Multiple sequence alignment - TraesCS2A01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G282900 chr2A 100.000 3693 0 0 1 3693 474316315 474312623 0.000000e+00 6820.0
1 TraesCS2A01G282900 chr2A 100.000 2416 0 0 3933 6348 474312383 474309968 0.000000e+00 4462.0
2 TraesCS2A01G282900 chr2A 97.315 782 17 3 1 781 495899793 495899015 0.000000e+00 1325.0
3 TraesCS2A01G282900 chr2A 96.931 782 17 3 1 781 470345881 470345106 0.000000e+00 1304.0
4 TraesCS2A01G282900 chr2A 87.838 296 32 3 3321 3614 602800116 602800409 1.690000e-90 344.0
5 TraesCS2A01G282900 chr2A 98.000 150 3 0 2276 2425 474313597 474313448 1.760000e-65 261.0
6 TraesCS2A01G282900 chr2A 98.000 150 3 0 2719 2868 474314040 474313891 1.760000e-65 261.0
7 TraesCS2A01G282900 chr2A 96.040 101 2 1 2866 2964 474313740 474313640 5.090000e-36 163.0
8 TraesCS2A01G282900 chr2A 82.000 150 27 0 4438 4587 602800484 602800633 1.860000e-25 128.0
9 TraesCS2A01G282900 chr2A 94.118 51 3 0 211 261 574173964 574174014 1.900000e-10 78.7
10 TraesCS2A01G282900 chr2B 92.157 2448 102 34 3933 6348 421710180 421707791 0.000000e+00 3374.0
11 TraesCS2A01G282900 chr2B 92.358 1819 87 29 922 2718 421712666 421710878 0.000000e+00 2542.0
12 TraesCS2A01G282900 chr2B 97.073 615 17 1 3043 3657 421710892 421710279 0.000000e+00 1035.0
13 TraesCS2A01G282900 chr2B 87.500 296 33 3 3321 3614 541094904 541095197 7.880000e-89 339.0
14 TraesCS2A01G282900 chr2B 96.000 150 4 2 2719 2868 421711327 421711180 6.360000e-60 243.0
15 TraesCS2A01G282900 chr2B 98.020 101 0 1 2866 2964 421711029 421710929 2.350000e-39 174.0
16 TraesCS2A01G282900 chr2B 82.000 150 27 0 4438 4587 541095272 541095421 1.860000e-25 128.0
17 TraesCS2A01G282900 chr2B 82.963 135 17 6 1058 1189 541093581 541093712 4.020000e-22 117.0
18 TraesCS2A01G282900 chr2B 100.000 36 0 0 3658 3693 421710242 421710207 4.110000e-07 67.6
19 TraesCS2A01G282900 chr2B 94.444 36 2 0 2973 3008 421710896 421710861 8.890000e-04 56.5
20 TraesCS2A01G282900 chr2D 95.399 1717 43 16 4054 5746 354745567 354743863 0.000000e+00 2700.0
21 TraesCS2A01G282900 chr2D 94.129 1056 47 8 1673 2716 354747267 354746215 0.000000e+00 1592.0
22 TraesCS2A01G282900 chr2D 93.376 785 41 3 877 1650 354748046 354747262 0.000000e+00 1151.0
23 TraesCS2A01G282900 chr2D 93.689 618 27 2 3040 3657 354746230 354745625 0.000000e+00 915.0
24 TraesCS2A01G282900 chr2D 91.979 561 32 6 5788 6348 354743865 354743318 0.000000e+00 774.0
25 TraesCS2A01G282900 chr2D 87.838 296 32 3 3321 3614 459825818 459826111 1.690000e-90 344.0
26 TraesCS2A01G282900 chr2D 95.333 150 5 1 2719 2868 354746657 354746510 2.960000e-58 237.0
27 TraesCS2A01G282900 chr2D 81.579 190 21 8 3933 4122 182734776 182734601 1.840000e-30 145.0
28 TraesCS2A01G282900 chr2D 81.333 150 28 0 4438 4587 459826182 459826331 8.640000e-24 122.0
29 TraesCS2A01G282900 chr2D 98.148 54 0 1 794 847 354748102 354748050 6.780000e-15 93.5
30 TraesCS2A01G282900 chr5A 94.974 756 34 3 1 755 202429107 202428355 0.000000e+00 1182.0
31 TraesCS2A01G282900 chr3D 90.585 786 59 10 1 774 203510999 203511781 0.000000e+00 1027.0
32 TraesCS2A01G282900 chr3D 84.706 170 20 3 3960 4123 231161572 231161403 1.420000e-36 165.0
33 TraesCS2A01G282900 chr3A 86.224 196 22 2 3933 4123 298154819 298155014 2.320000e-49 207.0
34 TraesCS2A01G282900 chr3A 91.736 121 8 2 686 804 11567970 11567850 3.940000e-37 167.0
35 TraesCS2A01G282900 chr6B 90.625 128 9 3 680 804 713879500 713879627 3.940000e-37 167.0
36 TraesCS2A01G282900 chr6B 88.000 75 9 0 3933 4007 633540676 633540602 8.770000e-14 89.8
37 TraesCS2A01G282900 chr1A 92.373 118 7 2 690 805 253211652 253211769 3.940000e-37 167.0
38 TraesCS2A01G282900 chr1A 90.400 125 8 3 684 804 44347452 44347576 1.830000e-35 161.0
39 TraesCS2A01G282900 chr6A 90.400 125 9 3 682 804 31029406 31029283 1.830000e-35 161.0
40 TraesCS2A01G282900 chr4A 90.323 124 10 2 690 811 462074493 462074370 1.830000e-35 161.0
41 TraesCS2A01G282900 chr3B 84.431 167 19 4 3952 4111 283599211 283599045 2.370000e-34 158.0
42 TraesCS2A01G282900 chr3B 80.874 183 28 5 3942 4121 719776854 719777032 3.090000e-28 137.0
43 TraesCS2A01G282900 chr1B 81.461 178 27 4 3933 4104 548619228 548619051 2.390000e-29 141.0
44 TraesCS2A01G282900 chr1B 93.478 46 3 0 3933 3978 488397402 488397447 1.140000e-07 69.4
45 TraesCS2A01G282900 chr1D 86.517 89 9 3 4002 4089 276500800 276500886 1.880000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G282900 chr2A 474309968 474316315 6347 True 2393.400000 6820 98.408000 1 6348 5 chr2A.!!$R3 6347
1 TraesCS2A01G282900 chr2A 495899015 495899793 778 True 1325.000000 1325 97.315000 1 781 1 chr2A.!!$R2 780
2 TraesCS2A01G282900 chr2A 470345106 470345881 775 True 1304.000000 1304 96.931000 1 781 1 chr2A.!!$R1 780
3 TraesCS2A01G282900 chr2A 602800116 602800633 517 False 236.000000 344 84.919000 3321 4587 2 chr2A.!!$F2 1266
4 TraesCS2A01G282900 chr2B 421707791 421712666 4875 True 1070.300000 3374 95.721714 922 6348 7 chr2B.!!$R1 5426
5 TraesCS2A01G282900 chr2D 354743318 354748102 4784 True 1066.071429 2700 94.579000 794 6348 7 chr2D.!!$R2 5554
6 TraesCS2A01G282900 chr2D 459825818 459826331 513 False 233.000000 344 84.585500 3321 4587 2 chr2D.!!$F1 1266
7 TraesCS2A01G282900 chr5A 202428355 202429107 752 True 1182.000000 1182 94.974000 1 755 1 chr5A.!!$R1 754
8 TraesCS2A01G282900 chr3D 203510999 203511781 782 False 1027.000000 1027 90.585000 1 774 1 chr3D.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 710 0.419865 TAGGGATGGACTGGGGTGAA 59.580 55.000 0.00 0.0 0.00 3.18 F
866 880 0.524862 TAGGTTGACTCGGACGAAGC 59.475 55.000 0.00 0.0 0.00 3.86 F
1654 1683 0.035915 TAACTATGCAAGCACCCGCA 60.036 50.000 0.00 0.0 43.45 5.69 F
1657 1686 0.243365 CTATGCAAGCACCCGCAAAA 59.757 50.000 0.00 0.0 42.37 2.44 F
2836 2876 0.112995 TTCCCCAGAACTGCAGCAAT 59.887 50.000 15.27 0.0 0.00 3.56 F
2837 2877 0.112995 TCCCCAGAACTGCAGCAATT 59.887 50.000 15.27 0.0 0.00 2.32 F
3069 3109 0.704076 TTAATGCAGGGCAGAAGGGT 59.296 50.000 0.00 0.0 43.65 4.34 F
3071 3111 0.704076 AATGCAGGGCAGAAGGGTAA 59.296 50.000 0.00 0.0 43.65 2.85 F
3072 3112 0.929244 ATGCAGGGCAGAAGGGTAAT 59.071 50.000 0.00 0.0 43.65 1.89 F
