Multiple sequence alignment - TraesCS2A01G285300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G285300 chr2A 100.000 3783 0 0 1 3783 480647863 480651645 0.000000e+00 6986.0
1 TraesCS2A01G285300 chr2D 94.612 3211 120 22 40 3213 358133826 358137020 0.000000e+00 4922.0
2 TraesCS2A01G285300 chr2D 77.948 653 100 23 3151 3783 495748456 495747828 5.970000e-98 368.0
3 TraesCS2A01G285300 chr2D 88.554 166 19 0 3618 3783 358137275 358137440 6.410000e-48 202.0
4 TraesCS2A01G285300 chr2B 94.168 3172 118 25 40 3177 425794013 425797151 0.000000e+00 4771.0
5 TraesCS2A01G285300 chr2B 97.436 39 1 0 1 39 425793946 425793984 2.440000e-07 67.6
6 TraesCS2A01G285300 chr4D 81.703 634 96 14 3160 3783 464534004 464534627 9.370000e-141 510.0
7 TraesCS2A01G285300 chr4D 79.753 647 86 26 3164 3783 464249286 464248658 9.710000e-116 427.0
8 TraesCS2A01G285300 chr3D 83.178 535 78 6 3254 3783 136410118 136410645 2.640000e-131 479.0
9 TraesCS2A01G285300 chr7B 79.936 628 98 11 3180 3783 589759866 589760489 1.610000e-118 436.0
10 TraesCS2A01G285300 chr7A 79.745 627 97 16 3164 3783 594428506 594429109 9.710000e-116 427.0
11 TraesCS2A01G285300 chr7D 81.181 542 85 12 3246 3783 461954188 461954716 1.620000e-113 420.0
12 TraesCS2A01G285300 chr5A 80.068 587 98 11 3208 3783 602305856 602305278 5.840000e-113 418.0
13 TraesCS2A01G285300 chrUn 83.108 444 63 10 3169 3608 384591449 384591014 9.850000e-106 394.0
14 TraesCS2A01G285300 chr6D 82.018 456 64 10 3163 3608 293497982 293498429 4.610000e-99 372.0
15 TraesCS2A01G285300 chr1D 77.439 492 68 26 3332 3783 481461897 481461409 1.740000e-63 254.0
16 TraesCS2A01G285300 chr6B 90.667 75 7 0 2212 2286 471630240 471630314 2.400000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G285300 chr2A 480647863 480651645 3782 False 6986.0 6986 100.000 1 3783 1 chr2A.!!$F1 3782
1 TraesCS2A01G285300 chr2D 358133826 358137440 3614 False 2562.0 4922 91.583 40 3783 2 chr2D.!!$F1 3743
2 TraesCS2A01G285300 chr2D 495747828 495748456 628 True 368.0 368 77.948 3151 3783 1 chr2D.!!$R1 632
3 TraesCS2A01G285300 chr2B 425793946 425797151 3205 False 2419.3 4771 95.802 1 3177 2 chr2B.!!$F1 3176
4 TraesCS2A01G285300 chr4D 464534004 464534627 623 False 510.0 510 81.703 3160 3783 1 chr4D.!!$F1 623
5 TraesCS2A01G285300 chr4D 464248658 464249286 628 True 427.0 427 79.753 3164 3783 1 chr4D.!!$R1 619
6 TraesCS2A01G285300 chr3D 136410118 136410645 527 False 479.0 479 83.178 3254 3783 1 chr3D.!!$F1 529
7 TraesCS2A01G285300 chr7B 589759866 589760489 623 False 436.0 436 79.936 3180 3783 1 chr7B.!!$F1 603
