAGC 59.060 47.826 8.55 0.00 45.57 4.40
2499 2571 3.329520 ACCTGTTCCCACTTATAACAGCA 59.670 43.478 8.55 0.00 45.57 4.41
2500 2572 4.018415 ACCTGTTCCCACTTATAACAGCAT 60.018 41.667 8.55 0.00 45.57 3.79
2529 2601 5.919348 ATATCCCACTGGTTTCATCAGAT 57.081 39.130 0.00 0.00 36.22 2.90
2865 3138 5.326292 GCAGTTAACAAGTACACAAAACGT 58.674 37.500 8.61 0.00 0.00 3.99
2928 3201 6.480981 AGAAAATGAACCAAATTGTGCTGAAG 59.519 34.615 0.00 0.00 0.00 3.02
3082 3359 4.559862 AATCTGTTGACTAGGGTCCTTG 57.440 45.455 0.00 0.00 41.47 3.61
3135 3418 7.656707 TGGTCAATTACTTACTTACGAAACC 57.343 36.000 0.00 0.00 0.00 3.27
3136 3419 7.444299 TGGTCAATTACTTACTTACGAAACCT 58.556 34.615 0.00 0.00 0.00 3.50
3137 3420 7.933033 TGGTCAATTACTTACTTACGAAACCTT 59.067 33.333 0.00 0.00 0.00 3.50
3138 3421 8.777413 GGTCAATTACTTACTTACGAAACCTTT 58.223 33.333 0.00 0.00 0.00 3.11
3144 3427 7.912056 ACTTACTTACGAAACCTTTTATCCC 57.088 36.000 0.00 0.00 0.00 3.85
3145 3428 7.452562 ACTTACTTACGAAACCTTTTATCCCA 58.547 34.615 0.00 0.00 0.00 4.37
3146 3429 7.938490 ACTTACTTACGAAACCTTTTATCCCAA 59.062 33.333 0.00 0.00 0.00 4.12
3147 3430 8.688747 TTACTTACGAAACCTTTTATCCCAAA 57.311 30.769 0.00 0.00 0.00 3.28
3148 3431 6.973843 ACTTACGAAACCTTTTATCCCAAAC 58.026 36.000 0.00 0.00 0.00 2.93
3149 3432 6.546772 ACTTACGAAACCTTTTATCCCAAACA 59.453 34.615 0.00 0.00 0.00 2.83
3150 3433 5.855740 ACGAAACCTTTTATCCCAAACAA 57.144 34.783 0.00 0.00 0.00 2.83
3151 3434 5.838529 ACGAAACCTTTTATCCCAAACAAG 58.161 37.500 0.00 0.00 0.00 3.16
3152 3435 5.361571 ACGAAACCTTTTATCCCAAACAAGT 59.638 36.000 0.00 0.00 0.00 3.16
3153 3436 6.127281 ACGAAACCTTTTATCCCAAACAAGTT 60.127 34.615 0.00 0.00 0.00 2.66
3154 3437 6.200097 CGAAACCTTTTATCCCAAACAAGTTG 59.800 38.462 0.00 0.00 36.94 3.16
3163 3446 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3164 3447 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
3165 3448 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3166 3449 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3167 3450 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
3168 3451 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
3169 3452 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
3170 3453 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
3171 3454 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
3172 3455 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
3173 3456 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
3174 3457 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
3175 3458 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
3176 3459 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
3177 3460 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
3178 3461 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
3179 3462 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
3180 3463 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
3188 3471 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
3189 3472 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
3190 3473 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
3191 3474 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
3192 3475 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
3193 3476 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
3194 3477 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
3195 3478 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
3196 3479 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
3197 3480 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
3198 3481 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
3199 3482 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
3200 3483 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
3201 3484 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
3204 3487 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
3205 3488 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
3206 3489 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
3207 3490 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
3208 3491 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
3209 3492 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
3210 3493 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
3211 3494 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
3212 3495 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
3213 3496 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3214 3497 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
3215 3498 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3216 3499 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3217 3500 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3218 3501 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
3219 3502 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
3220 3503 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
3221 3504 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
3222 3505 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
3223 3506 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
3224 3507 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
3225 3508 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