5252 5347 1.077716 CCCCCGAGTGGTGAATTCC 60.078 63.158 2.27 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1639 0.036010 CAAGTCGGCTCTGGTTCCAT 60.036 55.000 0.00 0.00 0.00 3.41 R
2817 2857 0.112995 ATTGCTGCAGTTCTGGGGAA 59.887 50.000 16.64 0.00 0.00 3.97 R
2818 2858 0.112995 AATTGCTGCAGTTCTGGGGA 59.887 50.000 16.64 0.00 0.00 4.81 R
3050 3090 0.704076 ACCCTTCTGCCCTGCATTAA 59.296 50.000 0.00 0.00 38.13 1.40 R
4089 4165 1.617850 TCGTACACCGCCCTAGAAAAA 59.382 47.619 0.00 0.00 36.19 1.94 R
4397 4478 5.021033 TGTCCTCGTCTAAGTACTAGAGG 57.979 47.826 17.81 17.81 44.75 3.69 R
4858 4939 3.827008 ATCTACATGCATGGTCGTTCT 57.173 42.857 29.41 10.09 0.00 3.01 R
4860 4941 5.858381 AGAATATCTACATGCATGGTCGTT 58.142 37.500 29.41 15.82 0.00 3.85 R
5275 5376 6.160684 CGGATAACGTATTTCCATGTCCATA 58.839 40.000 10.77 0.00 37.93 2.74 R
6272 6386 1.002430 TGGCTTCAAGTGAGCAGGTAG 59.998 52.381 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 7.574967 CGGCATTTTAACTTTACATCAAGTCCT 60.575 37.037 0.00 0.00 35.87 3.85
172 173 7.900352 GCTGAAGTAACTGATATTCTTGTTTCG 59.100 37.037 0.00 0.00 0.00 3.46
543 549 3.081061 TCGGCATGCACTTTTCTTACAT 58.919 40.909 21.36 0.00 0.00 2.29
696 710 0.419865 TAGGGATGGACTGGGGTGAA 59.580 55.000 0.00 0.00 0.00 3.18
847 861 1.237285 GGATGCGCCACTTGTTGACT 61.237 55.000 4.18 0.00 36.34 3.41
848 862 1.438651 GATGCGCCACTTGTTGACTA 58.561 50.000 4.18 0.00 0.00 2.59
849 863 1.394917 GATGCGCCACTTGTTGACTAG 59.605 52.381 4.18 0.00 0.00 2.57
850 864 0.602638 TGCGCCACTTGTTGACTAGG 60.603 55.000 4.18 0.00 0.00 3.02
851 865 0.602905 GCGCCACTTGTTGACTAGGT 60.603 55.000 0.00 0.00 0.00 3.08
852 866 1.878953 CGCCACTTGTTGACTAGGTT 58.121 50.000 0.00 0.00 0.00 3.50
853 867 1.531149 CGCCACTTGTTGACTAGGTTG 59.469 52.381 0.00 0.00 0.00 3.77
854 868 2.805295 CGCCACTTGTTGACTAGGTTGA 60.805 50.000 0.00 0.00 0.00 3.18
855 869 2.548480 GCCACTTGTTGACTAGGTTGAC 59.452 50.000 0.00 0.00 0.00 3.18
856 870 3.744530 GCCACTTGTTGACTAGGTTGACT 60.745 47.826 0.00 0.00 0.00 3.41
857 871 4.058817 CCACTTGTTGACTAGGTTGACTC 58.941 47.826 0.00 0.00 0.00 3.36
858 872 3.736252 CACTTGTTGACTAGGTTGACTCG 59.264 47.826 0.00 0.00 0.00 4.18
859 873 3.243771 ACTTGTTGACTAGGTTGACTCGG 60.244 47.826 0.00 0.00 0.00 4.63
860 874 2.589720 TGTTGACTAGGTTGACTCGGA 58.410 47.619 0.00 0.00 0.00 4.55
861 875 2.295349 TGTTGACTAGGTTGACTCGGAC 59.705 50.000 0.00 0.00 0.00 4.79
862 876 1.162698 TGACTAGGTTGACTCGGACG 58.837 55.000 0.00 0.00 0.00 4.79
863 877 1.271001 TGACTAGGTTGACTCGGACGA 60.271 52.381 0.00 0.00 0.00 4.20
864 878 1.808945 GACTAGGTTGACTCGGACGAA 59.191 52.381 0.00 0.00 0.00 3.85
865 879 1.811359 ACTAGGTTGACTCGGACGAAG 59.189 52.381 0.00 0.00 0.00 3.79
866 880 0.524862 TAGGTTGACTCGGACGAAGC 59.475 55.000 0.00 0.00 0.00 3.86
867 881 1.737008 GGTTGACTCGGACGAAGCC 60.737 63.158 0.00 0.00 0.00 4.35
868 882 1.006571 GTTGACTCGGACGAAGCCA 60.007 57.895 0.00 0.00 0.00 4.75
869 883 1.006571 TTGACTCGGACGAAGCCAC 60.007 57.895 0.00 0.00 0.00 5.01
870 884 1.740332 TTGACTCGGACGAAGCCACA 61.740 55.000 0.00 0.00 0.00 4.17
871 885 1.733399 GACTCGGACGAAGCCACAC 60.733 63.158 0.00 0.00 0.00 3.82
872 886 2.432628 CTCGGACGAAGCCACACC 60.433 66.667 0.00 0.00 0.00 4.16
873 887 3.220999 CTCGGACGAAGCCACACCA 62.221 63.158 0.00 0.00 0.00 4.17
874 888 2.280524 CGGACGAAGCCACACCAA 60.281 61.111 0.00 0.00 0.00 3.67
875 889 2.604174 CGGACGAAGCCACACCAAC 61.604 63.158 0.00 0.00 0.00 3.77
876 890 2.258726 GGACGAAGCCACACCAACC 61.259 63.158 0.00 0.00 0.00 3.77
877 891 1.525077 GACGAAGCCACACCAACCA 60.525 57.895 0.00 0.00 0.00 3.67
878 892 1.782028 GACGAAGCCACACCAACCAC 61.782 60.000 0.00 0.00 0.00 4.16
879 893 1.821759 CGAAGCCACACCAACCACA 60.822 57.895 0.00 0.00 0.00 4.17
880 894 1.733526 GAAGCCACACCAACCACAC 59.266 57.895 0.00 0.00 0.00 3.82
881 895 1.000270 AAGCCACACCAACCACACA 60.000 52.632 0.00 0.00 0.00 3.72
882 896 1.319614 AAGCCACACCAACCACACAC 61.320 55.000 0.00 0.00 0.00 3.82
883 897 2.049185 GCCACACCAACCACACACA 61.049 57.895 0.00 0.00 0.00 3.72
884 898 1.806568 CCACACCAACCACACACAC 59.193 57.895 0.00 0.00 0.00 3.82
885 899 0.679640 CCACACCAACCACACACACT 60.680 55.000 0.00 0.00 0.00 3.55
886 900 1.173043 CACACCAACCACACACACTT 58.827 50.000 0.00 0.00 0.00 3.16
912 926 4.742649 TCTCGGCGCTCCAGTCCT 62.743 66.667 7.64 0.00 0.00 3.85
919 933 2.436824 GCTCCAGTCCTTTCCGCC 60.437 66.667 0.00 0.00 0.00 6.13
1190 1209 1.913951 ATCTGCTTCATGGGCGGTGA 61.914 55.000 16.07 10.30 37.35 4.02
1215 1234 2.750350 CTTTGCCCCCTCTCACGT 59.250 61.111 0.00 0.00 0.00 4.49
1259 1278 3.636043 CTGTGTTCGTGCGCGGTT 61.636 61.111 21.04 0.00 38.89 4.44
1280 1300 5.357596 GGTTGTTGTAGTAAAACCCTTGTGA 59.642 40.000 0.62 0.00 36.81 3.58
1368 1389 2.552599 TCTAACCAACCGTGCATTCA 57.447 45.000 0.00 0.00 0.00 2.57
1425 1446 6.869437 CCTCTTGGGAAGATGAGAATCACCT 61.869 48.000 0.00 0.00 44.85 4.00
1435 1456 5.919336 AGATGAGAATCACCTTCTCCATTGC 60.919 44.000 11.36 0.00 32.33 3.56
1445 1466 5.636543 CACCTTCTCCATTGCTGAAATTTTC 59.363 40.000 2.05 2.05 0.00 2.29
1494 1515 6.296662 CCATATATCACCCTTGATTACCAGCT 60.297 42.308 0.00 0.00 39.66 4.24
1634 1663 1.048601 ACCAGAGCCGACTTGAAGAA 58.951 50.000 0.00 0.00 0.00 2.52
1643 1672 4.811557 AGCCGACTTGAAGAATAACTATGC 59.188 41.667 0.00 0.00 0.00 3.14
1644 1673 4.570772 GCCGACTTGAAGAATAACTATGCA 59.429 41.667 0.00 0.00 0.00 3.96
1645 1674 5.064707 GCCGACTTGAAGAATAACTATGCAA 59.935 40.000 0.00 0.00 0.00 4.08
1646 1675 6.709643 CCGACTTGAAGAATAACTATGCAAG 58.290 40.000 0.00 0.00 37.85 4.01
1647 1676 6.188175 CGACTTGAAGAATAACTATGCAAGC 58.812 40.000 0.00 0.00 36.63 4.01
1648 1677 6.183360 CGACTTGAAGAATAACTATGCAAGCA 60.183 38.462 0.00 0.00 36.63 3.91
1649 1678 6.846350 ACTTGAAGAATAACTATGCAAGCAC 58.154 36.000 0.00 0.00 36.63 4.40
1650 1679 5.818136 TGAAGAATAACTATGCAAGCACC 57.182 39.130 0.00 0.00 0.00 5.01
1651 1680 4.640201 TGAAGAATAACTATGCAAGCACCC 59.360 41.667 0.00 0.00 0.00 4.61
1652 1681 3.206150 AGAATAACTATGCAAGCACCCG 58.794 45.455 0.00 0.00 0.00 5.28
1653 1682 1.308998 ATAACTATGCAAGCACCCGC 58.691 50.000 0.00 0.00 38.99 6.13
1654 1683 0.035915 TAACTATGCAAGCACCCGCA 60.036 50.000 0.00 0.00 43.45 5.69
1655 1684 0.893270 AACTATGCAAGCACCCGCAA 60.893 50.000 0.00 0.00 42.37 4.85
