Multiple sequence alignment - TraesCS2A01G285000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G285000 chr2A 100.000 3629 0 0 1 3629 478900496 478904124 0.000000e+00 6702
1 TraesCS2A01G285000 chr2A 85.481 613 53 14 89 695 735546488 735547070 1.110000e-169 606
2 TraesCS2A01G285000 chr6A 96.036 883 30 4 2749 3629 120116465 120117344 0.000000e+00 1432
3 TraesCS2A01G285000 chr5A 95.465 882 36 3 2749 3629 583623116 583623994 0.000000e+00 1404
4 TraesCS2A01G285000 chr5A 96.115 798 28 2 2833 3629 429980727 429979932 0.000000e+00 1299
5 TraesCS2A01G285000 chr2D 94.898 882 40 3 2749 3629 190432968 190432091 0.000000e+00 1375
6 TraesCS2A01G285000 chr2D 94.451 883 43 4 2749 3629 650976174 650975296 0.000000e+00 1354
7 TraesCS2A01G285000 chr2D 88.537 1073 50 34 697 1699 357975711 357976780 0.000000e+00 1232
8 TraesCS2A01G285000 chr2D 85.835 713 57 20 2054 2725 357977114 357977823 0.000000e+00 717
9 TraesCS2A01G285000 chr2D 90.659 182 10 4 1746 1927 357976893 357977067 6.060000e-58 235
10 TraesCS2A01G285000 chr3A 92.395 881 46 6 2749 3629 632541056 632541915 0.000000e+00 1236
11 TraesCS2A01G285000 chr1B 91.610 882 68 3 2749 3629 527624352 527623476 0.000000e+00 1214
12 TraesCS2A01G285000 chr1B 90.270 853 74 4 2777 3629 293588746 293589589 0.000000e+00 1107
13 TraesCS2A01G285000 chr2B 89.166 923 47 21 692 1563 425436893 425437813 0.000000e+00 1101
14 TraesCS2A01G285000 chr2B 87.571 885 101 6 2749 3629 658204257 658203378 0.000000e+00 1016
15 TraesCS2A01G285000 chr2B 88.491 643 38 16 2089 2698 425438370 425439009 0.000000e+00 745
16 TraesCS2A01G285000 chr2B 95.135 185 9 0 1743 1927 425438080 425438264 3.540000e-75 292
17 TraesCS2A01G285000 chr2B 93.506 154 10 0 1568 1721 425437848 425438001 2.820000e-56 230
18 TraesCS2A01G285000 chr7D 94.421 699 27 6 1 696 604380370 604381059 0.000000e+00 1064
19 TraesCS2A01G285000 chr7D 93.840 698 34 3 1 695 604377878 604377187 0.000000e+00 1042
20 TraesCS2A01G285000 chr7D 88.235 170 12 3 523 689 604378545 604378381 2.860000e-46 196
21 TraesCS2A01G285000 chr5B 93.000 700 39 4 1 697 447185772 447185080 0.000000e+00 1013
22 TraesCS2A01G285000 chr5B 88.000 175 11 4 523 693 447187634 447187802 7.950000e-47 198
23 TraesCS2A01G285000 chr7A 91.547 698 28 4 1 698 640633687 640634353 0.000000e+00 933
24 TraesCS2A01G285000 chr7A 90.588 170 9 3 533 701 640599514 640599351 6.100000e-53 219
25 TraesCS2A01G285000 chr4D 83.819 618 64 15 89 697 9744457 9743867 4.090000e-154 555
26 TraesCS2A01G285000 chr4A 85.714 287 37 4 89 374 593479402 593479685 2.120000e-77 300
27 TraesCS2A01G285000 chr3B 90.278 144 7 2 96 238 685230904 685231041 8.000000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G285000 chr2A 478900496 478904124 3628 False 6702 6702 100.000000 1 3629 1 chr2A.!!$F1 3628
1 TraesCS2A01G285000 chr2A 735546488 735547070 582 False 606 606 85.481000 89 695 1 chr2A.!!$F2 606
2 TraesCS2A01G285000 chr6A 120116465 120117344 879 False 1432 1432 96.036000 2749 3629 1 chr6A.!!$F1 880
3 TraesCS2A01G285000 chr5A 583623116 583623994 878 False 1404 1404 95.465000 2749 3629 1 chr5A.!!$F1 880
4 TraesCS2A01G285000 chr5A 429979932 429980727 795 True 1299 1299 96.115000 2833 3629 1 chr5A.!!$R1 796
5 TraesCS2A01G285000 chr2D 190432091 190432968 877 True 1375 1375 94.898000 2749 3629 1 chr2D.!!$R1 880
6 TraesCS2A01G285000 chr2D 650975296 650976174 878 True 1354 1354 94.451000 2749 3629 1 chr2D.!!$R2 880
7 TraesCS2A01G285000 chr2D 357975711 357977823 2112 False 728 1232 88.343667 697 2725 3 chr2D.!!$F1 2028
8 TraesCS2A01G285000 chr3A 632541056 632541915 859 False 1236 1236 92.395000 2749 3629 1 chr3A.!!$F1 880
9 TraesCS2A01G285000 chr1B 527623476 527624352 876 True 1214 1214 91.610000 2749 3629 1 chr1B.!!$R1 880
10 TraesCS2A01G285000 chr1B 293588746 293589589 843 False 1107 1107 90.270000 2777 3629 1 chr1B.!!$F1 852