8 TraesCS2A01G285300 chr7A 594428506 594429109 603 False 427.0 427 79.745 3164 3783 1 chr7A.!!$F1 619
9 TraesCS2A01G285300 chr7D 461954188 461954716 528 False 420.0 420 81.181 3246 3783 1 chr7D.!!$F1 537
10 TraesCS2A01G285300 chr5A 602305278 602305856 578 True 418.0 418 80.068 3208 3783 1 chr5A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 784 0.665068 TCCGTTTCACGTCCGACATG 60.665 55.0 0.00 0.0 40.58 3.21 F
1599 1661 0.238289 CCGCAGTGTTCAATGTCACC 59.762 55.0 2.44 0.0 35.45 4.02 F
1685 1747 1.256812 AAGAAATTTGGTGCCCGGAG 58.743 50.0 0.73 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1813 0.465705 TAGCAATCCTCGGCTTCCAG 59.534 55.000 0.00 0.0 41.41 3.86 R
2584 2652 1.059584 TCTTGGCTTCCACTGGGTGA 61.060 55.000 0.00 0.0 35.23 4.02 R
3239 3309 1.064946 CAAAAAGCGAACGCCCACA 59.935 52.632 15.44 0.0 43.17 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 119 8.229811 GGTTTTAGACGATGTAACCGTTATTTT 58.770 33.333 0.00 0.00 40.67 1.82
147 179 9.482175 AGTTGCCAACAATTATTATTACCCTTA 57.518 29.630 10.69 0.00 38.27 2.69
169 202 4.015872 TCTTTTGAGGTGAACGGCTAAT 57.984 40.909 0.00 0.00 0.00 1.73
206 239 2.995466 ACTTGTTGATGCATGGAACG 57.005 45.000 2.46 0.00 0.00 3.95
251 285 6.257849 TGGTGTCTTGTCGATAAGAATTATGC 59.742 38.462 23.94 12.34 42.35 3.14
275 309 7.024171 GCCTCTAGTTTGCTAAAAGCTAAAAG 58.976 38.462 0.03 1.53 42.97 2.27
285 319 7.947282 TGCTAAAAGCTAAAAGGTAACATGTT 58.053 30.769 16.68 16.68 42.97 2.71
287 321 7.865889 GCTAAAAGCTAAAAGGTAACATGTTGT 59.134 33.333 21.42 2.76 38.45 3.32
412 447 6.920758 TGAGGGACAATCATTTTTGTTTTACG 59.079 34.615 0.00 0.00 39.85 3.18
444 479 5.843019 TGATGGAGTCTTAAGTTCCCTTT 57.157 39.130 19.33 9.43 31.89 3.11
531 566 8.744568 TGTTGCCAAAAATTCTTTTCCTAAAT 57.255 26.923 0.00 0.00 32.24 1.40
581 616 6.441093 CATGTTTATCATGCACACTAGGTT 57.559 37.500 0.00 0.00 45.69 3.50
677 712 9.853177 ATAACAAGGGGTATAGAAAAGAATCAG 57.147 33.333 0.00 0.00 0.00 2.90
698 733 5.356190 TCAGCAATTTGGAATCTTCTAGCTG 59.644 40.000 0.00 0.00 45.04 4.24
713 748 6.767902 TCTTCTAGCTGCCAATTAATTACCTG 59.232 38.462 0.00 0.93 0.00 4.00
725 760 7.255906 CCAATTAATTACCTGCCTATGATTGCA 60.256 37.037 0.00 0.00 35.86 4.08
749 784 0.665068 TCCGTTTCACGTCCGACATG 60.665 55.000 0.00 0.00 40.58 3.21
758 793 2.295070 CACGTCCGACATGTATATCCCA 59.705 50.000 0.00 0.00 0.00 4.37
759 794 2.557056 ACGTCCGACATGTATATCCCAG 59.443 50.000 0.00 0.00 0.00 4.45
785 820 9.780186 GTACCAATTATAGGCTCTACAAAATCT 57.220 33.333 0.00 0.00 0.00 2.40
786 821 8.682936 ACCAATTATAGGCTCTACAAAATCTG 57.317 34.615 0.00 0.00 0.00 2.90
885 920 1.501169 GCAAGCCCAACACAATTCAC 58.499 50.000 0.00 0.00 0.00 3.18