3226 3509 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
3227 3510 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
3228 3511 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
3229 3512 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
3230 3513 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
3231 3514 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
3232 3515 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
3253 3536 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
3254 3537 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
3255 3538 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
3256 3539 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
3257 3540 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
3258 3541 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
3259 3542 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
3260 3543 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
3261 3544 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
3262 3545 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
3263 3546 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
3264 3547 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
3265 3548 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
3266 3549 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
3267 3550 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
3268 3551 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
3269 3552 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
3270 3553 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
3271 3554 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
3272 3555 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
3273 3556 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
3274 3557 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
3275 3558 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
3276 3559 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
3286 3569 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3287 3570 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3288 3571 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3289 3572 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3290 3573 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3291 3574 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3292 3575 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3293 3576 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
3294 3577 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
3295 3578 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
3296 3579 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
3297 3580 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
3298 3581 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
3299 3582 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
3300 3583 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
3301 3584 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
3302 3585 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
3303 3586 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
3304 3587 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
3305 3588 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
3306 3589 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
3307 3590 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
3308 3591 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
3309 3592 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
3310 3593 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
3318 3601 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
3319 3602 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
3320 3603 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
3321 3604 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
3322 3605 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
3323 3606 6.553615 GAAACCCTTTCACGAGGACTTCCT 62.554 50.000 0.00 0.00 43.41 3.36
3324 3607 7.251005 GAAACCCTTTCACGAGGACTTCCTA 62.251 48.000 0.00 0.00 42.02 2.94
3325 3608 8.945486 GAAACCCTTTCACGAGGACTTCCTAG 62.945 50.000 0.00 0.27 42.02 3.02
3335 3618 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
3336 3619 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
3337 3620 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
3338 3621 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
3339 3622 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
3340 3623 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
3341 3624 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
3342 3625 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
3343 3626 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3344 3627 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
3345 3628 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3346 3629 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3347 3630 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3348 3631 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
3349 3632 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
3350 3633 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