1656 1685 0.893270 ACTATGCAAGCACCCGCAAA 60.893 50.000 0.00 0.00 42.37 3.68
1657 1686 0.243365 CTATGCAAGCACCCGCAAAA 59.757 50.000 0.00 0.00 42.37 2.44
1658 1687 0.676184 TATGCAAGCACCCGCAAAAA 59.324 45.000 0.00 0.00 42.37 1.94
1659 1688 0.600782 ATGCAAGCACCCGCAAAAAG 60.601 50.000 0.00 0.00 42.37 2.27
1660 1689 1.067250 GCAAGCACCCGCAAAAAGA 59.933 52.632 0.00 0.00 42.27 2.52
1661 1690 0.529555 GCAAGCACCCGCAAAAAGAA 60.530 50.000 0.00 0.00 42.27 2.52
1662 1691 1.933247 CAAGCACCCGCAAAAAGAAA 58.067 45.000 0.00 0.00 42.27 2.52
1663 1692 2.275318 CAAGCACCCGCAAAAAGAAAA 58.725 42.857 0.00 0.00 42.27 2.29
1664 1693 2.675348 CAAGCACCCGCAAAAAGAAAAA 59.325 40.909 0.00 0.00 42.27 1.94
1699 1728 9.606631 AGAACCATTATAGCTCAGAAAGTTAAG 57.393 33.333 0.00 0.00 0.00 1.85
1761 1791 5.897050 TGCTTGTTTTGGTGTTTAACTAGG 58.103 37.500 0.00 0.00 0.00 3.02
1763 1793 6.153000 TGCTTGTTTTGGTGTTTAACTAGGAA 59.847 34.615 0.00 0.00 0.00 3.36
1765 1795 7.381408 GCTTGTTTTGGTGTTTAACTAGGAATC 59.619 37.037 0.00 0.00 0.00 2.52
1767 1797 8.161699 TGTTTTGGTGTTTAACTAGGAATCTC 57.838 34.615 0.00 0.00 0.00 2.75
1821 1854 8.883954 TGCTGAATTGTTTGATGAAATAAACA 57.116 26.923 0.00 0.00 42.96 2.83
1867 1901 4.870363 TGGCTTTTTGCATACTGAACTTC 58.130 39.130 0.00 0.00 45.15 3.01
1910 1944 4.020543 ACTTTTGGTGTTTGCTGAAGGTA 58.979 39.130 0.00 0.00 0.00 3.08
1911 1945 4.142249 ACTTTTGGTGTTTGCTGAAGGTAC 60.142 41.667 0.00 0.00 0.00 3.34
1927 1961 4.307032 AGGTACTTCATGCATTGGAGTT 57.693 40.909 13.20 0.00 41.80 3.01
2038 2072 2.766263 TGATCAAGGGCGTCTAATCACT 59.234 45.455 0.00 0.00 0.00 3.41
2050 2084 4.686091 CGTCTAATCACTGAAGCAGTTTCA 59.314 41.667 0.00 0.00 42.59 2.69
2570 2607 4.734398 TGGTGTTCAATTATGGGAATGC 57.266 40.909 0.00 0.00 0.00 3.56
2572 2609 4.715792 TGGTGTTCAATTATGGGAATGCAT 59.284 37.500 0.00 0.00 0.00 3.96
2690 2730 8.383318 TGGATAATGCAAGCTAAGATAGTTTC 57.617 34.615 0.00 0.00 0.00 2.78
2696 2736 4.572795 GCAAGCTAAGATAGTTTCCACTCC 59.427 45.833 0.00 0.00 34.06 3.85
2698 2738 5.606348 AGCTAAGATAGTTTCCACTCCAG 57.394 43.478 0.00 0.00 34.06 3.86
2700 2740 6.195700 AGCTAAGATAGTTTCCACTCCAGTA 58.804 40.000 0.00 0.00 34.06 2.74
2701 2741 6.097129 AGCTAAGATAGTTTCCACTCCAGTAC 59.903 42.308 0.00 0.00 34.06 2.73
2702 2742 6.097129 GCTAAGATAGTTTCCACTCCAGTACT 59.903 42.308 0.00 0.00 34.06 2.73
2703 2743 5.923733 AGATAGTTTCCACTCCAGTACTG 57.076 43.478 16.34 16.34 34.06 2.74
2705 2745 6.491383 AGATAGTTTCCACTCCAGTACTGTA 58.509 40.000 21.18 4.92 34.06 2.74
2706 2746 7.126733 AGATAGTTTCCACTCCAGTACTGTAT 58.873 38.462 21.18 8.32 34.06 2.29
2707 2747 8.280084 AGATAGTTTCCACTCCAGTACTGTATA 58.720 37.037 21.18 5.95 34.06 1.47
2708 2748 9.080097 GATAGTTTCCACTCCAGTACTGTATAT 57.920 37.037 21.18 1.47 34.06 0.86
2709 2749 7.349412 AGTTTCCACTCCAGTACTGTATATC 57.651 40.000 21.18 3.48 0.00 1.63
2710 2750 6.895756 AGTTTCCACTCCAGTACTGTATATCA 59.104 38.462 21.18 0.00 0.00 2.15
2711 2751 7.565398 AGTTTCCACTCCAGTACTGTATATCAT 59.435 37.037 21.18 0.00 0.00 2.45
2712 2752 8.857098 GTTTCCACTCCAGTACTGTATATCATA 58.143 37.037 21.18 0.00 0.00 2.15
2713 2753 9.429109 TTTCCACTCCAGTACTGTATATCATAA 57.571 33.333 21.18 4.43 0.00 1.90
2714 2754 9.601810 TTCCACTCCAGTACTGTATATCATAAT 57.398 33.333 21.18 0.00 0.00 1.28
2715 2755 9.025041 TCCACTCCAGTACTGTATATCATAATG 57.975 37.037 21.18 1.88 0.00 1.90
2716 2756 7.761704 CCACTCCAGTACTGTATATCATAATGC 59.238 40.741 21.18 0.00 0.00 3.56
2717 2757 8.306761 CACTCCAGTACTGTATATCATAATGCA 58.693 37.037 21.18 0.00 0.00 3.96
2718 2758 8.307483 ACTCCAGTACTGTATATCATAATGCAC 58.693 37.037 21.18 0.00 0.00 4.57
2719 2759 8.189119 TCCAGTACTGTATATCATAATGCACA 57.811 34.615 21.18 0.00 0.00 4.57
2720 2760 8.815912 TCCAGTACTGTATATCATAATGCACAT 58.184 33.333 21.18 0.00 0.00 3.21
2733 2773 8.322906 TCATAATGCACATAATAGGCTGTAAC 57.677 34.615 0.00 0.00 0.00 2.50
2734 2774 8.156820 TCATAATGCACATAATAGGCTGTAACT 58.843 33.333 0.00 0.00 0.00 2.24
2735 2775 6.867662 AATGCACATAATAGGCTGTAACTC 57.132 37.500 0.00 0.00 0.00 3.01
2736 2776 4.703897 TGCACATAATAGGCTGTAACTCC 58.296 43.478 0.00 0.00 0.00 3.85
2737 2777 4.408921 TGCACATAATAGGCTGTAACTCCT 59.591 41.667 0.00 0.00 36.51 3.69
2738 2778 5.104527 TGCACATAATAGGCTGTAACTCCTT 60.105 40.000 0.00 0.00 34.02 3.36
2739 2779 6.099125 TGCACATAATAGGCTGTAACTCCTTA 59.901 38.462 0.00 0.00 34.02 2.69
2740 2780 6.990349 GCACATAATAGGCTGTAACTCCTTAA 59.010 38.462 0.00 0.00 34.02 1.85
2741 2781 7.661847 GCACATAATAGGCTGTAACTCCTTAAT 59.338 37.037 0.00 0.00 34.02 1.40
2742 2782 9.561069 CACATAATAGGCTGTAACTCCTTAATT 57.439 33.333 0.00 0.00 34.02 1.40
2747 2787 9.528489 AATAGGCTGTAACTCCTTAATTTGAAA 57.472 29.630 0.00 0.00 34.02 2.69
2748 2788 7.215719 AGGCTGTAACTCCTTAATTTGAAAC 57.784 36.000 0.00 0.00 0.00 2.78
2749 2789 7.004691 AGGCTGTAACTCCTTAATTTGAAACT 58.995 34.615 0.00 0.00 0.00 2.66
2750 2790 7.040409 AGGCTGTAACTCCTTAATTTGAAACTG 60.040 37.037 0.00 0.00 0.00 3.16
2751 2791 7.040686 GGCTGTAACTCCTTAATTTGAAACTGA 60.041 37.037 0.00 0.00 0.00 3.41
2752 2792 8.349983 GCTGTAACTCCTTAATTTGAAACTGAA 58.650 33.333 0.00 0.00 0.00 3.02
2793 2833 6.701432 TCTTTCTACTAAAAGTTGCTACGC 57.299 37.500 0.00 0.00 37.49 4.42
2794 2834 6.218019 TCTTTCTACTAAAAGTTGCTACGCA 58.782 36.000 0.00 0.00 37.49 5.24
2795 2835 6.872020 TCTTTCTACTAAAAGTTGCTACGCAT 59.128 34.615 0.00 0.00 35.39 4.73
2796 2836 8.030692 TCTTTCTACTAAAAGTTGCTACGCATA 58.969 33.333 0.00 0.00 35.39 3.14
2797 2837 8.537049 TTTCTACTAAAAGTTGCTACGCATAA 57.463 30.769 0.00 0.00 38.76 1.90
2798 2838 7.751047 TCTACTAAAAGTTGCTACGCATAAG 57.249 36.000 0.00 0.00 38.76 1.73
2799 2839 5.796350 ACTAAAAGTTGCTACGCATAAGG 57.204 39.130 0.00 0.00 38.76 2.69
2800 2840 3.487563 AAAAGTTGCTACGCATAAGGC 57.512 42.857 0.00 0.00 38.76 4.35
2801 2841 2.107950 AAGTTGCTACGCATAAGGCA 57.892 45.000 0.00 0.00 45.17 4.75
2802 2842 2.332063 AGTTGCTACGCATAAGGCAT 57.668 45.000 0.00 0.00 45.17 4.40
2803 2843 2.643551 AGTTGCTACGCATAAGGCATT 58.356 42.857 0.00 0.00 45.17 3.56
2804 2844 3.804036 AGTTGCTACGCATAAGGCATTA 58.196 40.909 0.00 0.00 45.17 1.90
2805 2845 4.196193 AGTTGCTACGCATAAGGCATTAA 58.804 39.130 0.00 0.00 45.17 1.40
2806 2846 4.638421 AGTTGCTACGCATAAGGCATTAAA 59.362 37.500 0.00 0.00 45.17 1.52