958 999 2.507992 CCTCTCTGCTTCGTGCCG 60.508 66.667 1.30 0.00 42.00 5.69
966 1007 2.383527 GCTTCGTGCCGAGTGAAGG 61.384 63.158 3.68 0.00 39.54 3.46
995 1036 2.513026 GATGCGAGTGAGGGTGTGCT 62.513 60.000 0.00 0.00 0.00 4.40
1009 1050 3.393106 TGCTCGCCATGGCTCTCA 61.393 61.111 33.07 23.07 39.32 3.27
1029 1070 0.725686 CAGACGACCACGACGAGTAT 59.274 55.000 0.00 0.00 42.66 2.12
1084 1125 1.521681 GCAACTCGATTAGCCGCCT 60.522 57.895 0.00 0.00 0.00 5.52
1087 1128 1.062587 CAACTCGATTAGCCGCCTTTG 59.937 52.381 0.00 0.00 0.00 2.77
1116 1158 7.790823 TTGTAAAGTTAGCTTCGTTTTAGGT 57.209 32.000 0.00 0.00 33.01 3.08
1127 1169 5.182570 GCTTCGTTTTAGGTATTTCTTGGGT 59.817 40.000 0.00 0.00 0.00 4.51
1137 1180 5.648092 AGGTATTTCTTGGGTTCATTTCGAG 59.352 40.000 0.00 0.00 0.00 4.04
1162 1205 1.610522 GCAGTTCTTGACCTGCACAAT 59.389 47.619 13.90 0.00 41.89 2.71
1168 1211 4.998671 TCTTGACCTGCACAATTTTTGA 57.001 36.364 0.00 0.00 0.00 2.69
1193 1236 2.900546 TGGTTTCCTTTTGTTGGTGTGT 59.099 40.909 0.00 0.00 0.00 3.72
1194 1237 3.325135 TGGTTTCCTTTTGTTGGTGTGTT 59.675 39.130 0.00 0.00 0.00 3.32
1195 1238 3.682377 GGTTTCCTTTTGTTGGTGTGTTG 59.318 43.478 0.00 0.00 0.00 3.33
1196 1239 4.311606 GTTTCCTTTTGTTGGTGTGTTGT 58.688 39.130 0.00 0.00 0.00 3.32
1197 1240 5.471257 GTTTCCTTTTGTTGGTGTGTTGTA 58.529 37.500 0.00 0.00 0.00 2.41
1207 1250 5.654650 TGTTGGTGTGTTGTATTCTTCCTTT 59.345 36.000 0.00 0.00 0.00 3.11
1251 1294 4.306245 AGGACGGTCCTTGGTTGA 57.694 55.556 23.90 0.00 46.91 3.18
1311 1373 3.134127 GGGGATTGGACGTGCTGC 61.134 66.667 8.99 0.00 0.00 5.25
1529 1591 2.423898 TTCTTCTAGCCCTCCGCCG 61.424 63.158 0.00 0.00 38.78 6.46
1556 1618 4.004314 TCCGCGGAATCTAACAAATTTCA 58.996 39.130 28.99 0.00 0.00 2.69
1571 1633 6.626302 ACAAATTTCAGTTCTTCGTTTTCCA 58.374 32.000 0.00 0.00 0.00 3.53
1599 1661 0.238289 CCGCAGTGTTCAATGTCACC 59.762 55.000 2.44 0.00 35.45 4.02
1668 1730 4.566004 TCCAGACGGTAATTCACTGAAAG 58.434 43.478 0.00 0.00 36.95 2.62
1669 1731 4.282449 TCCAGACGGTAATTCACTGAAAGA 59.718 41.667 0.00 0.00 36.95 2.52
1670 1732 4.994852 CCAGACGGTAATTCACTGAAAGAA 59.005 41.667 0.00 0.00 36.95 2.52
1671 1733 5.468746 CCAGACGGTAATTCACTGAAAGAAA 59.531 40.000 0.00 0.00 36.95 2.52
1685 1747 1.256812 AAGAAATTTGGTGCCCGGAG 58.743 50.000 0.73 0.00 0.00 4.63
1705 1767 5.393027 CGGAGGATGGAGTTTTTAATTGTGG 60.393 44.000 0.00 0.00 0.00 4.17
1732 1796 4.984785 GGAGTTTTTGAGGATTGAGTTTGC 59.015 41.667 0.00 0.00 0.00 3.68
1834 1902 3.209812 TCGATCGAGCTCACGGGG 61.210 66.667 15.15 0.00 0.00 5.73
2248 2316 2.658707 GCTGCTGTTCGACACCGTC 61.659 63.158 0.00 0.00 37.05 4.79