3351 3634 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
3352 3635 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
3353 3636 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
3354 3637 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
3355 3638 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
3356 3639 4.396790 CCCATCCTAGTACTATTCTCGCTC 59.603 50.000 2.33 0.00 0.00 5.03
3357 3640 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
3358 3641 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
3359 3642 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
3360 3643 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
3361 3644 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
3362 3645 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
3363 3646 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
3364 3647 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
3365 3648 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
3366 3649 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
3367 3650 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
3368 3651 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
3369 3652 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
3370 3653 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
3371 3654 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
3372 3655 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
3373 3656 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
3374 3657 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
3376 3659 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
3377 3660 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
3378 3661 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
3379 3662 5.194740 TCAAATGGGTTTCATACCTATGGGA 59.805 40.000 0.25 0.00 46.51 4.37
3380 3663 4.724279 ATGGGTTTCATACCTATGGGAC 57.276 45.455 0.25 0.00 45.57 4.46
3381 3664 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
3382 3665 3.458118 TGGGTTTCATACCTATGGGACTG 59.542 47.826 0.25 0.00 46.86 3.51
3383 3666 3.181443 GGGTTTCATACCTATGGGACTGG 60.181 52.174 0.25 0.00 46.86 4.00
3384 3667 3.477530 GTTTCATACCTATGGGACTGGC 58.522 50.000 0.25 0.00 34.50 4.85
3385 3668 2.795291 TCATACCTATGGGACTGGCT 57.205 50.000 0.25 0.00 34.50 4.75
3386 3669 3.915346 TCATACCTATGGGACTGGCTA 57.085 47.619 0.25 0.00 34.50 3.93
3387 3670 3.779444 TCATACCTATGGGACTGGCTAG 58.221 50.000 0.25 0.00 34.50 3.42
3388 3671 3.142217 TCATACCTATGGGACTGGCTAGT 59.858 47.826 0.69 0.69 35.65 2.57
3389 3672 2.570386 ACCTATGGGACTGGCTAGTT 57.430 50.000 3.47 0.00 37.25 2.24
3390 3673 2.846950 ACCTATGGGACTGGCTAGTTT 58.153 47.619 3.47 0.00 37.25 2.66
3391 3674 3.190439 ACCTATGGGACTGGCTAGTTTT 58.810 45.455 3.47 0.00 37.25 2.43
3392 3675 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
3393 3676 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
3394 3677 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
3395 3678 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
3396 3679 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
3397 3680 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
3398 3681 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
3399 3682 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
3400 3683 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
3401 3684 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
3402 3685 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
3403 3686 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
3404 3687 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
3405 3688 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
3406 3689 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
3416 3699 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3417 3700 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3418 3701 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3419 3702 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3420 3703 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3421 3704 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3422 3705 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3423 3706 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3424 3707 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3425 3708 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3426 3709 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3427 3710 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3428 3711 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3429 3712 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3430 3713 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3431 3714 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
3432 3715 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
3433 3716 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
3434 3717 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
3435 3718 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
3436 3719 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
3437 3720 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
3438 3721 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
