Multiple sequence alignment - TraesCS2A01G282400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G282400 chr2A 100.000 4555 0 0 1 4555 473406417 473410971 0.000000e+00 8412.0
1 TraesCS2A01G282400 chr2A 90.196 51 5 0 4074 4124 84958308 84958258 2.940000e-07 67.6
2 TraesCS2A01G282400 chr2D 97.613 2514 39 2 885 3398 354319484 354321976 0.000000e+00 4290.0
3 TraesCS2A01G282400 chr2D 95.908 953 23 7 3614 4555 354321975 354322922 0.000000e+00 1530.0
4 TraesCS2A01G282400 chr2D 94.977 219 11 0 3397 3615 204855801 204856019 1.210000e-90 344.0
5 TraesCS2A01G282400 chr2D 94.977 219 11 0 3397 3615 284559957 284560175 1.210000e-90 344.0
6 TraesCS2A01G282400 chr2B 97.444 2504 49 2 895 3398 421082258 421084746 0.000000e+00 4255.0
7 TraesCS2A01G282400 chr2B 95.864 943 26 4 3614 4555 421084745 421085675 0.000000e+00 1513.0
8 TraesCS2A01G282400 chr2B 80.471 297 32 10 1 293 421076662 421076936 2.150000e-48 204.0
9 TraesCS2A01G282400 chr1D 94.977 219 11 0 3397 3615 442835904 442835686 1.210000e-90 344.0
10 TraesCS2A01G282400 chr1D 97.561 41 1 0 4084 4124 454458761 454458801 2.270000e-08 71.3
11 TraesCS2A01G282400 chr6D 94.595 222 10 1 3394 3615 3331665 3331884 4.360000e-90 342.0
12 TraesCS2A01G282400 chr6D 94.595 222 10 1 3394 3615 3337545 3337764 4.360000e-90 342.0
13 TraesCS2A01G282400 chr3D 94.977 219 9 1 3397 3615 2719882 2720098 4.360000e-90 342.0
14 TraesCS2A01G282400 chr4D 93.833 227 13 1 3397 3622 446174074 446173848 1.570000e-89 340.0
15 TraesCS2A01G282400 chr7A 93.392 227 15 0 3397 3623 219906660 219906886 2.030000e-88 337.0
16 TraesCS2A01G282400 chr1A 93.013 229 16 0 3397 3625 553907115 553906887 7.300000e-88 335.0
17 TraesCS2A01G282400 chr5B 96.226 53 0 2 4073 4124 660860009 660860060 8.120000e-13 86.1
18 TraesCS2A01G282400 chr3B 83.333 90 12 3 462 549 758578978 758578890 3.780000e-11 80.5
19 TraesCS2A01G282400 chr7D 92.593 54 4 0 4071 4124 565183546 565183599 1.360000e-10 78.7
20 TraesCS2A01G282400 chr7B 92.593 54 4 0 4071 4124 615290493 615290546 1.360000e-10 78.7
21 TraesCS2A01G282400 chr5D 92.593 54 3 1 4071 4124 558907303 558907355 4.890000e-10 76.8
22 TraesCS2A01G282400 chr6B 90.385 52 3 2 4074 4124 678207635 678207685 2.940000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G282400 chr2A 473406417 473410971 4554 False 8412 8412 100.0000 1 4555 1 chr2A.!!$F1 4554
1 TraesCS2A01G282400 chr2D 354319484 354322922 3438 False 2910 4290 96.7605 885 4555 2 chr2D.!!$F3 3670
2 TraesCS2A01G282400 chr2B 421082258 421085675 3417 False 2884 4255 96.6540 895 4555 2 chr2B.!!$F2 3660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.179179 GCCATCGAAAAGTGCTCAGC 60.179 55.000 0.00 0.0 0.00 4.26 F
231 232 0.250727 AGTGTGTACATGTGGGTGCC 60.251 55.000 9.11 0.0 0.00 5.01 F
248 249 0.539986 GCCCCGACACTCCATTCTAA 59.460 55.000 0.00 0.0 0.00 2.10 F
354 355 0.725117 AAGAAAATAAGGCGGTCGCG 59.275 50.000 0.00 0.0 43.06 5.87 F
373 374 0.837272 GCCCTAGTGCTTCCCATGTA 59.163 55.000 0.00 0.0 0.00 2.29 F
374 375 1.421646 GCCCTAGTGCTTCCCATGTAT 59.578 52.381 0.00 0.0 0.00 2.29 F
2804 2811 1.070289 CCTTATGCTTCGTACCCTCCC 59.930 57.143 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1885 1.003108 GCAGCCTCTAACGCTTCTTC 58.997 55.000 0.00 0.0 33.17 2.87 R
2288 2289 0.524862 AGTTGCTACCACTACCGTCG 59.475 55.000 0.00 0.0 0.00 5.12 R
2292 2293 1.066358 GGGTGAGTTGCTACCACTACC 60.066 57.143 15.29 9.7 38.74 3.18 R
2294 2295 1.899814 CAGGGTGAGTTGCTACCACTA 59.100 52.381 15.29 0.0 38.74 2.74 R