11 TraesCS2A01G285000 chr2B 658203378 658204257 879 True 1016 1016 87.571000 2749 3629 1 chr2B.!!$R1 880
12 TraesCS2A01G285000 chr2B 425436893 425439009 2116 False 592 1101 91.574500 692 2698 4 chr2B.!!$F1 2006
13 TraesCS2A01G285000 chr7D 604380370 604381059 689 False 1064 1064 94.421000 1 696 1 chr7D.!!$F1 695
14 TraesCS2A01G285000 chr7D 604377187 604378545 1358 True 619 1042 91.037500 1 695 2 chr7D.!!$R1 694
15 TraesCS2A01G285000 chr5B 447185080 447185772 692 True 1013 1013 93.000000 1 697 1 chr5B.!!$R1 696
16 TraesCS2A01G285000 chr7A 640633687 640634353 666 False 933 933 91.547000 1 698 1 chr7A.!!$F1 697
17 TraesCS2A01G285000 chr4D 9743867 9744457 590 True 555 555 83.819000 89 697 1 chr4D.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1627 0.034089 TCTCTCCTGGTCTCATGCGA 60.034 55.0 0.00 0.0 0.00 5.10 F
946 1663 0.179163 CGAGCGCACTACAGACATCA 60.179 55.0 11.47 0.0 0.00 3.07 F
1703 2482 0.971386 TCTTGGTACTGTTCGGTCCC 59.029 55.0 0.00 0.0 0.00 4.46 F
2224 3103 0.693049 GGGAAGCACCTCTCCAAAGA 59.307 55.0 0.29 0.0 38.98 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2908 0.039074 GCTCACGTCTGCACACTAGT 60.039 55.0 4.63 0.0 0.00 2.57 R
2039 2909 0.039165 TGCTCACGTCTGCACACTAG 60.039 55.0 7.78 0.0 33.94 2.57 R
2608 3518 0.108520 TACTCCCGTTTGATGTCCGC 60.109 55.0 0.00 0.0 0.00 5.54 R
3335 4256 0.250597 ACCCGGCGCTTTTAAGTCTT 60.251 50.0 7.64 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 753 0.396974 TGACTGCTGCACCCCTTTTT 60.397 50.000 0.00 0.00 0.00 1.94
278 948 1.050421 GGCCATGGAATTGGGAAGGG 61.050 60.000 18.40 0.00 37.24 3.95
313 988 2.183300 GTGCGACGGACATGGCTA 59.817 61.111 15.10 0.00 0.00 3.93
356 1034 2.355363 TCGACCAGAAACGTGGCG 60.355 61.111 0.00 0.00 41.90 5.69
442 1120 3.003763 GCTGGACGGGGAAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
622 1311 3.073209 AGCTATCGTCAGATGAGGAGGTA 59.927 47.826 10.59 0.10 41.47 3.08
674 1363 2.146342 CACGAGATGGAGTTTGCAACT 58.854 47.619 0.00 0.00 46.38 3.16
680 1370 4.265073 AGATGGAGTTTGCAACTGGTATC 58.735 43.478 0.00 1.37 43.03 2.24
850 1548 2.108976 CCACGCGTCCAGCCATAT 59.891 61.111 9.86 0.00 44.76 1.78
882 1580 3.073735 CAGCCTGAGACTCCCGCT 61.074 66.667 7.41 7.41 0.00 5.52
906 1604 1.181741 TGCAGTGAAGCTCCTCGAGT 61.182 55.000 12.31 0.00 34.99 4.18
909 1607 0.600557 AGTGAAGCTCCTCGAGTGTG 59.399 55.000 12.31 5.26 31.39 3.82
920 1618 0.110678 TCGAGTGTGTCTCTCCTGGT 59.889 55.000 0.00 0.00 40.75 4.00
926 1624 2.094286 GTGTGTCTCTCCTGGTCTCATG 60.094 54.545 0.00 0.00 0.00 3.07
928 1626 0.102120 GTCTCTCCTGGTCTCATGCG 59.898 60.000 0.00 0.00 0.00 4.73
929 1627 0.034089 TCTCTCCTGGTCTCATGCGA 60.034 55.000 0.00 0.00 0.00 5.10
930 1628 0.385029 CTCTCCTGGTCTCATGCGAG 59.615 60.000 0.00 0.00 40.98 5.03
933 1631 3.260483 CTGGTCTCATGCGAGCGC 61.260 66.667 8.08 8.08 39.30 5.92
944 1661 1.517257 GCGAGCGCACTACAGACAT 60.517 57.895 11.47 0.00 41.49 3.06
946 1663 0.179163 CGAGCGCACTACAGACATCA 60.179 55.000 11.47 0.00 0.00 3.07
947 1664 1.732405 CGAGCGCACTACAGACATCAA 60.732 52.381 11.47 0.00 0.00 2.57
948 1665 1.923204 GAGCGCACTACAGACATCAAG 59.077 52.381 11.47 0.00 0.00 3.02
974 1691 1.151587 AGCCCCAAGGAAGGAAGGA 60.152 57.895 0.00 0.00 33.47 3.36
981 1698 3.425659 CCAAGGAAGGAAGGAAAGGAAG 58.574 50.000 0.00 0.00 0.00 3.46
992 1714 1.558233 GAAAGGAAGGAGGAGGTCGA 58.442 55.000 0.00 0.00 0.00 4.20
1095 1817 4.424711 TTCATGGACTGGGCGGCC 62.425 66.667 23.42 23.42 0.00 6.13
1534 2279 1.974249 GCTTTGGCCGGCGTAAGTAC 61.974 60.000 28.83 16.38 41.68 2.73
1545 2294 1.202382 GCGTAAGTACCCACCTGCTAG 60.202 57.143 0.00 0.00 41.68 3.42
1563 2312 4.141937 TGCTAGTTACTGCCTACCTTGATG 60.142 45.833 0.00 0.00 0.00 3.07
1564 2313 4.099573 GCTAGTTACTGCCTACCTTGATGA 59.900 45.833 0.00 0.00 0.00 2.92
1565 2314 4.744795 AGTTACTGCCTACCTTGATGAG 57.255 45.455 0.00 0.00 0.00 2.90