3439 3722 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
3440 3723 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
3441 3724 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
3442 3725 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
3452 3735 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
3453 3736 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
3454 3737 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
3455 3738 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
3468 3751 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
3474 3757 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
3475 3758 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
3476 3759 4.142790 CCTAGAAGACATAGGCGGAGTTA 58.857 47.826 0.00 0.00 33.76 2.24
3477 3760 4.023021 CCTAGAAGACATAGGCGGAGTTAC 60.023 50.000 0.00 0.00 33.76 2.50
3478 3761 3.362706 AGAAGACATAGGCGGAGTTACA 58.637 45.455 0.00 0.00 0.00 2.41
3479 3762 3.961408 AGAAGACATAGGCGGAGTTACAT 59.039 43.478 0.00 0.00 0.00 2.29
3480 3763 4.406003 AGAAGACATAGGCGGAGTTACATT 59.594 41.667 0.00 0.00 0.00 2.71
3481 3764 5.597182 AGAAGACATAGGCGGAGTTACATTA 59.403 40.000 0.00 0.00 0.00 1.90
3482 3765 6.267928 AGAAGACATAGGCGGAGTTACATTAT 59.732 38.462 0.00 0.00 0.00 1.28
3483 3766 5.784177 AGACATAGGCGGAGTTACATTATG 58.216 41.667 0.00 0.00 0.00 1.90
3484 3767 4.894784 ACATAGGCGGAGTTACATTATGG 58.105 43.478 0.00 0.00 0.00 2.74
3485 3768 4.347000 ACATAGGCGGAGTTACATTATGGT 59.653 41.667 0.00 0.00 0.00 3.55
3486 3769 3.470645 AGGCGGAGTTACATTATGGTC 57.529 47.619 0.00 0.00 0.00 4.02
3793 4076 6.330278 TCGTCTTACATTAGTGAACAGATGG 58.670 40.000 0.00 0.00 0.00 3.51
3797 4080 8.033038 GTCTTACATTAGTGAACAGATGGTGTA 58.967 37.037 0.00 0.00 39.03 2.90
3798 4081 8.590204 TCTTACATTAGTGAACAGATGGTGTAA 58.410 33.333 0.00 0.00 39.03 2.41
3854 4141 6.731292 ACAGAGCCCAAAACTTTTAGATTT 57.269 33.333 0.00 0.00 0.00 2.17
3987 4274 2.419673 CAGTGTGAGACAAACAACAGCA 59.580 45.455 0.00 0.00 0.00 4.41
4023 4310 4.990426 CCAAATTTTTAACAGCAGGGACAG 59.010 41.667 0.00 0.00 0.00 3.51
4317 4604 1.537202 CTGACAAGCTGTAGTTTGCCC 59.463 52.381 8.16 2.53 39.43 5.36
4472 4759 2.026449 CAGAAACCTGAAGGAGATGGCT 60.026 50.000 2.62 0.00 38.94 4.75
4523 4810 8.239314 AGCTTGATAACATTTGTTGTACATCAG 58.761 33.333 6.71 0.00 39.33 2.90
4597 4884 2.493278 GGTGCTTAATTGTGGACTGCAT 59.507 45.455 0.00 0.00 0.00 3.96
4676 4968 4.124970 GTCACGAAACTACAAAGGGAAGT 58.875 43.478 0.00 0.00 0.00 3.01
4716 5008 4.060900 ACACTGCTCATCACTGTAACTTG 58.939 43.478 0.00 0.00 0.00 3.16
4863 5155 4.510340 GGCATAGGTACAACAAAGTATCCG 59.490 45.833 0.00 0.00 0.00 4.18
5013 5306 4.462508 TCTTAGAGTTGGTCTGCATCAG 57.537 45.455 0.00 0.00 36.64 2.90
5014 5307 3.834813 TCTTAGAGTTGGTCTGCATCAGT 59.165 43.478 0.00 0.00 36.64 3.41
5015 5308 2.469274 AGAGTTGGTCTGCATCAGTG 57.531 50.000 0.00 0.00 32.57 3.66
5293 5586 2.356382 AGCTCTCCTGTTAGATTCGTCG 59.644 50.000 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.649267 TCCATGTTTGTAGATCACCCAA 57.351 40.909 0.00 0.00 0.00 4.12
2 3 3.316308 GCATCCATGTTTGTAGATCACCC 59.684 47.826 0.00 0.00 0.00 4.61
3 4 3.947196 TGCATCCATGTTTGTAGATCACC 59.053 43.478 0.00 0.00 0.00 4.02
4 5 5.565592 TTGCATCCATGTTTGTAGATCAC 57.434 39.130 0.00 0.00 0.00 3.06
6 7 8.483307 AAAAATTGCATCCATGTTTGTAGATC 57.517 30.769 0.00 0.00 0.00 2.75
8 9 9.941325 AATAAAAATTGCATCCATGTTTGTAGA 57.059 25.926 0.00 0.00 0.00 2.59
10 11 9.941325 AGAATAAAAATTGCATCCATGTTTGTA 57.059 25.926 0.00 0.00 0.00 2.41
11 12 8.851541 AGAATAAAAATTGCATCCATGTTTGT 57.148 26.923 0.00 0.00 0.00 2.83
14 15 9.287373 ACAAAGAATAAAAATTGCATCCATGTT 57.713 25.926 0.00 0.00 0.00 2.71
15 16 8.851541 ACAAAGAATAAAAATTGCATCCATGT 57.148 26.923 0.00 0.00 0.00 3.21
18 19 9.421806 CAGTACAAAGAATAAAAATTGCATCCA 57.578 29.630 0.00 0.00 0.00 3.41
19 20 8.382875 GCAGTACAAAGAATAAAAATTGCATCC 58.617 33.333 0.00 0.00 0.00 3.51
20 21 8.382875 GGCAGTACAAAGAATAAAAATTGCATC 58.617 33.333 0.00 0.00 0.00 3.91
21 22 7.877097 TGGCAGTACAAAGAATAAAAATTGCAT 59.123 29.630 0.00 0.00 0.00 3.96
22 23 7.212976 TGGCAGTACAAAGAATAAAAATTGCA 58.787 30.769 0.00 0.00 0.00 4.08
23 24 7.650834 TGGCAGTACAAAGAATAAAAATTGC 57.349 32.000 0.00 0.00 0.00 3.56
24 25 8.658609 CCATGGCAGTACAAAGAATAAAAATTG 58.341 33.333 0.00 0.00 0.00 2.32
25 26 7.334171 GCCATGGCAGTACAAAGAATAAAAATT 59.666 33.333 32.08 0.00 41.49 1.82
26 27 6.818142 GCCATGGCAGTACAAAGAATAAAAAT 59.182 34.615 32.08 0.00 41.49 1.82
27 28 6.162777 GCCATGGCAGTACAAAGAATAAAAA 58.837 36.000 32.08 0.00 41.49 1.94
28 29 5.719173 GCCATGGCAGTACAAAGAATAAAA 58.281 37.500 32.08 0.00 41.49 1.52
29 30 5.323371 GCCATGGCAGTACAAAGAATAAA 57.677 39.130 32.08 0.00 41.49 1.40
30 31 4.981806 GCCATGGCAGTACAAAGAATAA 57.018 40.909 32.08 0.00 41.49 1.40
44 45 6.707608 TCGATCTATTTATCATATGCCATGGC 59.292 38.462 30.54 30.54 42.35 4.40
45 46 8.667076 TTCGATCTATTTATCATATGCCATGG 57.333 34.615 7.63 7.63 0.00 3.66
47 48 9.896645 ACTTTCGATCTATTTATCATATGCCAT 57.103 29.630 0.00 0.00 0.00 4.40
168 182 2.260844 TGTGGCCTTCTCTGTTTCAG 57.739 50.000 3.32 0.00 0.00 3.02
169 183 2.957402 ATGTGGCCTTCTCTGTTTCA 57.043 45.000 3.32 0.00 0.00 2.69
174 188 4.686191 AGAAGATATGTGGCCTTCTCTG 57.314 45.455 3.32 0.00 41.83 3.35
192 206 1.203125 CCCTTGGCCTTTGGGTAAGAA 60.203 52.381 16.79 0.00 35.80 2.52