2260 2328 2.048222 ACCGTCTGCACCATCACG 60.048 61.111 0.00 0.00 0.00 4.35
2488 2556 2.745100 CTCTCCGACGTCACCCGA 60.745 66.667 17.16 5.11 40.70 5.14
3123 3193 2.494073 TGTGTATGCATCGTGTGTCCTA 59.506 45.455 0.19 0.00 0.00 2.94
3130 3200 4.765273 TGCATCGTGTGTCCTATGTTTAT 58.235 39.130 0.00 0.00 0.00 1.40
3137 3207 8.780846 TCGTGTGTCCTATGTTTATAATTTGT 57.219 30.769 0.00 0.00 0.00 2.83
3239 3309 0.331278 TTTGGATTGGCCTGACGGAT 59.669 50.000 3.32 0.00 37.63 4.18
3243 3313 1.077501 ATTGGCCTGACGGATGTGG 60.078 57.895 3.32 0.00 0.00 4.17
3267 3337 4.291783 CGTTCGCTTTTTGATTTGGGTTA 58.708 39.130 0.00 0.00 0.00 2.85
3304 3374 2.501316 GGAAGGCATACCCATTTTTGCT 59.499 45.455 0.00 0.00 36.11 3.91
3380 3451 0.679960 GCCGGCCAAAGTCCACTTAT 60.680 55.000 18.11 0.00 34.61 1.73
3382 3453 2.942306 GCCGGCCAAAGTCCACTTATAA 60.942 50.000 18.11 0.00 34.61 0.98
3385 3456 3.181514 CGGCCAAAGTCCACTTATAAACG 60.182 47.826 2.24 0.00 34.61 3.60
3427 3499 2.097201 TACCAAACACCCGCACGCTA 62.097 55.000 0.00 0.00 0.00 4.26
3447 3519 1.273324 ACCCTAGTAGACTGCCTTGCT 60.273 52.381 0.00 0.00 0.00 3.91
3458 3542 2.341176 CCTTGCTGTTGCCCTTGC 59.659 61.111 0.00 0.00 38.71 4.01
3460 3544 3.562779 CTTGCTGTTGCCCTTGCCG 62.563 63.158 0.00 0.00 38.71 5.69
3461 3545 4.892965 TGCTGTTGCCCTTGCCGT 62.893 61.111 0.00 0.00 38.71 5.68
3462 3546 3.605664 GCTGTTGCCCTTGCCGTT 61.606 61.111 0.00 0.00 36.33 4.44
3473 3557 3.754740 TTGCCGTTGTCGTCGTCGT 62.755 57.895 1.33 0.00 38.33 4.34
3638 3793 1.746615 GTGCTCCCGATGCATGTGT 60.747 57.895 2.46 0.00 42.69 3.72
3754 3909 3.753434 CGCGCTCACCCACTCTCT 61.753 66.667 5.56 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 179 2.568623 AGCCGTTCACCTCAAAAGAT 57.431 45.000 0.00 0.00 0.00 2.40
169 202 8.363390 TCAACAAGTTTTATTGAATACCATGCA 58.637 29.630 0.00 0.00 34.20 3.96
206 239 6.879458 ACACCAACCATCTCAACTTATAAGTC 59.121 38.462 18.28 0.00 38.57 3.01
251 285 7.175119 ACCTTTTAGCTTTTAGCAAACTAGAGG 59.825 37.037 0.00 6.16 45.56 3.69
275 309 8.641499 TCTTTCATTTTCAACAACATGTTACC 57.359 30.769 11.53 0.00 38.77 2.85
285 319 7.555087 ACCTCATGTTTCTTTCATTTTCAACA 58.445 30.769 0.00 0.00 0.00 3.33
287 321 7.069826 AGGACCTCATGTTTCTTTCATTTTCAA 59.930 33.333 0.00 0.00 0.00 2.69
362 397 6.676237 TCCCTCAAAAGAAAATTTGTTTGC 57.324 33.333 13.51 0.00 40.40 3.68
412 447 3.540314 AGACTCCATCATCAGCTTCAC 57.460 47.619 0.00 0.00 0.00 3.18
444 479 6.206438 TCAAATCAAAACATCATGAGGAACGA 59.794 34.615 15.42 5.29 0.00 3.85
531 566 1.930251 TGGGGAATGGCGATGAAAAA 58.070 45.000 0.00 0.00 0.00 1.94
540 575 3.260632 ACATGTAAAACTTGGGGAATGGC 59.739 43.478 0.00 0.00 0.00 4.40