2807 2847 5.124776 AGTTGCTACGCATAAGGCATTAAAA 59.875 36.000 0.00 0.00 45.17 1.52
2808 2848 5.568685 TGCTACGCATAAGGCATTAAAAA 57.431 34.783 0.00 0.00 45.17 1.94
2834 2874 3.249805 TTCCCCAGAACTGCAGCA 58.750 55.556 15.27 0.00 0.00 4.41
2835 2875 1.536180 TTCCCCAGAACTGCAGCAA 59.464 52.632 15.27 0.00 0.00 3.91
2836 2876 0.112995 TTCCCCAGAACTGCAGCAAT 59.887 50.000 15.27 0.00 0.00 3.56
2837 2877 0.112995 TCCCCAGAACTGCAGCAATT 59.887 50.000 15.27 0.00 0.00 2.32
2838 2878 0.971386 CCCCAGAACTGCAGCAATTT 59.029 50.000 15.27 0.00 0.00 1.82
2839 2879 2.170166 CCCCAGAACTGCAGCAATTTA 58.830 47.619 15.27 0.00 0.00 1.40
2840 2880 2.762327 CCCCAGAACTGCAGCAATTTAT 59.238 45.455 15.27 0.00 0.00 1.40
2841 2881 3.181483 CCCCAGAACTGCAGCAATTTATC 60.181 47.826 15.27 1.15 0.00 1.75
2842 2882 3.444742 CCCAGAACTGCAGCAATTTATCA 59.555 43.478 15.27 0.00 0.00 2.15
2843 2883 4.439700 CCCAGAACTGCAGCAATTTATCAG 60.440 45.833 15.27 0.00 0.00 2.90
2844 2884 4.157289 CCAGAACTGCAGCAATTTATCAGT 59.843 41.667 15.27 0.00 39.42 3.41
2845 2885 5.336213 CCAGAACTGCAGCAATTTATCAGTT 60.336 40.000 15.27 5.72 46.75 3.16
2847 2887 5.710513 AACTGCAGCAATTTATCAGTTCA 57.289 34.783 15.27 0.00 42.31 3.18
2848 2888 5.909621 ACTGCAGCAATTTATCAGTTCAT 57.090 34.783 15.27 0.00 34.69 2.57
2849 2889 6.276832 ACTGCAGCAATTTATCAGTTCATT 57.723 33.333 15.27 0.00 34.69 2.57
2850 2890 6.097356 ACTGCAGCAATTTATCAGTTCATTG 58.903 36.000 15.27 0.00 34.69 2.82
2851 2891 6.028146 TGCAGCAATTTATCAGTTCATTGT 57.972 33.333 0.00 0.00 0.00 2.71
2852 2892 6.457355 TGCAGCAATTTATCAGTTCATTGTT 58.543 32.000 0.00 0.00 0.00 2.83
2853 2893 6.930164 TGCAGCAATTTATCAGTTCATTGTTT 59.070 30.769 0.00 0.00 0.00 2.83
2854 2894 7.441760 TGCAGCAATTTATCAGTTCATTGTTTT 59.558 29.630 0.00 0.00 0.00 2.43
2855 2895 8.284693 GCAGCAATTTATCAGTTCATTGTTTTT 58.715 29.630 0.00 0.00 0.00 1.94
2893 2933 8.066612 GGATCCATCCTTAAAAATTGAACTGA 57.933 34.615 6.95 0.00 43.73 3.41
2894 2934 8.193438 GGATCCATCCTTAAAAATTGAACTGAG 58.807 37.037 6.95 0.00 43.73 3.35
2895 2935 8.884124 ATCCATCCTTAAAAATTGAACTGAGA 57.116 30.769 0.00 0.00 0.00 3.27
2896 2936 8.704849 TCCATCCTTAAAAATTGAACTGAGAA 57.295 30.769 0.00 0.00 0.00 2.87
2897 2937 8.576442 TCCATCCTTAAAAATTGAACTGAGAAC 58.424 33.333 0.00 0.00 0.00 3.01
2898 2938 8.579863 CCATCCTTAAAAATTGAACTGAGAACT 58.420 33.333 0.00 0.00 0.00 3.01
2899 2939 9.971922 CATCCTTAAAAATTGAACTGAGAACTT 57.028 29.630 0.00 0.00 0.00 2.66
2917 2957 8.950210 TGAGAACTTTAATCTCATTCATTGGAC 58.050 33.333 3.61 0.00 46.23 4.02
2918 2958 8.868522 AGAACTTTAATCTCATTCATTGGACA 57.131 30.769 0.00 0.00 0.00 4.02
2919 2959 9.471702 AGAACTTTAATCTCATTCATTGGACAT 57.528 29.630 0.00 0.00 0.00 3.06
2920 2960 9.512435 GAACTTTAATCTCATTCATTGGACATG 57.488 33.333 0.00 0.00 0.00 3.21
2921 2961 8.812513 ACTTTAATCTCATTCATTGGACATGA 57.187 30.769 0.00 0.00 0.00 3.07
2922 2962 9.417561 ACTTTAATCTCATTCATTGGACATGAT 57.582 29.630 0.00 0.00 0.00 2.45
2925 2965 9.636789 TTAATCTCATTCATTGGACATGATTCT 57.363 29.630 0.00 0.00 0.00 2.40
2926 2966 8.534954 AATCTCATTCATTGGACATGATTCTT 57.465 30.769 0.00 0.00 0.00 2.52
2927 2967 9.636789 AATCTCATTCATTGGACATGATTCTTA 57.363 29.630 0.00 0.00 0.00 2.10
2928 2968 8.442632 TCTCATTCATTGGACATGATTCTTAC 57.557 34.615 0.00 0.00 0.00 2.34
2929 2969 8.048514 TCTCATTCATTGGACATGATTCTTACA 58.951 33.333 0.00 0.00 0.00 2.41
2930 2970 8.578448 TCATTCATTGGACATGATTCTTACAA 57.422 30.769 0.00 0.00 0.00 2.41
2931 2971 9.192642 TCATTCATTGGACATGATTCTTACAAT 57.807 29.630 0.00 0.00 0.00 2.71
2932 2972 9.244799 CATTCATTGGACATGATTCTTACAATG 57.755 33.333 10.55 10.55 42.85 2.82
2933 2973 6.798482 TCATTGGACATGATTCTTACAATGC 58.202 36.000 11.56 0.00 41.85 3.56
2934 2974 6.377712 TCATTGGACATGATTCTTACAATGCA 59.622 34.615 11.56 0.00 41.85 3.96
2935 2975 6.587206 TTGGACATGATTCTTACAATGCAA 57.413 33.333 0.00 0.00 0.00 4.08
2936 2976 6.198650 TGGACATGATTCTTACAATGCAAG 57.801 37.500 0.00 0.00 0.00 4.01
2937 2977 5.711506 TGGACATGATTCTTACAATGCAAGT 59.288 36.000 0.00 0.00 0.00 3.16
2938 2978 6.209192 TGGACATGATTCTTACAATGCAAGTT 59.791 34.615 0.00 0.00 0.00 2.66
2939 2979 7.092716 GGACATGATTCTTACAATGCAAGTTT 58.907 34.615 0.00 0.00 0.00 2.66
2940 2980 7.599998 GGACATGATTCTTACAATGCAAGTTTT 59.400 33.333 0.00 0.00 0.00 2.43
2941 2981 8.891671 ACATGATTCTTACAATGCAAGTTTTT 57.108 26.923 0.00 0.00 0.00 1.94
2962 3002 4.935352 TTTGGGCATATTTGGATAGTGC 57.065 40.909 0.00 0.00 35.17 4.40
2963 3003 3.591695 TGGGCATATTTGGATAGTGCA 57.408 42.857 0.00 0.00 37.53 4.57
2964 3004 3.489355 TGGGCATATTTGGATAGTGCAG 58.511 45.455 0.00 0.00 37.53 4.41
2965 3005 3.117550 TGGGCATATTTGGATAGTGCAGT 60.118 43.478 0.00 0.00 37.53 4.40
2966 3006 3.254166 GGGCATATTTGGATAGTGCAGTG 59.746 47.826 3.69 0.00 37.53 3.66
2967 3007 4.136796 GGCATATTTGGATAGTGCAGTGA 58.863 43.478 3.69 0.00 37.53 3.41
2968 3008 4.763793 GGCATATTTGGATAGTGCAGTGAT 59.236 41.667 3.69 0.00 37.53 3.06
2969 3009 5.939883 GGCATATTTGGATAGTGCAGTGATA 59.060 40.000 3.69 0.00 37.53 2.15
2970 3010 6.430925 GGCATATTTGGATAGTGCAGTGATAA 59.569 38.462 3.69 0.00 37.53 1.75
2971 3011 7.040478 GGCATATTTGGATAGTGCAGTGATAAA 60.040 37.037 3.69 1.31 37.53 1.40
3005 3045 0.929244 ATGCAGGGCAGAAGGGTAAT 59.071 50.000 0.00 0.00 43.65 1.89
3006 3046 1.590591 TGCAGGGCAGAAGGGTAATA 58.409 50.000 0.00 0.00 33.32 0.98
3007 3047 1.919654 TGCAGGGCAGAAGGGTAATAA 59.080 47.619 0.00 0.00 33.32 1.40
3008 3048 2.513738 TGCAGGGCAGAAGGGTAATAAT 59.486 45.455 0.00 0.00 33.32 1.28
3009 3049 3.149981 GCAGGGCAGAAGGGTAATAATC 58.850 50.000 0.00 0.00 0.00 1.75
3010 3050 3.435026 GCAGGGCAGAAGGGTAATAATCA 60.435 47.826 0.00 0.00 0.00 2.57
3011 3051 4.751028 GCAGGGCAGAAGGGTAATAATCAT 60.751 45.833 0.00 0.00 0.00 2.45
3012 3052 4.763793 CAGGGCAGAAGGGTAATAATCATG 59.236 45.833 0.00 0.00 0.00 3.07
3013 3053 4.416848 AGGGCAGAAGGGTAATAATCATGT 59.583 41.667 0.00 0.00 0.00 3.21
3014 3054 4.762251 GGGCAGAAGGGTAATAATCATGTC 59.238 45.833 0.00 0.00 0.00 3.06
3015 3055 4.762251 GGCAGAAGGGTAATAATCATGTCC 59.238 45.833 0.00 0.00 0.00 4.02
3016 3056 5.376625 GCAGAAGGGTAATAATCATGTCCA 58.623 41.667 0.00 0.00 0.00 4.02
3017 3057 5.827797 GCAGAAGGGTAATAATCATGTCCAA 59.172 40.000 0.00 0.00 0.00 3.53
3018 3058 6.321181 GCAGAAGGGTAATAATCATGTCCAAA 59.679 38.462 0.00 0.00 0.00 3.28