243 257 0.179084 ACATCTTCACCATACGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
247 261 7.200455 TGTTATCAGTACATCTTCACCATACG 58.800 38.462 0.00 0.00 0.00 3.06
248 262 8.818057 GTTGTTATCAGTACATCTTCACCATAC 58.182 37.037 0.00 0.00 0.00 2.39
249 263 8.536175 TGTTGTTATCAGTACATCTTCACCATA 58.464 33.333 0.00 0.00 0.00 2.74
250 264 7.394016 TGTTGTTATCAGTACATCTTCACCAT 58.606 34.615 0.00 0.00 0.00 3.55
251 265 6.764379 TGTTGTTATCAGTACATCTTCACCA 58.236 36.000 0.00 0.00 0.00 4.17
252 266 7.097192 TCTGTTGTTATCAGTACATCTTCACC 58.903 38.462 0.00 0.00 34.86 4.02
339 359 7.227156 ACTTGAGAAAAATAGCCTCTTCTTCA 58.773 34.615 0.00 0.00 0.00 3.02
340 360 7.680442 ACTTGAGAAAAATAGCCTCTTCTTC 57.320 36.000 0.00 0.00 0.00 2.87
341 361 7.503902 ACAACTTGAGAAAAATAGCCTCTTCTT 59.496 33.333 0.00 0.00 0.00 2.52
342 362 7.001073 ACAACTTGAGAAAAATAGCCTCTTCT 58.999 34.615 0.00 0.00 0.00 2.85
387 407 2.679837 CCTACTCGTGTCGCCTAACTAA 59.320 50.000 0.00 0.00 0.00 2.24
388 408 2.093500 TCCTACTCGTGTCGCCTAACTA 60.093 50.000 0.00 0.00 0.00 2.24
389 409 1.093159 CCTACTCGTGTCGCCTAACT 58.907 55.000 0.00 0.00 0.00 2.24
390 410 1.089920 TCCTACTCGTGTCGCCTAAC 58.910 55.000 0.00 0.00 0.00 2.34
407 427 6.539103 ACTCGGCAGTCTAAAATTTTCTATCC 59.461 38.462 6.72 3.32 0.00 2.59
431 451 5.591643 AAATCGATCGTATTGGTGCATAC 57.408 39.130 15.94 0.00 0.00 2.39
432 452 7.899178 AATAAATCGATCGTATTGGTGCATA 57.101 32.000 15.94 3.08 0.00 3.14
528 548 5.298527 CGGATCCTCTGGGGTTTTTATTTAC 59.701 44.000 10.75 0.00 36.25 2.01
533 555 2.553464 TCGGATCCTCTGGGGTTTTTA 58.447 47.619 10.75 0.00 36.25 1.52
537 559 1.596496 AATTCGGATCCTCTGGGGTT 58.404 50.000 10.75 0.00 36.25 4.11
538 560 1.490910 GAAATTCGGATCCTCTGGGGT 59.509 52.381 10.75 0.00 36.25 4.95
539 561 1.202818 GGAAATTCGGATCCTCTGGGG 60.203 57.143 10.75 0.00 32.75 4.96
540 562 1.541233 CGGAAATTCGGATCCTCTGGG 60.541 57.143 10.75 0.00 33.36 4.45
541 563 1.871080 CGGAAATTCGGATCCTCTGG 58.129 55.000 10.75 0.00 33.36 3.86
568 590 4.200874 TCCTGTGCCTTTTTCGTTTTCTA 58.799 39.130 0.00 0.00 0.00 2.10
691 713 2.781368 GGGGGTGGGAATAGGGGG 60.781 72.222 0.00 0.00 0.00 5.40
692 714 2.045474 TGGGGGTGGGAATAGGGG 59.955 66.667 0.00 0.00 0.00 4.79
900 922 0.106521 GGTGTGGCAAGCAAACCAAT 59.893 50.000 0.00 0.00 37.79 3.16
934 956 0.453449 GCAACTGCGAGCTAACAAGC 60.453 55.000 0.00 0.00 0.00 4.01
991 1013 3.634072 GCTAGACATGCCGCAGCG 61.634 66.667 8.18 8.18 44.31 5.18
1697 1752 1.131883 CTTCGCATGCAAGAAGGAAGG 59.868 52.381 21.20 2.20 39.94 3.46
1698 1753 2.079158 TCTTCGCATGCAAGAAGGAAG 58.921 47.619 25.61 22.38 42.85 3.46
1699 1754 2.183478 TCTTCGCATGCAAGAAGGAA 57.817 45.000 25.61 15.94 42.85 3.36
1700 1755 2.183478 TTCTTCGCATGCAAGAAGGA 57.817 45.000 27.08 20.35 42.85 3.36
1852 1911 1.541588 GATGCAGAAAAGGTCACACCC 59.458 52.381 0.00 0.00 39.75 4.61
1900 1972 5.321959 TGTGTATCAGAAGAGCTCAAGAG 57.678 43.478 17.77 3.13 0.00 2.85
1901 1973 5.728637 TTGTGTATCAGAAGAGCTCAAGA 57.271 39.130 17.77 8.13 0.00 3.02
1902 1974 6.648310 TCTTTTGTGTATCAGAAGAGCTCAAG 59.352 38.462 17.77 5.46 40.67 3.02
1903 1975 6.524734 TCTTTTGTGTATCAGAAGAGCTCAA 58.475 36.000 17.77 0.00 40.67 3.02
1904 1976 6.101650 TCTTTTGTGTATCAGAAGAGCTCA 57.898 37.500 17.77 0.00 40.67 4.26
1905 1977 7.043722 CGTATCTTTTGTGTATCAGAAGAGCTC 60.044 40.741 5.27 5.27 45.79 4.09
1906 1978 6.754209 CGTATCTTTTGTGTATCAGAAGAGCT 59.246 38.462 0.00 0.00 45.79 4.09
1907 1979 6.508721 GCGTATCTTTTGTGTATCAGAAGAGC 60.509 42.308 6.87 2.67 45.79 4.09
1908 1980 6.531594 TGCGTATCTTTTGTGTATCAGAAGAG 59.468 38.462 6.87 0.00 45.79 2.85
1992 2064 7.047891 TGGAAAGGATAATAGTAGCAAGTGTG 58.952 38.462 0.00 0.00 0.00 3.82
2002 2074 6.521527 AAGCATCCTGGAAAGGATAATAGT 57.478 37.500 6.94 0.00 46.23 2.12
2063 2135 5.468592 CAGCTCCTACATTCAGCAGTATAG 58.531 45.833 0.00 0.00 35.46 1.31
2307 2379 3.007398 ACCAACACCACAAGAAGCAAAAA 59.993 39.130 0.00 0.00 0.00 1.94
2386 2458 9.533831 AATAGGAACCATGTAAAATTCAGTTCT 57.466 29.630 0.00 0.00 34.13 3.01
2427 2499 3.305744 GCGCAAAAGTATGGAAGGGAAAA 60.306 43.478 0.30 0.00 0.00 2.29
2509 2581 5.715439 TTATCTGATGAAACCAGTGGGAT 57.285 39.130 15.21 6.33 38.05 3.85
2645 2717 3.873801 GCAGGGTTGAATGACACAGGTAT 60.874 47.826 0.00 0.00 0.00 2.73
2650 2722 2.637382 TCTAGCAGGGTTGAATGACACA 59.363 45.455 0.00 0.00 0.00 3.72
2928 3201 2.360165 CTGGTGGATTTGATGCCTAAGC 59.640 50.000 0.00 0.00 40.48 3.09
3118 3401 9.435688 GGGATAAAAGGTTTCGTAAGTAAGTAA 57.564 33.333 0.00 0.00 39.48 2.24
3119 3402 8.592809 TGGGATAAAAGGTTTCGTAAGTAAGTA 58.407 33.333 0.00 0.00 39.48 2.24
3120 3403 7.452562 TGGGATAAAAGGTTTCGTAAGTAAGT 58.547 34.615 0.00 0.00 39.48 2.24
3121 3404 7.910441 TGGGATAAAAGGTTTCGTAAGTAAG 57.090 36.000 0.00 0.00 39.48 2.34
3122 3405 8.567104 GTTTGGGATAAAAGGTTTCGTAAGTAA 58.433 33.333 0.00 0.00 39.48 2.24
3123 3406 7.718753 TGTTTGGGATAAAAGGTTTCGTAAGTA 59.281 33.333 0.00 0.00 39.48 2.24
3124 3407 6.546772 TGTTTGGGATAAAAGGTTTCGTAAGT 59.453 34.615 0.00 0.00 39.48 2.24
3125 3408 6.972722 TGTTTGGGATAAAAGGTTTCGTAAG 58.027 36.000 0.00 0.00 0.00 2.34
3126 3409 6.956202 TGTTTGGGATAAAAGGTTTCGTAA 57.044 33.333 0.00 0.00 0.00 3.18
3127 3410 6.546772 ACTTGTTTGGGATAAAAGGTTTCGTA 59.453 34.615 0.00 0.00 0.00 3.43
3128 3411 5.361571 ACTTGTTTGGGATAAAAGGTTTCGT 59.638 36.000 0.00 0.00 0.00 3.85
3129 3412 5.838529 ACTTGTTTGGGATAAAAGGTTTCG 58.161 37.500 0.00 0.00 0.00 3.46
