Multiple sequence alignment - TraesCS2A01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G286300 chr2A 100.000 6198 0 0 1 6198 485906572 485900375 0.000000e+00 11446.0
1 TraesCS2A01G286300 chr2A 97.019 2013 51 5 2285 4295 348487075 348489080 0.000000e+00 3376.0
2 TraesCS2A01G286300 chr2A 92.376 2151 140 15 388 2526 664977903 664980041 0.000000e+00 3042.0
3 TraesCS2A01G286300 chr2A 93.064 1730 98 10 2572 4295 664980035 664981748 0.000000e+00 2510.0
4 TraesCS2A01G286300 chr2A 93.939 198 12 0 198 395 664972631 664972828 3.630000e-77 300.0
5 TraesCS2A01G286300 chr2A 100.000 29 0 0 416 444 664977901 664977929 3.000000e-03 54.7
6 TraesCS2A01G286300 chr6D 94.727 3110 122 12 1190 4295 379407775 379410846 0.000000e+00 4796.0
7 TraesCS2A01G286300 chr6D 93.609 1909 112 6 4297 6198 410381088 410382993 0.000000e+00 2841.0
8 TraesCS2A01G286300 chr6D 93.141 1910 119 8 4296 6198 23950309 23952213 0.000000e+00 2791.0
9 TraesCS2A01G286300 chr1D 93.403 1910 115 7 4296 6198 280634160 280636065 0.000000e+00 2819.0
10 TraesCS2A01G286300 chr1D 93.288 1907 118 6 4296 6195 435673738 435675641 0.000000e+00 2804.0
11 TraesCS2A01G286300 chr1D 93.246 1910 117 8 4296 6198 113244171 113246075 0.000000e+00 2802.0
12 TraesCS2A01G286300 chr1D 95.431 197 9 0 1 197 207628838 207629034 1.300000e-81 315.0
13 TraesCS2A01G286300 chr1D 95.431 197 9 0 1 197 456833144 456832948 1.300000e-81 315.0
14 TraesCS2A01G286300 chr2D 93.351 1910 114 9 4296 6198 517940240 517938337 0.000000e+00 2811.0
15 TraesCS2A01G286300 chr2D 95.939 197 8 0 1 197 248094385 248094581 2.790000e-83 320.0
16 TraesCS2A01G286300 chr5D 93.194 1910 119 7 4296 6198 127892226 127890321 0.000000e+00 2796.0
17 TraesCS2A01G286300 chr5D 95.431 197 9 0 1 197 15473080 15473276 1.300000e-81 315.0
18 TraesCS2A01G286300 chr5D 95.431 197 9 0 1 197 74075005 74075201 1.300000e-81 315.0
19 TraesCS2A01G286300 chr5D 95.431 197 9 0 1 197 382653218 382653022 1.300000e-81 315.0
20 TraesCS2A01G286300 chr3D 93.194 1910 119 7 4296 6198 478520877 478522782 0.000000e+00 2796.0
21 TraesCS2A01G286300 chr3D 83.427 1062 131 30 3268 4295 36550506 36549456 0.000000e+00 944.0
22 TraesCS2A01G286300 chr3D 83.631 1008 125 21 3318 4295 571174991 571173994 0.000000e+00 911.0
23 TraesCS2A01G286300 chr3D 100.000 29 0 0 2392 2420 9415332 9415360 3.000000e-03 54.7
24 TraesCS2A01G286300 chr4D 93.141 1910 120 7 4296 6198 414797457 414795552 0.000000e+00 2791.0
25 TraesCS2A01G286300 chr7A 86.089 1028 135 6 3268 4295 155989299 155990318 0.000000e+00 1099.0
26 TraesCS2A01G286300 chr7A 81.400 457 61 16 198 649 643529858 643529421 9.890000e-93 351.0
27 TraesCS2A01G286300 chr7A 90.789 76 6 1 2656 2730 155988575 155988650 3.950000e-17 100.0
28 TraesCS2A01G286300 chr7A 92.647 68 4 1 3198 3264 155989198 155989265 5.110000e-16 97.1
29 TraesCS2A01G286300 chr6A 82.752 1061 139 29 3268 4296 303018903 303017855 0.000000e+00 905.0
30 TraesCS2A01G286300 chr6A 83.162 291 42 7 3515 3800 41099600 41099888 6.160000e-65 259.0
31 TraesCS2A01G286300 chr6A 81.977 172 29 2 4125 4295 292956445 292956615 1.800000e-30 145.0
32 TraesCS2A01G286300 chr5A 82.840 1014 133 23 3318 4298 391445264 391446269 0.000000e+00 870.0
33 TraesCS2A01G286300 chr5A 80.176 454 65 15 198 646 565025479 565025912 3.610000e-82 316.0
34 TraesCS2A01G286300 chr5A 88.636 132 11 4 1528 1656 666506541 666506411 2.310000e-34 158.0
35 TraesCS2A01G286300 chr1A 97.778 270 6 0 195 464 34152604 34152873 3.380000e-127 466.0
36 TraesCS2A01G286300 chr1A 82.599 454 55 16 198 646 112634682 112634248 4.530000e-101 379.0
37 TraesCS2A01G286300 chr1A 81.206 431 57 12 198 624 548474958 548474548 5.990000e-85 326.0
38 TraesCS2A01G286300 chr1A 84.669 287 34 5 2657 2936 270000146 270000429 1.700000e-70 278.0
39 TraesCS2A01G286300 chr1A 88.636 132 11 4 1528 1656 45633033 45633163 2.310000e-34 158.0
40 TraesCS2A01G286300 chr3A 82.561 453 57 14 198 646 65881143 65880709 4.530000e-101 379.0
41 TraesCS2A01G286300 chr3A 82.258 124 22 0 4172 4295 296109644 296109521 2.360000e-19 108.0
42 TraesCS2A01G286300 chr1B 81.416 452 57 13 199 646 624029707 624029279 1.650000e-90 344.0
43 TraesCS2A01G286300 chr1B 87.864 206 23 2 2732 2936 306076012 306075808 2.230000e-59 241.0
44 TraesCS2A01G286300 chr1B 87.013 77 6 2 2657 2731 306076108 306076034 3.980000e-12 84.2
45 TraesCS2A01G286300 chrUn 85.119 336 45 4 3268 3602 304374853 304374522 7.700000e-89 339.0
46 TraesCS2A01G286300 chr7B 95.939 197 8 0 1 197 600853027 600852831 2.790000e-83 320.0
47 TraesCS2A01G286300 chr7B 88.506 87 10 0 1654 1740 15516517 15516431 8.500000e-19 106.0
48 TraesCS2A01G286300 chr7B 96.970 33 1 0 2628 2660 15516463 15516431 8.680000e-04 56.5
49 TraesCS2A01G286300 chr6B 95.939 197 8 0 1 197 247852034 247852230 2.790000e-83 320.0
50 TraesCS2A01G286300 chr6B 95.431 197 9 0 1 197 65682923 65683119 1.300000e-81 315.0
51 TraesCS2A01G286300 chr2B 79.200 375 65 12 3928 4296 732215009 732215376 1.330000e-61 248.0
52 TraesCS2A01G286300 chr7D 82.533 229 37 3 200 426 632744883 632745110 1.360000e-46 198.0
53 TraesCS2A01G286300 chr7D 88.636 132 11 4 1528 1656 528070247 528070377 2.310000e-34 158.0
54 TraesCS2A01G286300 chr4B 88.636 132 11 4 1528 1656 566608444 566608574 2.310000e-34 158.0
55 TraesCS2A01G286300 chr3B 79.808 104 15 6 2392 2493 28312712 28312811 3.100000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G286300 chr2A 485900375 485906572 6197 True 11446.000000 11446 100.000000 1 6198 1 chr2A.!!$R1 6197
1 TraesCS2A01G286300 chr2A 348487075 348489080 2005 False 3376.000000 3376 97.019000 2285 4295 1 chr2A.!!$F1 2010
2 TraesCS2A01G286300 chr2A 664977901 664981748 3847 False 1868.900000 3042 95.146667 388 4295 3 chr2A.!!$F3 3907
3 TraesCS2A01G286300 chr6D 379407775 379410846 3071 False 4796.000000 4796 94.727000 1190 4295 1 chr6D.!!$F2 3105
4 TraesCS2A01G286300 chr6D 410381088 410382993 1905 False 2841.000000 2841 93.609000 4297 6198 1 chr6D.!!$F3 1901
5 TraesCS2A01G286300 chr6D 23950309 23952213 1904 False 2791.000000 2791 93.141000 4296 6198 1 chr6D.!!$F1 1902
6 TraesCS2A01G286300 chr1D 280634160 280636065 1905 False 2819.000000 2819 93.403000 4296 6198 1 chr1D.!!$F3 1902
7 TraesCS2A01G286300 chr1D 435673738 435675641 1903 False 2804.000000 2804 93.288000 4296 6195 1 chr1D.!!$F4 1899
8 TraesCS2A01G286300 chr1D 113244171 113246075 1904 False 2802.000000 2802 93.246000 4296 6198 1 chr1D.!!$F1 1902
9 TraesCS2A01G286300 chr2D 517938337 517940240 1903 True 2811.000000 2811 93.351000 4296 6198 1 chr2D.!!$R1 1902
10 TraesCS2A01G286300 chr5D 127890321 127892226 1905 True 2796.000000 2796 93.194000 4296 6198 1 chr5D.!!$R1 1902
11 TraesCS2A01G286300 chr3D 478520877 478522782 1905 False 2796.000000 2796 93.194000 4296 6198 1 chr3D.!!$F2 1902
12 TraesCS2A01G286300 chr3D 36549456 36550506 1050 True 944.000000 944 83.427000 3268 4295 1 chr3D.!!$R1 1027
13 TraesCS2A01G286300 chr3D 571173994 571174991 997 True 911.000000 911 83.631000 3318 4295 1 chr3D.!!$R2 977
14 TraesCS2A01G286300 chr4D 414795552 414797457 1905 True 2791.000000 2791 93.141000 4296 6198 1 chr4D.!!$R1 1902
15 TraesCS2A01G286300 chr7A 155988575 155990318 1743 False 432.033333 1099 89.841667 2656 4295 3 chr7A.!!$F1 1639
16 TraesCS2A01G286300 chr6A 303017855 303018903 1048 True 905.000000 905 82.752000 3268 4296 1 chr6A.!!$R1 1028
17 TraesCS2A01G286300 chr5A 391445264 391446269 1005 False 870.000000 870 82.840000 3318 4298 1 chr5A.!!$F1 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 849 0.035739 TCGGTGGAGTTAAAGGTGGC 59.964 55.0 0.00 0.00 0.00 5.01 F
1006 1009 0.107993 CTTCTCCTGCTTGATGGCGA 60.108 55.0 0.00 0.00 34.52 5.54 F
1085 1088 0.249784 CAGATCGGGCCTGAGATGTG 60.250 60.0 21.28 17.43 33.02 3.21 F
2775 2813 0.182299 CCTCCCTCTTTCTCCATGCC 59.818 60.0 0.00 0.00 0.00 4.40 F
4159 4428 0.668535 GGGATTGTTTATCTGCCGGC 59.331 55.0 22.73 22.73 33.53 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1759 0.670546 CAGTTTGTCGGACGGCATCT 60.671 55.000 0.00 0.0 0.00 2.90 R
2775 2813 1.303074 ACAGAGGTGGTGCTGCATG 60.303 57.895 5.27 0.0 35.57 4.06 R
2884 2922 1.816224 AGTTGCAGTTGAAACACGGTT 59.184 42.857 5.81 0.0 36.01 4.44 R
4550 4824 0.038801 GCCTTGCCTTCAAAGTGAGC 60.039 55.000 0.00 0.0 0.00 4.26 R
5600 5880 0.588252 AGACGTGACATTGTGCTTGC 59.412 50.000 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.744559 GGTGCAAGCGGAAACAGA 58.255 55.556 0.00 0.00 0.00 3.41
33 34 1.282875 GGTGCAAGCGGAAACAGAC 59.717 57.895 0.00 0.00 0.00 3.51
34 35 1.444119 GGTGCAAGCGGAAACAGACA 61.444 55.000 0.00 0.00 0.00 3.41
35 36 0.593128 GTGCAAGCGGAAACAGACAT 59.407 50.000 0.00 0.00 0.00 3.06
36 37 1.804151 GTGCAAGCGGAAACAGACATA 59.196 47.619 0.00 0.00 0.00 2.29
37 38 2.420022 GTGCAAGCGGAAACAGACATAT 59.580 45.455 0.00 0.00 0.00 1.78
38 39 2.419673 TGCAAGCGGAAACAGACATATG 59.580 45.455 0.00 0.00 0.00 1.78
39 40 2.223340 GCAAGCGGAAACAGACATATGG 60.223 50.000 7.80 0.00 0.00 2.74