1703 2482 0.971386 TCTTGGTACTGTTCGGTCCC 59.029 55.000 0.00 0.00 0.00 4.46
1780 2642 2.684374 TGATGCTGATATGTGTTGGTGC 59.316 45.455 0.00 0.00 0.00 5.01
1928 2798 6.491714 AGGATGAGCTTCTACAATGTACAT 57.508 37.500 1.41 1.41 0.00 2.29
1930 2800 7.341805 AGGATGAGCTTCTACAATGTACATTT 58.658 34.615 18.50 12.21 0.00 2.32
1933 2803 5.880332 TGAGCTTCTACAATGTACATTTCCC 59.120 40.000 18.50 3.74 0.00 3.97
1934 2804 6.067217 AGCTTCTACAATGTACATTTCCCT 57.933 37.500 18.50 5.77 0.00 4.20
1936 2806 5.006746 GCTTCTACAATGTACATTTCCCTCG 59.993 44.000 18.50 8.84 0.00 4.63
1937 2807 4.439057 TCTACAATGTACATTTCCCTCGC 58.561 43.478 18.50 0.00 0.00 5.03
1940 2810 2.332063 ATGTACATTTCCCTCGCCAG 57.668 50.000 1.41 0.00 0.00 4.85
1971 2841 3.975168 TTTTCCTTTCTACTCCCTCCG 57.025 47.619 0.00 0.00 0.00 4.63
1972 2842 2.617840 TTCCTTTCTACTCCCTCCGT 57.382 50.000 0.00 0.00 0.00 4.69
1973 2843 3.744940 TTCCTTTCTACTCCCTCCGTA 57.255 47.619 0.00 0.00 0.00 4.02
1975 2845 3.830121 TCCTTTCTACTCCCTCCGTATC 58.170 50.000 0.00 0.00 0.00 2.24
1976 2846 3.203710 TCCTTTCTACTCCCTCCGTATCA 59.796 47.826 0.00 0.00 0.00 2.15
1977 2847 4.140994 TCCTTTCTACTCCCTCCGTATCAT 60.141 45.833 0.00 0.00 0.00 2.45
1978 2848 5.074102 TCCTTTCTACTCCCTCCGTATCATA 59.926 44.000 0.00 0.00 0.00 2.15
1979 2849 5.773680 CCTTTCTACTCCCTCCGTATCATAA 59.226 44.000 0.00 0.00 0.00 1.90
1981 2851 7.614583 CCTTTCTACTCCCTCCGTATCATAATA 59.385 40.741 0.00 0.00 0.00 0.98
1982 2852 9.191479 CTTTCTACTCCCTCCGTATCATAATAT 57.809 37.037 0.00 0.00 0.00 1.28
1983 2853 9.543231 TTTCTACTCCCTCCGTATCATAATATT 57.457 33.333 0.00 0.00 0.00 1.28
1984 2854 9.543231 TTCTACTCCCTCCGTATCATAATATTT 57.457 33.333 0.00 0.00 0.00 1.40
1986 2856 7.554959 ACTCCCTCCGTATCATAATATTTGT 57.445 36.000 0.00 0.00 0.00 2.83
1987 2857 7.974504 ACTCCCTCCGTATCATAATATTTGTT 58.025 34.615 0.00 0.00 0.00 2.83
1988 2858 7.878127 ACTCCCTCCGTATCATAATATTTGTTG 59.122 37.037 0.00 0.00 0.00 3.33
1989 2859 7.741785 TCCCTCCGTATCATAATATTTGTTGT 58.258 34.615 0.00 0.00 0.00 3.32
1990 2860 8.215050 TCCCTCCGTATCATAATATTTGTTGTT 58.785 33.333 0.00 0.00 0.00 2.83
1991 2861 8.846211 CCCTCCGTATCATAATATTTGTTGTTT 58.154 33.333 0.00 0.00 0.00 2.83
2007 2877 9.816354 ATTTGTTGTTTTAGCAGTTCAATTACT 57.184 25.926 0.00 0.00 0.00 2.24
2014 2884 9.654417 GTTTTAGCAGTTCAATTACTAAAACGA 57.346 29.630 16.36 0.00 45.84 3.85
2015 2885 9.654417 TTTTAGCAGTTCAATTACTAAAACGAC 57.346 29.630 0.00 0.00 37.69 4.34
2016 2886 6.854496 AGCAGTTCAATTACTAAAACGACA 57.146 33.333 0.00 0.00 0.00 4.35
2017 2887 7.435068 AGCAGTTCAATTACTAAAACGACAT 57.565 32.000 0.00 0.00 0.00 3.06
2018 2888 8.542497 AGCAGTTCAATTACTAAAACGACATA 57.458 30.769 0.00 0.00 0.00 2.29
2019 2889 9.162764 AGCAGTTCAATTACTAAAACGACATAT 57.837 29.630 0.00 0.00 0.00 1.78
2045 2915 4.923516 TGGTACAGAGGAGTACTAGTGT 57.076 45.455 5.39 0.00 43.01 3.55
2046 2916 4.586884 TGGTACAGAGGAGTACTAGTGTG 58.413 47.826 5.39 0.00 43.01 3.82
2047 2917 3.377798 GGTACAGAGGAGTACTAGTGTGC 59.622 52.174 5.39 0.90 43.01 4.57
2048 2918 3.156288 ACAGAGGAGTACTAGTGTGCA 57.844 47.619 5.39 0.00 0.00 4.57
2049 2919 3.085533 ACAGAGGAGTACTAGTGTGCAG 58.914 50.000 5.39 0.00 0.00 4.41
2050 2920 3.244946 ACAGAGGAGTACTAGTGTGCAGA 60.245 47.826 5.39 0.00 0.00 4.26
2051 2921 3.127895 CAGAGGAGTACTAGTGTGCAGAC 59.872 52.174 5.72 5.72 0.00 3.51
2052 2922 2.085320 AGGAGTACTAGTGTGCAGACG 58.915 52.381 8.52 0.00 0.00 4.18
2055 2925 2.483106 GAGTACTAGTGTGCAGACGTGA 59.517 50.000 8.52 0.00 0.00 4.35
2069 2942 0.865769 ACGTGAGCATTTTGACGACC 59.134 50.000 0.00 0.00 35.77 4.79
2075 2948 2.927477 GAGCATTTTGACGACCGATACA 59.073 45.455 0.00 0.00 0.00 2.29
2082 2955 2.097036 TGACGACCGATACATGTTCCT 58.903 47.619 2.30 0.00 0.00 3.36
2084 2957 3.695556 TGACGACCGATACATGTTCCTTA 59.304 43.478 2.30 0.00 0.00 2.69
2086 2959 4.868067 ACGACCGATACATGTTCCTTATC 58.132 43.478 2.30 0.00 0.00 1.75