2656 2663 2.496070 GCAGAGTGGTACATCTGTGGTA 59.504 50.000 17.93 0.0 44.52 3.25 R
2832 2839 2.203538 AGCAGTTTGGCCAGGTGG 60.204 61.111 5.11 0.0 38.53 4.61 R
4374 4396 0.465460 GCCCAATGAGCCGGTAATGA 60.465 55.000 1.90 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.130264 TGCCCAGAAGCACAATTGT 57.870 47.368 4.92 4.92 38.00 2.71
57 58 9.761504 AATAATTTTTGGAAAGCAATTTTTGGG 57.238 25.926 0.00 0.00 0.00 4.12
58 59 7.415592 AATTTTTGGAAAGCAATTTTTGGGA 57.584 28.000 0.00 0.00 0.00 4.37
59 60 5.826601 TTTTGGAAAGCAATTTTTGGGAC 57.173 34.783 0.00 0.00 0.00 4.46
60 61 4.494091 TTGGAAAGCAATTTTTGGGACA 57.506 36.364 0.00 0.00 0.00 4.02
61 62 3.802866 TGGAAAGCAATTTTTGGGACAC 58.197 40.909 0.00 0.00 39.29 3.67
62 63 3.198635 TGGAAAGCAATTTTTGGGACACA 59.801 39.130 0.00 0.00 39.29 3.72
63 64 3.559655 GGAAAGCAATTTTTGGGACACAC 59.440 43.478 0.00 0.00 39.29 3.82
64 65 3.902881 AAGCAATTTTTGGGACACACA 57.097 38.095 0.00 0.00 39.29 3.72
65 66 3.457610 AGCAATTTTTGGGACACACAG 57.542 42.857 0.00 0.00 39.29 3.66
66 67 2.765699 AGCAATTTTTGGGACACACAGT 59.234 40.909 0.00 0.00 39.29 3.55
67 68 3.197549 AGCAATTTTTGGGACACACAGTT 59.802 39.130 0.00 0.00 39.29 3.16
68 69 3.309410 GCAATTTTTGGGACACACAGTTG 59.691 43.478 0.00 0.00 39.29 3.16
69 70 4.502962 CAATTTTTGGGACACACAGTTGT 58.497 39.130 0.00 0.00 39.29 3.32
80 81 0.583438 CACAGTTGTGCTTCTCGTGG 59.417 55.000 0.00 0.00 39.39 4.94
81 82 0.464036 ACAGTTGTGCTTCTCGTGGA 59.536 50.000 0.00 0.00 0.00 4.02
82 83 1.134521 ACAGTTGTGCTTCTCGTGGAA 60.135 47.619 0.00 0.00 0.00 3.53
83 84 1.939934 CAGTTGTGCTTCTCGTGGAAA 59.060 47.619 0.00 0.00 33.07 3.13
84 85 2.549754 CAGTTGTGCTTCTCGTGGAAAT 59.450 45.455 0.00 0.00 33.07 2.17
85 86 3.745975 CAGTTGTGCTTCTCGTGGAAATA 59.254 43.478 0.00 0.00 33.07 1.40
86 87 3.746492 AGTTGTGCTTCTCGTGGAAATAC 59.254 43.478 0.00 0.00 33.07 1.89
87 88 3.394674 TGTGCTTCTCGTGGAAATACA 57.605 42.857 0.00 0.00 33.07 2.29
88 89 3.325870 TGTGCTTCTCGTGGAAATACAG 58.674 45.455 0.00 0.00 33.07 2.74
89 90 3.006430 TGTGCTTCTCGTGGAAATACAGA 59.994 43.478 0.00 0.00 33.07 3.41
90 91 4.184629 GTGCTTCTCGTGGAAATACAGAT 58.815 43.478 0.00 0.00 33.07 2.90
91 92 4.631813 GTGCTTCTCGTGGAAATACAGATT 59.368 41.667 0.00 0.00 33.07 2.40
92 93 4.631377 TGCTTCTCGTGGAAATACAGATTG 59.369 41.667 0.00 0.00 33.07 2.67
93 94 4.631813 GCTTCTCGTGGAAATACAGATTGT 59.368 41.667 0.00 0.00 33.07 2.71
94 95 5.446473 GCTTCTCGTGGAAATACAGATTGTG 60.446 44.000 0.00 0.00 33.07 3.33
95 96 3.932710 TCTCGTGGAAATACAGATTGTGC 59.067 43.478 0.00 0.00 0.00 4.57
96 97 3.935203 CTCGTGGAAATACAGATTGTGCT 59.065 43.478 0.00 0.00 0.00 4.40
97 98 4.323417 TCGTGGAAATACAGATTGTGCTT 58.677 39.130 0.00 0.00 0.00 3.91
98 99 4.759693 TCGTGGAAATACAGATTGTGCTTT 59.240 37.500 0.00 0.00 0.00 3.51
99 100 5.240623 TCGTGGAAATACAGATTGTGCTTTT 59.759 36.000 0.00 0.00 0.00 2.27
100 101 5.920273 CGTGGAAATACAGATTGTGCTTTTT 59.080 36.000 0.00 0.00 0.00 1.94
101 102 6.088085 CGTGGAAATACAGATTGTGCTTTTTC 59.912 38.462 0.00 0.00 0.00 2.29
102 103 6.366061 GTGGAAATACAGATTGTGCTTTTTCC 59.634 38.462 12.22 12.22 37.20 3.13
103 104 5.869344 GGAAATACAGATTGTGCTTTTTCCC 59.131 40.000 9.69 0.00 34.32 3.97
104 105 6.295292 GGAAATACAGATTGTGCTTTTTCCCT 60.295 38.462 9.69 0.00 34.32 4.20
105 106 6.670695 AATACAGATTGTGCTTTTTCCCTT 57.329 33.333 0.00 0.00 0.00 3.95
106 107 4.590850 ACAGATTGTGCTTTTTCCCTTC 57.409 40.909 0.00 0.00 0.00 3.46
107 108 4.218312 ACAGATTGTGCTTTTTCCCTTCT 58.782 39.130 0.00 0.00 0.00 2.85