40 41 2.332063 AGCGGAAACAGACATATGGG 57.668 50.000 7.80 0.00 0.00 4.00
41 42 1.837439 AGCGGAAACAGACATATGGGA 59.163 47.619 7.80 0.00 0.00 4.37
42 43 2.439507 AGCGGAAACAGACATATGGGAT 59.560 45.455 7.80 0.00 0.00 3.85
43 44 2.549754 GCGGAAACAGACATATGGGATG 59.450 50.000 7.80 5.20 0.00 3.51
44 45 3.744214 GCGGAAACAGACATATGGGATGA 60.744 47.826 7.80 0.00 0.00 2.92
45 46 4.645535 CGGAAACAGACATATGGGATGAT 58.354 43.478 7.80 0.00 0.00 2.45
46 47 4.453478 CGGAAACAGACATATGGGATGATG 59.547 45.833 7.80 0.00 0.00 3.07
47 48 4.217118 GGAAACAGACATATGGGATGATGC 59.783 45.833 7.80 0.00 0.00 3.91
48 49 4.719026 AACAGACATATGGGATGATGCT 57.281 40.909 7.80 0.00 0.00 3.79
49 50 4.719026 ACAGACATATGGGATGATGCTT 57.281 40.909 7.80 0.00 0.00 3.91
50 51 4.395625 ACAGACATATGGGATGATGCTTG 58.604 43.478 7.80 0.00 0.00 4.01
51 52 4.103627 ACAGACATATGGGATGATGCTTGA 59.896 41.667 7.80 0.00 0.00 3.02
52 53 5.222068 ACAGACATATGGGATGATGCTTGAT 60.222 40.000 7.80 0.00 0.00 2.57
53 54 6.013119 ACAGACATATGGGATGATGCTTGATA 60.013 38.462 7.80 0.00 0.00 2.15
54 55 6.539103 CAGACATATGGGATGATGCTTGATAG 59.461 42.308 7.80 0.00 0.00 2.08
55 56 6.442885 AGACATATGGGATGATGCTTGATAGA 59.557 38.462 7.80 0.00 0.00 1.98
56 57 7.127493 AGACATATGGGATGATGCTTGATAGAT 59.873 37.037 7.80 0.00 0.00 1.98
57 58 7.640313 ACATATGGGATGATGCTTGATAGATT 58.360 34.615 7.80 0.00 0.00 2.40
58 59 8.775151 ACATATGGGATGATGCTTGATAGATTA 58.225 33.333 7.80 0.00 0.00 1.75
59 60 9.623000 CATATGGGATGATGCTTGATAGATTAA 57.377 33.333 0.00 0.00 0.00 1.40
60 61 7.934855 ATGGGATGATGCTTGATAGATTAAC 57.065 36.000 0.00 0.00 0.00 2.01
61 62 6.840527 TGGGATGATGCTTGATAGATTAACA 58.159 36.000 0.00 0.00 0.00 2.41
62 63 7.289310 TGGGATGATGCTTGATAGATTAACAA 58.711 34.615 0.00 0.00 0.00 2.83
63 64 7.779326 TGGGATGATGCTTGATAGATTAACAAA 59.221 33.333 0.00 0.00 0.00 2.83
64 65 8.632679 GGGATGATGCTTGATAGATTAACAAAA 58.367 33.333 0.00 0.00 0.00 2.44
83 84 7.709149 ACAAAATCTAAAGGAGGAAGAATGG 57.291 36.000 0.00 0.00 0.00 3.16
84 85 7.470192 ACAAAATCTAAAGGAGGAAGAATGGA 58.530 34.615 0.00 0.00 0.00 3.41
85 86 7.613411 ACAAAATCTAAAGGAGGAAGAATGGAG 59.387 37.037 0.00 0.00 0.00 3.86
86 87 7.516450 AAATCTAAAGGAGGAAGAATGGAGA 57.484 36.000 0.00 0.00 0.00 3.71
87 88 7.704359 AATCTAAAGGAGGAAGAATGGAGAT 57.296 36.000 0.00 0.00 0.00 2.75
88 89 6.739331 TCTAAAGGAGGAAGAATGGAGATC 57.261 41.667 0.00 0.00 0.00 2.75
89 90 4.787135 AAAGGAGGAAGAATGGAGATCC 57.213 45.455 0.00 0.00 0.00 3.36
101 102 3.008835 TGGAGATCCATTTTGAGGCAG 57.991 47.619 0.00 0.00 42.01 4.85
102 103 2.305009 GGAGATCCATTTTGAGGCAGG 58.695 52.381 0.00 0.00 35.64 4.85
103 104 2.357569 GGAGATCCATTTTGAGGCAGGT 60.358 50.000 0.00 0.00 35.64 4.00
104 105 3.359950 GAGATCCATTTTGAGGCAGGTT 58.640 45.455 0.00 0.00 0.00 3.50
105 106 3.766051 GAGATCCATTTTGAGGCAGGTTT 59.234 43.478 0.00 0.00 0.00 3.27
106 107 4.934356 AGATCCATTTTGAGGCAGGTTTA 58.066 39.130 0.00 0.00 0.00 2.01
107 108 5.332743 AGATCCATTTTGAGGCAGGTTTAA 58.667 37.500 0.00 0.00 0.00 1.52
108 109 5.779771 AGATCCATTTTGAGGCAGGTTTAAA 59.220 36.000 0.00 0.00 0.00 1.52
109 110 5.878406 TCCATTTTGAGGCAGGTTTAAAA 57.122 34.783 0.00 0.00 0.00 1.52
110 111 6.240549 TCCATTTTGAGGCAGGTTTAAAAA 57.759 33.333 0.00 0.00 0.00 1.94
111 112 6.287525 TCCATTTTGAGGCAGGTTTAAAAAG 58.712 36.000 0.00 0.00 0.00 2.27
112 113 5.469760 CCATTTTGAGGCAGGTTTAAAAAGG 59.530 40.000 0.00 0.00 0.00 3.11
113 114 3.744238 TTGAGGCAGGTTTAAAAAGGC 57.256 42.857 0.00 0.00 0.00 4.35
114 115 1.967779 TGAGGCAGGTTTAAAAAGGCC 59.032 47.619 14.29 14.29 41.65 5.19
115 116 1.967779 GAGGCAGGTTTAAAAAGGCCA 59.032 47.619 20.77 0.00 43.72 5.36
116 117 1.691976 AGGCAGGTTTAAAAAGGCCAC 59.308 47.619 20.77 0.00 43.72 5.01
117 118 1.604438 GGCAGGTTTAAAAAGGCCACG 60.604 52.381 5.01 0.00 41.02 4.94
118 119 1.067974 GCAGGTTTAAAAAGGCCACGT 59.932 47.619 5.01 0.00 0.00 4.49
119 120 2.738135 CAGGTTTAAAAAGGCCACGTG 58.262 47.619 9.08 9.08 0.00 4.49
120 121 2.359531 CAGGTTTAAAAAGGCCACGTGA 59.640 45.455 19.30 0.00 0.00 4.35
121 122 3.005367 CAGGTTTAAAAAGGCCACGTGAT 59.995 43.478 19.30 0.00 0.00 3.06
122 123 3.005367 AGGTTTAAAAAGGCCACGTGATG 59.995 43.478 19.30 1.58 0.00 3.07
123 124 2.715737 TTAAAAAGGCCACGTGATGC 57.284 45.000 19.30 12.98 0.00 3.91
124 125 1.904287 TAAAAAGGCCACGTGATGCT 58.096 45.000 19.30 0.00 0.00 3.79
125 126 1.904287 AAAAAGGCCACGTGATGCTA 58.096 45.000 19.30 0.00 0.00 3.49
126 127 1.165270 AAAAGGCCACGTGATGCTAC 58.835 50.000 19.30 0.99 0.00 3.58
127 128 0.036164 AAAGGCCACGTGATGCTACA 59.964 50.000 19.30 0.00 0.00 2.74
128 129 0.391661 AAGGCCACGTGATGCTACAG 60.392 55.000 19.30 0.00 0.00 2.74
129 130 1.218047 GGCCACGTGATGCTACAGA 59.782 57.895 19.30 0.00 0.00 3.41
130 131 0.807667 GGCCACGTGATGCTACAGAG 60.808 60.000 19.30 0.00 0.00 3.35
131 132 0.108615 GCCACGTGATGCTACAGAGT 60.109 55.000 19.30 0.00 0.00 3.24
132 133 1.914634 CCACGTGATGCTACAGAGTC 58.085 55.000 19.30 0.00 0.00 3.36
133 134 1.202348 CCACGTGATGCTACAGAGTCA 59.798 52.381 19.30 0.00 0.00 3.41
134 135 2.524034 CACGTGATGCTACAGAGTCAG 58.476 52.381 10.90 0.00 0.00 3.51
135 136 1.135257 ACGTGATGCTACAGAGTCAGC 60.135 52.381 0.00 0.00 38.31 4.26
136 137 1.800655 CGTGATGCTACAGAGTCAGCC 60.801 57.143 0.00 0.00 36.95 4.85
137 138 1.205655 GTGATGCTACAGAGTCAGCCA 59.794 52.381 0.00 0.00 36.95 4.75
138 139 1.901833 TGATGCTACAGAGTCAGCCAA 59.098 47.619 0.00 0.00 36.95 4.52
139 140 2.093816 TGATGCTACAGAGTCAGCCAAG 60.094 50.000 0.00 0.00 36.95 3.61
140 141 1.342074 TGCTACAGAGTCAGCCAAGT 58.658 50.000 0.00 0.00 36.95 3.16
141 142 1.694150 TGCTACAGAGTCAGCCAAGTT 59.306 47.619 0.00 0.00 36.95 2.66
142 143 2.897326 TGCTACAGAGTCAGCCAAGTTA 59.103 45.455 0.00 0.00 36.95 2.24
143 144 3.056536 TGCTACAGAGTCAGCCAAGTTAG 60.057 47.826 0.00 0.00 36.95 2.34
144 145 3.056465 GCTACAGAGTCAGCCAAGTTAGT 60.056 47.826 0.00 0.00 0.00 2.24
145 146 4.158025 GCTACAGAGTCAGCCAAGTTAGTA 59.842 45.833 0.00 0.00 0.00 1.82
146 147 5.163499 GCTACAGAGTCAGCCAAGTTAGTAT 60.163 44.000 0.00 0.00 0.00 2.12
147 148 5.331876 ACAGAGTCAGCCAAGTTAGTATC 57.668 43.478 0.00 0.00 0.00 2.24
148 149 4.772624 ACAGAGTCAGCCAAGTTAGTATCA 59.227 41.667 0.00 0.00 0.00 2.15
149 150 5.246203 ACAGAGTCAGCCAAGTTAGTATCAA 59.754 40.000 0.00 0.00 0.00 2.57
150 151 6.166279 CAGAGTCAGCCAAGTTAGTATCAAA 58.834 40.000 0.00 0.00 0.00 2.69
151 152 6.312426 CAGAGTCAGCCAAGTTAGTATCAAAG 59.688 42.308 0.00 0.00 0.00 2.77
152 153 5.491982 AGTCAGCCAAGTTAGTATCAAAGG 58.508 41.667 0.00 0.00 0.00 3.11
153 154 4.095036 GTCAGCCAAGTTAGTATCAAAGGC 59.905 45.833 0.00 0.00 41.08 4.35
154 155 4.009675 CAGCCAAGTTAGTATCAAAGGCA 58.990 43.478 0.00 0.00 43.13 4.75
155 156 4.095483 CAGCCAAGTTAGTATCAAAGGCAG 59.905 45.833 0.00 0.00 43.13 4.85
156 157 4.010349 GCCAAGTTAGTATCAAAGGCAGT 58.990 43.478 0.00 0.00 40.50 4.40
157 158 4.095036 GCCAAGTTAGTATCAAAGGCAGTC 59.905 45.833 0.00 0.00 40.50 3.51
158 159 4.330074 CCAAGTTAGTATCAAAGGCAGTCG 59.670 45.833 0.00 0.00 0.00 4.18
159 160 4.803098 AGTTAGTATCAAAGGCAGTCGT 57.197 40.909 0.00 0.00 0.00 4.34
160 161 5.148651 AGTTAGTATCAAAGGCAGTCGTT 57.851 39.130 0.00 0.00 0.00 3.85
161 162 6.276832 AGTTAGTATCAAAGGCAGTCGTTA 57.723 37.500 0.00 0.00 0.00 3.18
162 163 6.098017 AGTTAGTATCAAAGGCAGTCGTTAC 58.902 40.000 0.00 0.00 0.00 2.50
163 164 3.858247 AGTATCAAAGGCAGTCGTTACC 58.142 45.455 0.00 0.00 0.00 2.85
164 165 1.722011 ATCAAAGGCAGTCGTTACCG 58.278 50.000 0.00 0.00 0.00 4.02
165 166 0.390124 TCAAAGGCAGTCGTTACCGT 59.610 50.000 0.00 0.00 35.01 4.83
166 167 1.202557 TCAAAGGCAGTCGTTACCGTT 60.203 47.619 0.00 0.00 35.01 4.44
167 168 2.035704 TCAAAGGCAGTCGTTACCGTTA 59.964 45.455 0.00 0.00 35.01 3.18
168 169 2.358939 AAGGCAGTCGTTACCGTTAG 57.641 50.000 0.00 0.00 35.01 2.34
169 170 0.529378 AGGCAGTCGTTACCGTTAGG 59.471 55.000 0.00 0.00 45.13 2.69
180 181 3.532896 CCGTTAGGTGTCATGCACT 57.467 52.632 16.34 8.11 46.86 4.40
181 182 1.808411 CCGTTAGGTGTCATGCACTT 58.192 50.000 16.34 12.83 46.86 3.16
182 183 2.967362 CCGTTAGGTGTCATGCACTTA 58.033 47.619 16.34 12.03 46.86 2.24
183 184 3.531538 CCGTTAGGTGTCATGCACTTAT 58.468 45.455 16.34 8.41 46.86 1.73
184 185 3.555956 CCGTTAGGTGTCATGCACTTATC 59.444 47.826 16.34 12.23 46.86 1.75
185 186 3.555956 CGTTAGGTGTCATGCACTTATCC 59.444 47.826 16.34 8.68 46.86 2.59
186 187 4.680708 CGTTAGGTGTCATGCACTTATCCT 60.681 45.833 16.34 9.54 46.86 3.24
187 188 3.550437 AGGTGTCATGCACTTATCCTC 57.450 47.619 16.34 2.76 46.86 3.71
188 189 2.171448 AGGTGTCATGCACTTATCCTCC 59.829 50.000 16.34 2.18 46.86 4.30
189 190 2.565841 GTGTCATGCACTTATCCTCCC 58.434 52.381 11.51 0.00 44.41 4.30
190 191 2.092968 GTGTCATGCACTTATCCTCCCA 60.093 50.000 11.51 0.00 44.41 4.37
191 192 2.575735 TGTCATGCACTTATCCTCCCAA 59.424 45.455 0.00 0.00 0.00 4.12
192 193 2.945668 GTCATGCACTTATCCTCCCAAC 59.054 50.000 0.00 0.00 0.00 3.77
193 194 1.942657 CATGCACTTATCCTCCCAACG 59.057 52.381 0.00 0.00 0.00 4.10
194 195 0.981183 TGCACTTATCCTCCCAACGT 59.019 50.000 0.00 0.00 0.00 3.99