3130 3413 7.477144 CAACTTGTTTGGGATAAAAGGTTTC 57.523 36.000 0.00 0.00 0.00 2.78
3144 3427 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3145 3428 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3146 3429 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
3147 3430 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
3148 3431 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
3149 3432 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
3150 3433 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
3151 3434 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
3152 3435 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
3153 3436 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
3154 3437 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
3155 3438 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
3156 3439 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
3157 3440 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
3159 3442 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
3169 3452 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
3170 3453 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
3171 3454 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
3172 3455 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
3173 3456 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
3174 3457 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
3175 3458 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
3176 3459 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
3177 3460 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
3178 3461 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
3179 3462 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
3180 3463 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
3181 3464 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
3182 3465 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
3183 3466 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
3184 3467 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
3185 3468 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
3186 3469 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
3187 3470 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
3199 3482 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
3200 3483 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
3201 3484 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
3202 3485 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
3203 3486 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
3204 3487 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
3205 3488 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
3206 3489 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
3207 3490 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
3208 3491 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
3209 3492 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
3210 3493 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
3211 3494 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
3212 3495 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
3232 3515 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
3233 3516 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
3234 3517 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
3235 3518 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
3236 3519 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
3237 3520 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
3238 3521 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
3239 3522 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
3241 3524 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
3242 3525 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
3243 3526 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
3244 3527 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
3245 3528 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
3246 3529 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
3247 3530 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
3248 3531 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
3249 3532 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
3250 3533 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
3251 3534 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
3252 3535 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
3253 3536 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
3254 3537 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
3255 3538 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
3256 3539 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
3257 3540 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
3258 3541 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
3259 3542 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
3270 3553 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3271 3554 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3272 3555 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3273 3556 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3274 3557 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