3019 3059 7.014615 GCAGAAGGGTAATAATCATGTCCAAAT 59.985 37.037 0.00 0.00 0.00 2.32
3020 3060 9.573166 CAGAAGGGTAATAATCATGTCCAAATA 57.427 33.333 0.00 0.00 0.00 1.40
3023 3063 8.353423 AGGGTAATAATCATGTCCAAATATGC 57.647 34.615 0.00 0.00 0.00 3.14
3024 3064 7.397192 AGGGTAATAATCATGTCCAAATATGCC 59.603 37.037 0.00 0.00 0.00 4.40
3025 3065 7.363793 GGGTAATAATCATGTCCAAATATGCCC 60.364 40.741 0.00 0.00 0.00 5.36
3026 3066 7.178274 GGTAATAATCATGTCCAAATATGCCCA 59.822 37.037 0.00 0.00 0.00 5.36
3027 3067 7.615039 AATAATCATGTCCAAATATGCCCAA 57.385 32.000 0.00 0.00 0.00 4.12
3028 3068 7.801893 ATAATCATGTCCAAATATGCCCAAT 57.198 32.000 0.00 0.00 0.00 3.16
3029 3069 4.940905 TCATGTCCAAATATGCCCAATG 57.059 40.909 0.00 0.00 0.00 2.82
3030 3070 3.069872 TCATGTCCAAATATGCCCAATGC 59.930 43.478 0.00 0.00 41.77 3.56
3031 3071 1.761784 TGTCCAAATATGCCCAATGCC 59.238 47.619 0.00 0.00 40.16 4.40
3032 3072 1.070601 GTCCAAATATGCCCAATGCCC 59.929 52.381 0.00 0.00 40.16 5.36
3033 3073 1.129917 CCAAATATGCCCAATGCCCA 58.870 50.000 0.00 0.00 40.16 5.36
3034 3074 1.489649 CCAAATATGCCCAATGCCCAA 59.510 47.619 0.00 0.00 40.16 4.12
3035 3075 2.092538 CCAAATATGCCCAATGCCCAAA 60.093 45.455 0.00 0.00 40.16 3.28
3036 3076 3.618351 CAAATATGCCCAATGCCCAAAA 58.382 40.909 0.00 0.00 40.16 2.44
3037 3077 4.015084 CAAATATGCCCAATGCCCAAAAA 58.985 39.130 0.00 0.00 40.16 1.94
3060 3100 7.823745 AAAACTGTATATCCTTAATGCAGGG 57.176 36.000 0.00 0.00 40.24 4.45
3061 3101 4.911390 ACTGTATATCCTTAATGCAGGGC 58.089 43.478 0.00 0.00 40.24 5.19
3062 3102 4.350816 ACTGTATATCCTTAATGCAGGGCA 59.649 41.667 0.00 0.00 44.86 5.36
3063 3103 4.910195 TGTATATCCTTAATGCAGGGCAG 58.090 43.478 0.00 0.00 43.65 4.85
3064 3104 4.597075 TGTATATCCTTAATGCAGGGCAGA 59.403 41.667 0.00 0.00 43.65 4.26
3065 3105 4.729552 ATATCCTTAATGCAGGGCAGAA 57.270 40.909 0.00 0.00 43.65 3.02
3066 3106 2.425143 TCCTTAATGCAGGGCAGAAG 57.575 50.000 0.00 3.29 43.65 2.85
3067 3107 1.396653 CCTTAATGCAGGGCAGAAGG 58.603 55.000 15.89 15.89 43.85 3.46
3068 3108 1.396653 CTTAATGCAGGGCAGAAGGG 58.603 55.000 0.00 0.00 43.65 3.95
3069 3109 0.704076 TTAATGCAGGGCAGAAGGGT 59.296 50.000 0.00 0.00 43.65 4.34
3070 3110 1.590591 TAATGCAGGGCAGAAGGGTA 58.409 50.000 0.00 0.00 43.65 3.69
3071 3111 0.704076 AATGCAGGGCAGAAGGGTAA 59.296 50.000 0.00 0.00 43.65 2.85
3072 3112 0.929244 ATGCAGGGCAGAAGGGTAAT 59.071 50.000 0.00 0.00 43.65 1.89
3206 3246 7.935520 TGTGTGTTTAAGCAGACATTGATTTA 58.064 30.769 16.64 0.00 37.66 1.40
3417 3457 4.920640 AAAAGCTGCTATAGACGCTAGA 57.079 40.909 14.24 0.00 31.48 2.43
3507 3547 2.158696 AGCATTATGGAGAGTTCAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
3642 3682 4.055360 CCTGTGTTTGTTCGTCATACTCA 58.945 43.478 0.00 0.00 33.26 3.41
3989 4065 2.671351 CGCCATATTAGCCTACAGGTCG 60.671 54.545 0.00 0.00 37.57 4.79
4084 4160 5.021458 ACCTTCAATCTGCATCAAAATCCT 58.979 37.500 0.00 0.00 0.00 3.24
4089 4165 9.595823 CTTCAATCTGCATCAAAATCCTTAAAT 57.404 29.630 0.00 0.00 0.00 1.40
4177 4253 3.824133 TCCATTCTGGTATGCCAATGAG 58.176 45.455 14.20 6.43 45.51 2.90
4686 4767 9.784531 CATGATGGTAACTTCCTCTAATATTGT 57.215 33.333 0.00 0.00 39.92 2.71
4771 4852 5.918426 TCATGTTGTATACCGTGTTCCTA 57.082 39.130 0.00 0.00 0.00 2.94
4819 4900 5.703876 CAAGGACTTGTTTATTGAGAAGCC 58.296 41.667 3.93 0.00 35.92 4.35
4858 4939 3.448469 ACCGCAAAGGGGAAATCAA 57.552 47.368 7.14 0.00 46.96 2.57
4860 4941 1.203001 ACCGCAAAGGGGAAATCAAGA 60.203 47.619 7.14 0.00 46.96 3.02
5131 5225 1.434696 CCGAGCCATCAATGCCAAC 59.565 57.895 0.00 0.00 0.00 3.77
5252 5347 1.077716 CCCCCGAGTGGTGAATTCC 60.078 63.158 2.27 0.00 0.00 3.01
5255 5356 1.546773 CCCCGAGTGGTGAATTCCAAA 60.547 52.381 2.27 0.00 39.34 3.28
5486 5588 1.333258 GCAGAGCAATCGCGTTTATCC 60.333 52.381 5.77 0.00 45.49 2.59
5578 5680 2.508526 GTGTCAGCAAACCTGGATTCT 58.491 47.619 0.00 0.00 42.05 2.40
5647 5756 5.751243 ATGTTTCTCACCAGTGTTTGTAC 57.249 39.130 0.00 0.00 0.00 2.90
5648 5757 4.839121 TGTTTCTCACCAGTGTTTGTACT 58.161 39.130 0.00 0.00 0.00 2.73
5649 5758 5.250200 TGTTTCTCACCAGTGTTTGTACTT 58.750 37.500 0.00 0.00 0.00 2.24
5650 5759 5.708230 TGTTTCTCACCAGTGTTTGTACTTT 59.292 36.000 0.00 0.00 0.00 2.66
5651 5760 5.811399 TTCTCACCAGTGTTTGTACTTTG 57.189 39.130 0.00 0.00 0.00 2.77
5652 5761 4.839121 TCTCACCAGTGTTTGTACTTTGT 58.161 39.130 0.00 0.00 0.00 2.83
5653 5762 5.979993 TCTCACCAGTGTTTGTACTTTGTA 58.020 37.500 0.00 0.00 0.00 2.41
5726 5836 2.012673 GCAGGACTCGAGATTTGCATT 58.987 47.619 21.68 0.00 0.00 3.56
5851 5964 6.314400 TGTTCGCTATAGTGTTATGAAAACCC 59.686 38.462 12.89 0.00 0.00 4.11
5868 5981 2.711542 ACCCTGCTGTTACATTGTAGC 58.288 47.619 3.91 3.91 36.72 3.58
5877 5990 2.579207 TACATTGTAGCGCCTGTCTC 57.421 50.000 2.29 0.00 0.00 3.36
5880 5993 2.283298 CATTGTAGCGCCTGTCTCAAT 58.717 47.619 2.29 3.74 0.00 2.57
5905 6018 2.223805 GGAGCAATTTCTATTTGGGCCG 60.224 50.000 0.00 0.00 0.00 6.13
5919 6032 2.376109 TGGGCCGAAGTAACACAAAAA 58.624 42.857 0.00 0.00 0.00 1.94
5923 6036 3.978855 GGCCGAAGTAACACAAAAATGTC 59.021 43.478 0.00 0.00 30.55 3.06
5944 6057 3.513119 TCCTTCCTCTCATCAGTTCACAG 59.487 47.826 0.00 0.00 0.00 3.66
5947 6060 5.512060 CCTTCCTCTCATCAGTTCACAGAAA 60.512 44.000 0.00 0.00 0.00 2.52
5948 6061 5.144692 TCCTCTCATCAGTTCACAGAAAG 57.855 43.478 0.00 0.00 0.00 2.62
5949 6062 4.590647 TCCTCTCATCAGTTCACAGAAAGT 59.409 41.667 0.00 0.00 0.00 2.66
5950 6063 5.070981 TCCTCTCATCAGTTCACAGAAAGTT 59.929 40.000 0.00 0.00 0.00 2.66
5951 6064 5.407995 CCTCTCATCAGTTCACAGAAAGTTC 59.592 44.000 0.00 0.00 0.00 3.01
5952 6065 5.917462 TCTCATCAGTTCACAGAAAGTTCA 58.083 37.500 0.00 0.00 0.00 3.18
5953 6066 6.528321 TCTCATCAGTTCACAGAAAGTTCAT 58.472 36.000 0.00 0.00 0.00 2.57
5954 6067 7.670364 TCTCATCAGTTCACAGAAAGTTCATA 58.330 34.615 0.00 0.00 0.00 2.15
5955 6068 7.816513 TCTCATCAGTTCACAGAAAGTTCATAG 59.183 37.037 0.00 0.00 0.00 2.23
5956 6069 7.670364 TCATCAGTTCACAGAAAGTTCATAGA 58.330 34.615 0.00 0.00 0.00 1.98
5957 6070 8.316946 TCATCAGTTCACAGAAAGTTCATAGAT 58.683 33.333 0.00 0.00 0.00 1.98
5995 6108 3.006940 GGTATCTTTGTGTCGCATGGAA 58.993 45.455 0.00 0.00 0.00 3.53
6010 6123 3.367703 GCATGGAACCAATGAACTGGAAG 60.368 47.826 0.00 0.00 38.96 3.46
6038 6152 7.871973 CCAACACAATATTTCCATTTGAGACAA 59.128 33.333 0.00 0.00 0.00 3.18