195 196 1.338674 TGCACTTATCCTCCCAACGTG 60.339 52.381 0.00 0.00 0.00 4.49
196 197 2.012051 GCACTTATCCTCCCAACGTGG 61.012 57.143 0.00 0.00 37.25 4.94
197 198 0.252197 ACTTATCCTCCCAACGTGGC 59.748 55.000 0.00 0.00 35.79 5.01
198 199 0.251916 CTTATCCTCCCAACGTGGCA 59.748 55.000 0.00 0.00 35.79 4.92
199 200 0.035820 TTATCCTCCCAACGTGGCAC 60.036 55.000 7.79 7.79 35.79 5.01
200 201 0.907704 TATCCTCCCAACGTGGCACT 60.908 55.000 16.72 0.00 35.79 4.40
201 202 0.907704 ATCCTCCCAACGTGGCACTA 60.908 55.000 16.72 0.00 35.79 2.74
202 203 1.375523 CCTCCCAACGTGGCACTAC 60.376 63.158 16.72 0.00 35.79 2.73
203 204 1.369692 CTCCCAACGTGGCACTACA 59.630 57.895 16.72 0.00 35.79 2.74
204 205 0.949105 CTCCCAACGTGGCACTACAC 60.949 60.000 16.72 0.00 35.79 2.90
205 206 1.964373 CCCAACGTGGCACTACACC 60.964 63.158 16.72 0.00 38.11 4.16
206 207 1.227704 CCAACGTGGCACTACACCA 60.228 57.895 16.72 0.00 38.11 4.17
212 213 3.088259 TGGCACTACACCACAACAC 57.912 52.632 0.00 0.00 30.29 3.32
213 214 0.544223 TGGCACTACACCACAACACT 59.456 50.000 0.00 0.00 30.29 3.55
214 215 1.065053 TGGCACTACACCACAACACTT 60.065 47.619 0.00 0.00 30.29 3.16
215 216 2.170817 TGGCACTACACCACAACACTTA 59.829 45.455 0.00 0.00 30.29 2.24
216 217 3.207778 GGCACTACACCACAACACTTAA 58.792 45.455 0.00 0.00 0.00 1.85
217 218 3.818773 GGCACTACACCACAACACTTAAT 59.181 43.478 0.00 0.00 0.00 1.40
218 219 4.277423 GGCACTACACCACAACACTTAATT 59.723 41.667 0.00 0.00 0.00 1.40
219 220 5.212194 GCACTACACCACAACACTTAATTG 58.788 41.667 0.00 0.00 0.00 2.32
220 221 5.757886 CACTACACCACAACACTTAATTGG 58.242 41.667 0.00 0.00 0.00 3.16
221 222 4.825085 ACTACACCACAACACTTAATTGGG 59.175 41.667 0.00 0.00 0.00 4.12
224 225 1.275010 CCACAACACTTAATTGGGGGC 59.725 52.381 1.20 0.00 45.45 5.80
225 226 1.967066 CACAACACTTAATTGGGGGCA 59.033 47.619 0.00 0.00 0.00 5.36
226 227 2.366916 CACAACACTTAATTGGGGGCAA 59.633 45.455 0.00 0.00 0.00 4.52
227 228 3.007831 CACAACACTTAATTGGGGGCAAT 59.992 43.478 0.00 0.00 0.00 3.56
228 229 3.650461 ACAACACTTAATTGGGGGCAATT 59.350 39.130 0.00 0.00 38.25 2.32
229 230 4.841246 ACAACACTTAATTGGGGGCAATTA 59.159 37.500 0.00 0.00 36.35 1.40
230 231 5.308237 ACAACACTTAATTGGGGGCAATTAA 59.692 36.000 2.12 2.12 41.76 1.40
231 232 5.414789 ACACTTAATTGGGGGCAATTAAC 57.585 39.130 0.00 0.00 40.20 2.01
232 233 5.090845 ACACTTAATTGGGGGCAATTAACT 58.909 37.500 0.00 0.00 40.20 2.24
233 234 5.046663 ACACTTAATTGGGGGCAATTAACTG 60.047 40.000 0.00 5.51 40.20 3.16
234 235 4.081142 ACTTAATTGGGGGCAATTAACTGC 60.081 41.667 0.00 0.00 40.20 4.40
241 242 3.168773 GCAATTAACTGCCGGGAGA 57.831 52.632 31.46 7.80 36.25 3.71
242 243 1.459450 GCAATTAACTGCCGGGAGAA 58.541 50.000 31.46 15.07 36.25 2.87
243 244 1.401905 GCAATTAACTGCCGGGAGAAG 59.598 52.381 31.46 12.54 36.25 2.85
244 245 2.711542 CAATTAACTGCCGGGAGAAGT 58.288 47.619 31.46 16.12 0.00 3.01
245 246 3.869065 CAATTAACTGCCGGGAGAAGTA 58.131 45.455 31.46 15.08 0.00 2.24
246 247 4.451900 CAATTAACTGCCGGGAGAAGTAT 58.548 43.478 31.46 13.60 0.00 2.12
247 248 3.536956 TTAACTGCCGGGAGAAGTATG 57.463 47.619 31.46 1.55 0.00 2.39
248 249 1.276622 AACTGCCGGGAGAAGTATGT 58.723 50.000 31.46 2.32 0.00 2.29
249 250 0.537188 ACTGCCGGGAGAAGTATGTG 59.463 55.000 31.46 0.00 0.00 3.21
250 251 0.824109 CTGCCGGGAGAAGTATGTGA 59.176 55.000 19.84 0.00 0.00 3.58
251 252 1.207089 CTGCCGGGAGAAGTATGTGAA 59.793 52.381 19.84 0.00 0.00 3.18
252 253 1.837439 TGCCGGGAGAAGTATGTGAAT 59.163 47.619 2.18 0.00 0.00 2.57
253 254 3.035363 TGCCGGGAGAAGTATGTGAATA 58.965 45.455 2.18 0.00 0.00 1.75
254 255 3.452990 TGCCGGGAGAAGTATGTGAATAA 59.547 43.478 2.18 0.00 0.00 1.40
255 256 4.058817 GCCGGGAGAAGTATGTGAATAAG 58.941 47.826 2.18 0.00 0.00 1.73
256 257 4.632153 CCGGGAGAAGTATGTGAATAAGG 58.368 47.826 0.00 0.00 0.00 2.69
257 258 4.503296 CCGGGAGAAGTATGTGAATAAGGG 60.503 50.000 0.00 0.00 0.00 3.95
258 259 4.390264 GGGAGAAGTATGTGAATAAGGGC 58.610 47.826 0.00 0.00 0.00 5.19
259 260 4.141482 GGGAGAAGTATGTGAATAAGGGCA 60.141 45.833 0.00 0.00 0.00 5.36
260 261 5.437060 GGAGAAGTATGTGAATAAGGGCAA 58.563 41.667 0.00 0.00 0.00 4.52
261 262 5.885912 GGAGAAGTATGTGAATAAGGGCAAA 59.114 40.000 0.00 0.00 0.00 3.68
262 263 6.547510 GGAGAAGTATGTGAATAAGGGCAAAT 59.452 38.462 0.00 0.00 0.00 2.32
263 264 7.338800 AGAAGTATGTGAATAAGGGCAAATG 57.661 36.000 0.00 0.00 0.00 2.32
264 265 7.118723 AGAAGTATGTGAATAAGGGCAAATGA 58.881 34.615 0.00 0.00 0.00 2.57
265 266 7.781693 AGAAGTATGTGAATAAGGGCAAATGAT 59.218 33.333 0.00 0.00 0.00 2.45
266 267 7.516198 AGTATGTGAATAAGGGCAAATGATC 57.484 36.000 0.00 0.00 0.00 2.92
267 268 7.062322 AGTATGTGAATAAGGGCAAATGATCA 58.938 34.615 0.00 0.00 0.00 2.92
268 269 5.840243 TGTGAATAAGGGCAAATGATCAG 57.160 39.130 0.09 0.00 0.00 2.90
269 270 4.098349 TGTGAATAAGGGCAAATGATCAGC 59.902 41.667 0.09 0.00 0.00 4.26
273 274 3.122850 GGCAAATGATCAGCCGGG 58.877 61.111 8.56 0.00 38.86 5.73
274 275 1.453745 GGCAAATGATCAGCCGGGA 60.454 57.895 8.56 0.00 38.86 5.14
275 276 1.037030 GGCAAATGATCAGCCGGGAA 61.037 55.000 8.56 0.00 38.86 3.97
276 277 0.817013 GCAAATGATCAGCCGGGAAA 59.183 50.000 2.18 0.00 0.00 3.13
277 278 1.469767 GCAAATGATCAGCCGGGAAAC 60.470 52.381 2.18 0.00 0.00 2.78
278 279 2.094675 CAAATGATCAGCCGGGAAACT 58.905 47.619 2.18 0.00 0.00 2.66
279 280 2.493278 CAAATGATCAGCCGGGAAACTT 59.507 45.455 2.18 0.00 0.00 2.66
280 281 1.755179 ATGATCAGCCGGGAAACTTG 58.245 50.000 2.18 0.00 0.00 3.16
281 282 0.400213 TGATCAGCCGGGAAACTTGT 59.600 50.000 2.18 0.00 0.00 3.16
282 283 1.202879 TGATCAGCCGGGAAACTTGTT 60.203 47.619 2.18 0.00 0.00 2.83
283 284 2.039216 TGATCAGCCGGGAAACTTGTTA 59.961 45.455 2.18 0.00 0.00 2.41
284 285 1.886886 TCAGCCGGGAAACTTGTTAC 58.113 50.000 2.18 0.00 0.00 2.50
285 286 1.418637 TCAGCCGGGAAACTTGTTACT 59.581 47.619 2.18 0.00 0.00 2.24
286 287 1.535462 CAGCCGGGAAACTTGTTACTG 59.465 52.381 2.18 0.00 0.00 2.74
287 288 0.240145 GCCGGGAAACTTGTTACTGC 59.760 55.000 2.18 0.00 0.00 4.40
288 289 0.879090 CCGGGAAACTTGTTACTGCC 59.121 55.000 0.00 0.00 0.00 4.85
289 290 0.515564 CGGGAAACTTGTTACTGCCG 59.484 55.000 4.31 4.31 36.43 5.69
290 291 0.879090 GGGAAACTTGTTACTGCCGG 59.121 55.000 0.00 0.00 0.00 6.13
291 292 1.601166 GGAAACTTGTTACTGCCGGT 58.399 50.000 1.90 0.00 0.00 5.28
292 293 2.550639 GGGAAACTTGTTACTGCCGGTA 60.551 50.000 1.90 0.00 0.00 4.02
293 294 2.740447 GGAAACTTGTTACTGCCGGTAG 59.260 50.000 18.97 18.97 0.00 3.18
294 295 3.555586 GGAAACTTGTTACTGCCGGTAGA 60.556 47.826 27.49 7.08 0.00 2.59
295 296 3.756933 AACTTGTTACTGCCGGTAGAA 57.243 42.857 27.49 12.91 0.00 2.10
296 297 3.314541 ACTTGTTACTGCCGGTAGAAG 57.685 47.619 27.49 19.94 32.50 2.85
297 298 2.000447 CTTGTTACTGCCGGTAGAAGC 59.000 52.381 27.49 14.60 0.00 3.86
298 299 0.970640 TGTTACTGCCGGTAGAAGCA 59.029 50.000 27.49 16.90 37.46 3.91
299 300 1.337447 TGTTACTGCCGGTAGAAGCAC 60.337 52.381 27.49 15.64 34.68 4.40
300 301 1.067071 GTTACTGCCGGTAGAAGCACT 60.067 52.381 27.49 4.84 34.68 4.40
301 302 1.263356 TACTGCCGGTAGAAGCACTT 58.737 50.000 27.49 4.05 34.68 3.16
302 303 0.037232 ACTGCCGGTAGAAGCACTTC 60.037 55.000 27.49 2.04 39.78 3.01
303 304 0.037326 CTGCCGGTAGAAGCACTTCA 60.037 55.000 15.37 0.00 41.84 3.02
304 305 0.037326 TGCCGGTAGAAGCACTTCAG 60.037 55.000 12.65 1.70 41.84 3.02
305 306 0.741221 GCCGGTAGAAGCACTTCAGG 60.741 60.000 12.65 10.38 41.84 3.86
306 307 0.108138 CCGGTAGAAGCACTTCAGGG 60.108 60.000 12.65 4.39 41.84 4.45
307 308 0.741221 CGGTAGAAGCACTTCAGGGC 60.741 60.000 12.65 0.00 41.84 5.19
308 309 0.324943 GGTAGAAGCACTTCAGGGCA 59.675 55.000 12.65 0.00 41.84 5.36
309 310 1.677217 GGTAGAAGCACTTCAGGGCAG 60.677 57.143 12.65 0.00 41.84 4.85
310 311 1.276421 GTAGAAGCACTTCAGGGCAGA 59.724 52.381 12.65 0.00 41.84 4.26
311 312 0.767375 AGAAGCACTTCAGGGCAGAA 59.233 50.000 12.65 0.00 41.84 3.02
312 313 1.143684 AGAAGCACTTCAGGGCAGAAA 59.856 47.619 12.65 0.00 41.84 2.52
313 314 1.956477 GAAGCACTTCAGGGCAGAAAA 59.044 47.619 3.36 0.00 39.31 2.29
314 315 2.071778 AGCACTTCAGGGCAGAAAAA 57.928 45.000 3.36 0.00 0.00 1.94
315 316 1.683385 AGCACTTCAGGGCAGAAAAAC 59.317 47.619 3.36 0.00 0.00 2.43
316 317 1.683385 GCACTTCAGGGCAGAAAAACT 59.317 47.619 0.00 0.00 0.00 2.66
317 318 7.947620 GAAGCACTTCAGGGCAGAAAAACTG 62.948 48.000 3.36 0.00 42.61 3.16
328 329 3.744660 CAGAAAAACTGCCAGTAGGACT 58.255 45.455 0.00 0.00 39.86 3.85
329 330 4.137543 CAGAAAAACTGCCAGTAGGACTT 58.862 43.478 0.00 0.00 39.86 3.01
330 331 4.023707 CAGAAAAACTGCCAGTAGGACTTG 60.024 45.833 0.00 0.00 39.86 3.16
331 332 2.568623 AAACTGCCAGTAGGACTTGG 57.431 50.000 0.00 0.00 36.89 3.61
332 333 0.036875 AACTGCCAGTAGGACTTGGC 59.963 55.000 0.00 8.49 40.45 4.52
333 334 1.448540 CTGCCAGTAGGACTTGGCG 60.449 63.158 10.54 2.72 41.85 5.69
334 335 1.888436 CTGCCAGTAGGACTTGGCGA 61.888 60.000 10.54 0.45 41.85 5.54
335 336 1.295423 GCCAGTAGGACTTGGCGAA 59.705 57.895 0.00 0.00 34.49 4.70
336 337 0.107654 GCCAGTAGGACTTGGCGAAT 60.108 55.000 0.00 0.00 34.49 3.34
337 338 1.138266 GCCAGTAGGACTTGGCGAATA 59.862 52.381 0.00 0.00 34.49 1.75