3275 3558 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
3276 3559 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
3277 3560 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
3278 3561 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
3279 3562 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
3280 3563 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
3281 3564 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
3282 3565 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
3283 3566 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
3284 3567 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
3285 3568 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
3286 3569 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
3287 3570 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
3288 3571 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
3299 3582 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
3300 3583 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
3301 3584 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
3302 3585 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
3303 3586 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
3304 3587 0.977395 AGGAAGTCCTCGTGAAAGGG 59.023 55.000 0.00 0.00 44.77 3.95
3305 3588 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
3306 3589 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
3307 3590 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
3308 3591 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
3309 3592 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
3310 3593 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
3311 3594 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
3312 3595 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
3313 3596 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
3315 3598 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
3329 3612 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
3330 3613 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
3331 3614 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
3332 3615 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
3333 3616 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
3334 3617 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
3335 3618 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
3336 3619 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
3337 3620 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
3338 3621 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
3339 3622 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
3340 3623 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
3341 3624 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
3342 3625 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
3343 3626 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
3344 3627 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
3345 3628 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
3346 3629 4.584874 TGAAACCCATTTGAGCGAGAATA 58.415 39.130 0.00 0.00 0.00 1.75
3347 3630 3.420893 TGAAACCCATTTGAGCGAGAAT 58.579 40.909 0.00 0.00 0.00 2.40
3348 3631 2.857483 TGAAACCCATTTGAGCGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
3349 3632 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
3350 3633 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
3351 3634 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
3352 3635 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
3363 3646 3.136626 AGCCAGTCCCATAGGTATGAAAC 59.863 47.826 0.00 0.00 35.75 2.78
3364 3647 3.393687 AGCCAGTCCCATAGGTATGAAA 58.606 45.455 0.00 0.00 35.75 2.69
3365 3648 3.060479 AGCCAGTCCCATAGGTATGAA 57.940 47.619 0.00 0.00 35.75 2.57
3366 3649 2.795291 AGCCAGTCCCATAGGTATGA 57.205 50.000 0.00 0.00 35.75 2.15
3367 3650 3.511477 ACTAGCCAGTCCCATAGGTATG 58.489 50.000 0.00 0.00 0.00 2.39
3368 3651 3.925261 ACTAGCCAGTCCCATAGGTAT 57.075 47.619 0.00 0.00 0.00 2.73
3369 3652 3.700863 AACTAGCCAGTCCCATAGGTA 57.299 47.619 0.00 0.00 32.29 3.08
3370 3653 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
3371 3654 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
3372 3655 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
3373 3656 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
3374 3657 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
3375 3658 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
3376 3659 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
3377 3660 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
3378 3661 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
3379 3662 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
3380 3663 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
3381 3664 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
3382 3665 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
3383 3666 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
3384 3667 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
3385 3668 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