541 576 5.482163 AACATGTAAAACTTGGGGAATGG 57.518 39.130 0.00 0.00 0.00 3.16
581 616 1.315690 AGTAGCCGTCGCTTAGCATA 58.684 50.000 4.70 0.00 45.55 3.14
631 666 6.094325 TGTTATTGGAACGTGTGTTTCTTTCT 59.906 34.615 0.00 0.00 38.78 2.52
640 675 2.227865 CCCCTTGTTATTGGAACGTGTG 59.772 50.000 0.00 0.00 0.00 3.82
677 712 4.357996 GCAGCTAGAAGATTCCAAATTGC 58.642 43.478 0.00 0.00 0.00 3.56
698 733 6.840780 ATCATAGGCAGGTAATTAATTGGC 57.159 37.500 11.05 13.18 36.47 4.52
713 748 5.376854 AACGGAATTATGCAATCATAGGC 57.623 39.130 0.00 0.00 36.60 3.93
749 784 8.320338 AGCCTATAATTGGTACTGGGATATAC 57.680 38.462 0.00 0.00 0.00 1.47
758 793 9.780186 GATTTTGTAGAGCCTATAATTGGTACT 57.220 33.333 0.00 0.00 0.00 2.73
759 794 9.780186 AGATTTTGTAGAGCCTATAATTGGTAC 57.220 33.333 0.00 0.00 0.00 3.34
785 820 0.389757 TGAACGGGTTGATGTCGACA 59.610 50.000 22.48 22.48 31.82 4.35
786 821 1.659098 GATGAACGGGTTGATGTCGAC 59.341 52.381 9.11 9.11 0.00 4.20
885 920 4.125703 GAGAGAGAGAGAGAGAGAGCTTG 58.874 52.174 0.00 0.00 0.00 4.01
958 999 3.126000 GCATCAACAGCTTACCTTCACTC 59.874 47.826 0.00 0.00 0.00 3.51
966 1007 2.337583 TCACTCGCATCAACAGCTTAC 58.662 47.619 0.00 0.00 0.00 2.34
1009 1050 0.601046 TACTCGTCGTGGTCGTCTGT 60.601 55.000 0.00 0.00 38.33 3.41
1084 1125 7.030768 ACGAAGCTAACTTTACAAAAAGCAAA 58.969 30.769 0.00 0.00 45.06 3.68
1087 1128 7.445900 AAACGAAGCTAACTTTACAAAAAGC 57.554 32.000 0.00 0.00 45.06 3.51
1116 1158 7.519032 AAACTCGAAATGAACCCAAGAAATA 57.481 32.000 0.00 0.00 0.00 1.40
1127 1169 5.499139 AGAACTGCAAAACTCGAAATGAA 57.501 34.783 0.00 0.00 0.00 2.57
1162 1205 7.120432 CCAACAAAAGGAAACCAGAATCAAAAA 59.880 33.333 0.00 0.00 0.00 1.94
1168 1211 4.469586 ACACCAACAAAAGGAAACCAGAAT 59.530 37.500 0.00 0.00 0.00 2.40
1193 1236 7.689299 TGAGGATCAAGAAAGGAAGAATACAA 58.311 34.615 0.00 0.00 45.97 2.41
1194 1237 7.257790 TGAGGATCAAGAAAGGAAGAATACA 57.742 36.000 0.00 0.00 45.97 2.29
1251 1294 3.117738 AGCAGAGGATTCCCAATTTCGAT 60.118 43.478 0.00 0.00 33.88 3.59
1311 1373 0.320683 TGTCGATCACAACCCTGCAG 60.321 55.000 6.78 6.78 29.30 4.41
1529 1591 4.609691 TTGTTAGATTCCGCGGAAATTC 57.390 40.909 41.31 33.35 37.69 2.17
1556 1618 4.457949 ACAACAAGTGGAAAACGAAGAACT 59.542 37.500 0.00 0.00 0.00 3.01
1571 1633 1.014352 GAACACTGCGGACAACAAGT 58.986 50.000 0.00 0.00 0.00 3.16
1599 1661 2.019951 CTTGTTCCCGTCACGGTCG 61.020 63.158 16.87 0.00 46.80 4.79
1685 1747 4.082463 TCGCCACAATTAAAAACTCCATCC 60.082 41.667 0.00 0.00 0.00 3.51
1698 1760 2.955660 TCAAAAACTCCTCGCCACAATT 59.044 40.909 0.00 0.00 0.00 2.32
1705 1767 3.074412 TCAATCCTCAAAAACTCCTCGC 58.926 45.455 0.00 0.00 0.00 5.03