338 339 2.419574 GCCAGTAGGACTTGGCGAATAA 60.420 50.000 0.00 0.00 34.49 1.40
339 340 3.458189 CCAGTAGGACTTGGCGAATAAG 58.542 50.000 0.00 0.00 36.89 1.73
340 341 3.458189 CAGTAGGACTTGGCGAATAAGG 58.542 50.000 0.00 0.00 0.00 2.69
341 342 2.434702 AGTAGGACTTGGCGAATAAGGG 59.565 50.000 0.00 0.00 0.00 3.95
342 343 0.107165 AGGACTTGGCGAATAAGGGC 60.107 55.000 0.00 0.00 0.00 5.19
343 344 0.393808 GGACTTGGCGAATAAGGGCA 60.394 55.000 0.00 0.00 38.28 5.36
344 345 1.680338 GACTTGGCGAATAAGGGCAT 58.320 50.000 0.00 0.00 39.86 4.40
345 346 2.486548 GGACTTGGCGAATAAGGGCATA 60.487 50.000 0.00 0.00 39.86 3.14
346 347 2.808543 GACTTGGCGAATAAGGGCATAG 59.191 50.000 0.00 0.00 39.86 2.23
347 348 2.438021 ACTTGGCGAATAAGGGCATAGA 59.562 45.455 0.00 0.00 39.86 1.98
348 349 3.118038 ACTTGGCGAATAAGGGCATAGAA 60.118 43.478 0.00 0.00 39.86 2.10
349 350 3.569194 TGGCGAATAAGGGCATAGAAA 57.431 42.857 0.00 0.00 34.77 2.52
350 351 3.211045 TGGCGAATAAGGGCATAGAAAC 58.789 45.455 0.00 0.00 34.77 2.78
351 352 3.118038 TGGCGAATAAGGGCATAGAAACT 60.118 43.478 0.00 0.00 34.77 2.66
352 353 3.251004 GGCGAATAAGGGCATAGAAACTG 59.749 47.826 0.00 0.00 0.00 3.16
353 354 3.304057 GCGAATAAGGGCATAGAAACTGC 60.304 47.826 0.00 0.00 38.93 4.40
358 359 3.903783 GCATAGAAACTGCCGGCA 58.096 55.556 30.59 30.59 33.44 5.69
359 360 2.179764 GCATAGAAACTGCCGGCAA 58.820 52.632 32.09 15.48 33.44 4.52
360 361 0.740737 GCATAGAAACTGCCGGCAAT 59.259 50.000 32.09 20.27 33.44 3.56
361 362 1.534595 GCATAGAAACTGCCGGCAATG 60.535 52.381 32.09 28.14 33.44 2.82
362 363 1.066002 CATAGAAACTGCCGGCAATGG 59.934 52.381 32.09 21.62 0.00 3.16
363 364 0.037590 TAGAAACTGCCGGCAATGGT 59.962 50.000 32.09 22.37 0.00 3.55
364 365 1.080569 GAAACTGCCGGCAATGGTG 60.081 57.895 32.09 20.81 0.00 4.17
365 366 1.805428 GAAACTGCCGGCAATGGTGT 61.805 55.000 32.09 21.55 0.00 4.16
366 367 1.805428 AAACTGCCGGCAATGGTGTC 61.805 55.000 32.09 0.00 0.00 3.67
367 368 3.443045 CTGCCGGCAATGGTGTCC 61.443 66.667 32.09 0.00 0.00 4.02
368 369 4.277009 TGCCGGCAATGGTGTCCA 62.277 61.111 30.74 0.00 38.19 4.02
369 370 3.747976 GCCGGCAATGGTGTCCAC 61.748 66.667 24.80 0.00 35.80 4.02
370 371 3.430862 CCGGCAATGGTGTCCACG 61.431 66.667 0.00 0.00 35.80 4.94
371 372 2.668212 CGGCAATGGTGTCCACGT 60.668 61.111 0.00 0.00 35.80 4.49
372 373 2.258013 CGGCAATGGTGTCCACGTT 61.258 57.895 0.00 0.00 35.80 3.99
373 374 1.285641 GGCAATGGTGTCCACGTTG 59.714 57.895 8.80 8.80 35.80 4.10
374 375 1.169661 GGCAATGGTGTCCACGTTGA 61.170 55.000 14.48 0.00 35.80 3.18
375 376 0.665835 GCAATGGTGTCCACGTTGAA 59.334 50.000 14.48 0.00 35.80 2.69
376 377 1.334960 GCAATGGTGTCCACGTTGAAG 60.335 52.381 14.48 0.00 35.80 3.02
377 378 1.266718 CAATGGTGTCCACGTTGAAGG 59.733 52.381 7.86 0.00 35.80 3.46
378 379 0.250727 ATGGTGTCCACGTTGAAGGG 60.251 55.000 0.00 0.00 35.80 3.95
379 380 2.258726 GGTGTCCACGTTGAAGGGC 61.259 63.158 0.00 0.00 0.00 5.19
380 381 2.280524 TGTCCACGTTGAAGGGCG 60.281 61.111 0.00 0.00 30.25 6.13
381 382 3.723348 GTCCACGTTGAAGGGCGC 61.723 66.667 0.00 0.00 0.00 6.53
382 383 4.243008 TCCACGTTGAAGGGCGCA 62.243 61.111 10.83 0.00 0.00 6.09
383 384 3.055719 CCACGTTGAAGGGCGCAT 61.056 61.111 10.83 0.00 0.00 4.73
384 385 2.625823 CCACGTTGAAGGGCGCATT 61.626 57.895 10.83 2.51 0.00 3.56
385 386 1.302383 CCACGTTGAAGGGCGCATTA 61.302 55.000 10.83 0.00 0.00 1.90
386 387 0.732571 CACGTTGAAGGGCGCATTAT 59.267 50.000 10.83 0.00 0.00 1.28
387 388 1.014352 ACGTTGAAGGGCGCATTATC 58.986 50.000 10.83 1.89 0.00 1.75
388 389 1.299541 CGTTGAAGGGCGCATTATCT 58.700 50.000 10.83 0.00 0.00 1.98
389 390 1.003545 CGTTGAAGGGCGCATTATCTG 60.004 52.381 10.83 0.00 0.00 2.90
403 404 3.985019 TTATCTGCCGGGACAAGTAAA 57.015 42.857 2.18 0.00 0.00 2.01
437 438 0.322098 TGCCGGGACAAGTAACCATG 60.322 55.000 2.18 0.00 0.00 3.66
466 468 2.350498 ACGCGAGACCGAAATAAATTGG 59.650 45.455 15.93 0.00 38.22 3.16
504 506 2.672996 GCAAAAGCCCGCCAGAGA 60.673 61.111 0.00 0.00 0.00 3.10
514 516 2.687935 GCCCGCCAGAGATGAAAATTTA 59.312 45.455 0.00 0.00 0.00 1.40
519 521 4.098416 GCCAGAGATGAAAATTTACGCAC 58.902 43.478 0.00 0.00 0.00 5.34
521 523 4.334443 CAGAGATGAAAATTTACGCACCG 58.666 43.478 0.00 0.00 0.00 4.94
525 527 2.906153 TGAAAATTTACGCACCGAACG 58.094 42.857 0.00 0.00 0.00 3.95
534 536 1.134694 GCACCGAACGAAGATTGGC 59.865 57.895 0.00 0.00 37.36 4.52
537 539 2.387445 CCGAACGAAGATTGGCGCA 61.387 57.895 10.83 0.00 0.00 6.09
586 588 0.334676 TCCAAATCGCCCCCAAATCT 59.665 50.000 0.00 0.00 0.00 2.40
599 601 3.198068 CCCAAATCTAGTCCGATGTGTG 58.802 50.000 0.00 0.00 28.49 3.82
702 704 2.703007 GCCTCCTCCATCTGACTATGTT 59.297 50.000 0.00 0.00 0.00 2.71
722 724 4.431131 CACCCCCAAGCAGCGGAT 62.431 66.667 0.00 0.00 0.00 4.18
738 740 1.453379 GATCGTCCGTCCCCTCTCA 60.453 63.158 0.00 0.00 0.00 3.27
742 744 3.596799 TCCGTCCCCTCTCACCCA 61.597 66.667 0.00 0.00 0.00 4.51
770 773 2.265739 GCCTCCTCACATGCGTCA 59.734 61.111 0.00 0.00 0.00 4.35
790 793 1.341531 ACCGCATCCCTTATCTTCTCG 59.658 52.381 0.00 0.00 0.00 4.04
819 822 0.250727 CCTCTTTCTTTCGCCCCACA 60.251 55.000 0.00 0.00 0.00 4.17
820 823 1.614317 CCTCTTTCTTTCGCCCCACAT 60.614 52.381 0.00 0.00 0.00 3.21
842 845 1.405661 GCCTCTCGGTGGAGTTAAAGG 60.406 57.143 0.00 0.00 41.26 3.11
845 848 1.621814 TCTCGGTGGAGTTAAAGGTGG 59.378 52.381 0.00 0.00 41.26 4.61
846 849 0.035739 TCGGTGGAGTTAAAGGTGGC 59.964 55.000 0.00 0.00 0.00 5.01
852 855 4.368315 GTGGAGTTAAAGGTGGCTTTTTG 58.632 43.478 0.00 0.00 0.00 2.44
871 874 1.374758 GTGAAGAGGAGGTGTGGCG 60.375 63.158 0.00 0.00 0.00 5.69
919 922 0.942962 CAGCCGGATGATTCTGAAGC 59.057 55.000 16.48 0.00 0.00 3.86
939 942 1.522580 GCTGGATCTGAAGCGGGAC 60.523 63.158 0.00 0.00 0.00 4.46
957 960 2.224217 CGATGTCGCCGTGTAGCTG 61.224 63.158 0.00 0.00 0.00 4.24
1001 1004 1.222936 CGGCCTTCTCCTGCTTGAT 59.777 57.895 0.00 0.00 0.00 2.57
1003 1006 0.750911 GGCCTTCTCCTGCTTGATGG 60.751 60.000 0.00 0.00 0.00 3.51
1006 1009 0.107993 CTTCTCCTGCTTGATGGCGA 60.108 55.000 0.00 0.00 34.52 5.54
1020 1023 4.104633 GCGACAGCGACGAACACG 62.105 66.667 0.00 0.00 40.82 4.49
1082 1085 3.882825 CCAGATCGGGCCTGAGAT 58.117 61.111 21.28 14.01 33.65 2.75
1085 1088 0.249784 CAGATCGGGCCTGAGATGTG 60.250 60.000 21.28 17.43 33.02 3.21
1086 1089 1.596477 GATCGGGCCTGAGATGTGC 60.596 63.158 21.28 1.22 0.00 4.57
1087 1090 2.315781 GATCGGGCCTGAGATGTGCA 62.316 60.000 21.28 0.00 0.00 4.57
1221 1224 2.976903 GCGGCATCTCCTCCATGC 60.977 66.667 0.00 0.00 45.13 4.06
1251 1254 1.300931 GTCCTCTGCTGCGTCAACA 60.301 57.895 0.00 0.00 0.00 3.33
1263 1266 0.865111 CGTCAACAGCGAATTGTGGA 59.135 50.000 0.00 0.00 0.00 4.02
1488 1491 6.115448 ACTCCTTCAGCTACTGTTAATTGT 57.885 37.500 0.00 0.00 32.61 2.71
1489 1492 6.534634 ACTCCTTCAGCTACTGTTAATTGTT 58.465 36.000 0.00 0.00 32.61 2.83
1490 1493 6.428159 ACTCCTTCAGCTACTGTTAATTGTTG 59.572 38.462 0.00 0.00 32.61 3.33
1491 1494 6.530120 TCCTTCAGCTACTGTTAATTGTTGA 58.470 36.000 0.00 0.00 32.61 3.18
1492 1495 6.426937 TCCTTCAGCTACTGTTAATTGTTGAC 59.573 38.462 0.00 0.00 32.61 3.18
1512 1515 7.653713 TGTTGACTTGTTGTTGTTGTTGTTATT 59.346 29.630 0.00 0.00 0.00 1.40
1526 1529 4.343526 TGTTGTTATTTGAACATGCTGGGT 59.656 37.500 0.00 0.00 0.00 4.51
1557 1560 8.369424 TGTAGGAGTACTTGTATTGTTGCTTAA 58.631 33.333 0.00 0.00 0.00 1.85
1578 1586 9.801873 GCTTAAATATTTGCTTGGAGTAAATGA 57.198 29.630 11.05 1.03 40.06 2.57
1751 1759 9.276590 CAAATTGGATAATGCTAGATAGTGTGA 57.723 33.333 0.00 0.00 0.00 3.58
1788 1796 2.436646 GGCACATCCACCTCCGTG 60.437 66.667 0.00 0.00 39.91 4.94
1800 1808 2.280524 TCCGTGCCACTGTTTCCG 60.281 61.111 0.00 0.00 0.00 4.30
1861 1871 2.147958 GTGTTGGCAGGTGACGAAATA 58.852 47.619 0.00 0.00 0.00 1.40
1920 1930 2.755952 AGGAAGGCAGGAACAACTTT 57.244 45.000 0.00 0.00 0.00 2.66
1933 1943 4.626172 GGAACAACTTTCATCCTCGACTAC 59.374 45.833 0.00 0.00 0.00 2.73
1949 1959 1.078823 ACTACTCATCCCCACCTGTGA 59.921 52.381 0.00 0.00 0.00 3.58
2169 2179 8.720562 CACACTATTTGTCTGTCACATTTGATA 58.279 33.333 0.00 0.00 35.67 2.15
2229 2239 8.633075 ACTCACAAATCACAACACTTAATTTG 57.367 30.769 0.00 0.00 41.08 2.32
2616 2652 7.254863 GGAGTAGTAGATACGCTAGATAATGCC 60.255 44.444 0.00 0.00 39.55 4.40
2617 2653 7.110810 AGTAGTAGATACGCTAGATAATGCCA 58.889 38.462 0.00 0.00 39.55 4.92
2775 2813 0.182299 CCTCCCTCTTTCTCCATGCC 59.818 60.000 0.00 0.00 0.00 4.40
2796 2834 1.526917 GCAGCACCACCTCTGTGTT 60.527 57.895 0.00 0.00 41.09 3.32
2884 2922 8.484214 AGCTCATTAGAGTGTAGATTGGATAA 57.516 34.615 0.00 0.00 44.00 1.75
2960 3096 5.885912 TCTGTACCTGCTCCCAATTTATTTC 59.114 40.000 0.00 0.00 0.00 2.17
3309 3534 1.014564 GGTGCACTTGGAGAGTACGC 61.015 60.000 17.98 0.00 36.65 4.42
3659 3892 2.620115 ACAAGTTGCTGGAGTGACAATG 59.380 45.455 1.81 0.00 0.00 2.82
3716 3951 6.047231 AGACATCGGCAAGTTTTATACTACC 58.953 40.000 0.00 0.00 35.54 3.18
3930 4195 4.867047 GTGATCTGTCATGTCTGTTCGAAT 59.133 41.667 0.00 0.00 36.60 3.34
4122 4391 1.696884 TGCCGGCAGATATAATGGTCA 59.303 47.619 29.03 0.00 0.00 4.02