2224 3103 0.693049 GGGAAGCACCTCTCCAAAGA 59.307 55.000 0.29 0.00 38.98 2.52
2252 3131 0.895530 TGGAGGTCGATCAAGACACC 59.104 55.000 0.00 6.29 42.62 4.16
2267 3146 1.072331 GACACCAGGGATGTGAGTTGT 59.928 52.381 0.00 0.00 37.18 3.32
2269 3148 1.881973 CACCAGGGATGTGAGTTGTTG 59.118 52.381 0.00 0.00 35.74 3.33
2270 3149 0.883833 CCAGGGATGTGAGTTGTTGC 59.116 55.000 0.00 0.00 0.00 4.17
2271 3150 1.608055 CAGGGATGTGAGTTGTTGCA 58.392 50.000 0.00 0.00 0.00 4.08
2272 3151 1.267806 CAGGGATGTGAGTTGTTGCAC 59.732 52.381 0.00 0.00 35.63 4.57
2274 3153 1.317613 GGATGTGAGTTGTTGCACCA 58.682 50.000 0.00 0.00 34.19 4.17
2275 3154 1.001378 GGATGTGAGTTGTTGCACCAC 60.001 52.381 0.00 0.00 34.19 4.16
2276 3155 1.949525 GATGTGAGTTGTTGCACCACT 59.050 47.619 0.00 0.00 34.19 4.00
2277 3156 1.832883 TGTGAGTTGTTGCACCACTT 58.167 45.000 0.00 0.00 34.19 3.16
2279 3158 1.742831 GTGAGTTGTTGCACCACTTCA 59.257 47.619 0.00 0.00 0.00 3.02
2282 3161 2.017049 AGTTGTTGCACCACTTCAGAC 58.983 47.619 0.00 0.00 0.00 3.51
2295 3196 3.651803 CTTCAGACAGAAGTTCTCGGT 57.348 47.619 1.26 0.00 46.97 4.69
2300 3201 5.470368 TCAGACAGAAGTTCTCGGTATTTG 58.530 41.667 1.26 0.19 32.01 2.32
2301 3202 5.010719 TCAGACAGAAGTTCTCGGTATTTGT 59.989 40.000 1.26 0.00 32.01 2.83
2302 3203 5.119279 CAGACAGAAGTTCTCGGTATTTGTG 59.881 44.000 1.26 0.00 32.01 3.33
2303 3204 5.010719 AGACAGAAGTTCTCGGTATTTGTGA 59.989 40.000 1.26 0.00 32.01 3.58
2305 3206 5.465724 ACAGAAGTTCTCGGTATTTGTGAAC 59.534 40.000 1.26 0.00 39.11 3.18
2306 3207 4.684703 AGAAGTTCTCGGTATTTGTGAACG 59.315 41.667 0.00 0.00 41.95 3.95
2307 3208 3.323243 AGTTCTCGGTATTTGTGAACGG 58.677 45.455 0.00 0.00 41.95 4.44
2308 3209 3.062042 GTTCTCGGTATTTGTGAACGGT 58.938 45.455 0.00 0.00 32.35 4.83
2309 3210 2.679450 TCTCGGTATTTGTGAACGGTG 58.321 47.619 0.00 0.00 0.00 4.94
2445 3355 4.675029 GTGCCGCTGTGGTACCGT 62.675 66.667 16.43 0.00 46.76 4.83
2466 3376 3.059982 CTGTTCCTCTGGCGGTCA 58.940 61.111 0.00 0.00 0.00 4.02
2508 3418 2.009774 GTCCTGCAACGCATGTTCTAT 58.990 47.619 0.00 0.00 38.13 1.98
2630 3540 2.479730 CGGACATCAAACGGGAGTAGAG 60.480 54.545 0.00 0.00 46.69 2.43
2631 3541 2.496470 GGACATCAAACGGGAGTAGAGT 59.504 50.000 0.00 0.00 46.69 3.24
2632 3542 3.698040 GGACATCAAACGGGAGTAGAGTA 59.302 47.826 0.00 0.00 46.69 2.59
2633 3543 4.202030 GGACATCAAACGGGAGTAGAGTAG 60.202 50.000 0.00 0.00 46.69 2.57
2635 3545 4.641094 ACATCAAACGGGAGTAGAGTAGAG 59.359 45.833 0.00 0.00 46.69 2.43
2636 3546 3.015327 TCAAACGGGAGTAGAGTAGAGC 58.985 50.000 0.00 0.00 46.69 4.09
2637 3547 2.753452 CAAACGGGAGTAGAGTAGAGCA 59.247 50.000 0.00 0.00 46.69 4.26
2639 3549 1.134037 ACGGGAGTAGAGTAGAGCAGG 60.134 57.143 0.00 0.00 44.60 4.85
2640 3550 1.134037 CGGGAGTAGAGTAGAGCAGGT 60.134 57.143 0.00 0.00 0.00 4.00
2641 3551 2.303175 GGGAGTAGAGTAGAGCAGGTG 58.697 57.143 0.00 0.00 0.00 4.00
2642 3552 2.303175 GGAGTAGAGTAGAGCAGGTGG 58.697 57.143 0.00 0.00 0.00 4.61
2643 3553 2.357361 GGAGTAGAGTAGAGCAGGTGGT 60.357 54.545 0.00 0.00 0.00 4.16
2645 3555 3.878699 GAGTAGAGTAGAGCAGGTGGTAC 59.121 52.174 0.00 0.00 0.00 3.34
2646 3556 1.752683 AGAGTAGAGCAGGTGGTACG 58.247 55.000 0.00 0.00 0.00 3.67
2650 3560 1.132643 GTAGAGCAGGTGGTACGTGAG 59.867 57.143 0.00 0.00 36.17 3.51
2669 3579 1.340248 AGTGTTCCTGTGTCGTACTGG 59.660 52.381 10.57 10.57 46.60 4.00
2670 3580 0.677288 TGTTCCTGTGTCGTACTGGG 59.323 55.000 14.66 8.02 45.61 4.45
2672 3582 0.963962 TTCCTGTGTCGTACTGGGAC 59.036 55.000 14.66 0.00 45.61 4.46
2673 3583 0.896940 TCCTGTGTCGTACTGGGACC 60.897 60.000 14.66 0.00 45.61 4.46
2694 3605 6.039382 GGACCAAAATAAATAGAATGGCGAGT 59.961 38.462 0.00 0.00 0.00 4.18
2698 3609 7.220683 CCAAAATAAATAGAATGGCGAGTTGTG 59.779 37.037 0.00 0.00 0.00 3.33
2699 3610 6.377327 AATAAATAGAATGGCGAGTTGTGG 57.623 37.500 0.00 0.00 0.00 4.17
2700 3611 3.350219 AATAGAATGGCGAGTTGTGGT 57.650 42.857 0.00 0.00 0.00 4.16