6074 6188 2.781973 GCAAAACGTATAACAGGACGCG 60.782 50.000 3.53 3.53 42.81 6.01
6163 6277 1.318576 TATCTCTTCTCATGGCGCGA 58.681 50.000 12.10 0.00 0.00 5.87
6190 6304 1.963515 GCCTGGACCTGAACAACAATT 59.036 47.619 0.00 0.00 0.00 2.32
6272 6386 3.620488 TGATCATAGGAAAACAGGGTGC 58.380 45.455 0.00 0.00 0.00 5.01
6294 6408 1.572085 CCTGCTCACTTGAAGCCACG 61.572 60.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 6.255453 GCTTGCAAATGACTTGAACAAAACTA 59.745 34.615 0.00 0.00 37.17 2.24
172 173 2.726760 CGAAGTATAGGAATGCTGACGC 59.273 50.000 0.00 0.00 0.00 5.19
423 427 3.941483 ACGTTCCATTAAATCAGCTCCAG 59.059 43.478 0.00 0.00 0.00 3.86
543 549 1.140052 TGCTTTTCTGAGAACCACCGA 59.860 47.619 0.00 0.00 0.00 4.69
696 710 5.222337 ACCCTGGGTGAGAAATTGTTATTCT 60.222 40.000 19.82 0.00 39.76 2.40
847 861 0.524862 GCTTCGTCCGAGTCAACCTA 59.475 55.000 0.00 0.00 0.00 3.08
848 862 1.289380 GCTTCGTCCGAGTCAACCT 59.711 57.895 0.00 0.00 0.00 3.50
849 863 1.737008 GGCTTCGTCCGAGTCAACC 60.737 63.158 0.00 0.00 0.00 3.77
850 864 1.006571 TGGCTTCGTCCGAGTCAAC 60.007 57.895 0.00 0.00 0.00 3.18
851 865 1.006571 GTGGCTTCGTCCGAGTCAA 60.007 57.895 0.00 0.00 0.00 3.18
852 866 2.197605 TGTGGCTTCGTCCGAGTCA 61.198 57.895 0.00 0.00 0.00 3.41
853 867 1.733399 GTGTGGCTTCGTCCGAGTC 60.733 63.158 0.00 0.00 0.00 3.36
854 868 2.338984 GTGTGGCTTCGTCCGAGT 59.661 61.111 0.00 0.00 0.00 4.18
855 869 2.432628 GGTGTGGCTTCGTCCGAG 60.433 66.667 0.00 0.00 0.00 4.63
856 870 2.798364 TTGGTGTGGCTTCGTCCGA 61.798 57.895 0.00 0.00 0.00 4.55
857 871 2.280524 TTGGTGTGGCTTCGTCCG 60.281 61.111 0.00 0.00 0.00 4.79
858 872 2.258726 GGTTGGTGTGGCTTCGTCC 61.259 63.158 0.00 0.00 0.00 4.79
859 873 1.525077 TGGTTGGTGTGGCTTCGTC 60.525 57.895 0.00 0.00 0.00 4.20
860 874 1.822186 GTGGTTGGTGTGGCTTCGT 60.822 57.895 0.00 0.00 0.00 3.85
861 875 1.821759 TGTGGTTGGTGTGGCTTCG 60.822 57.895 0.00 0.00 0.00 3.79
862 876 1.034838 TGTGTGGTTGGTGTGGCTTC 61.035 55.000 0.00 0.00 0.00 3.86
863 877 1.000270 TGTGTGGTTGGTGTGGCTT 60.000 52.632 0.00 0.00 0.00 4.35
864 878 1.752694 GTGTGTGGTTGGTGTGGCT 60.753 57.895 0.00 0.00 0.00 4.75
865 879 2.049185 TGTGTGTGGTTGGTGTGGC 61.049 57.895 0.00 0.00 0.00 5.01
866 880 0.679640 AGTGTGTGTGGTTGGTGTGG 60.680 55.000 0.00 0.00 0.00 4.17
867 881 1.132262 GAAGTGTGTGTGGTTGGTGTG 59.868 52.381 0.00 0.00 0.00 3.82
868 882 1.004277 AGAAGTGTGTGTGGTTGGTGT 59.996 47.619 0.00 0.00 0.00 4.16
869 883 1.750193 AGAAGTGTGTGTGGTTGGTG 58.250 50.000 0.00 0.00 0.00 4.17
870 884 2.290641 TGAAGAAGTGTGTGTGGTTGGT 60.291 45.455 0.00 0.00 0.00 3.67
871 885 2.364632 TGAAGAAGTGTGTGTGGTTGG 58.635 47.619 0.00 0.00 0.00 3.77
872 886 3.427503 GGTTGAAGAAGTGTGTGTGGTTG 60.428 47.826 0.00 0.00 0.00 3.77
873 887 2.752903 GGTTGAAGAAGTGTGTGTGGTT 59.247 45.455 0.00 0.00 0.00 3.67
874 888 2.026262 AGGTTGAAGAAGTGTGTGTGGT 60.026 45.455 0.00 0.00 0.00 4.16
875 889 2.614057 GAGGTTGAAGAAGTGTGTGTGG 59.386 50.000 0.00 0.00 0.00 4.17
876 890 3.535561 AGAGGTTGAAGAAGTGTGTGTG 58.464 45.455 0.00 0.00 0.00 3.82
877 891 3.738281 CGAGAGGTTGAAGAAGTGTGTGT 60.738 47.826 0.00 0.00 0.00 3.72
878 892 2.797156 CGAGAGGTTGAAGAAGTGTGTG 59.203 50.000 0.00 0.00 0.00 3.82
879 893 3.099267 CGAGAGGTTGAAGAAGTGTGT 57.901 47.619 0.00 0.00 0.00 3.72
912 926 2.203938 AGGGGAGTGAGGCGGAAA 60.204 61.111 0.00 0.00 0.00 3.13
919 933 3.708220 GAAGCGCGAGGGGAGTGAG 62.708 68.421 12.10 0.00 0.00 3.51
1215 1234 3.882888 AGGAACAAAGAACATGCGAGAAA 59.117 39.130 0.00 0.00 0.00 2.52
1259 1278 5.127491 CCTCACAAGGGTTTTACTACAACA 58.873 41.667 0.00 0.00 39.21 3.33
1280 1300 6.270156 TCGTTCCAACAAAAACTTAAACCT 57.730 33.333 0.00 0.00 0.00 3.50
1368 1389 2.936498 CGTGAGTTGACTGGAACACTTT 59.064 45.455 0.00 0.00 0.00 2.66
1421 1442 4.796038 AATTTCAGCAATGGAGAAGGTG 57.204 40.909 0.00 0.00 0.00 4.00
1425 1446 5.011329 AGCAGAAAATTTCAGCAATGGAGAA 59.989 36.000 21.89 0.00 43.72 2.87
1427 1448 4.817517 AGCAGAAAATTTCAGCAATGGAG 58.182 39.130 21.89 0.00 43.72 3.86
1435 1456 5.443185 TTCCAGTGAGCAGAAAATTTCAG 57.557 39.130 8.55 0.88 0.00 3.02
1445 1466 0.906756 TCCCTCCTTCCAGTGAGCAG 60.907 60.000 0.00 0.00 0.00 4.24
1610 1639 0.036010 CAAGTCGGCTCTGGTTCCAT 60.036 55.000 0.00 0.00 0.00 3.41
1615 1644 1.048601 TTCTTCAAGTCGGCTCTGGT 58.951 50.000 0.00 0.00 0.00 4.00
1616 1645 2.393271 ATTCTTCAAGTCGGCTCTGG 57.607 50.000 0.00 0.00 0.00 3.86
1634 1663 1.308998 GCGGGTGCTTGCATAGTTAT 58.691 50.000 0.00 0.00 38.39 1.89
1643 1672 1.933247 TTTCTTTTTGCGGGTGCTTG 58.067 45.000 0.00 0.00 43.34 4.01
1644 1673 2.682155 TTTTCTTTTTGCGGGTGCTT 57.318 40.000 0.00 0.00 43.34 3.91
1645 1674 2.682155 TTTTTCTTTTTGCGGGTGCT 57.318 40.000 0.00 0.00 43.34 4.40
1668 1697 9.118300 CTTTCTGAGCTATAATGGTTCTTGAAT 57.882 33.333 0.00 0.00 0.00 2.57
1669 1698 8.103305 ACTTTCTGAGCTATAATGGTTCTTGAA 58.897 33.333 0.00 0.00 0.00 2.69
1670 1699 7.624549 ACTTTCTGAGCTATAATGGTTCTTGA 58.375 34.615 0.00 0.00 0.00 3.02
1671 1700 7.856145 ACTTTCTGAGCTATAATGGTTCTTG 57.144 36.000 0.00 0.00 0.00 3.02
1708 1737 5.321927 ACCCAGAACAAATACTCGGAAAAT 58.678 37.500 0.00 0.00 0.00 1.82
1728 1758 3.066380 CCAAAACAAGCAGCATTTACCC 58.934 45.455 0.00 0.00 0.00 3.69
1835 1869 8.190122 CAGTATGCAAAAAGCCATTACAATCTA 58.810 33.333 0.00 0.00 44.83 1.98
1841 1875 6.389906 AGTTCAGTATGCAAAAAGCCATTAC 58.610 36.000 0.00 0.00 44.83 1.89
1854 1888 2.237392 ACCCTGGAGAAGTTCAGTATGC 59.763 50.000 5.50 0.00 34.76 3.14
1867 1901 2.938956 ACTTTCACAGAACCCTGGAG 57.061 50.000 0.00 0.00 44.60 3.86
2038 2072 0.250295 CGGGGACTGAAACTGCTTCA 60.250 55.000 0.00 0.00 41.93 3.02
2050 2084 0.253044 CATCACCAATCACGGGGACT 59.747 55.000 0.00 0.00 42.71 3.85
2053 2087 0.464373 CTCCATCACCAATCACGGGG 60.464 60.000 0.00 0.00 0.00 5.73
2137 2171 3.361281 TCTTCAAGCATGATTCCAGCT 57.639 42.857 0.00 0.00 41.03 4.24
2554 2591 7.344093 TCCTACAAATGCATTCCCATAATTGAA 59.656 33.333 13.38 0.00 0.00 2.69
2671 2711 5.749462 AGTGGAAACTATCTTAGCTTGCAT 58.251 37.500 0.00 0.00 35.27 3.96
2690 2730 7.761704 GCATTATGATATACAGTACTGGAGTGG 59.238 40.741 26.12 0.74 32.13 4.00
2707 2747 8.950210 GTTACAGCCTATTATGTGCATTATGAT 58.050 33.333 0.00 0.00 0.00 2.45
2708 2748 8.156820 AGTTACAGCCTATTATGTGCATTATGA 58.843 33.333 0.00 0.00 0.00 2.15