4159 4428 0.668535 GGGATTGTTTATCTGCCGGC 59.331 55.000 22.73 22.73 33.53 6.13
4180 4449 2.305607 AAGTAATCCCCGGCAGCCA 61.306 57.895 13.30 0.00 0.00 4.75
4214 4483 2.964209 TCTATCTGCCGGGAGAATCTT 58.036 47.619 30.44 15.83 33.73 2.40
4259 4528 1.895020 TAAGTGCGTTCTCCCGGCAT 61.895 55.000 0.00 0.00 39.14 4.40
4264 4533 1.145803 GCGTTCTCCCGGCATATTAC 58.854 55.000 0.00 0.00 0.00 1.89
4319 4588 5.814705 GTGGATCCAGTACAAGAATGAGAAG 59.185 44.000 16.81 0.00 0.00 2.85
4326 4595 6.093219 CCAGTACAAGAATGAGAAGGACAATG 59.907 42.308 0.00 0.00 0.00 2.82
4479 4753 3.609853 TCAAGTTGGATCCGAAAGATGG 58.390 45.455 2.22 0.00 34.42 3.51
4494 4768 4.853924 AAGATGGTGCAACTAAACAAGG 57.146 40.909 2.04 0.00 36.74 3.61
4526 4800 2.462456 TTTTCAGTCTGCTCTGCGAT 57.538 45.000 0.00 0.00 35.63 4.58
4550 4824 9.543783 GATAGTATTGGTACCACCTTAGAAAAG 57.456 37.037 16.04 0.00 39.58 2.27
4644 4919 7.016858 AGACTGGATAACCCTTGTTAAACACTA 59.983 37.037 0.00 0.00 40.21 2.74
4662 4937 6.137794 ACACTAGTCTGATCCAAAGTATCG 57.862 41.667 0.00 0.00 0.00 2.92
4681 4956 8.530804 AGTATCGGGTAGGGTATATGTATTTC 57.469 38.462 0.00 0.00 0.00 2.17
4686 4961 7.622081 TCGGGTAGGGTATATGTATTTCATCAT 59.378 37.037 0.00 0.00 37.91 2.45
4753 5028 8.251721 TGTATCTTCTTCTAGGCTAACTGTTTC 58.748 37.037 0.00 0.00 0.00 2.78
4809 5084 5.655090 TCCAACAGACAATAGGATCTCGTAA 59.345 40.000 0.00 0.00 0.00 3.18
4923 5200 4.699522 GAGGAAAGCCCGTGCGGT 62.700 66.667 9.90 0.00 44.33 5.68
4942 5219 3.028130 GGTCCAAAAAGAACCTGAACCA 58.972 45.455 0.00 0.00 0.00 3.67
4952 5229 4.398319 AGAACCTGAACCAAATGTAGTGG 58.602 43.478 0.00 0.00 42.28 4.00
4997 5274 0.661552 CAAGATGAAGGGCATGAGCG 59.338 55.000 0.00 0.00 43.41 5.03
5011 5288 2.203195 AGCGCACCAGTTCAAGCA 60.203 55.556 11.47 0.00 0.00 3.91
5032 5309 4.561734 GCAGCTGTTGTAAGTCCTTACTCT 60.562 45.833 16.64 5.30 44.21 3.24
5042 5320 3.252351 AGTCCTTACTCTTCCTGCCTTT 58.748 45.455 0.00 0.00 0.00 3.11
5049 5327 1.538950 CTCTTCCTGCCTTTGAACTGC 59.461 52.381 0.00 0.00 0.00 4.40
5053 5331 1.035139 CCTGCCTTTGAACTGCTTGT 58.965 50.000 0.00 0.00 0.00 3.16
5062 5340 4.875544 TTGAACTGCTTGTTACTGTGAC 57.124 40.909 0.00 0.00 39.30 3.67
5075 5353 7.485418 TGTTACTGTGACGTGTTCATTTAAT 57.515 32.000 0.00 0.00 36.32 1.40
5227 5505 0.749818 ATGTTCACGTGTGCCCACAA 60.750 50.000 16.51 0.00 43.77 3.33
5228 5506 0.960861 TGTTCACGTGTGCCCACAAA 60.961 50.000 16.51 0.00 43.77 2.83
5242 5520 4.955450 TGCCCACAAAATGATACAATAGCT 59.045 37.500 0.00 0.00 0.00 3.32
5549 5829 6.036470 ACAAGTTTAAACTTTCAGCAAGCTC 58.964 36.000 27.12 0.00 46.52 4.09
5564 5844 4.082354 AGCAAGCTCTGGAACAAATGATTC 60.082 41.667 0.00 0.00 38.70 2.52
5570 5850 7.114754 AGCTCTGGAACAAATGATTCAATAGA 58.885 34.615 0.00 0.00 38.70 1.98
5600 5880 0.824109 TGAAGGTGATGAGGCTACCG 59.176 55.000 0.00 0.00 39.46 4.02
5603 5883 1.220749 GGTGATGAGGCTACCGCAA 59.779 57.895 0.00 0.00 36.81 4.85
5624 5904 1.798223 GCACAATGTCACGTCTTGCTA 59.202 47.619 0.00 0.00 0.00 3.49
5643 5923 3.181495 GCTACAGTGCGTCAGTATCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
5646 5926 3.119673 ACAGTGCGTCAGTATCTCTTCAG 60.120 47.826 0.00 0.00 0.00 3.02
5672 5952 3.367678 GCAAAAAGCACTTGCCTGT 57.632 47.368 6.23 0.00 42.74 4.00
5692 5972 4.282496 TGTGTAATTCTGGGTTGGTTGTT 58.718 39.130 0.00 0.00 0.00 2.83
5734 6014 5.935945 TCACCTACTGAACAAAATCTTCCA 58.064 37.500 0.00 0.00 0.00 3.53
5779 6059 2.289945 GCTCCAGACACAAGTCCAATCT 60.290 50.000 0.00 0.00 46.15 2.40
5802 6082 5.475719 TCTAATGGACGTCGTTTCAGAAAT 58.524 37.500 9.92 0.00 0.00 2.17
5815 6095 8.381387 GTCGTTTCAGAAATAAGAATAGTGGTC 58.619 37.037 0.00 0.00 0.00 4.02
5866 6146 8.231304 GTTTTGAAACCATAATGTCAGACATG 57.769 34.615 17.11 6.25 34.43 3.21
5933 6214 5.164620 TGTTGCTCCATCAGATTCTACAA 57.835 39.130 0.00 0.00 0.00 2.41
5994 6275 8.571336 GCTTCTATACATATGATGGTGCTTTTT 58.429 33.333 10.38 0.00 33.60 1.94
6173 6454 2.918712 AGCTTCATAGGATCCCAACG 57.081 50.000 8.55 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.178301 TGCACCGTGGTGTTAGTTCA 59.822 50.000 19.56 5.87 46.90 3.18
2 3 1.263217 CTTGCACCGTGGTGTTAGTTC 59.737 52.381 19.56 3.33 46.90 3.01
3 4 1.305201 CTTGCACCGTGGTGTTAGTT 58.695 50.000 19.56 0.00 46.90 2.24
4 5 1.164041 GCTTGCACCGTGGTGTTAGT 61.164 55.000 19.56 0.00 46.90 2.24
6 7 2.248135 CGCTTGCACCGTGGTGTTA 61.248 57.895 19.56 7.37 46.90 2.41
7 8 3.582120 CGCTTGCACCGTGGTGTT 61.582 61.111 19.56 0.00 46.90 3.32
10 11 4.555709 TTCCGCTTGCACCGTGGT 62.556 61.111 12.94 0.00 33.79 4.16
11 12 3.283684 TTTCCGCTTGCACCGTGG 61.284 61.111 8.18 8.18 0.00 4.94
12 13 2.051345 GTTTCCGCTTGCACCGTG 60.051 61.111 5.37 0.00 0.00 4.94
13 14 2.515057 TGTTTCCGCTTGCACCGT 60.515 55.556 5.37 0.00 0.00 4.83
14 15 2.250939 TCTGTTTCCGCTTGCACCG 61.251 57.895 0.00 0.00 0.00 4.94
15 16 1.282875 GTCTGTTTCCGCTTGCACC 59.717 57.895 0.00 0.00 0.00 5.01
16 17 0.593128 ATGTCTGTTTCCGCTTGCAC 59.407 50.000 0.00 0.00 0.00 4.57
17 18 2.177394 TATGTCTGTTTCCGCTTGCA 57.823 45.000 0.00 0.00 0.00 4.08
18 19 2.223340 CCATATGTCTGTTTCCGCTTGC 60.223 50.000 1.24 0.00 0.00 4.01
19 20 2.355756 CCCATATGTCTGTTTCCGCTTG 59.644 50.000 1.24 0.00 0.00 4.01
20 21 2.238646 TCCCATATGTCTGTTTCCGCTT 59.761 45.455 1.24 0.00 0.00 4.68
21 22 1.837439 TCCCATATGTCTGTTTCCGCT 59.163 47.619 1.24 0.00 0.00 5.52
22 23 2.325583 TCCCATATGTCTGTTTCCGC 57.674 50.000 1.24 0.00 0.00 5.54
23 24 4.071961 TCATCCCATATGTCTGTTTCCG 57.928 45.455 1.24 0.00 0.00 4.30
24 25 4.217118 GCATCATCCCATATGTCTGTTTCC 59.783 45.833 1.24 0.00 0.00 3.13
25 26 5.068636 AGCATCATCCCATATGTCTGTTTC 58.931 41.667 1.24 0.00 0.00 2.78
26 27 5.057843 AGCATCATCCCATATGTCTGTTT 57.942 39.130 1.24 0.00 0.00 2.83
27 28 4.719026 AGCATCATCCCATATGTCTGTT 57.281 40.909 1.24 0.00 0.00 3.16
28 29 4.103627 TCAAGCATCATCCCATATGTCTGT 59.896 41.667 1.24 0.00 0.00 3.41
29 30 4.648651 TCAAGCATCATCCCATATGTCTG 58.351 43.478 1.24 0.00 0.00 3.51
30 31 4.987963 TCAAGCATCATCCCATATGTCT 57.012 40.909 1.24 0.00 0.00 3.41
31 32 6.647229 TCTATCAAGCATCATCCCATATGTC 58.353 40.000 1.24 0.00 0.00 3.06
32 33 6.631763 TCTATCAAGCATCATCCCATATGT 57.368 37.500 1.24 0.00 0.00 2.29
33 34 9.623000 TTAATCTATCAAGCATCATCCCATATG 57.377 33.333 0.00 0.00 0.00 1.78
34 35 9.624373 GTTAATCTATCAAGCATCATCCCATAT 57.376 33.333 0.00 0.00 0.00 1.78
35 36 8.605065 TGTTAATCTATCAAGCATCATCCCATA 58.395 33.333 0.00 0.00 0.00 2.74
36 37 7.464273 TGTTAATCTATCAAGCATCATCCCAT 58.536 34.615 0.00 0.00 0.00 4.00
37 38 6.840527 TGTTAATCTATCAAGCATCATCCCA 58.159 36.000 0.00 0.00 0.00 4.37
38 39 7.750229 TTGTTAATCTATCAAGCATCATCCC 57.250 36.000 0.00 0.00 0.00 3.85
57 58 9.243105 CCATTCTTCCTCCTTTAGATTTTGTTA 57.757 33.333 0.00 0.00 0.00 2.41
58 59 7.950124 TCCATTCTTCCTCCTTTAGATTTTGTT 59.050 33.333 0.00 0.00 0.00 2.83
59 60 7.470192 TCCATTCTTCCTCCTTTAGATTTTGT 58.530 34.615 0.00 0.00 0.00 2.83
60 61 7.831193 TCTCCATTCTTCCTCCTTTAGATTTTG 59.169 37.037 0.00 0.00 0.00 2.44
61 62 7.933223 TCTCCATTCTTCCTCCTTTAGATTTT 58.067 34.615 0.00 0.00 0.00 1.82
62 63 7.516450 TCTCCATTCTTCCTCCTTTAGATTT 57.484 36.000 0.00 0.00 0.00 2.17
63 64 7.202176 GGATCTCCATTCTTCCTCCTTTAGATT 60.202 40.741 0.00 0.00 35.64 2.40
64 65 6.272090 GGATCTCCATTCTTCCTCCTTTAGAT 59.728 42.308 0.00 0.00 35.64 1.98
65 66 5.604650 GGATCTCCATTCTTCCTCCTTTAGA 59.395 44.000 0.00 0.00 35.64 2.10
66 67 5.367937 TGGATCTCCATTCTTCCTCCTTTAG 59.632 44.000 0.00 0.00 42.01 1.85
67 68 5.288687 TGGATCTCCATTCTTCCTCCTTTA 58.711 41.667 0.00 0.00 42.01 1.85
68 69 4.114597 TGGATCTCCATTCTTCCTCCTTT 58.885 43.478 0.00 0.00 42.01 3.11
69 70 3.740780 TGGATCTCCATTCTTCCTCCTT 58.259 45.455 0.00 0.00 42.01 3.36
70 71 3.428063 TGGATCTCCATTCTTCCTCCT 57.572 47.619 0.00 0.00 42.01 3.69
82 83 2.305009 CCTGCCTCAAAATGGATCTCC 58.695 52.381 0.00 0.00 0.00 3.71
83 84 3.010200 ACCTGCCTCAAAATGGATCTC 57.990 47.619 0.00 0.00 0.00 2.75
84 85 3.463048 AACCTGCCTCAAAATGGATCT 57.537 42.857 0.00 0.00 0.00 2.75
85 86 5.659440 TTAAACCTGCCTCAAAATGGATC 57.341 39.130 0.00 0.00 0.00 3.36
86 87 6.432403 TTTTAAACCTGCCTCAAAATGGAT 57.568 33.333 0.00 0.00 0.00 3.41
87 88 5.878406 TTTTAAACCTGCCTCAAAATGGA 57.122 34.783 0.00 0.00 0.00 3.41
88 89 5.469760 CCTTTTTAAACCTGCCTCAAAATGG 59.530 40.000 0.00 0.00 31.33 3.16
89 90 5.049474 GCCTTTTTAAACCTGCCTCAAAATG 60.049 40.000 0.00 0.00 0.00 2.32
90 91 5.063204 GCCTTTTTAAACCTGCCTCAAAAT 58.937 37.500 0.00 0.00 0.00 1.82
91 92 4.447290 GCCTTTTTAAACCTGCCTCAAAA 58.553 39.130 0.00 0.00 0.00 2.44
92 93 3.181459 GGCCTTTTTAAACCTGCCTCAAA 60.181 43.478 11.82 0.00 35.99 2.69
93 94 2.367241 GGCCTTTTTAAACCTGCCTCAA 59.633 45.455 11.82 0.00 35.99 3.02
94 95 1.967779 GGCCTTTTTAAACCTGCCTCA 59.032 47.619 11.82 0.00 35.99 3.86
95 96 1.967779 TGGCCTTTTTAAACCTGCCTC 59.032 47.619 17.30 0.00 39.60 4.70
96 97 1.691976 GTGGCCTTTTTAAACCTGCCT 59.308 47.619 17.30 0.00 39.60 4.75
97 98 1.604438 CGTGGCCTTTTTAAACCTGCC 60.604 52.381 3.32 12.08 39.33 4.85
98 99 1.067974 ACGTGGCCTTTTTAAACCTGC 59.932 47.619 3.32 0.00 0.00 4.85
99 100 2.359531 TCACGTGGCCTTTTTAAACCTG 59.640 45.455 17.00 0.00 0.00 4.00