2703 3614 1.608590 AGAATGGCGAGTTGTGGTTTG 59.391 47.619 0.00 0.00 0.00 2.93
2718 3630 4.141733 TGTGGTTTGAGTGAAGAGTGATGA 60.142 41.667 0.00 0.00 0.00 2.92
2725 3637 5.240891 TGAGTGAAGAGTGATGAATGGTTC 58.759 41.667 0.00 0.00 0.00 3.62
2726 3638 4.583871 AGTGAAGAGTGATGAATGGTTCC 58.416 43.478 0.00 0.00 0.00 3.62
2727 3639 4.288105 AGTGAAGAGTGATGAATGGTTCCT 59.712 41.667 0.00 0.00 0.00 3.36
2728 3640 4.633565 GTGAAGAGTGATGAATGGTTCCTC 59.366 45.833 0.00 0.00 0.00 3.71
2729 3641 4.533707 TGAAGAGTGATGAATGGTTCCTCT 59.466 41.667 0.00 0.00 0.00 3.69
2730 3642 5.013495 TGAAGAGTGATGAATGGTTCCTCTT 59.987 40.000 0.00 0.00 39.71 2.85
2731 3643 4.841422 AGAGTGATGAATGGTTCCTCTTG 58.159 43.478 0.00 0.00 0.00 3.02
2732 3644 4.288105 AGAGTGATGAATGGTTCCTCTTGT 59.712 41.667 0.00 0.00 0.00 3.16
2733 3645 4.330250 AGTGATGAATGGTTCCTCTTGTG 58.670 43.478 0.00 0.00 0.00 3.33
2734 3646 4.074970 GTGATGAATGGTTCCTCTTGTGT 58.925 43.478 0.00 0.00 0.00 3.72
2735 3647 5.013079 AGTGATGAATGGTTCCTCTTGTGTA 59.987 40.000 0.00 0.00 0.00 2.90
2736 3648 5.705441 GTGATGAATGGTTCCTCTTGTGTAA 59.295 40.000 0.00 0.00 0.00 2.41
2737 3649 6.206634 GTGATGAATGGTTCCTCTTGTGTAAA 59.793 38.462 0.00 0.00 0.00 2.01
2738 3650 6.947733 TGATGAATGGTTCCTCTTGTGTAAAT 59.052 34.615 0.00 0.00 0.00 1.40
2739 3651 7.451255 TGATGAATGGTTCCTCTTGTGTAAATT 59.549 33.333 0.00 0.00 0.00 1.82
2740 3652 7.214467 TGAATGGTTCCTCTTGTGTAAATTC 57.786 36.000 0.00 0.00 0.00 2.17
2741 3653 6.775142 TGAATGGTTCCTCTTGTGTAAATTCA 59.225 34.615 0.00 0.00 0.00 2.57
2742 3654 7.451255 TGAATGGTTCCTCTTGTGTAAATTCAT 59.549 33.333 0.00 0.00 0.00 2.57
2743 3655 8.877864 AATGGTTCCTCTTGTGTAAATTCATA 57.122 30.769 0.00 0.00 0.00 2.15
2744 3656 7.921786 TGGTTCCTCTTGTGTAAATTCATAG 57.078 36.000 0.00 0.00 0.00 2.23
2745 3657 6.374333 TGGTTCCTCTTGTGTAAATTCATAGC 59.626 38.462 0.00 0.00 0.00 2.97
2746 3658 6.374333 GGTTCCTCTTGTGTAAATTCATAGCA 59.626 38.462 0.00 0.00 0.00 3.49
2747 3659 7.067494 GGTTCCTCTTGTGTAAATTCATAGCAT 59.933 37.037 0.00 0.00 0.00 3.79
2806 3718 6.092670 CGTGAGAAAAAGCAAAGATATGAGGA 59.907 38.462 0.00 0.00 0.00 3.71
2866 3779 2.964464 TGCGGATTTGCATATTTGGGAT 59.036 40.909 0.00 0.00 40.62 3.85
2990 3908 8.730680 GCCAAAAAGAGATTCTTGTCATTACTA 58.269 33.333 0.00 0.00 36.71 1.82
3053 3971 2.030274 GGTCGTGCAAACTGGCTTTTAT 60.030 45.455 0.00 0.00 34.04 1.40
3174 4094 7.147794 TGGCTGCAAGATATGAAGATGAAAAAT 60.148 33.333 0.50 0.00 36.73 1.82
3335 4256 7.148306 GGTTCGAAAGGTGCTTTTTGATATAGA 60.148 37.037 0.00 0.00 33.49 1.98
3507 4430 1.136828 TCCCATAGATTGGTTCCCCG 58.863 55.000 0.00 0.00 44.83 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 857 0.970937 AGGATTGCCGAGAAGGACGA 60.971 55.000 0.00 0.00 45.00 4.20
267 937 0.999712 ACGTCCATCCCTTCCCAATT 59.000 50.000 0.00 0.00 0.00 2.32
268 938 0.546598 GACGTCCATCCCTTCCCAAT 59.453 55.000 3.51 0.00 0.00 3.16
269 939 1.895020 CGACGTCCATCCCTTCCCAA 61.895 60.000 10.58 0.00 0.00 4.12
270 940 2.355986 CGACGTCCATCCCTTCCCA 61.356 63.158 10.58 0.00 0.00 4.37
271 941 1.896122 AACGACGTCCATCCCTTCCC 61.896 60.000 10.58 0.00 0.00 3.97
272 942 0.036671 AAACGACGTCCATCCCTTCC 60.037 55.000 10.58 0.00 0.00 3.46
278 948 2.736682 CGCCCAAACGACGTCCATC 61.737 63.158 10.58 0.00 34.06 3.51
356 1034 0.999406 CGTCCGTGATGTGATTGGTC 59.001 55.000 0.00 0.00 0.00 4.02
439 1117 4.922719 ACGTCTGTAATTGCTAGCTACTC 58.077 43.478 17.23 3.48 0.00 2.59
442 1120 7.648112 CAGATAAACGTCTGTAATTGCTAGCTA 59.352 37.037 17.23 9.14 40.54 3.32
472 1156 0.249784 ATGCATCTGCGATCGCTTCT 60.250 50.000 37.01 20.15 45.83 2.85
602 1290 4.006989 CCTACCTCCTCATCTGACGATAG 58.993 52.174 0.00 0.00 46.19 2.08
622 1311 1.610673 AGATGCTCCCACGTGTCCT 60.611 57.895 15.65 0.00 0.00 3.85
714 1404 8.978874 ATTGGTGCATGTAGTTAAATGATAGA 57.021 30.769 0.00 0.00 0.00 1.98
721 1411 7.537715 CATCAAGATTGGTGCATGTAGTTAAA 58.462 34.615 0.00 0.00 31.79 1.52