2709 2749 8.327941 AGTTACAGCCTATTATGTGCATTATG 57.672 34.615 0.00 0.00 0.00 1.90
2710 2750 7.607991 GGAGTTACAGCCTATTATGTGCATTAT 59.392 37.037 0.00 0.00 0.00 1.28
2711 2751 6.934645 GGAGTTACAGCCTATTATGTGCATTA 59.065 38.462 0.00 0.00 0.00 1.90
2712 2752 5.765182 GGAGTTACAGCCTATTATGTGCATT 59.235 40.000 0.00 0.00 0.00 3.56
2713 2753 5.072329 AGGAGTTACAGCCTATTATGTGCAT 59.928 40.000 0.00 0.00 31.31 3.96
2714 2754 4.408921 AGGAGTTACAGCCTATTATGTGCA 59.591 41.667 0.00 0.00 31.31 4.57
2715 2755 4.962155 AGGAGTTACAGCCTATTATGTGC 58.038 43.478 0.00 0.00 31.31 4.57
2716 2756 9.561069 AATTAAGGAGTTACAGCCTATTATGTG 57.439 33.333 0.00 0.00 33.20 3.21
2721 2761 9.528489 TTTCAAATTAAGGAGTTACAGCCTATT 57.472 29.630 0.00 0.00 33.20 1.73
2722 2762 8.957466 GTTTCAAATTAAGGAGTTACAGCCTAT 58.043 33.333 0.00 0.00 33.20 2.57
2723 2763 8.161425 AGTTTCAAATTAAGGAGTTACAGCCTA 58.839 33.333 0.00 0.00 33.20 3.93
2724 2764 7.004691 AGTTTCAAATTAAGGAGTTACAGCCT 58.995 34.615 0.00 0.00 35.61 4.58
2725 2765 7.040686 TCAGTTTCAAATTAAGGAGTTACAGCC 60.041 37.037 0.00 0.00 0.00 4.85
2726 2766 7.871853 TCAGTTTCAAATTAAGGAGTTACAGC 58.128 34.615 0.00 0.00 0.00 4.40
2817 2857 0.112995 ATTGCTGCAGTTCTGGGGAA 59.887 50.000 16.64 0.00 0.00 3.97
2818 2858 0.112995 AATTGCTGCAGTTCTGGGGA 59.887 50.000 16.64 0.00 0.00 4.81
2819 2859 0.971386 AAATTGCTGCAGTTCTGGGG 59.029 50.000 16.64 0.00 0.00 4.96
2820 2860 3.444742 TGATAAATTGCTGCAGTTCTGGG 59.555 43.478 16.64 0.00 0.00 4.45
2821 2861 4.157289 ACTGATAAATTGCTGCAGTTCTGG 59.843 41.667 16.64 3.55 36.49 3.86
2822 2862 5.306532 ACTGATAAATTGCTGCAGTTCTG 57.693 39.130 16.64 5.89 36.49 3.02
2823 2863 5.972107 AACTGATAAATTGCTGCAGTTCT 57.028 34.783 16.64 2.06 43.95 3.01
2826 2866 5.909621 ATGAACTGATAAATTGCTGCAGT 57.090 34.783 16.64 0.00 41.19 4.40
2827 2867 6.097356 ACAATGAACTGATAAATTGCTGCAG 58.903 36.000 10.11 10.11 34.13 4.41
2828 2868 6.028146 ACAATGAACTGATAAATTGCTGCA 57.972 33.333 0.00 0.00 34.13 4.41
2829 2869 6.956299 AACAATGAACTGATAAATTGCTGC 57.044 33.333 0.00 0.00 34.13 5.25
2869 2909 8.960591 TCTCAGTTCAATTTTTAAGGATGGATC 58.039 33.333 0.00 0.00 0.00 3.36
2870 2910 8.884124 TCTCAGTTCAATTTTTAAGGATGGAT 57.116 30.769 0.00 0.00 0.00 3.41
2871 2911 8.576442 GTTCTCAGTTCAATTTTTAAGGATGGA 58.424 33.333 0.00 0.00 0.00 3.41
2872 2912 8.579863 AGTTCTCAGTTCAATTTTTAAGGATGG 58.420 33.333 0.00 0.00 0.00 3.51
2873 2913 9.971922 AAGTTCTCAGTTCAATTTTTAAGGATG 57.028 29.630 0.00 0.00 0.00 3.51
2892 2932 8.950210 TGTCCAATGAATGAGATTAAAGTTCTC 58.050 33.333 0.00 0.00 40.06 2.87
2893 2933 8.868522 TGTCCAATGAATGAGATTAAAGTTCT 57.131 30.769 0.00 0.00 0.00 3.01
2894 2934 9.512435 CATGTCCAATGAATGAGATTAAAGTTC 57.488 33.333 0.00 0.00 0.00 3.01
2895 2935 9.246670 TCATGTCCAATGAATGAGATTAAAGTT 57.753 29.630 0.00 0.00 0.00 2.66
2896 2936 8.812513 TCATGTCCAATGAATGAGATTAAAGT 57.187 30.769 0.00 0.00 0.00 2.66
2899 2939 9.636789 AGAATCATGTCCAATGAATGAGATTAA 57.363 29.630 0.00 0.00 34.02 1.40
2900 2940 9.636789 AAGAATCATGTCCAATGAATGAGATTA 57.363 29.630 0.00 0.00 34.02 1.75
2901 2941 8.534954 AAGAATCATGTCCAATGAATGAGATT 57.465 30.769 0.00 0.00 34.02 2.40
2902 2942 9.064706 GTAAGAATCATGTCCAATGAATGAGAT 57.935 33.333 0.00 0.00 34.02 2.75
2903 2943 8.048514 TGTAAGAATCATGTCCAATGAATGAGA 58.951 33.333 0.00 0.00 34.02 3.27
2904 2944 8.217131 TGTAAGAATCATGTCCAATGAATGAG 57.783 34.615 0.00 0.00 34.02 2.90
2905 2945 8.578448 TTGTAAGAATCATGTCCAATGAATGA 57.422 30.769 0.00 0.00 34.96 2.57
2906 2946 9.244799 CATTGTAAGAATCATGTCCAATGAATG 57.755 33.333 0.00 0.00 39.82 2.67
2907 2947 7.924412 GCATTGTAAGAATCATGTCCAATGAAT 59.076 33.333 12.22 0.00 39.82 2.57
2908 2948 7.093858 TGCATTGTAAGAATCATGTCCAATGAA 60.094 33.333 12.22 0.59 39.82 2.57
2909 2949 6.377712 TGCATTGTAAGAATCATGTCCAATGA 59.622 34.615 12.22 0.00 39.82 2.57
2910 2950 6.566141 TGCATTGTAAGAATCATGTCCAATG 58.434 36.000 0.00 0.00 40.19 2.82
2911 2951 6.778834 TGCATTGTAAGAATCATGTCCAAT 57.221 33.333 0.00 0.00 0.00 3.16
2912 2952 6.209192 ACTTGCATTGTAAGAATCATGTCCAA 59.791 34.615 19.57 0.00 0.00 3.53
2913 2953 5.711506 ACTTGCATTGTAAGAATCATGTCCA 59.288 36.000 19.57 0.00 0.00 4.02
2914 2954 6.199937 ACTTGCATTGTAAGAATCATGTCC 57.800 37.500 19.57 0.00 0.00 4.02
2915 2955 8.524870 AAAACTTGCATTGTAAGAATCATGTC 57.475 30.769 19.57 0.00 0.00 3.06
2916 2956 8.891671 AAAAACTTGCATTGTAAGAATCATGT 57.108 26.923 19.57 0.00 0.00 3.21
2939 2979 5.188555 TGCACTATCCAAATATGCCCAAAAA 59.811 36.000 0.00 0.00 35.37 1.94
2940 2980 4.713814 TGCACTATCCAAATATGCCCAAAA 59.286 37.500 0.00 0.00 35.37 2.44
2941 2981 4.285020 TGCACTATCCAAATATGCCCAAA 58.715 39.130 0.00 0.00 35.37 3.28
2942 2982 3.890756 CTGCACTATCCAAATATGCCCAA 59.109 43.478 0.00 0.00 35.37 4.12
2943 2983 3.117550 ACTGCACTATCCAAATATGCCCA 60.118 43.478 0.00 0.00 35.37 5.36
2944 2984 3.254166 CACTGCACTATCCAAATATGCCC 59.746 47.826 0.00 0.00 35.37 5.36
2945 2985 4.136796 TCACTGCACTATCCAAATATGCC 58.863 43.478 0.00 0.00 35.37 4.40
2946 2986 5.954296 ATCACTGCACTATCCAAATATGC 57.046 39.130 0.00 0.00 36.81 3.14
2950 2990 9.060347 CAGTATTTATCACTGCACTATCCAAAT 57.940 33.333 0.00 0.00 37.22 2.32
2951 2991 8.046708 ACAGTATTTATCACTGCACTATCCAAA 58.953 33.333 2.51 0.00 45.96 3.28
2952 2992 7.564793 ACAGTATTTATCACTGCACTATCCAA 58.435 34.615 2.51 0.00 45.96 3.53
2953 2993 7.124573 ACAGTATTTATCACTGCACTATCCA 57.875 36.000 2.51 0.00 45.96 3.41
2968 3008 9.613428 GCCCTGCATTATGATATACAGTATTTA 57.387 33.333 0.00 0.00 0.00 1.40
2969 3009 8.108999 TGCCCTGCATTATGATATACAGTATTT 58.891 33.333 0.00 0.00 31.71 1.40
2970 3010 7.632861 TGCCCTGCATTATGATATACAGTATT 58.367 34.615 0.00 0.00 31.71 1.89
2971 3011 7.126268 TCTGCCCTGCATTATGATATACAGTAT 59.874 37.037 0.00 0.00 38.13 2.12
3005 3045 6.518706 GCATTGGGCATATTTGGACATGATTA 60.519 38.462 0.00 0.00 43.97 1.75
3006 3046 5.743714 GCATTGGGCATATTTGGACATGATT 60.744 40.000 0.00 0.00 43.97 2.57
3007 3047 4.262721 GCATTGGGCATATTTGGACATGAT 60.263 41.667 0.00 0.00 43.97 2.45
3008 3048 3.069872 GCATTGGGCATATTTGGACATGA 59.930 43.478 0.00 0.00 43.97 3.07
3009 3049 3.395639 GCATTGGGCATATTTGGACATG 58.604 45.455 0.00 0.00 43.97 3.21
3010 3050 3.756933 GCATTGGGCATATTTGGACAT 57.243 42.857 0.00 0.00 43.97 3.06