108 109 4.279420 ACAGATTGTGCTTTTTCCCTTCTC 59.721 41.667 0.00 0.00 0.00 2.87
109 110 3.503748 AGATTGTGCTTTTTCCCTTCTCG 59.496 43.478 0.00 0.00 0.00 4.04
110 111 2.631160 TGTGCTTTTTCCCTTCTCGA 57.369 45.000 0.00 0.00 0.00 4.04
111 112 2.494059 TGTGCTTTTTCCCTTCTCGAG 58.506 47.619 5.93 5.93 0.00 4.04
112 113 2.104111 TGTGCTTTTTCCCTTCTCGAGA 59.896 45.455 12.08 12.08 0.00 4.04
113 114 3.139077 GTGCTTTTTCCCTTCTCGAGAA 58.861 45.455 25.57 25.57 0.00 2.87
114 115 3.753797 GTGCTTTTTCCCTTCTCGAGAAT 59.246 43.478 27.19 0.00 33.01 2.40
115 116 3.753272 TGCTTTTTCCCTTCTCGAGAATG 59.247 43.478 27.19 23.25 33.01 2.67
116 117 3.753797 GCTTTTTCCCTTCTCGAGAATGT 59.246 43.478 27.19 0.00 33.01 2.71
117 118 4.378874 GCTTTTTCCCTTCTCGAGAATGTG 60.379 45.833 27.19 17.82 33.01 3.21
118 119 2.386661 TTCCCTTCTCGAGAATGTGC 57.613 50.000 27.19 0.00 33.01 4.57
119 120 1.561643 TCCCTTCTCGAGAATGTGCT 58.438 50.000 27.19 0.00 33.01 4.40
120 121 1.902508 TCCCTTCTCGAGAATGTGCTT 59.097 47.619 27.19 0.00 33.01 3.91
121 122 2.093973 TCCCTTCTCGAGAATGTGCTTC 60.094 50.000 27.19 0.00 33.01 3.86
146 147 3.791973 TTTTCACGGAAGCACAATTGT 57.208 38.095 4.92 4.92 0.00 2.71
147 148 3.347958 TTTCACGGAAGCACAATTGTC 57.652 42.857 8.48 4.08 0.00 3.18
148 149 2.254546 TCACGGAAGCACAATTGTCT 57.745 45.000 8.48 6.43 0.00 3.41
149 150 1.872952 TCACGGAAGCACAATTGTCTG 59.127 47.619 8.48 5.21 0.00 3.51
150 151 1.603802 CACGGAAGCACAATTGTCTGT 59.396 47.619 8.48 5.89 0.00 3.41
151 152 2.033299 CACGGAAGCACAATTGTCTGTT 59.967 45.455 8.48 2.12 0.00 3.16
152 153 2.687935 ACGGAAGCACAATTGTCTGTTT 59.312 40.909 8.48 2.87 0.00 2.83
153 154 3.243068 ACGGAAGCACAATTGTCTGTTTC 60.243 43.478 8.48 11.89 0.00 2.78
154 155 3.642705 GGAAGCACAATTGTCTGTTTCC 58.357 45.455 21.03 21.03 32.04 3.13
155 156 3.552890 GGAAGCACAATTGTCTGTTTCCC 60.553 47.826 23.26 12.29 33.08 3.97
156 157 2.949447 AGCACAATTGTCTGTTTCCCT 58.051 42.857 8.48 0.00 0.00 4.20
157 158 3.299503 AGCACAATTGTCTGTTTCCCTT 58.700 40.909 8.48 0.00 0.00 3.95
158 159 3.319122 AGCACAATTGTCTGTTTCCCTTC 59.681 43.478 8.48 0.00 0.00 3.46
159 160 3.552890 GCACAATTGTCTGTTTCCCTTCC 60.553 47.826 8.48 0.00 0.00 3.46
160 161 3.891366 CACAATTGTCTGTTTCCCTTCCT 59.109 43.478 8.48 0.00 0.00 3.36
161 162 3.891366 ACAATTGTCTGTTTCCCTTCCTG 59.109 43.478 4.92 0.00 0.00 3.86
162 163 3.884037 ATTGTCTGTTTCCCTTCCTGT 57.116 42.857 0.00 0.00 0.00 4.00
163 164 3.662759 TTGTCTGTTTCCCTTCCTGTT 57.337 42.857 0.00 0.00 0.00 3.16
164 165 3.208747 TGTCTGTTTCCCTTCCTGTTC 57.791 47.619 0.00 0.00 0.00 3.18
165 166 2.507886 TGTCTGTTTCCCTTCCTGTTCA 59.492 45.455 0.00 0.00 0.00 3.18
166 167 3.053991 TGTCTGTTTCCCTTCCTGTTCAA 60.054 43.478 0.00 0.00 0.00 2.69
167 168 3.565902 GTCTGTTTCCCTTCCTGTTCAAG 59.434 47.826 0.00 0.00 0.00 3.02
168 169 3.202151 TCTGTTTCCCTTCCTGTTCAAGT 59.798 43.478 0.00 0.00 0.00 3.16
169 170 3.954258 CTGTTTCCCTTCCTGTTCAAGTT 59.046 43.478 0.00 0.00 0.00 2.66
170 171 3.699038 TGTTTCCCTTCCTGTTCAAGTTG 59.301 43.478 0.00 0.00 0.00 3.16
171 172 3.662759 TTCCCTTCCTGTTCAAGTTGT 57.337 42.857 2.11 0.00 0.00 3.32
172 173 3.662759 TCCCTTCCTGTTCAAGTTGTT 57.337 42.857 2.11 0.00 0.00 2.83
173 174 3.976015 TCCCTTCCTGTTCAAGTTGTTT 58.024 40.909 2.11 0.00 0.00 2.83
174 175 3.951680 TCCCTTCCTGTTCAAGTTGTTTC 59.048 43.478 2.11 0.00 0.00 2.78
175 176 3.954258 CCCTTCCTGTTCAAGTTGTTTCT 59.046 43.478 2.11 0.00 0.00 2.52
176 177 4.402474 CCCTTCCTGTTCAAGTTGTTTCTT 59.598 41.667 2.11 0.00 0.00 2.52