850 1548 2.738139 CTGGCATGACACGTCGCA 60.738 61.111 0.00 0.00 0.00 5.10
882 1580 2.430465 GAGGAGCTTCACTGCATGAAA 58.570 47.619 0.00 0.00 46.80 2.69
906 1604 2.174360 CATGAGACCAGGAGAGACACA 58.826 52.381 0.00 0.00 0.00 3.72
909 1607 0.102120 CGCATGAGACCAGGAGAGAC 59.898 60.000 0.00 0.00 0.00 3.36
926 1624 1.475441 GATGTCTGTAGTGCGCTCGC 61.475 60.000 9.73 7.38 42.35 5.03
928 1626 1.923204 CTTGATGTCTGTAGTGCGCTC 59.077 52.381 9.73 4.74 0.00 5.03
929 1627 2.001812 CTTGATGTCTGTAGTGCGCT 57.998 50.000 9.73 4.58 0.00 5.92
930 1628 0.371645 GCTTGATGTCTGTAGTGCGC 59.628 55.000 0.00 0.00 0.00 6.09
933 1631 2.417933 GGCTTGCTTGATGTCTGTAGTG 59.582 50.000 0.00 0.00 0.00 2.74
934 1632 2.616510 GGGCTTGCTTGATGTCTGTAGT 60.617 50.000 0.00 0.00 0.00 2.73
936 1634 1.350684 TGGGCTTGCTTGATGTCTGTA 59.649 47.619 0.00 0.00 0.00 2.74
937 1635 0.111061 TGGGCTTGCTTGATGTCTGT 59.889 50.000 0.00 0.00 0.00 3.41
940 1657 1.509923 GCTGGGCTTGCTTGATGTC 59.490 57.895 0.00 0.00 0.00 3.06
944 1661 4.684134 GGGGCTGGGCTTGCTTGA 62.684 66.667 2.80 0.00 0.00 3.02
946 1663 4.238062 TTGGGGCTGGGCTTGCTT 62.238 61.111 2.80 0.00 0.00 3.91
947 1664 4.691359 CTTGGGGCTGGGCTTGCT 62.691 66.667 2.80 0.00 0.00 3.91
962 1679 3.332187 CTCCTTCCTTTCCTTCCTTCCTT 59.668 47.826 0.00 0.00 0.00 3.36
974 1691 1.268066 GTCGACCTCCTCCTTCCTTT 58.732 55.000 3.51 0.00 0.00 3.11
1101 1823 2.841988 GCCAGGAGGAGGAGCGAT 60.842 66.667 0.00 0.00 36.89 4.58
1526 2271 2.097825 ACTAGCAGGTGGGTACTTACG 58.902 52.381 0.00 0.00 0.00 3.18
1534 2279 0.107654 GGCAGTAACTAGCAGGTGGG 60.108 60.000 0.00 0.00 0.00 4.61
1545 2294 4.081642 TCACTCATCAAGGTAGGCAGTAAC 60.082 45.833 0.00 0.00 0.00 2.50
1563 2312 3.654414 CCCAAGTTACAGTGACTCACTC 58.346 50.000 8.85 0.00 43.43 3.51
1564 2313 2.224305 GCCCAAGTTACAGTGACTCACT 60.224 50.000 5.82 5.82 46.51 3.41
1565 2314 2.143925 GCCCAAGTTACAGTGACTCAC 58.856 52.381 0.00 0.38 34.10 3.51
1721 2500 0.514691 GCAGAGAAGCACAAGAACGG 59.485 55.000 0.00 0.00 0.00 4.44
1722 2501 1.506493 AGCAGAGAAGCACAAGAACG 58.494 50.000 0.00 0.00 36.85 3.95
1780 2642 1.595109 TTCACGTCCTGCAGCACAG 60.595 57.895 8.83 3.39 46.77 3.66
1904 2766 6.299805 TGTACATTGTAGAAGCTCATCCTT 57.700 37.500 0.00 0.00 0.00 3.36
1936 2806 4.418337 AAAAACAAGCGCACTGGC 57.582 50.000 11.47 0.00 0.00 4.85
1954 2824 3.203710 TGATACGGAGGGAGTAGAAAGGA 59.796 47.826 0.00 0.00 0.00 3.36
1963 2833 7.878127 ACAACAAATATTATGATACGGAGGGAG 59.122 37.037 0.00 0.00 0.00 4.30
1965 2835 7.979444 ACAACAAATATTATGATACGGAGGG 57.021 36.000 0.00 0.00 0.00 4.30
1981 2851 9.816354 AGTAATTGAACTGCTAAAACAACAAAT 57.184 25.926 0.00 0.00 0.00 2.32
1989 2859 9.654417 GTCGTTTTAGTAATTGAACTGCTAAAA 57.346 29.630 5.74 5.74 38.49 1.52
1990 2860 8.828644 TGTCGTTTTAGTAATTGAACTGCTAAA 58.171 29.630 0.00 0.00 32.07 1.85
1991 2861 8.367943 TGTCGTTTTAGTAATTGAACTGCTAA 57.632 30.769 0.00 0.00 0.00 3.09
1992 2862 7.949903 TGTCGTTTTAGTAATTGAACTGCTA 57.050 32.000 0.00 0.00 0.00 3.49
1993 2863 6.854496 TGTCGTTTTAGTAATTGAACTGCT 57.146 33.333 0.00 0.00 0.00 4.24
2008 2878 8.358148 CCTCTGTACCATAGTATATGTCGTTTT 58.642 37.037 0.00 0.00 0.00 2.43
2009 2879 7.722728 TCCTCTGTACCATAGTATATGTCGTTT 59.277 37.037 0.00 0.00 0.00 3.60
2010 2880 7.229308 TCCTCTGTACCATAGTATATGTCGTT 58.771 38.462 0.00 0.00 0.00 3.85
2011 2881 6.776744 TCCTCTGTACCATAGTATATGTCGT 58.223 40.000 0.00 0.00 0.00 4.34
2012 2882 6.879993 ACTCCTCTGTACCATAGTATATGTCG 59.120 42.308 0.00 0.00 0.00 4.35
2013 2883 9.165035 GTACTCCTCTGTACCATAGTATATGTC 57.835 40.741 0.00 0.00 37.43 3.06
2014 2884 8.892530 AGTACTCCTCTGTACCATAGTATATGT 58.107 37.037 0.00 0.00 42.58 2.29
2017 2887 9.612879 ACTAGTACTCCTCTGTACCATAGTATA 57.387 37.037 0.00 0.00 42.58 1.47
2018 2888 8.377034 CACTAGTACTCCTCTGTACCATAGTAT 58.623 40.741 0.00 0.00 42.58 2.12
2019 2889 7.346698 ACACTAGTACTCCTCTGTACCATAGTA 59.653 40.741 0.00 0.00 42.58 1.82