100 101 2.657143 TCACGTGGCCTTTTTAAACCT 58.343 42.857 17.00 0.00 0.00 3.50
101 102 3.313690 CATCACGTGGCCTTTTTAAACC 58.686 45.455 17.00 0.00 0.00 3.27
102 103 2.729360 GCATCACGTGGCCTTTTTAAAC 59.271 45.455 17.00 0.00 0.00 2.01
103 104 2.625790 AGCATCACGTGGCCTTTTTAAA 59.374 40.909 17.00 0.00 0.00 1.52
104 105 2.235016 AGCATCACGTGGCCTTTTTAA 58.765 42.857 17.00 0.00 0.00 1.52
105 106 1.904287 AGCATCACGTGGCCTTTTTA 58.096 45.000 17.00 0.00 0.00 1.52
106 107 1.539827 GTAGCATCACGTGGCCTTTTT 59.460 47.619 17.00 0.00 0.00 1.94
107 108 1.165270 GTAGCATCACGTGGCCTTTT 58.835 50.000 17.00 0.00 0.00 2.27
108 109 0.036164 TGTAGCATCACGTGGCCTTT 59.964 50.000 17.00 0.00 0.00 3.11
109 110 0.391661 CTGTAGCATCACGTGGCCTT 60.392 55.000 17.00 2.29 0.00 4.35
110 111 1.219124 CTGTAGCATCACGTGGCCT 59.781 57.895 17.00 11.71 0.00 5.19
111 112 0.807667 CTCTGTAGCATCACGTGGCC 60.808 60.000 17.00 0.00 0.00 5.36
112 113 0.108615 ACTCTGTAGCATCACGTGGC 60.109 55.000 17.00 12.35 0.00 5.01
113 114 1.202348 TGACTCTGTAGCATCACGTGG 59.798 52.381 17.00 0.92 0.00 4.94
114 115 2.524034 CTGACTCTGTAGCATCACGTG 58.476 52.381 9.94 9.94 0.00 4.49
115 116 1.135257 GCTGACTCTGTAGCATCACGT 60.135 52.381 0.00 0.00 39.67 4.49
116 117 1.554392 GCTGACTCTGTAGCATCACG 58.446 55.000 0.00 0.00 39.67 4.35
117 118 1.205655 TGGCTGACTCTGTAGCATCAC 59.794 52.381 0.00 0.00 41.63 3.06
118 119 1.560505 TGGCTGACTCTGTAGCATCA 58.439 50.000 0.00 0.00 41.63 3.07
119 120 2.093764 ACTTGGCTGACTCTGTAGCATC 60.094 50.000 0.00 0.00 41.63 3.91
120 121 1.905215 ACTTGGCTGACTCTGTAGCAT 59.095 47.619 0.00 0.00 41.63 3.79
121 122 1.342074 ACTTGGCTGACTCTGTAGCA 58.658 50.000 0.00 0.00 41.63 3.49
122 123 2.464157 AACTTGGCTGACTCTGTAGC 57.536 50.000 0.00 0.00 39.17 3.58
123 124 4.792521 ACTAACTTGGCTGACTCTGTAG 57.207 45.455 0.00 0.00 0.00 2.74
124 125 5.949952 TGATACTAACTTGGCTGACTCTGTA 59.050 40.000 0.00 0.00 0.00 2.74
125 126 4.772624 TGATACTAACTTGGCTGACTCTGT 59.227 41.667 0.00 0.00 0.00 3.41
126 127 5.330455 TGATACTAACTTGGCTGACTCTG 57.670 43.478 0.00 0.00 0.00 3.35
127 128 6.360370 TTTGATACTAACTTGGCTGACTCT 57.640 37.500 0.00 0.00 0.00 3.24
128 129 5.582665 CCTTTGATACTAACTTGGCTGACTC 59.417 44.000 0.00 0.00 0.00 3.36
129 130 5.491982 CCTTTGATACTAACTTGGCTGACT 58.508 41.667 0.00 0.00 0.00 3.41
130 131 4.095036 GCCTTTGATACTAACTTGGCTGAC 59.905 45.833 0.00 0.00 36.52 3.51
131 132 4.261801 GCCTTTGATACTAACTTGGCTGA 58.738 43.478 0.00 0.00 36.52 4.26
132 133 4.009675 TGCCTTTGATACTAACTTGGCTG 58.990 43.478 0.00 0.00 39.77 4.85
133 134 4.263506 ACTGCCTTTGATACTAACTTGGCT 60.264 41.667 0.00 0.00 39.77 4.75
134 135 4.010349 ACTGCCTTTGATACTAACTTGGC 58.990 43.478 0.00 0.00 39.53 4.52
135 136 4.330074 CGACTGCCTTTGATACTAACTTGG 59.670 45.833 0.00 0.00 0.00 3.61
136 137 4.929808 ACGACTGCCTTTGATACTAACTTG 59.070 41.667 0.00 0.00 0.00 3.16
137 138 5.148651 ACGACTGCCTTTGATACTAACTT 57.851 39.130 0.00 0.00 0.00 2.66
138 139 4.803098 ACGACTGCCTTTGATACTAACT 57.197 40.909 0.00 0.00 0.00 2.24
139 140 5.290400 GGTAACGACTGCCTTTGATACTAAC 59.710 44.000 0.00 0.00 0.00 2.34
140 141 5.413499 GGTAACGACTGCCTTTGATACTAA 58.587 41.667 0.00 0.00 0.00 2.24
141 142 5.002464 GGTAACGACTGCCTTTGATACTA 57.998 43.478 0.00 0.00 0.00 1.82
142 143 3.858247 GGTAACGACTGCCTTTGATACT 58.142 45.455 0.00 0.00 0.00 2.12
158 159 2.414138 GTGCATGACACCTAACGGTAAC 59.586 50.000 0.00 0.00 43.24 2.50
159 160 2.690786 GTGCATGACACCTAACGGTAA 58.309 47.619 0.00 0.00 43.24 2.85
160 161 2.373540 GTGCATGACACCTAACGGTA 57.626 50.000 0.00 0.00 43.24 4.02
170 171 2.195727 TGGGAGGATAAGTGCATGACA 58.804 47.619 0.00 0.00 0.00 3.58
171 172 2.945668 GTTGGGAGGATAAGTGCATGAC 59.054 50.000 0.00 0.00 0.00 3.06
172 173 2.419990 CGTTGGGAGGATAAGTGCATGA 60.420 50.000 0.00 0.00 0.00 3.07
173 174 1.942657 CGTTGGGAGGATAAGTGCATG 59.057 52.381 0.00 0.00 0.00 4.06
174 175 1.559682 ACGTTGGGAGGATAAGTGCAT 59.440 47.619 0.00 0.00 0.00 3.96
175 176 0.981183 ACGTTGGGAGGATAAGTGCA 59.019 50.000 0.00 0.00 0.00 4.57
176 177 1.369625 CACGTTGGGAGGATAAGTGC 58.630 55.000 0.00 0.00 0.00 4.40
177 178 2.012051 GCCACGTTGGGAGGATAAGTG 61.012 57.143 0.00 0.00 38.19 3.16
178 179 0.252197 GCCACGTTGGGAGGATAAGT 59.748 55.000 0.00 0.00 38.19 2.24
179 180 0.251916 TGCCACGTTGGGAGGATAAG 59.748 55.000 0.00 0.00 38.19 1.73
180 181 0.035820 GTGCCACGTTGGGAGGATAA 60.036 55.000 0.00 0.00 39.03 1.75
181 182 0.907704 AGTGCCACGTTGGGAGGATA 60.908 55.000 0.00 0.00 39.03 2.59
182 183 0.907704 TAGTGCCACGTTGGGAGGAT 60.908 55.000 0.00 0.00 39.03 3.24
183 184 1.534476 TAGTGCCACGTTGGGAGGA 60.534 57.895 0.00 0.00 39.03 3.71
184 185 1.375523 GTAGTGCCACGTTGGGAGG 60.376 63.158 0.00 0.00 39.03 4.30
185 186 0.949105 GTGTAGTGCCACGTTGGGAG 60.949 60.000 0.00 0.00 39.03 4.30
186 187 1.070105 GTGTAGTGCCACGTTGGGA 59.930 57.895 0.00 0.00 38.19 4.37
187 188 1.964373 GGTGTAGTGCCACGTTGGG 60.964 63.158 6.23 0.00 38.19 4.12
188 189 1.227704 TGGTGTAGTGCCACGTTGG 60.228 57.895 0.00 0.00 41.55 3.77
189 190 1.938861 GTGGTGTAGTGCCACGTTG 59.061 57.895 0.00 0.00 45.57 4.10
190 191 4.449391 GTGGTGTAGTGCCACGTT 57.551 55.556 0.00 0.00 45.57 3.99
194 195 0.544223 AGTGTTGTGGTGTAGTGCCA 59.456 50.000 0.00 0.00 0.00 4.92
195 196 1.675552 AAGTGTTGTGGTGTAGTGCC 58.324 50.000 0.00 0.00 0.00 5.01
196 197 5.212194 CAATTAAGTGTTGTGGTGTAGTGC 58.788 41.667 0.00 0.00 0.00 4.40
197 198 5.278266 CCCAATTAAGTGTTGTGGTGTAGTG 60.278 44.000 1.80 0.00 0.00 2.74
198 199 4.825085 CCCAATTAAGTGTTGTGGTGTAGT 59.175 41.667 1.80 0.00 0.00 2.73
199 200 4.217550 CCCCAATTAAGTGTTGTGGTGTAG 59.782 45.833 1.80 0.00 0.00 2.74
200 201 4.145807 CCCCAATTAAGTGTTGTGGTGTA 58.854 43.478 1.80 0.00 0.00 2.90
201 202 2.962421 CCCCAATTAAGTGTTGTGGTGT 59.038 45.455 1.80 0.00 0.00 4.16
202 203 2.298729 CCCCCAATTAAGTGTTGTGGTG 59.701 50.000 1.80 0.00 0.00 4.17
203 204 2.604139 CCCCCAATTAAGTGTTGTGGT 58.396 47.619 1.80 0.00 0.00 4.16
204 205 1.275010 GCCCCCAATTAAGTGTTGTGG 59.725 52.381 1.80 0.00 0.00 4.17
205 206 1.967066 TGCCCCCAATTAAGTGTTGTG 59.033 47.619 1.80 0.00 0.00 3.33
206 207 2.390225 TGCCCCCAATTAAGTGTTGT 57.610 45.000 1.80 0.00 0.00 3.32
207 208 3.979101 ATTGCCCCCAATTAAGTGTTG 57.021 42.857 1.80 0.00 38.49 3.33
223 224 1.401905 CTTCTCCCGGCAGTTAATTGC 59.598 52.381 14.14 14.14 43.34 3.56
224 225 2.711542 ACTTCTCCCGGCAGTTAATTG 58.288 47.619 0.00 0.00 0.00 2.32
225 226 4.080526 ACATACTTCTCCCGGCAGTTAATT 60.081 41.667 0.00 0.00 0.00 1.40
226 227 3.454812 ACATACTTCTCCCGGCAGTTAAT 59.545 43.478 0.00 0.00 0.00 1.40
227 228 2.835764 ACATACTTCTCCCGGCAGTTAA 59.164 45.455 0.00 0.00 0.00 2.01
228 229 2.167693 CACATACTTCTCCCGGCAGTTA 59.832 50.000 0.00 0.00 0.00 2.24
229 230 1.066143 CACATACTTCTCCCGGCAGTT 60.066 52.381 0.00 0.00 0.00 3.16
230 231 0.537188 CACATACTTCTCCCGGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
231 232 0.824109 TCACATACTTCTCCCGGCAG 59.176 55.000 0.00 0.00 0.00 4.85
232 233 1.271856 TTCACATACTTCTCCCGGCA 58.728 50.000 0.00 0.00 0.00 5.69
233 234 2.622064 ATTCACATACTTCTCCCGGC 57.378 50.000 0.00 0.00 0.00 6.13
234 235 4.503296 CCCTTATTCACATACTTCTCCCGG 60.503 50.000 0.00 0.00 0.00 5.73
235 236 4.632153 CCCTTATTCACATACTTCTCCCG 58.368 47.826 0.00 0.00 0.00 5.14
236 237 4.141482 TGCCCTTATTCACATACTTCTCCC 60.141 45.833 0.00 0.00 0.00 4.30
237 238 5.036117 TGCCCTTATTCACATACTTCTCC 57.964 43.478 0.00 0.00 0.00 3.71
238 239 7.283127 TCATTTGCCCTTATTCACATACTTCTC 59.717 37.037 0.00 0.00 0.00 2.87
239 240 7.118723 TCATTTGCCCTTATTCACATACTTCT 58.881 34.615 0.00 0.00 0.00 2.85
240 241 7.333528 TCATTTGCCCTTATTCACATACTTC 57.666 36.000 0.00 0.00 0.00 3.01
241 242 7.560991 TGATCATTTGCCCTTATTCACATACTT 59.439 33.333 0.00 0.00 0.00 2.24
242 243 7.062322 TGATCATTTGCCCTTATTCACATACT 58.938 34.615 0.00 0.00 0.00 2.12
243 244 7.275888 TGATCATTTGCCCTTATTCACATAC 57.724 36.000 0.00 0.00 0.00 2.39
244 245 6.016024 GCTGATCATTTGCCCTTATTCACATA 60.016 38.462 0.00 0.00 0.00 2.29
245 246 5.221382 GCTGATCATTTGCCCTTATTCACAT 60.221 40.000 0.00 0.00 0.00 3.21
246 247 4.098349 GCTGATCATTTGCCCTTATTCACA 59.902 41.667 0.00 0.00 0.00 3.58
247 248 4.500375 GGCTGATCATTTGCCCTTATTCAC 60.500 45.833 12.39 0.00 40.71 3.18
248 249 3.638160 GGCTGATCATTTGCCCTTATTCA 59.362 43.478 12.39 0.00 40.71 2.57
249 250 3.304928 CGGCTGATCATTTGCCCTTATTC 60.305 47.826 16.50 0.00 43.42 1.75
250 251 2.624838 CGGCTGATCATTTGCCCTTATT 59.375 45.455 16.50 0.00 43.42 1.40
251 252 2.233271 CGGCTGATCATTTGCCCTTAT 58.767 47.619 16.50 0.00 43.42 1.73
252 253 1.679139 CGGCTGATCATTTGCCCTTA 58.321 50.000 16.50 0.00 43.42 2.69
253 254 1.039233 CCGGCTGATCATTTGCCCTT 61.039 55.000 16.50 0.00 43.42 3.95
254 255 1.454479 CCGGCTGATCATTTGCCCT 60.454 57.895 16.50 0.00 43.42 5.19
255 256 2.492773 CCCGGCTGATCATTTGCCC 61.493 63.158 16.50 3.41 43.42 5.36
256 257 1.037030 TTCCCGGCTGATCATTTGCC 61.037 55.000 13.22 13.22 42.94 4.52
257 258 0.817013 TTTCCCGGCTGATCATTTGC 59.183 50.000 0.00 0.00 0.00 3.68