177 178 5.105351 CCCTTCCTGTTCAAGTTGTTTCTTT 60.105 40.000 2.11 0.00 0.00 2.52
178 179 6.398095 CCTTCCTGTTCAAGTTGTTTCTTTT 58.602 36.000 2.11 0.00 0.00 2.27
179 180 7.363443 CCCTTCCTGTTCAAGTTGTTTCTTTTA 60.363 37.037 2.11 0.00 0.00 1.52
180 181 7.702348 CCTTCCTGTTCAAGTTGTTTCTTTTAG 59.298 37.037 2.11 0.00 0.00 1.85
181 182 6.560711 TCCTGTTCAAGTTGTTTCTTTTAGC 58.439 36.000 2.11 0.00 0.00 3.09
182 183 5.748630 CCTGTTCAAGTTGTTTCTTTTAGCC 59.251 40.000 2.11 0.00 0.00 3.93
183 184 6.274157 TGTTCAAGTTGTTTCTTTTAGCCA 57.726 33.333 2.11 0.00 0.00 4.75
184 185 6.872920 TGTTCAAGTTGTTTCTTTTAGCCAT 58.127 32.000 2.11 0.00 0.00 4.40
185 186 6.978080 TGTTCAAGTTGTTTCTTTTAGCCATC 59.022 34.615 2.11 0.00 0.00 3.51
186 187 5.757886 TCAAGTTGTTTCTTTTAGCCATCG 58.242 37.500 2.11 0.00 0.00 3.84
187 188 5.529430 TCAAGTTGTTTCTTTTAGCCATCGA 59.471 36.000 2.11 0.00 0.00 3.59
188 189 6.038825 TCAAGTTGTTTCTTTTAGCCATCGAA 59.961 34.615 2.11 0.00 0.00 3.71
189 190 6.385649 AGTTGTTTCTTTTAGCCATCGAAA 57.614 33.333 0.00 0.00 0.00 3.46
190 191 6.801575 AGTTGTTTCTTTTAGCCATCGAAAA 58.198 32.000 0.00 0.00 0.00 2.29
191 192 6.918022 AGTTGTTTCTTTTAGCCATCGAAAAG 59.082 34.615 0.00 0.00 42.50 2.27
192 193 6.385649 TGTTTCTTTTAGCCATCGAAAAGT 57.614 33.333 5.25 0.00 42.09 2.66
193 194 6.205784 TGTTTCTTTTAGCCATCGAAAAGTG 58.794 36.000 5.25 0.00 42.09 3.16
194 195 4.419522 TCTTTTAGCCATCGAAAAGTGC 57.580 40.909 5.25 0.00 42.09 4.40
195 196 4.072131 TCTTTTAGCCATCGAAAAGTGCT 58.928 39.130 5.25 4.41 42.09 4.40
196 197 4.154195 TCTTTTAGCCATCGAAAAGTGCTC 59.846 41.667 5.25 0.00 42.09 4.26
197 198 2.760634 TAGCCATCGAAAAGTGCTCA 57.239 45.000 0.00 0.00 33.63 4.26
198 199 1.446907 AGCCATCGAAAAGTGCTCAG 58.553 50.000 0.00 0.00 0.00 3.35
199 200 0.179179 GCCATCGAAAAGTGCTCAGC 60.179 55.000 0.00 0.00 0.00 4.26
200 201 1.446907 CCATCGAAAAGTGCTCAGCT 58.553 50.000 0.00 0.00 0.00 4.24
201 202 1.396301 CCATCGAAAAGTGCTCAGCTC 59.604 52.381 0.00 0.00 0.00 4.09
202 203 2.071540 CATCGAAAAGTGCTCAGCTCA 58.928 47.619 0.00 0.00 0.00 4.26
203 204 1.502231 TCGAAAAGTGCTCAGCTCAC 58.498 50.000 0.00 0.00 34.80 3.51
204 205 1.069204 TCGAAAAGTGCTCAGCTCACT 59.931 47.619 0.00 0.83 45.83 3.41
205 206 2.296190 TCGAAAAGTGCTCAGCTCACTA 59.704 45.455 6.95 0.00 43.36 2.74
206 207 3.056536 TCGAAAAGTGCTCAGCTCACTAT 60.057 43.478 6.95 0.47 43.36 2.12
207 208 3.305629 CGAAAAGTGCTCAGCTCACTATC 59.694 47.826 6.95 7.91 43.36 2.08
208 209 3.969287 AAAGTGCTCAGCTCACTATCA 57.031 42.857 6.95 0.00 43.36 2.15
209 210 4.484537 AAAGTGCTCAGCTCACTATCAT 57.515 40.909 6.95 0.00 43.36 2.45
210 211 3.455990 AGTGCTCAGCTCACTATCATG 57.544 47.619 4.81 0.00 42.45 3.07
211 212 2.102757 AGTGCTCAGCTCACTATCATGG 59.897 50.000 4.81 0.00 42.45 3.66
212 213 2.102084 GTGCTCAGCTCACTATCATGGA 59.898 50.000 0.00 0.00 0.00 3.41
213 214 2.364647 TGCTCAGCTCACTATCATGGAG 59.635 50.000 0.00 0.00 0.00 3.86
214 215 2.364970 GCTCAGCTCACTATCATGGAGT 59.635 50.000 0.00 0.00 0.00 3.85
215 216 3.799574 GCTCAGCTCACTATCATGGAGTG 60.800 52.174 17.77 17.77 44.75 3.51
216 217 3.369175 TCAGCTCACTATCATGGAGTGT 58.631 45.455 21.05 6.54 43.95 3.55
217 218 3.131755 TCAGCTCACTATCATGGAGTGTG 59.868 47.826 21.05 19.78 43.95 3.82
218 219 3.102972 AGCTCACTATCATGGAGTGTGT 58.897 45.455 21.05 11.27 43.95 3.72
219 220 4.098501 CAGCTCACTATCATGGAGTGTGTA 59.901 45.833 21.05 7.89 43.95 2.90
220 221 4.098654 AGCTCACTATCATGGAGTGTGTAC 59.901 45.833 21.05 12.73 43.95 2.90
221 222 4.142160 GCTCACTATCATGGAGTGTGTACA 60.142 45.833 21.05 0.00 43.95 2.90