1732 1796 1.563435 CTTCCAGCGTCTGCACACAG 61.563 60.000 0.00 0.00 46.23 3.66
1745 1813 0.465705 TAGCAATCCTCGGCTTCCAG 59.534 55.000 0.00 0.00 41.41 3.86
1759 1827 1.001248 AGCCTCCGGGTAGTAGCAA 59.999 57.895 0.00 0.00 34.45 3.91
1777 1845 4.634703 ATGCCCACCGTGTTGCGA 62.635 61.111 0.00 0.00 44.77 5.10
2248 2316 1.985447 GCATGTCCGTGATGGTGCAG 61.985 60.000 0.40 0.00 39.52 4.41
2260 2328 0.739813 GGACCACGTACTGCATGTCC 60.740 60.000 0.00 0.00 35.91 4.02
2584 2652 1.059584 TCTTGGCTTCCACTGGGTGA 61.060 55.000 0.00 0.00 35.23 4.02
2704 2772 1.080974 GAAGAGGAACGCCGTCGAA 60.081 57.895 0.00 0.00 39.96 3.71
2801 2869 7.670364 TGTGAACCCTACATATGATATCTGTG 58.330 38.462 10.38 3.04 0.00 3.66
2807 2875 8.950007 TGTATCTGTGAACCCTACATATGATA 57.050 34.615 10.38 0.00 0.00 2.15
3102 3172 1.275010 AGGACACACGATGCATACACA 59.725 47.619 0.00 0.00 0.00 3.72
3106 3176 4.400529 AACATAGGACACACGATGCATA 57.599 40.909 0.00 0.00 0.00 3.14
3130 3200 8.417106 TGCAAATGAACACCTTCTTACAAATTA 58.583 29.630 0.00 0.00 0.00 1.40
3137 3207 6.815089 ACAAATGCAAATGAACACCTTCTTA 58.185 32.000 8.89 0.00 0.00 2.10
3227 3297 3.716195 CCCACATCCGTCAGGCCA 61.716 66.667 5.01 0.00 37.47 5.36
3232 3302 2.047655 GAACGCCCACATCCGTCA 60.048 61.111 0.00 0.00 36.56 4.35
3239 3309 1.064946 CAAAAAGCGAACGCCCACA 59.935 52.632 15.44 0.00 43.17 4.17
3243 3313 1.455408 CCAAATCAAAAAGCGAACGCC 59.545 47.619 15.44 0.00 43.17 5.68
3267 3337 2.434884 CCGTTGGTCGCATCTGCT 60.435 61.111 0.09 0.00 39.32 4.24
3277 3347 1.301954 GGGTATGCCTTCCGTTGGT 59.698 57.895 0.00 0.00 34.45 3.67
3304 3374 2.063015 AACCAGTTCCGGCCACATCA 62.063 55.000 2.24 0.00 0.00 3.07
3352 3423 1.532794 TTTGGCCGGCATTTGACCT 60.533 52.632 30.85 0.00 0.00 3.85
3410 3481 2.666862 TAGCGTGCGGGTGTTTGG 60.667 61.111 0.00 0.00 0.00 3.28
3411 3482 2.554272 GTAGCGTGCGGGTGTTTG 59.446 61.111 0.00 0.00 0.00 2.93
3427 3499 1.196012 GCAAGGCAGTCTACTAGGGT 58.804 55.000 0.00 0.00 0.00 4.34
3447 3519 2.441164 ACAACGGCAAGGGCAACA 60.441 55.556 0.00 0.00 43.71 3.33
3458 3542 3.154952 CGACGACGACGACAACGG 61.155 66.667 15.32 0.00 44.46 4.44
3460 3544 3.456039 GGCGACGACGACGACAAC 61.456 66.667 22.94 5.31 42.66 3.32
3473 3557 1.338973 GTATTCATACCTCACCGGCGA 59.661 52.381 9.30 0.00 35.61 5.54
3546 3632 1.517257 CGCATCAGACACCGGAGAC 60.517 63.158 9.46 0.00 0.00 3.36
3547 3633 2.710902 CCGCATCAGACACCGGAGA 61.711 63.158 9.46 0.00 43.20 3.71
3620 3775 1.709147 GACACATGCATCGGGAGCAC 61.709 60.000 0.00 0.00 45.95 4.40
3702 3857 1.754234 CCTCCATGCCGGAAAAGGG 60.754 63.158 5.05 0.01 45.75 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.