258 259 2.094675 AGTTTCCCGGCTGATCATTTG 58.905 47.619 0.00 0.00 0.00 2.32
259 260 2.493278 CAAGTTTCCCGGCTGATCATTT 59.507 45.455 0.00 0.00 0.00 2.32
260 261 2.094675 CAAGTTTCCCGGCTGATCATT 58.905 47.619 0.00 0.00 0.00 2.57
261 262 1.004745 ACAAGTTTCCCGGCTGATCAT 59.995 47.619 0.00 0.00 0.00 2.45
262 263 0.400213 ACAAGTTTCCCGGCTGATCA 59.600 50.000 0.00 0.00 0.00 2.92
263 264 1.534729 AACAAGTTTCCCGGCTGATC 58.465 50.000 0.00 0.00 0.00 2.92
264 265 2.039879 AGTAACAAGTTTCCCGGCTGAT 59.960 45.455 0.00 0.00 0.00 2.90
265 266 1.418637 AGTAACAAGTTTCCCGGCTGA 59.581 47.619 0.00 0.00 0.00 4.26
266 267 1.535462 CAGTAACAAGTTTCCCGGCTG 59.465 52.381 0.00 0.00 0.00 4.85
267 268 1.892209 CAGTAACAAGTTTCCCGGCT 58.108 50.000 0.00 0.00 0.00 5.52
268 269 0.240145 GCAGTAACAAGTTTCCCGGC 59.760 55.000 0.00 0.00 0.00 6.13
269 270 0.879090 GGCAGTAACAAGTTTCCCGG 59.121 55.000 0.00 0.00 0.00 5.73
270 271 0.515564 CGGCAGTAACAAGTTTCCCG 59.484 55.000 0.00 0.00 0.00 5.14
271 272 0.879090 CCGGCAGTAACAAGTTTCCC 59.121 55.000 0.00 0.00 0.00 3.97
272 273 1.601166 ACCGGCAGTAACAAGTTTCC 58.399 50.000 0.00 0.00 0.00 3.13
273 274 3.656559 TCTACCGGCAGTAACAAGTTTC 58.343 45.455 0.00 0.00 0.00 2.78
274 275 3.756933 TCTACCGGCAGTAACAAGTTT 57.243 42.857 0.00 0.00 0.00 2.66
275 276 3.660865 CTTCTACCGGCAGTAACAAGTT 58.339 45.455 0.00 0.00 0.00 2.66
276 277 2.612221 GCTTCTACCGGCAGTAACAAGT 60.612 50.000 0.00 0.00 0.00 3.16
277 278 2.000447 GCTTCTACCGGCAGTAACAAG 59.000 52.381 0.00 0.00 0.00 3.16
278 279 1.345089 TGCTTCTACCGGCAGTAACAA 59.655 47.619 0.00 0.00 34.22 2.83
279 280 0.970640 TGCTTCTACCGGCAGTAACA 59.029 50.000 0.00 0.00 34.22 2.41
280 281 1.067071 AGTGCTTCTACCGGCAGTAAC 60.067 52.381 0.00 0.00 39.89 2.50
281 282 1.263356 AGTGCTTCTACCGGCAGTAA 58.737 50.000 0.00 0.00 39.89 2.24
282 283 1.203994 GAAGTGCTTCTACCGGCAGTA 59.796 52.381 0.00 0.00 40.66 2.74
283 284 0.037232 GAAGTGCTTCTACCGGCAGT 60.037 55.000 0.00 0.00 42.96 4.40
284 285 0.037326 TGAAGTGCTTCTACCGGCAG 60.037 55.000 0.00 0.00 40.14 4.85
285 286 0.037326 CTGAAGTGCTTCTACCGGCA 60.037 55.000 0.00 0.00 40.14 5.69
286 287 0.741221 CCTGAAGTGCTTCTACCGGC 60.741 60.000 0.00 0.00 40.14 6.13
287 288 0.108138 CCCTGAAGTGCTTCTACCGG 60.108 60.000 0.00 0.00 40.14 5.28
288 289 0.741221 GCCCTGAAGTGCTTCTACCG 60.741 60.000 12.44 0.67 40.14 4.02
289 290 0.324943 TGCCCTGAAGTGCTTCTACC 59.675 55.000 12.44 1.16 40.14 3.18
290 291 1.276421 TCTGCCCTGAAGTGCTTCTAC 59.724 52.381 12.44 1.73 40.14 2.59
291 292 1.644509 TCTGCCCTGAAGTGCTTCTA 58.355 50.000 12.44 0.22 40.14 2.10
292 293 0.767375 TTCTGCCCTGAAGTGCTTCT 59.233 50.000 12.44 0.00 40.14 2.85
293 294 1.609208 TTTCTGCCCTGAAGTGCTTC 58.391 50.000 5.07 5.07 39.91 3.86
294 295 2.071778 TTTTCTGCCCTGAAGTGCTT 57.928 45.000 0.00 0.00 0.00 3.91
295 296 1.683385 GTTTTTCTGCCCTGAAGTGCT 59.317 47.619 0.00 0.00 0.00 4.40
296 297 1.683385 AGTTTTTCTGCCCTGAAGTGC 59.317 47.619 0.00 0.00 0.00 4.40
297 298 3.360249 CAGTTTTTCTGCCCTGAAGTG 57.640 47.619 0.00 0.00 37.36 3.16
307 308 3.744660 AGTCCTACTGGCAGTTTTTCTG 58.255 45.455 27.24 8.26 46.12 3.02
308 309 4.137543 CAAGTCCTACTGGCAGTTTTTCT 58.862 43.478 27.24 15.88 0.00 2.52
309 310 3.253432 CCAAGTCCTACTGGCAGTTTTTC 59.747 47.826 27.24 13.94 0.00 2.29
310 311 3.222603 CCAAGTCCTACTGGCAGTTTTT 58.777 45.455 27.24 10.26 0.00 1.94
311 312 2.863809 CCAAGTCCTACTGGCAGTTTT 58.136 47.619 27.24 9.92 0.00 2.43
312 313 1.545651 GCCAAGTCCTACTGGCAGTTT 60.546 52.381 27.24 10.74 40.07 2.66
313 314 0.036875 GCCAAGTCCTACTGGCAGTT 59.963 55.000 27.24 10.10 40.07 3.16
314 315 1.679898 GCCAAGTCCTACTGGCAGT 59.320 57.895 25.34 25.34 40.07 4.40
315 316 1.448540 CGCCAAGTCCTACTGGCAG 60.449 63.158 14.16 14.16 40.22 4.85
316 317 1.476845 TTCGCCAAGTCCTACTGGCA 61.477 55.000 13.14 0.00 40.22 4.92
317 318 0.107654 ATTCGCCAAGTCCTACTGGC 60.108 55.000 2.93 2.93 38.31 4.85
318 319 3.458189 CTTATTCGCCAAGTCCTACTGG 58.542 50.000 0.00 0.00 0.00 4.00
319 320 3.458189 CCTTATTCGCCAAGTCCTACTG 58.542 50.000 0.00 0.00 0.00 2.74
320 321 2.434702 CCCTTATTCGCCAAGTCCTACT 59.565 50.000 0.00 0.00 0.00 2.57
321 322 2.835027 CCCTTATTCGCCAAGTCCTAC 58.165 52.381 0.00 0.00 0.00 3.18
322 323 1.140252 GCCCTTATTCGCCAAGTCCTA 59.860 52.381 0.00 0.00 0.00 2.94
323 324 0.107165 GCCCTTATTCGCCAAGTCCT 60.107 55.000 0.00 0.00 0.00 3.85
324 325 0.393808 TGCCCTTATTCGCCAAGTCC 60.394 55.000 0.00 0.00 0.00 3.85
325 326 1.680338 ATGCCCTTATTCGCCAAGTC 58.320 50.000 0.00 0.00 0.00 3.01
326 327 2.438021 TCTATGCCCTTATTCGCCAAGT 59.562 45.455 0.00 0.00 0.00 3.16
327 328 3.126001 TCTATGCCCTTATTCGCCAAG 57.874 47.619 0.00 0.00 0.00 3.61
328 329 3.569194 TTCTATGCCCTTATTCGCCAA 57.431 42.857 0.00 0.00 0.00 4.52
329 330 3.118038 AGTTTCTATGCCCTTATTCGCCA 60.118 43.478 0.00 0.00 0.00 5.69
330 331 3.251004 CAGTTTCTATGCCCTTATTCGCC 59.749 47.826 0.00 0.00 0.00 5.54
331 332 3.304057 GCAGTTTCTATGCCCTTATTCGC 60.304 47.826 0.00 0.00 37.73 4.70
332 333 4.474226 GCAGTTTCTATGCCCTTATTCG 57.526 45.455 0.00 0.00 37.73 3.34
341 342 0.740737 ATTGCCGGCAGTTTCTATGC 59.259 50.000 30.75 0.00 43.09 3.14
342 343 1.066002 CCATTGCCGGCAGTTTCTATG 59.934 52.381 30.75 26.55 0.00 2.23
343 344 1.340991 ACCATTGCCGGCAGTTTCTAT 60.341 47.619 30.75 16.62 0.00 1.98
344 345 0.037590 ACCATTGCCGGCAGTTTCTA 59.962 50.000 30.75 14.75 0.00 2.10
345 346 1.228552 ACCATTGCCGGCAGTTTCT 60.229 52.632 30.75 10.39 0.00 2.52
346 347 1.080569 CACCATTGCCGGCAGTTTC 60.081 57.895 30.75 0.00 0.00 2.78
347 348 1.805428 GACACCATTGCCGGCAGTTT 61.805 55.000 30.75 17.46 0.00 2.66
348 349 2.203480 ACACCATTGCCGGCAGTT 60.203 55.556 30.75 18.76 0.00 3.16
349 350 2.672996 GACACCATTGCCGGCAGT 60.673 61.111 30.75 25.57 0.00 4.40
350 351 3.443045 GGACACCATTGCCGGCAG 61.443 66.667 30.75 20.97 0.00 4.85
351 352 4.277009 TGGACACCATTGCCGGCA 62.277 61.111 29.03 29.03 0.00 5.69
352 353 3.747976 GTGGACACCATTGCCGGC 61.748 66.667 22.73 22.73 35.28 6.13
353 354 3.430862 CGTGGACACCATTGCCGG 61.431 66.667 0.00 0.00 35.28 6.13
354 355 2.258013 AACGTGGACACCATTGCCG 61.258 57.895 0.00 0.00 35.28 5.69
355 356 1.169661 TCAACGTGGACACCATTGCC 61.170 55.000 0.00 0.00 35.28 4.52
356 357 0.665835 TTCAACGTGGACACCATTGC 59.334 50.000 0.00 0.00 35.28 3.56
357 358 1.266718 CCTTCAACGTGGACACCATTG 59.733 52.381 0.00 7.44 35.28 2.82
358 359 1.604604 CCTTCAACGTGGACACCATT 58.395 50.000 0.00 0.00 35.28 3.16
359 360 0.250727 CCCTTCAACGTGGACACCAT 60.251 55.000 0.00 0.00 35.28 3.55
360 361 1.147376 CCCTTCAACGTGGACACCA 59.853 57.895 0.00 0.00 0.00 4.17
361 362 2.258726 GCCCTTCAACGTGGACACC 61.259 63.158 0.00 0.00 0.00 4.16
362 363 2.604174 CGCCCTTCAACGTGGACAC 61.604 63.158 0.00 0.00 0.00 3.67
363 364 2.280524 CGCCCTTCAACGTGGACA 60.281 61.111 0.00 0.00 0.00 4.02
364 365 3.723348 GCGCCCTTCAACGTGGAC 61.723 66.667 0.00 0.00 0.00 4.02
365 366 3.545124 ATGCGCCCTTCAACGTGGA 62.545 57.895 4.18 0.00 0.00 4.02
366 367 1.302383 TAATGCGCCCTTCAACGTGG 61.302 55.000 4.18 0.00 0.00 4.94
367 368 0.732571 ATAATGCGCCCTTCAACGTG 59.267 50.000 4.18 0.00 0.00 4.49
368 369 1.014352 GATAATGCGCCCTTCAACGT 58.986 50.000 4.18 0.00 0.00 3.99
369 370 1.003545 CAGATAATGCGCCCTTCAACG 60.004 52.381 4.18 0.00 0.00 4.10
370 371 1.268743 GCAGATAATGCGCCCTTCAAC 60.269 52.381 4.18 0.00 46.99 3.18
371 372 1.024271 GCAGATAATGCGCCCTTCAA 58.976 50.000 4.18 0.00 46.99 2.69
372 373 2.706636 GCAGATAATGCGCCCTTCA 58.293 52.632 4.18 0.00 46.99 3.02
381 382 2.332063 ACTTGTCCCGGCAGATAATG 57.668 50.000 0.00 0.00 0.00 1.90
382 383 4.196971 GTTTACTTGTCCCGGCAGATAAT 58.803 43.478 0.00 0.00 0.00 1.28
383 384 3.008157 TGTTTACTTGTCCCGGCAGATAA 59.992 43.478 0.00 0.00 0.00 1.75
384 385 2.568062 TGTTTACTTGTCCCGGCAGATA 59.432 45.455 0.00 0.00 0.00 1.98
385 386 1.349688 TGTTTACTTGTCCCGGCAGAT 59.650 47.619 0.00 0.00 0.00 2.90
386 387 0.759959 TGTTTACTTGTCCCGGCAGA 59.240 50.000 0.00 0.00 0.00 4.26
387 388 1.468520 CATGTTTACTTGTCCCGGCAG 59.531 52.381 0.00 0.00 0.00 4.85
388 389 1.529226 CATGTTTACTTGTCCCGGCA 58.471 50.000 0.00 0.00 0.00 5.69
389 390 0.808755 CCATGTTTACTTGTCCCGGC 59.191 55.000 0.00 0.00 0.00 6.13
390 391 0.808755 GCCATGTTTACTTGTCCCGG 59.191 55.000 0.00 0.00 0.00 5.73
391 392 0.808755 GGCCATGTTTACTTGTCCCG 59.191 55.000 0.00 0.00 0.00 5.14
403 404 2.900547 GGCAGTAAATGGGCCATGT 58.099 52.632 22.01 18.32 46.92 3.21
489 491 0.038166 TTCATCTCTGGCGGGCTTTT 59.962 50.000 2.38 0.00 0.00 2.27
504 506 3.186817 TCGTTCGGTGCGTAAATTTTCAT 59.813 39.130 0.00 0.00 0.00 2.57
514 516 1.289109 CCAATCTTCGTTCGGTGCGT 61.289 55.000 0.00 0.00 0.00 5.24
519 521 1.906994 TTGCGCCAATCTTCGTTCGG 61.907 55.000 4.18 0.00 0.00 4.30
521 523 0.796312 TCTTGCGCCAATCTTCGTTC 59.204 50.000 4.18 0.00 0.00 3.95
525 527 0.371645 CGAGTCTTGCGCCAATCTTC 59.628 55.000 4.18 0.00 0.00 2.87
534 536 1.982073 GATTTGGGCCGAGTCTTGCG 61.982 60.000 8.97 0.00 0.00 4.85
537 539 0.253327 GGAGATTTGGGCCGAGTCTT 59.747 55.000 18.92 4.38 0.00 3.01
545 547 0.253327 AGAGTTCGGGAGATTTGGGC 59.747 55.000 0.00 0.00 39.57 5.36