222 223 5.452496 GCTCACTATCATGGAGTGTGTACAT 60.452 44.000 21.05 0.00 43.95 2.29
223 224 5.906073 TCACTATCATGGAGTGTGTACATG 58.094 41.667 21.05 0.00 43.95 3.21
224 225 5.422012 TCACTATCATGGAGTGTGTACATGT 59.578 40.000 21.05 2.69 43.95 3.21
225 226 5.521372 CACTATCATGGAGTGTGTACATGTG 59.479 44.000 9.11 0.00 41.91 3.21
226 227 3.333029 TCATGGAGTGTGTACATGTGG 57.667 47.619 9.11 0.00 41.91 4.17
227 228 2.027285 TCATGGAGTGTGTACATGTGGG 60.027 50.000 9.11 0.00 41.91 4.61
228 229 1.429930 TGGAGTGTGTACATGTGGGT 58.570 50.000 9.11 0.00 0.00 4.51
229 230 1.071542 TGGAGTGTGTACATGTGGGTG 59.928 52.381 9.11 0.00 0.00 4.61
230 231 1.156736 GAGTGTGTACATGTGGGTGC 58.843 55.000 9.11 0.00 0.00 5.01
231 232 0.250727 AGTGTGTACATGTGGGTGCC 60.251 55.000 9.11 0.00 0.00 5.01
232 233 1.074072 TGTGTACATGTGGGTGCCC 59.926 57.895 9.11 0.00 0.00 5.36
233 234 1.677633 GTGTACATGTGGGTGCCCC 60.678 63.158 9.11 3.42 45.71 5.80
243 244 3.717294 GGTGCCCCGACACTCCAT 61.717 66.667 3.74 0.00 40.52 3.41
244 245 2.351276 GTGCCCCGACACTCCATT 59.649 61.111 0.00 0.00 37.58 3.16
245 246 1.745489 GTGCCCCGACACTCCATTC 60.745 63.158 0.00 0.00 37.58 2.67
246 247 1.918293 TGCCCCGACACTCCATTCT 60.918 57.895 0.00 0.00 0.00 2.40
247 248 0.616395 TGCCCCGACACTCCATTCTA 60.616 55.000 0.00 0.00 0.00 2.10
248 249 0.539986 GCCCCGACACTCCATTCTAA 59.460 55.000 0.00 0.00 0.00 2.10
249 250 1.065709 GCCCCGACACTCCATTCTAAA 60.066 52.381 0.00 0.00 0.00 1.85
250 251 2.421529 GCCCCGACACTCCATTCTAAAT 60.422 50.000 0.00 0.00 0.00 1.40
251 252 3.886123 CCCCGACACTCCATTCTAAATT 58.114 45.455 0.00 0.00 0.00 1.82
252 253 4.270008 CCCCGACACTCCATTCTAAATTT 58.730 43.478 0.00 0.00 0.00 1.82
253 254 5.433526 CCCCGACACTCCATTCTAAATTTA 58.566 41.667 0.00 0.00 0.00 1.40
254 255 5.883673 CCCCGACACTCCATTCTAAATTTAA 59.116 40.000 0.00 0.00 0.00 1.52
255 256 6.376018 CCCCGACACTCCATTCTAAATTTAAA 59.624 38.462 0.00 0.00 0.00 1.52
256 257 7.248437 CCCGACACTCCATTCTAAATTTAAAC 58.752 38.462 0.00 0.00 0.00 2.01
257 258 7.094549 CCCGACACTCCATTCTAAATTTAAACA 60.095 37.037 0.00 0.00 0.00 2.83
258 259 7.749126 CCGACACTCCATTCTAAATTTAAACAC 59.251 37.037 0.00 0.00 0.00 3.32
259 260 7.749126 CGACACTCCATTCTAAATTTAAACACC 59.251 37.037 0.00 0.00 0.00 4.16
260 261 7.892609 ACACTCCATTCTAAATTTAAACACCC 58.107 34.615 0.00 0.00 0.00 4.61
261 262 7.507616 ACACTCCATTCTAAATTTAAACACCCA 59.492 33.333 0.00 0.00 0.00 4.51
262 263 8.531146 CACTCCATTCTAAATTTAAACACCCAT 58.469 33.333 0.00 0.00 0.00 4.00
263 264 8.749354 ACTCCATTCTAAATTTAAACACCCATC 58.251 33.333 0.00 0.00 0.00 3.51
264 265 8.657387 TCCATTCTAAATTTAAACACCCATCA 57.343 30.769 0.00 0.00 0.00 3.07
265 266 9.265862 TCCATTCTAAATTTAAACACCCATCAT 57.734 29.630 0.00 0.00 0.00 2.45
306 307 9.774413 TTCCTCTTAAAGAAAATAAGAAGTCGT 57.226 29.630 0.00 0.00 38.53 4.34
307 308 9.204570 TCCTCTTAAAGAAAATAAGAAGTCGTG 57.795 33.333 0.00 0.00 38.53 4.35
308 309 8.989980 CCTCTTAAAGAAAATAAGAAGTCGTGT 58.010 33.333 0.00 0.00 38.53 4.49
323 324 8.928270 AGAAGTCGTGTTTTATTACTAGGATG 57.072 34.615 0.00 0.00 0.00 3.51
324 325 7.980099 AGAAGTCGTGTTTTATTACTAGGATGG 59.020 37.037 0.00 0.00 0.00 3.51
325 326 6.579865 AGTCGTGTTTTATTACTAGGATGGG 58.420 40.000 0.00 0.00 0.00 4.00
326 327 5.235831 GTCGTGTTTTATTACTAGGATGGGC 59.764 44.000 0.00 0.00 0.00 5.36
327 328 5.129815 TCGTGTTTTATTACTAGGATGGGCT 59.870 40.000 0.00 0.00 0.00 5.19
328 329 5.465724 CGTGTTTTATTACTAGGATGGGCTC 59.534 44.000 0.00 0.00 0.00 4.70
329 330 6.592870 GTGTTTTATTACTAGGATGGGCTCT 58.407 40.000 0.00 0.00 0.00 4.09