3035 3075 7.201911 GCCCTGCATTAAGGATATACAGTTTTT 60.202 37.037 0.00 0.00 40.02 1.94
3036 3076 6.265422 GCCCTGCATTAAGGATATACAGTTTT 59.735 38.462 0.00 0.00 40.02 2.43
3037 3077 5.770162 GCCCTGCATTAAGGATATACAGTTT 59.230 40.000 0.00 0.00 40.02 2.66
3038 3078 5.163099 TGCCCTGCATTAAGGATATACAGTT 60.163 40.000 0.00 0.00 40.02 3.16
3039 3079 4.350816 TGCCCTGCATTAAGGATATACAGT 59.649 41.667 0.00 0.00 40.02 3.55
3040 3080 4.910195 TGCCCTGCATTAAGGATATACAG 58.090 43.478 0.00 0.00 40.02 2.74
3041 3081 4.597075 TCTGCCCTGCATTAAGGATATACA 59.403 41.667 0.00 0.00 40.02 2.29
3042 3082 5.165961 TCTGCCCTGCATTAAGGATATAC 57.834 43.478 0.00 0.00 40.02 1.47
3043 3083 5.280676 CCTTCTGCCCTGCATTAAGGATATA 60.281 44.000 18.45 0.00 45.93 0.86
3044 3084 4.508047 CCTTCTGCCCTGCATTAAGGATAT 60.508 45.833 18.45 0.00 45.93 1.63
3045 3085 3.181440 CCTTCTGCCCTGCATTAAGGATA 60.181 47.826 18.45 0.00 45.93 2.59
3046 3086 2.423947 CCTTCTGCCCTGCATTAAGGAT 60.424 50.000 18.45 0.00 45.93 3.24
3047 3087 1.064463 CCTTCTGCCCTGCATTAAGGA 60.064 52.381 18.45 0.00 45.93 3.36
3048 3088 1.396653 CCTTCTGCCCTGCATTAAGG 58.603 55.000 12.93 12.93 41.61 2.69
3049 3089 1.341383 ACCCTTCTGCCCTGCATTAAG 60.341 52.381 0.00 0.00 38.13 1.85
3050 3090 0.704076 ACCCTTCTGCCCTGCATTAA 59.296 50.000 0.00 0.00 38.13 1.40
3051 3091 1.590591 TACCCTTCTGCCCTGCATTA 58.409 50.000 0.00 0.00 38.13 1.90
3052 3092 0.704076 TTACCCTTCTGCCCTGCATT 59.296 50.000 0.00 0.00 38.13 3.56
3053 3093 0.929244 ATTACCCTTCTGCCCTGCAT 59.071 50.000 0.00 0.00 38.13 3.96
3054 3094 1.590591 TATTACCCTTCTGCCCTGCA 58.409 50.000 0.00 0.00 36.92 4.41
3055 3095 2.729028 TTATTACCCTTCTGCCCTGC 57.271 50.000 0.00 0.00 0.00 4.85
3056 3096 4.236527 ACTTTATTACCCTTCTGCCCTG 57.763 45.455 0.00 0.00 0.00 4.45
3057 3097 6.069029 ACATTACTTTATTACCCTTCTGCCCT 60.069 38.462 0.00 0.00 0.00 5.19
3058 3098 6.127101 ACATTACTTTATTACCCTTCTGCCC 58.873 40.000 0.00 0.00 0.00 5.36
3059 3099 7.640597 AACATTACTTTATTACCCTTCTGCC 57.359 36.000 0.00 0.00 0.00 4.85
3060 3100 9.353999 CAAAACATTACTTTATTACCCTTCTGC 57.646 33.333 0.00 0.00 0.00 4.26
3061 3101 9.855021 CCAAAACATTACTTTATTACCCTTCTG 57.145 33.333 0.00 0.00 0.00 3.02
3062 3102 9.816787 TCCAAAACATTACTTTATTACCCTTCT 57.183 29.630 0.00 0.00 0.00 2.85
3064 3104 9.596308 ACTCCAAAACATTACTTTATTACCCTT 57.404 29.630 0.00 0.00 0.00 3.95
3070 3110 9.297037 AGCACTACTCCAAAACATTACTTTATT 57.703 29.630 0.00 0.00 0.00 1.40
3071 3111 8.730680 CAGCACTACTCCAAAACATTACTTTAT 58.269 33.333 0.00 0.00 0.00 1.40
3072 3112 7.934665 TCAGCACTACTCCAAAACATTACTTTA 59.065 33.333 0.00 0.00 0.00 1.85
3093 3133 9.859427 CAAATATCTTACAAAAGGAAATCAGCA 57.141 29.630 0.00 0.00 33.22 4.41
3240 3280 7.475840 ACACAAGTCTTCTGTTCATCTTTTTC 58.524 34.615 0.00 0.00 0.00 2.29
3306 3346 7.014230 GGTGCCACCTTCAATATGTTATGTATT 59.986 37.037 6.63 0.00 34.73 1.89
3989 4065 9.309516 TGTATCCAAAATCTACTCAATACGTTC 57.690 33.333 0.00 0.00 0.00 3.95
4084 4160 5.122082 CGTACACCGCCCTAGAAAAATTTAA 59.878 40.000 0.00 0.00 0.00 1.52
4089 4165 1.617850 TCGTACACCGCCCTAGAAAAA 59.382 47.619 0.00 0.00 36.19 1.94
4177 4253 7.696992 TCTTGTTTGGGTATCCTAATCAAAC 57.303 36.000 9.45 9.45 44.10 2.93
4397 4478 5.021033 TGTCCTCGTCTAAGTACTAGAGG 57.979 47.826 17.81 17.81 44.75 3.69
4412 4493 6.378564 ACAGGGTATAATATCTGATGTCCTCG 59.621 42.308 0.00 0.00 0.00 4.63
4771 4852 8.306038 TGCACTTATGTTCTATGCAAAATTTCT 58.694 29.630 0.00 0.00 43.00 2.52
4858 4939 3.827008 ATCTACATGCATGGTCGTTCT 57.173 42.857 29.41 10.09 0.00 3.01
4860 4941 5.858381 AGAATATCTACATGCATGGTCGTT 58.142 37.500 29.41 15.82 0.00 3.85
5275 5376 6.160684 CGGATAACGTATTTCCATGTCCATA 58.839 40.000 10.77 0.00 37.93 2.74
5321 5423 2.094734 GGTTACCTGTAAAATGCCGACG 59.905 50.000 0.00 0.00 0.00 5.12
5486 5588 2.621338 TGCTAAAATCGTCTGCCTCAG 58.379 47.619 0.00 0.00 0.00 3.35
5578 5680 9.535878 GGTTTATTTTATTGAAAGTGACACCAA 57.464 29.630 0.84 0.00 0.00 3.67
5726 5836 5.083122 TCAGTTTAATGCTCCAAATTCCCA 58.917 37.500 0.00 0.00 0.00 4.37
5851 5964 1.062587 GGCGCTACAATGTAACAGCAG 59.937 52.381 7.64 2.06 33.55 4.24
5868 5981 1.869767 GCTCCATTATTGAGACAGGCG 59.130 52.381 0.00 0.00 31.26 5.52
5877 5990 7.172019 GCCCAAATAGAAATTGCTCCATTATTG 59.828 37.037 0.00 0.00 0.00 1.90
5880 5993 5.070313 GGCCCAAATAGAAATTGCTCCATTA 59.930 40.000 0.00 0.00 0.00 1.90
5905 6018 7.013369 AGAGGAAGGACATTTTTGTGTTACTTC 59.987 37.037 12.76 12.76 41.06 3.01
5919 6032 4.081198 GTGAACTGATGAGAGGAAGGACAT 60.081 45.833 0.00 0.00 0.00 3.06
5923 6036 3.513119 TCTGTGAACTGATGAGAGGAAGG 59.487 47.826 0.00 0.00 0.00 3.46
5944 6057 3.563390 GGCTGGAGCATCTATGAACTTTC 59.437 47.826 0.20 0.00 44.36 2.62
5947 6060 2.104451 CAGGCTGGAGCATCTATGAACT 59.896 50.000 6.61 0.00 44.36 3.01
5948 6061 2.492012 CAGGCTGGAGCATCTATGAAC 58.508 52.381 6.61 0.00 44.36 3.18
5949 6062 1.202734 GCAGGCTGGAGCATCTATGAA 60.203 52.381 17.64 0.00 44.36 2.57
5950 6063 0.395686 GCAGGCTGGAGCATCTATGA 59.604 55.000 17.64 0.00 44.36 2.15
5951 6064 0.108019 TGCAGGCTGGAGCATCTATG 59.892 55.000 17.64 0.00 44.36 2.23
5952 6065 0.397187 CTGCAGGCTGGAGCATCTAT 59.603 55.000 23.27 0.00 44.36 1.98
5953 6066 1.693152 CCTGCAGGCTGGAGCATCTA 61.693 60.000 28.41 0.00 44.36 1.98
5954 6067 2.590645 CTGCAGGCTGGAGCATCT 59.409 61.111 23.27 0.00 44.36 2.90
5955 6068 2.516460 CCTGCAGGCTGGAGCATC 60.516 66.667 28.41 5.56 44.36 3.91
5956 6069 4.124943 CCCTGCAGGCTGGAGCAT 62.125 66.667 28.41 0.00 44.36 3.79
5976 6089 3.006940 GGTTCCATGCGACACAAAGATA 58.993 45.455 0.00 0.00 0.00 1.98
5995 6108 3.222603 GTTGGTCTTCCAGTTCATTGGT 58.777 45.455 0.00 0.00 45.22 3.67
6010 6123 7.542130 GTCTCAAATGGAAATATTGTGTTGGTC 59.458 37.037 0.00 0.00 0.00 4.02
6038 6152 8.767478 ATACGTTTTGCTGTACTTGTAAGTAT 57.233 30.769 7.66 0.00 42.88 2.12
6074 6188 3.713826 TCCTTCCATCTTGTAACACCC 57.286 47.619 0.00 0.00 0.00 4.61
6163 6277 3.384168 TGTTCAGGTCCAGGCTGTATAT 58.616 45.455 14.43 0.00 0.00 0.86
6190 6304 7.862372 GCAGATGTTTTGTTTAATGAGACTTCA 59.138 33.333 0.00 0.00 37.81 3.02
6210 6324 4.375272 ACCTAGATGTCGATTTGCAGATG 58.625 43.478 0.00 0.00 0.00 2.90
6272 6386 1.002430 TGGCTTCAAGTGAGCAGGTAG 59.998 52.381 0.00 0.00 0.00 3.18
6294 6408 3.851098 TGTAAAAATTGGGCCAATACGC 58.149 40.909 30.89 18.76 32.43 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.