547 549 1.834263 AGGAGAGTTCGGGAGATTTGG 59.166 52.381 0.00 0.00 39.57 3.28
586 588 2.199117 GAGGGCACACATCGGACTA 58.801 57.895 0.00 0.00 0.00 2.59
689 691 3.181461 GGGGGTGAGAACATAGTCAGATG 60.181 52.174 0.00 0.00 0.00 2.90
702 704 4.020617 CGCTGCTTGGGGGTGAGA 62.021 66.667 0.00 0.00 0.00 3.27
722 724 2.360852 GTGAGAGGGGACGGACGA 60.361 66.667 0.00 0.00 0.00 4.20
753 756 2.103042 GTGACGCATGTGAGGAGGC 61.103 63.158 14.43 0.00 0.00 4.70
770 773 1.341531 CGAGAAGATAAGGGATGCGGT 59.658 52.381 0.00 0.00 0.00 5.68
776 779 1.745320 GCCGGCGAGAAGATAAGGGA 61.745 60.000 12.58 0.00 0.00 4.20
803 806 0.447801 CGATGTGGGGCGAAAGAAAG 59.552 55.000 0.00 0.00 0.00 2.62
832 835 3.386726 ACCAAAAAGCCACCTTTAACTCC 59.613 43.478 0.00 0.00 40.30 3.85
833 836 4.098807 TCACCAAAAAGCCACCTTTAACTC 59.901 41.667 0.00 0.00 40.30 3.01
842 845 2.294512 CTCCTCTTCACCAAAAAGCCAC 59.705 50.000 0.00 0.00 0.00 5.01
845 848 2.294512 CACCTCCTCTTCACCAAAAAGC 59.705 50.000 0.00 0.00 0.00 3.51
846 849 3.316308 CACACCTCCTCTTCACCAAAAAG 59.684 47.826 0.00 0.00 0.00 2.27
852 855 1.003233 GCCACACCTCCTCTTCACC 60.003 63.158 0.00 0.00 0.00 4.02
885 888 2.866028 CTGCACAGCTCCTTTCGC 59.134 61.111 0.00 0.00 0.00 4.70
897 900 0.462581 TCAGAATCATCCGGCTGCAC 60.463 55.000 0.00 0.00 0.00 4.57
919 922 1.523258 CCCGCTTCAGATCCAGCAG 60.523 63.158 9.23 0.00 35.60 4.24
939 942 2.102357 AGCTACACGGCGACATCG 59.898 61.111 16.62 0.00 43.27 3.84
942 945 2.986979 TCCAGCTACACGGCGACA 60.987 61.111 16.62 0.00 37.29 4.35
949 952 1.035932 TCCTACCGCTCCAGCTACAC 61.036 60.000 0.00 0.00 39.32 2.90
957 960 4.208686 CCACGCTCCTACCGCTCC 62.209 72.222 0.00 0.00 0.00 4.70
995 998 2.815211 TCGCTGTCGCCATCAAGC 60.815 61.111 0.00 0.00 35.26 4.01
1001 1004 4.273257 TGTTCGTCGCTGTCGCCA 62.273 61.111 0.00 0.00 35.26 5.69
1003 1006 4.104633 CGTGTTCGTCGCTGTCGC 62.105 66.667 0.00 0.00 35.26 5.19
1006 1009 2.050351 CCTCGTGTTCGTCGCTGT 60.050 61.111 0.00 0.00 38.33 4.40
1040 1043 1.142097 GCGCTCCTCCTTACAGGTC 59.858 63.158 0.00 0.00 36.53 3.85
1066 1069 0.249784 CACATCTCAGGCCCGATCTG 60.250 60.000 0.00 0.00 0.00 2.90
1069 1072 2.321263 CTGCACATCTCAGGCCCGAT 62.321 60.000 0.00 0.00 0.00 4.18
1077 1080 2.038837 GCTGCTGCTGCACATCTCA 61.039 57.895 23.99 0.00 45.31 3.27
1121 1124 2.676163 AAAGACGAGCCCACCACCAC 62.676 60.000 0.00 0.00 0.00 4.16
1156 1159 4.241999 GTCCATGATGCCGCGCAC 62.242 66.667 8.75 0.00 43.04 5.34
1165 1168 4.552365 CTGCCGGGCGTCCATGAT 62.552 66.667 15.40 0.00 0.00 2.45
1232 1235 2.029844 GTTGACGCAGCAGAGGACC 61.030 63.158 0.00 0.00 0.00 4.46
1251 1254 2.027745 ACAGACATCTCCACAATTCGCT 60.028 45.455 0.00 0.00 0.00 4.93
1263 1266 1.346062 ACCTGCAGACACAGACATCT 58.654 50.000 17.39 0.00 40.25 2.90
1359 1362 2.526432 ACTGTCCTCACGGTCAACTAT 58.474 47.619 0.00 0.00 37.62 2.12
1488 1491 8.491152 CAAATAACAACAACAACAACAAGTCAA 58.509 29.630 0.00 0.00 0.00 3.18
1489 1492 7.867909 TCAAATAACAACAACAACAACAAGTCA 59.132 29.630 0.00 0.00 0.00 3.41
1490 1493 8.233692 TCAAATAACAACAACAACAACAAGTC 57.766 30.769 0.00 0.00 0.00 3.01
1491 1494 8.491950 GTTCAAATAACAACAACAACAACAAGT 58.508 29.630 0.00 0.00 0.00 3.16
1492 1495 8.491152 TGTTCAAATAACAACAACAACAACAAG 58.509 29.630 0.00 0.00 29.43 3.16
1512 1515 2.158682 ACAGTACACCCAGCATGTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
1672 1680 7.349598 ACCATATTATCAGGCATTAGAATCCC 58.650 38.462 0.00 0.00 0.00 3.85
1751 1759 0.670546 CAGTTTGTCGGACGGCATCT 60.671 55.000 0.00 0.00 0.00 2.90
1788 1796 4.966787 TGCCCCGGAAACAGTGGC 62.967 66.667 0.73 5.72 42.49 5.01
1920 1930 2.489255 GGGGATGAGTAGTCGAGGATGA 60.489 54.545 0.00 0.00 0.00 2.92
1933 1943 2.814805 ATTTCACAGGTGGGGATGAG 57.185 50.000 0.00 0.00 0.00 2.90
2560 2574 9.058174 GTTAGTACTACTCTTGCATCATCTAGA 57.942 37.037 0.91 0.00 0.00 2.43
2616 2652 7.988737 TGGAGCATTATCTAGTTTGAAATGTG 58.011 34.615 0.00 0.00 31.65 3.21
2617 2653 8.757982 ATGGAGCATTATCTAGTTTGAAATGT 57.242 30.769 0.00 0.00 31.65 2.71
2636 2672 5.819901 AGCACTATCTAGTTTGAAATGGAGC 59.180 40.000 0.00 0.00 33.46 4.70
2775 2813 1.303074 ACAGAGGTGGTGCTGCATG 60.303 57.895 5.27 0.00 35.57 4.06
2796 2834 4.030216 TGGTAGCTACATCCAATGTGAGA 58.970 43.478 24.75 0.00 44.60 3.27
2884 2922 1.816224 AGTTGCAGTTGAAACACGGTT 59.184 42.857 5.81 0.00 36.01 4.44
2942 3078 5.067805 GGTGTAGAAATAAATTGGGAGCAGG 59.932 44.000 0.00 0.00 0.00 4.85
2960 3096 9.988815 ACATAGAAGCAGATTATTAAGGTGTAG 57.011 33.333 0.00 0.00 0.00 2.74
3000 3136 2.083774 TGCTTTTGCCAGACTTATCCG 58.916 47.619 0.00 0.00 46.87 4.18
3113 3249 8.891720 ACAAATCAAACAAACAAATAAGCACAT 58.108 25.926 0.00 0.00 0.00 3.21
3175 3368 8.510358 AGTTAAGGTAAAAGTTAACCCCTCTA 57.490 34.615 0.88 0.00 39.12 2.43
3716 3951 2.929398 GTGCTGAAACAACCAACCAAAG 59.071 45.455 0.00 0.00 0.00 2.77
3901 4166 5.125356 ACAGACATGACAGATCACAAAACA 58.875 37.500 0.00 0.00 37.79 2.83
4159 4428 1.376609 GCTGCCGGGGATTACTTGTG 61.377 60.000 2.18 0.00 0.00 3.33
4259 4528 5.666462 ACACTAATGCACCGACATGTAATA 58.334 37.500 0.00 0.00 0.00 0.98
4264 4533 2.483877 ACAACACTAATGCACCGACATG 59.516 45.455 0.00 0.00 0.00 3.21
4309 4578 2.309755 TGGGCATTGTCCTTCTCATTCT 59.690 45.455 9.08 0.00 0.00 2.40
4319 4588 1.000843 GAAGGTGTTTGGGCATTGTCC 59.999 52.381 0.00 0.00 0.00 4.02
4326 4595 0.673985 GTCAAGGAAGGTGTTTGGGC 59.326 55.000 0.00 0.00 0.00 5.36
4456 4730 4.641989 CCATCTTTCGGATCCAACTTGAAT 59.358 41.667 13.41 0.00 31.27 2.57
4479 4753 3.308530 GTGCATCCTTGTTTAGTTGCAC 58.691 45.455 9.71 9.71 46.07 4.57
4494 4768 5.152097 CAGACTGAAAAACATGAGTGCATC 58.848 41.667 0.00 0.00 30.68 3.91
4526 4800 7.181485 AGCTTTTCTAAGGTGGTACCAATACTA 59.819 37.037 18.31 5.20 41.95 1.82
4550 4824 0.038801 GCCTTGCCTTCAAAGTGAGC 60.039 55.000 0.00 0.00 0.00 4.26
4644 4919 3.375699 ACCCGATACTTTGGATCAGACT 58.624 45.455 0.00 0.00 0.00 3.24
4753 5028 2.943033 AGAACGGTTGGTCTTGTTCTTG 59.057 45.455 0.00 0.00 46.46 3.02
4809 5084 2.826428 CCTCGCAGTGTGCAATATAGT 58.174 47.619 0.00 0.00 45.36 2.12
4923 5200 5.188751 ACATTTGGTTCAGGTTCTTTTTGGA 59.811 36.000 0.00 0.00 0.00 3.53
4942 5219 8.526147 CAATCCTTGAAGATTTCCACTACATTT 58.474 33.333 0.00 0.00 34.19 2.32
4952 5229 4.488879 GTGTGGCAATCCTTGAAGATTTC 58.511 43.478 0.00 0.00 34.19 2.17
4997 5274 1.285023 CAGCTGCTTGAACTGGTGC 59.715 57.895 0.00 0.00 31.71 5.01
5011 5288 5.279556 GGAAGAGTAAGGACTTACAACAGCT 60.280 44.000 20.65 9.24 45.79 4.24
5032 5309 1.682854 CAAGCAGTTCAAAGGCAGGAA 59.317 47.619 0.00 0.00 0.00 3.36
5042 5320 2.863740 CGTCACAGTAACAAGCAGTTCA 59.136 45.455 0.00 0.00 41.64 3.18
5049 5327 5.403897 AATGAACACGTCACAGTAACAAG 57.596 39.130 0.00 0.00 39.72 3.16
5053 5331 6.853872 GCAATTAAATGAACACGTCACAGTAA 59.146 34.615 0.00 0.00 39.72 2.24
5062 5340 6.354080 CAAACCAAGCAATTAAATGAACACG 58.646 36.000 0.00 0.00 0.00 4.49
5075 5353 1.903294 TTGGCTGCAAACCAAGCAA 59.097 47.368 15.18 0.00 42.23 3.91
5146 5424 9.231297 CCTTCATCTCTTTTAAACCATGTAAGA 57.769 33.333 0.00 0.00 0.00 2.10
5219 5497 4.955450 AGCTATTGTATCATTTTGTGGGCA 59.045 37.500 0.00 0.00 0.00 5.36
5327 5605 4.747540 TTTCCTCACATTCGTTGACATG 57.252 40.909 0.00 0.00 0.00 3.21
5469 5748 8.311109 AGACAAAAACAAACAAAGTAGGTTCAT 58.689 29.630 0.00 0.00 0.00 2.57
5532 5812 4.085357 TCCAGAGCTTGCTGAAAGTTTA 57.915 40.909 0.00 0.00 38.14 2.01
5549 5829 7.819644 TGTGTCTATTGAATCATTTGTTCCAG 58.180 34.615 0.00 0.00 0.00 3.86
5564 5844 3.753272 CCTTCAGGTGGTTGTGTCTATTG 59.247 47.826 0.00 0.00 0.00 1.90
5600 5880 0.588252 AGACGTGACATTGTGCTTGC 59.412 50.000 0.00 0.00 0.00 4.01
5603 5883 0.588252 GCAAGACGTGACATTGTGCT 59.412 50.000 0.00 0.00 0.00 4.40
5624 5904 2.820197 TGAAGAGATACTGACGCACTGT 59.180 45.455 0.00 0.00 35.06 3.55
5665 5945 2.890311 CAACCCAGAATTACACAGGCAA 59.110 45.455 0.00 0.00 0.00 4.52
5667 5947 1.818674 CCAACCCAGAATTACACAGGC 59.181 52.381 0.00 0.00 0.00 4.85
5672 5952 5.536916 CCTTAACAACCAACCCAGAATTACA 59.463 40.000 0.00 0.00 0.00 2.41
5692 5972 4.322953 GGTGATTTGGACGAGGTTACCTTA 60.323 45.833 4.99 0.00 31.76 2.69
5779 6059 4.508461 TTCTGAAACGACGTCCATTAGA 57.492 40.909 10.58 5.23 0.00 2.10
5853 6133 5.706833 ACAATGAAGCACATGTCTGACATTA 59.293 36.000 20.13 0.00 36.53 1.90
5855 6135 4.077108 ACAATGAAGCACATGTCTGACAT 58.923 39.130 17.24 17.24 39.91 3.06
5857 6137 4.023792 TGAACAATGAAGCACATGTCTGAC 60.024 41.667 0.00 0.00 39.39 3.51
5866 6146 3.631145 TGCTCTTGAACAATGAAGCAC 57.369 42.857 12.12 0.00 0.00 4.40
5895 6176 3.766051 AGCAACATGATCTTCCCCTTTTC 59.234 43.478 0.00 0.00 0.00 2.29
5933 6214 3.679389 CCTGAGTGCTAATGTTTCAGGT 58.321 45.455 10.00 0.00 46.24 4.00
5980 6261 5.394883 CCTTGCAGATAAAAAGCACCATCAT 60.395 40.000 0.00 0.00 38.11 2.45
5994 6275 7.065803 GCATAAAGTTTACAGTCCTTGCAGATA 59.934 37.037 9.26 0.00 0.00 1.98
6096 6377 9.910511 CACTATACAAAAATAGCGTCGTAATTT 57.089 29.630 0.00 0.00 33.49 1.82
6166 6447 0.466372 TGAATGTTGGCACGTTGGGA 60.466 50.000 0.00 0.00 31.82 4.37
6173 6454 1.139520 GCCCGATGAATGTTGGCAC 59.860 57.895 0.00 0.00 41.76 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.