330 331 7.470981 CGTGTTTTATTACTAGGATGGGCTCTA 60.471 40.741 0.00 0.00 0.00 2.43
331 332 7.656542 GTGTTTTATTACTAGGATGGGCTCTAC 59.343 40.741 0.00 0.00 0.00 2.59
332 333 7.567622 TGTTTTATTACTAGGATGGGCTCTACT 59.432 37.037 0.00 0.00 0.00 2.57
333 334 8.430431 GTTTTATTACTAGGATGGGCTCTACTT 58.570 37.037 0.00 0.00 0.00 2.24
334 335 9.664777 TTTTATTACTAGGATGGGCTCTACTTA 57.335 33.333 0.00 0.00 0.00 2.24
335 336 9.664777 TTTATTACTAGGATGGGCTCTACTTAA 57.335 33.333 0.00 0.00 0.00 1.85
336 337 9.664777 TTATTACTAGGATGGGCTCTACTTAAA 57.335 33.333 0.00 0.00 0.00 1.52
337 338 7.598759 TTACTAGGATGGGCTCTACTTAAAG 57.401 40.000 0.00 0.00 0.00 1.85
338 339 5.778542 ACTAGGATGGGCTCTACTTAAAGA 58.221 41.667 0.00 0.00 0.00 2.52
339 340 6.203072 ACTAGGATGGGCTCTACTTAAAGAA 58.797 40.000 0.00 0.00 0.00 2.52
340 341 6.672657 ACTAGGATGGGCTCTACTTAAAGAAA 59.327 38.462 0.00 0.00 0.00 2.52
341 342 6.388619 AGGATGGGCTCTACTTAAAGAAAA 57.611 37.500 0.00 0.00 0.00 2.29
342 343 6.974795 AGGATGGGCTCTACTTAAAGAAAAT 58.025 36.000 0.00 0.00 0.00 1.82
343 344 8.102484 AGGATGGGCTCTACTTAAAGAAAATA 57.898 34.615 0.00 0.00 0.00 1.40
344 345 8.557450 AGGATGGGCTCTACTTAAAGAAAATAA 58.443 33.333 0.00 0.00 0.00 1.40
345 346 8.841300 GGATGGGCTCTACTTAAAGAAAATAAG 58.159 37.037 0.00 0.00 36.62 1.73
346 347 8.753497 ATGGGCTCTACTTAAAGAAAATAAGG 57.247 34.615 0.00 0.00 35.20 2.69
347 348 6.602009 TGGGCTCTACTTAAAGAAAATAAGGC 59.398 38.462 0.00 0.00 35.20 4.35
348 349 6.238402 GGGCTCTACTTAAAGAAAATAAGGCG 60.238 42.308 0.00 0.00 35.20 5.52
349 350 6.238402 GGCTCTACTTAAAGAAAATAAGGCGG 60.238 42.308 0.00 0.00 35.20 6.13
350 351 6.315642 GCTCTACTTAAAGAAAATAAGGCGGT 59.684 38.462 0.00 0.00 35.20 5.68
351 352 7.465647 GCTCTACTTAAAGAAAATAAGGCGGTC 60.466 40.741 0.00 0.00 35.20 4.79
352 353 5.541098 ACTTAAAGAAAATAAGGCGGTCG 57.459 39.130 0.00 0.00 35.20 4.79
353 354 2.913777 AAAGAAAATAAGGCGGTCGC 57.086 45.000 6.83 6.83 41.06 5.19
354 355 0.725117 AAGAAAATAAGGCGGTCGCG 59.275 50.000 0.00 0.00 43.06 5.87
355 356 1.297378 GAAAATAAGGCGGTCGCGC 60.297 57.895 0.00 0.00 43.06 6.86
369 370 4.096003 GCGCCCTAGTGCTTCCCA 62.096 66.667 0.00 0.00 46.32 4.37
370 371 2.911143 CGCCCTAGTGCTTCCCAT 59.089 61.111 0.00 0.00 0.00 4.00
371 372 1.524621 CGCCCTAGTGCTTCCCATG 60.525 63.158 0.00 0.00 0.00 3.66
372 373 1.609783 GCCCTAGTGCTTCCCATGT 59.390 57.895 0.00 0.00 0.00 3.21
373 374 0.837272 GCCCTAGTGCTTCCCATGTA 59.163 55.000 0.00 0.00 0.00 2.29
374 375 1.421646 GCCCTAGTGCTTCCCATGTAT 59.578 52.381 0.00 0.00 0.00 2.29
375 376 2.637872 GCCCTAGTGCTTCCCATGTATA 59.362 50.000 0.00 0.00 0.00 1.47
376 377 3.264450 GCCCTAGTGCTTCCCATGTATAT 59.736 47.826 0.00 0.00 0.00 0.86
377 378 4.469945 GCCCTAGTGCTTCCCATGTATATA 59.530 45.833 0.00 0.00 0.00 0.86
378 379 5.045869 GCCCTAGTGCTTCCCATGTATATAA 60.046 44.000 0.00 0.00 0.00 0.98
379 380 6.644347 CCCTAGTGCTTCCCATGTATATAAG 58.356 44.000 0.00 0.00 0.00 1.73
380 381 6.352222 CCCTAGTGCTTCCCATGTATATAAGG 60.352 46.154 0.00 0.00 0.00 2.69
381 382 6.213600 CCTAGTGCTTCCCATGTATATAAGGT 59.786 42.308 0.00 0.00 0.00 3.50
382 383 6.115448 AGTGCTTCCCATGTATATAAGGTC 57.885 41.667 0.00 0.00 0.00 3.85
383 384 5.013183 AGTGCTTCCCATGTATATAAGGTCC 59.987 44.000 0.00 0.00 0.00 4.46
384 385 5.013183 GTGCTTCCCATGTATATAAGGTCCT 59.987 44.000 0.00 0.00 0.00 3.85
385 386 6.212791 GTGCTTCCCATGTATATAAGGTCCTA 59.787 42.308 0.00 0.00 0.00 2.94
386 387 6.965866 TGCTTCCCATGTATATAAGGTCCTAT 59.034 38.462 0.00 0.00 0.00 2.57