3386 3669 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
3387 3670 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
3388 3671 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
3389 3672 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
3400 3683 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3401 3684 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3402 3685 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3403 3686 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3404 3687 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3405 3688 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3406 3689 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3407 3690 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3408 3691 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3409 3692 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3410 3693 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
3411 3694 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
3412 3695 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
3413 3696 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
3414 3697 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
3415 3698 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
3416 3699 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
3417 3700 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
3418 3701 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
3419 3702 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
3420 3703 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
3421 3704 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
3422 3705 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
3423 3706 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
3424 3707 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
3425 3708 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
3426 3709 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
3435 3718 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
3436 3719 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
3437 3720 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
3438 3721 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
3454 3737 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
3455 3738 4.579340 TGTAACTCCGCCTATGTCTTCTAG 59.421 45.833 0.00 0.00 0.00 2.43
3456 3739 4.529897 TGTAACTCCGCCTATGTCTTCTA 58.470 43.478 0.00 0.00 0.00 2.10
3457 3740 3.362706 TGTAACTCCGCCTATGTCTTCT 58.637 45.455 0.00 0.00 0.00 2.85
3458 3741 3.795623 TGTAACTCCGCCTATGTCTTC 57.204 47.619 0.00 0.00 0.00 2.87
3459 3742 4.755266 AATGTAACTCCGCCTATGTCTT 57.245 40.909 0.00 0.00 0.00 3.01
3460 3743 5.279506 CCATAATGTAACTCCGCCTATGTCT 60.280 44.000 0.00 0.00 0.00 3.41
3461 3744 4.929808 CCATAATGTAACTCCGCCTATGTC 59.070 45.833 0.00 0.00 0.00 3.06
3462 3745 4.347000 ACCATAATGTAACTCCGCCTATGT 59.653 41.667 0.00 0.00 0.00 2.29
3463 3746 4.894784 ACCATAATGTAACTCCGCCTATG 58.105 43.478 0.00 0.00 0.00 2.23
3464 3747 4.591498 TGACCATAATGTAACTCCGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
3465 3748 3.962063 TGACCATAATGTAACTCCGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
3466 3749 2.769663 TGACCATAATGTAACTCCGCCT 59.230 45.455 0.00 0.00 0.00 5.52
3467 3750 3.188159 TGACCATAATGTAACTCCGCC 57.812 47.619 0.00 0.00 0.00 6.13
3468 3751 4.213482 GGATTGACCATAATGTAACTCCGC 59.787 45.833 0.00 0.00 38.79 5.54
3469 3752 5.364778 TGGATTGACCATAATGTAACTCCG 58.635 41.667 0.00 0.00 44.64 4.63
3482 3765 7.234371 TCAATAAAATTCCAAGTGGATTGACCA 59.766 33.333 0.00 0.00 44.98 4.02
3483 3766 7.610865 TCAATAAAATTCCAAGTGGATTGACC 58.389 34.615 0.00 0.00 44.98 4.02
3484 3767 8.522830 TCTCAATAAAATTCCAAGTGGATTGAC 58.477 33.333 0.00 0.00 44.98 3.18
3485 3768 8.648698 TCTCAATAAAATTCCAAGTGGATTGA 57.351 30.769 0.00 6.29 44.98 2.57
3486 3769 9.709495 TTTCTCAATAAAATTCCAAGTGGATTG 57.291 29.630 0.00 2.11 44.98 2.67
3712 3995 3.191791 GCCAAACGGCTTAAATTAGTGGA 59.808 43.478 0.00 0.00 46.85 4.02
3761 4044 5.935206 TCACTAATGTAAGACGATTTGGCAA 59.065 36.000 0.00 0.00 0.00 4.52
3793 4076 7.434897 TGATTTCTTTGTGAGTTGCATTTACAC 59.565 33.333 0.00 0.00 0.00 2.90
3797 4080 7.846644 TTTGATTTCTTTGTGAGTTGCATTT 57.153 28.000 0.00 0.00 0.00 2.32
3798 4081 7.466320 GCTTTTGATTTCTTTGTGAGTTGCATT 60.466 33.333 0.00 0.00 0.00 3.56
3854 4141 6.524734 TGTTTCTTCTCAACTCTCATAAGCA 58.475 36.000 0.00 0.00 0.00 3.91
3896 4183 7.094205 GGGAGAACTTCATCTTGCTGAAATAAA 60.094 37.037 0.00 0.00 34.86 1.40
3971 4258 3.118408 AGGTAGTGCTGTTGTTTGTCTCA 60.118 43.478 0.00 0.00 0.00 3.27
4317 4604 1.136690 TGCTCAAGACGTTTACAGCG 58.863 50.000 0.00 0.00 0.00 5.18
4398 4685 3.741249 TCGAATGCCGAGATACTCTACT 58.259 45.455 0.00 0.00 43.23 2.57
4472 4759 3.091545 GCATCTCCCATGAGGAAAACAA 58.908 45.455 0.00 0.00 46.94 2.83
4597 4884 4.103153 ACTTGGAGAGAAACAGAACATCCA 59.897 41.667 0.00 0.00 33.68 3.41
4716 5008 4.378874 GCAGTTGCACTCCTAGAATTCAAC 60.379 45.833 8.44 0.70 41.59 3.18
4863 5155 4.507756 TCGATGATGCTACATGTGTTTAGC 59.492 41.667 9.11 10.09 36.20 3.09
5013 5306 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
5014 5307 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
5015 5308 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.