2020 2890 6.158344 ACACTAGTACTCCTCTGTACCATAGT 59.842 42.308 0.00 0.00 42.58 2.12
2021 2891 6.483974 CACACTAGTACTCCTCTGTACCATAG 59.516 46.154 0.00 0.00 42.58 2.23
2022 2892 6.354938 CACACTAGTACTCCTCTGTACCATA 58.645 44.000 0.00 0.00 42.58 2.74
2023 2893 5.194432 CACACTAGTACTCCTCTGTACCAT 58.806 45.833 0.00 0.00 42.58 3.55
2024 2894 4.586884 CACACTAGTACTCCTCTGTACCA 58.413 47.826 0.00 0.00 42.58 3.25
2025 2895 3.377798 GCACACTAGTACTCCTCTGTACC 59.622 52.174 0.00 0.00 42.58 3.34
2026 2896 4.008330 TGCACACTAGTACTCCTCTGTAC 58.992 47.826 0.00 0.00 42.09 2.90
2027 2897 4.019591 TCTGCACACTAGTACTCCTCTGTA 60.020 45.833 0.00 0.00 0.00 2.74
2028 2898 3.085533 CTGCACACTAGTACTCCTCTGT 58.914 50.000 0.00 0.00 0.00 3.41
2029 2899 3.127895 GTCTGCACACTAGTACTCCTCTG 59.872 52.174 0.00 0.00 0.00 3.35
2030 2900 3.349022 GTCTGCACACTAGTACTCCTCT 58.651 50.000 0.00 0.00 0.00 3.69
2031 2901 2.096174 CGTCTGCACACTAGTACTCCTC 59.904 54.545 0.00 0.00 0.00 3.71
2032 2902 2.085320 CGTCTGCACACTAGTACTCCT 58.915 52.381 0.00 0.00 0.00 3.69
2033 2903 1.811359 ACGTCTGCACACTAGTACTCC 59.189 52.381 0.00 0.00 0.00 3.85
2034 2904 2.483106 TCACGTCTGCACACTAGTACTC 59.517 50.000 0.00 0.00 0.00 2.59
2035 2905 2.484651 CTCACGTCTGCACACTAGTACT 59.515 50.000 0.00 0.00 0.00 2.73
2036 2906 2.852748 CTCACGTCTGCACACTAGTAC 58.147 52.381 0.00 0.00 0.00 2.73
2037 2907 1.199327 GCTCACGTCTGCACACTAGTA 59.801 52.381 0.00 0.00 0.00 1.82
2038 2908 0.039074 GCTCACGTCTGCACACTAGT 60.039 55.000 4.63 0.00 0.00 2.57
2039 2909 0.039165 TGCTCACGTCTGCACACTAG 60.039 55.000 7.78 0.00 33.94 2.57
2040 2910 0.603065 ATGCTCACGTCTGCACACTA 59.397 50.000 13.26 0.00 42.26 2.74
2041 2911 0.250038 AATGCTCACGTCTGCACACT 60.250 50.000 13.26 0.61 42.26 3.55
2042 2912 0.588252 AAATGCTCACGTCTGCACAC 59.412 50.000 13.26 0.00 42.26 3.82
2043 2913 1.002576 CAAAATGCTCACGTCTGCACA 60.003 47.619 13.26 0.00 42.26 4.57
2044 2914 1.264020 TCAAAATGCTCACGTCTGCAC 59.736 47.619 13.26 0.00 42.26 4.57
2045 2915 1.264020 GTCAAAATGCTCACGTCTGCA 59.736 47.619 13.34 13.34 43.67 4.41
2046 2916 1.722751 CGTCAAAATGCTCACGTCTGC 60.723 52.381 2.66 2.66 0.00 4.26
2047 2917 1.792367 TCGTCAAAATGCTCACGTCTG 59.208 47.619 0.00 0.00 33.89 3.51
2048 2918 1.792949 GTCGTCAAAATGCTCACGTCT 59.207 47.619 0.00 0.00 33.89 4.18
2049 2919 1.136336 GGTCGTCAAAATGCTCACGTC 60.136 52.381 0.00 0.00 33.89 4.34
2050 2920 0.865769 GGTCGTCAAAATGCTCACGT 59.134 50.000 0.00 0.00 33.89 4.49
2051 2921 0.179250 CGGTCGTCAAAATGCTCACG 60.179 55.000 0.00 0.00 0.00 4.35
2052 2922 1.144969 TCGGTCGTCAAAATGCTCAC 58.855 50.000 0.00 0.00 0.00 3.51
2055 2925 2.967362 TGTATCGGTCGTCAAAATGCT 58.033 42.857 0.00 0.00 0.00 3.79
2069 2942 5.056480 TGCAAGGATAAGGAACATGTATCG 58.944 41.667 0.00 0.00 0.00 2.92
2224 3103 0.336737 ATCGACCTCCACTCTCCCTT 59.663 55.000 0.00 0.00 0.00 3.95
2252 3131 1.267806 GTGCAACAACTCACATCCCTG 59.732 52.381 0.00 0.00 36.32 4.45
2267 3146 2.564771 CTTCTGTCTGAAGTGGTGCAA 58.435 47.619 10.51 0.00 45.26 4.08
2276 3155 5.723672 AATACCGAGAACTTCTGTCTGAA 57.276 39.130 0.00 0.00 0.00 3.02
2277 3156 5.010719 ACAAATACCGAGAACTTCTGTCTGA 59.989 40.000 0.00 0.00 0.00 3.27
2279 3158 5.010719 TCACAAATACCGAGAACTTCTGTCT 59.989 40.000 0.00 0.00 0.00 3.41
2282 3161 5.388475 CGTTCACAAATACCGAGAACTTCTG 60.388 44.000 0.00 0.00 37.14 3.02
2290 3191 1.127951 GCACCGTTCACAAATACCGAG 59.872 52.381 0.00 0.00 0.00 4.63
2294 3195 2.095263 AGCATGCACCGTTCACAAATAC 60.095 45.455 21.98 0.00 0.00 1.89
2295 3196 2.158559 AGCATGCACCGTTCACAAATA 58.841 42.857 21.98 0.00 0.00 1.40
2300 3201 0.179181 CATGAGCATGCACCGTTCAC 60.179 55.000 21.98 1.30 31.39 3.18
2301 3202 2.173433 CATGAGCATGCACCGTTCA 58.827 52.632 21.98 14.70 31.39 3.18
2349 3259 3.353836 CGCACCACCGGAAACAGG 61.354 66.667 9.46 4.13 0.00 4.00
2500 3410 0.315568 GAGCTCCGGCGATAGAACAT 59.684 55.000 9.30 0.00 44.37 2.71