387 388 7.461043 TGCTTCCCATGTATATAAGGTCCTATT 59.539 37.037 0.00 0.00 0.00 1.73
388 389 8.329502 GCTTCCCATGTATATAAGGTCCTATTT 58.670 37.037 0.00 0.00 0.00 1.40
418 419 4.625972 TTTTTCTCTTCTCCGCGTTTTT 57.374 36.364 4.92 0.00 0.00 1.94
488 489 8.791327 ACTTGTTCAACATTTTTCAAATCCTT 57.209 26.923 0.00 0.00 0.00 3.36
489 490 8.667463 ACTTGTTCAACATTTTTCAAATCCTTG 58.333 29.630 0.00 0.00 0.00 3.61
490 491 8.558973 TTGTTCAACATTTTTCAAATCCTTGT 57.441 26.923 0.00 0.00 33.94 3.16
491 492 8.558973 TGTTCAACATTTTTCAAATCCTTGTT 57.441 26.923 0.00 0.00 33.94 2.83
492 493 9.658799 TGTTCAACATTTTTCAAATCCTTGTTA 57.341 25.926 0.00 0.00 33.94 2.41
495 496 8.812329 TCAACATTTTTCAAATCCTTGTTAACG 58.188 29.630 0.26 0.00 33.94 3.18
496 497 8.599774 CAACATTTTTCAAATCCTTGTTAACGT 58.400 29.630 0.26 0.00 33.94 3.99
497 498 8.710835 ACATTTTTCAAATCCTTGTTAACGTT 57.289 26.923 5.88 5.88 33.94 3.99
498 499 9.157104 ACATTTTTCAAATCCTTGTTAACGTTT 57.843 25.926 5.91 0.00 33.94 3.60
499 500 9.980780 CATTTTTCAAATCCTTGTTAACGTTTT 57.019 25.926 5.91 0.00 33.94 2.43
501 502 7.758613 TTTCAAATCCTTGTTAACGTTTTCC 57.241 32.000 5.91 0.00 33.94 3.13
502 503 6.452494 TCAAATCCTTGTTAACGTTTTCCA 57.548 33.333 5.91 0.00 33.94 3.53
503 504 6.864342 TCAAATCCTTGTTAACGTTTTCCAA 58.136 32.000 5.91 6.46 33.94 3.53
504 505 7.321153 TCAAATCCTTGTTAACGTTTTCCAAA 58.679 30.769 5.91 0.00 33.94 3.28
505 506 7.982354 TCAAATCCTTGTTAACGTTTTCCAAAT 59.018 29.630 5.91 0.00 33.94 2.32
506 507 9.250624 CAAATCCTTGTTAACGTTTTCCAAATA 57.749 29.630 5.91 0.00 0.00 1.40
507 508 8.806177 AATCCTTGTTAACGTTTTCCAAATAC 57.194 30.769 5.91 0.00 0.00 1.89
508 509 7.571080 TCCTTGTTAACGTTTTCCAAATACT 57.429 32.000 5.91 0.00 0.00 2.12
509 510 7.998580 TCCTTGTTAACGTTTTCCAAATACTT 58.001 30.769 5.91 0.00 0.00 2.24
510 511 7.916450 TCCTTGTTAACGTTTTCCAAATACTTG 59.084 33.333 5.91 0.00 0.00 3.16
511 512 7.703197 CCTTGTTAACGTTTTCCAAATACTTGT 59.297 33.333 5.91 0.00 0.00 3.16
512 513 8.983307 TTGTTAACGTTTTCCAAATACTTGTT 57.017 26.923 5.91 0.00 0.00 2.83
513 514 8.617761 TGTTAACGTTTTCCAAATACTTGTTC 57.382 30.769 5.91 0.00 0.00 3.18
514 515 8.242053 TGTTAACGTTTTCCAAATACTTGTTCA 58.758 29.630 5.91 0.00 0.00 3.18
515 516 9.074443 GTTAACGTTTTCCAAATACTTGTTCAA 57.926 29.630 5.91 0.00 0.00 2.69
516 517 9.804758 TTAACGTTTTCCAAATACTTGTTCAAT 57.195 25.926 5.91 0.00 0.00 2.57
518 519 9.974980 AACGTTTTCCAAATACTTGTTCAATAT 57.025 25.926 0.00 0.00 0.00 1.28
519 520 9.974980 ACGTTTTCCAAATACTTGTTCAATATT 57.025 25.926 0.00 0.00 0.00 1.28
700 701 7.856492 AAGTAAAAACGAAAACAGAAAACGT 57.144 28.000 0.00 0.00 38.81 3.99
701 702 7.856492 AGTAAAAACGAAAACAGAAAACGTT 57.144 28.000 0.00 0.00 46.35 3.99
702 703 8.947304 AGTAAAAACGAAAACAGAAAACGTTA 57.053 26.923 0.00 0.00 44.27 3.18
703 704 9.392021 AGTAAAAACGAAAACAGAAAACGTTAA 57.608 25.926 0.00 0.00 44.27 2.01
704 705 9.434692 GTAAAAACGAAAACAGAAAACGTTAAC 57.565 29.630 0.00 0.00 44.27 2.01
705 706 7.620397 AAAACGAAAACAGAAAACGTTAACA 57.380 28.000 0.00 0.00 44.27 2.41
706 707 7.620397 AAACGAAAACAGAAAACGTTAACAA 57.380 28.000 0.00 0.00 44.27 2.83
707 708 7.620397 AACGAAAACAGAAAACGTTAACAAA 57.380 28.000 0.00 0.00 43.48 2.83
708 709 7.620397 ACGAAAACAGAAAACGTTAACAAAA 57.380 28.000 0.00 0.00 33.48 2.44
709 710 7.492498 ACGAAAACAGAAAACGTTAACAAAAC 58.508 30.769 0.00 0.00 33.48 2.43
723 724 7.091338 CGTTAACAAAACGTAAACAGAAAACG 58.909 34.615 6.39 0.00 42.17 3.60
797 798 9.465985 AAAGTAAAAACGAAAACAGAAAACAGA 57.534 25.926 0.00 0.00 0.00 3.41