2608 3518 0.108520 TACTCCCGTTTGATGTCCGC 60.109 55.000 0.00 0.00 0.00 5.54
2630 3540 1.132643 CTCACGTACCACCTGCTCTAC 59.867 57.143 0.00 0.00 0.00 2.59
2631 3541 1.271762 ACTCACGTACCACCTGCTCTA 60.272 52.381 0.00 0.00 0.00 2.43
2632 3542 0.539901 ACTCACGTACCACCTGCTCT 60.540 55.000 0.00 0.00 0.00 4.09
2633 3543 0.388649 CACTCACGTACCACCTGCTC 60.389 60.000 0.00 0.00 0.00 4.26
2635 3545 0.249741 AACACTCACGTACCACCTGC 60.250 55.000 0.00 0.00 0.00 4.85
2636 3546 1.604693 GGAACACTCACGTACCACCTG 60.605 57.143 0.00 0.00 0.00 4.00
2637 3547 0.677842 GGAACACTCACGTACCACCT 59.322 55.000 0.00 0.00 0.00 4.00
2639 3549 1.068127 ACAGGAACACTCACGTACCAC 59.932 52.381 0.00 0.00 0.00 4.16
2640 3550 1.067974 CACAGGAACACTCACGTACCA 59.932 52.381 0.00 0.00 0.00 3.25
2641 3551 1.068127 ACACAGGAACACTCACGTACC 59.932 52.381 0.00 0.00 0.00 3.34
2642 3552 2.391879 GACACAGGAACACTCACGTAC 58.608 52.381 0.00 0.00 0.00 3.67
2643 3553 1.002142 CGACACAGGAACACTCACGTA 60.002 52.381 0.00 0.00 0.00 3.57
2645 3555 0.248907 ACGACACAGGAACACTCACG 60.249 55.000 0.00 0.00 0.00 4.35
2646 3556 2.034305 AGTACGACACAGGAACACTCAC 59.966 50.000 0.00 0.00 0.00 3.51
2650 3560 1.604693 CCCAGTACGACACAGGAACAC 60.605 57.143 0.00 0.00 35.86 3.32
2657 3567 1.121378 TTTGGTCCCAGTACGACACA 58.879 50.000 0.00 0.00 31.55 3.72
2669 3579 6.039382 ACTCGCCATTCTATTTATTTTGGTCC 59.961 38.462 0.00 0.00 0.00 4.46
2670 3580 7.027778 ACTCGCCATTCTATTTATTTTGGTC 57.972 36.000 0.00 0.00 0.00 4.02
2672 3582 7.220683 CACAACTCGCCATTCTATTTATTTTGG 59.779 37.037 0.00 0.00 0.00 3.28
2673 3583 7.220683 CCACAACTCGCCATTCTATTTATTTTG 59.779 37.037 0.00 0.00 0.00 2.44
2694 3605 4.214986 TCACTCTTCACTCAAACCACAA 57.785 40.909 0.00 0.00 0.00 3.33
2698 3609 5.106396 CCATTCATCACTCTTCACTCAAACC 60.106 44.000 0.00 0.00 0.00 3.27
2699 3610 5.471456 ACCATTCATCACTCTTCACTCAAAC 59.529 40.000 0.00 0.00 0.00 2.93
2700 3611 5.624159 ACCATTCATCACTCTTCACTCAAA 58.376 37.500 0.00 0.00 0.00 2.69
2703 3614 4.633565 GGAACCATTCATCACTCTTCACTC 59.366 45.833 0.00 0.00 0.00 3.51
2718 3630 7.781324 ATGAATTTACACAAGAGGAACCATT 57.219 32.000 0.00 0.00 0.00 3.16
2725 3637 9.330063 TCTTATGCTATGAATTTACACAAGAGG 57.670 33.333 0.00 0.00 0.00 3.69
2737 3649 9.182214 ACAACTGTTTCATCTTATGCTATGAAT 57.818 29.630 0.00 0.00 40.71 2.57
2738 3650 8.565896 ACAACTGTTTCATCTTATGCTATGAA 57.434 30.769 0.00 0.00 39.66 2.57
2739 3651 9.317936 CTACAACTGTTTCATCTTATGCTATGA 57.682 33.333 0.00 0.00 0.00 2.15
2740 3652 9.317936 TCTACAACTGTTTCATCTTATGCTATG 57.682 33.333 0.00 0.00 0.00 2.23
2741 3653 9.890629 TTCTACAACTGTTTCATCTTATGCTAT 57.109 29.630 0.00 0.00 0.00 2.97
2742 3654 9.719355 TTTCTACAACTGTTTCATCTTATGCTA 57.281 29.630 0.00 0.00 0.00 3.49
2743 3655 8.621532 TTTCTACAACTGTTTCATCTTATGCT 57.378 30.769 0.00 0.00 0.00 3.79
2744 3656 9.846248 AATTTCTACAACTGTTTCATCTTATGC 57.154 29.630 0.00 0.00 0.00 3.14
2752 3664 7.542534 ACGTACAATTTCTACAACTGTTTCA 57.457 32.000 0.00 0.00 0.00 2.69
2785 3697 8.255905 CCAATTCCTCATATCTTTGCTTTTTCT 58.744 33.333 0.00 0.00 0.00 2.52
2806 3718 2.322355 CAGCGAGAGATGGTCCAATT 57.678 50.000 0.00 0.00 45.32 2.32
2866 3779 2.879026 CGGTCCTCTCAGAATATCACGA 59.121 50.000 0.00 0.00 0.00 4.35
2915 3833 3.509967 CCCCTCCGCAACTTTTCTAATTT 59.490 43.478 0.00 0.00 0.00 1.82
2996 3914 8.424918 CCAGTAGATCTCCTCTTGCTTTAATAA 58.575 37.037 0.00 0.00 35.28 1.40
3002 3920 3.718723 ACCAGTAGATCTCCTCTTGCTT 58.281 45.455 0.00 0.00 35.28 3.91
3053 3971 2.236146 AGGAAGTGTTGCGATCACCATA 59.764 45.455 0.00 0.00 36.58 2.74
3174 4094 3.225104 AGCGAAGTACCCCGTAATATGA 58.775 45.455 6.41 0.00 0.00 2.15
3335 4256 0.250597 ACCCGGCGCTTTTAAGTCTT 60.251 50.000 7.64 0.00 0.00 3.01
3395 4318 4.042560 CAGTCAGATCATCCCCCAACATAT 59.957 45.833 0.00 0.00 0.00 1.78
3507 4430 6.293698 TGGTCTAAACTGAGTTACCTTTTCC 58.706 40.000 14.79 5.85 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.