798 799 9.465985 AAGTAAAAACGAAAACAGAAAACAGAA 57.534 25.926 0.00 0.00 0.00 3.02
799 800 9.465985 AGTAAAAACGAAAACAGAAAACAGAAA 57.534 25.926 0.00 0.00 0.00 2.52
801 802 8.981370 AAAAACGAAAACAGAAAACAGAAAAC 57.019 26.923 0.00 0.00 0.00 2.43
802 803 5.985526 ACGAAAACAGAAAACAGAAAACG 57.014 34.783 0.00 0.00 0.00 3.60
803 804 5.454520 ACGAAAACAGAAAACAGAAAACGT 58.545 33.333 0.00 0.00 0.00 3.99
804 805 6.601264 ACGAAAACAGAAAACAGAAAACGTA 58.399 32.000 0.00 0.00 0.00 3.57
805 806 7.076983 ACGAAAACAGAAAACAGAAAACGTAA 58.923 30.769 0.00 0.00 0.00 3.18
806 807 7.590689 ACGAAAACAGAAAACAGAAAACGTAAA 59.409 29.630 0.00 0.00 0.00 2.01
807 808 8.418681 CGAAAACAGAAAACAGAAAACGTAAAA 58.581 29.630 0.00 0.00 0.00 1.52
841 842 4.437587 GCTGTGGCCTCCCATGCT 62.438 66.667 3.32 0.00 44.51 3.79
842 843 2.124403 CTGTGGCCTCCCATGCTC 60.124 66.667 3.32 0.00 44.51 4.26
843 844 4.100084 TGTGGCCTCCCATGCTCG 62.100 66.667 3.32 0.00 44.51 5.03
844 845 4.101448 GTGGCCTCCCATGCTCGT 62.101 66.667 3.32 0.00 44.51 4.18
845 846 4.100084 TGGCCTCCCATGCTCGTG 62.100 66.667 3.32 0.00 35.79 4.35
846 847 4.864334 GGCCTCCCATGCTCGTGG 62.864 72.222 0.00 1.13 39.05 4.94
847 848 4.101448 GCCTCCCATGCTCGTGGT 62.101 66.667 7.30 0.00 37.57 4.16
848 849 2.187946 CCTCCCATGCTCGTGGTC 59.812 66.667 7.30 0.00 37.57 4.02
849 850 2.187946 CTCCCATGCTCGTGGTCC 59.812 66.667 7.30 0.00 37.57 4.46
850 851 3.723235 CTCCCATGCTCGTGGTCCG 62.723 68.421 7.30 0.00 37.57 4.79
851 852 4.838152 CCCATGCTCGTGGTCCGG 62.838 72.222 0.00 0.00 37.57 5.14
872 873 4.785512 AGCTCGGTCGCGCTTCAG 62.786 66.667 5.56 0.00 31.52 3.02
883 884 3.760673 GCTTCAGCGACAGACTCG 58.239 61.111 0.00 0.00 45.97 4.18
913 914 1.976112 GAGCCCGACTCCTTGTTCT 59.024 57.895 0.00 0.00 39.75 3.01
1024 1025 4.090930 CACGAGTCATAAAACCGAAATCGT 59.909 41.667 1.79 0.00 36.71 3.73
1268 1269 1.444553 GGAGCAGTCCAACGACGAG 60.445 63.158 0.00 0.00 44.28 4.18
1884 1885 2.417933 GTGCTTGTTGAGGCTGATACTG 59.582 50.000 0.00 0.00 0.00 2.74
1895 1896 3.447586 AGGCTGATACTGAAGAAGCGTTA 59.552 43.478 0.00 0.00 34.66 3.18
2804 2811 1.070289 CCTTATGCTTCGTACCCTCCC 59.930 57.143 0.00 0.00 0.00 4.30
2832 2839 2.292267 CACCAGGCATGTACAATCCTC 58.708 52.381 14.31 0.00 0.00 3.71
2941 2948 0.389948 GGTGCACAGAACTACCCTCG 60.390 60.000 20.43 0.00 0.00 4.63
2981 2988 4.426313 GGTGCACCTACCCAGCCC 62.426 72.222 29.12 0.00 34.56 5.19
3107 3114 3.953775 CCGCCTCCACCACCACTT 61.954 66.667 0.00 0.00 0.00 3.16
3167 3174 0.540365 CACCTTGGGCCACTCACAAT 60.540 55.000 5.23 0.00 0.00 2.71
3406 3413 5.945144 GGTAACTTACATTACTCCCTCCA 57.055 43.478 1.40 0.00 35.70 3.86
3407 3414 6.496144 GGTAACTTACATTACTCCCTCCAT 57.504 41.667 1.40 0.00 35.70 3.41
3408 3415 6.896883 GGTAACTTACATTACTCCCTCCATT 58.103 40.000 1.40 0.00 35.70 3.16
3409 3416 7.344134 GGTAACTTACATTACTCCCTCCATTT 58.656 38.462 1.40 0.00 35.70 2.32
3410 3417 7.498239 GGTAACTTACATTACTCCCTCCATTTC 59.502 40.741 1.40 0.00 35.70 2.17
3411 3418 6.636454 ACTTACATTACTCCCTCCATTTCA 57.364 37.500 0.00 0.00 0.00 2.69
3412 3419 6.653989 ACTTACATTACTCCCTCCATTTCAG 58.346 40.000 0.00 0.00 0.00 3.02
3413 3420 6.215636 ACTTACATTACTCCCTCCATTTCAGT 59.784 38.462 0.00 0.00 0.00 3.41
3414 3421 5.520748 ACATTACTCCCTCCATTTCAGTT 57.479 39.130 0.00 0.00 0.00 3.16
3415 3422 5.892348 ACATTACTCCCTCCATTTCAGTTT 58.108 37.500 0.00 0.00 0.00 2.66
3416 3423 7.027874 ACATTACTCCCTCCATTTCAGTTTA 57.972 36.000 0.00 0.00 0.00 2.01
3417 3424 6.884836 ACATTACTCCCTCCATTTCAGTTTAC 59.115 38.462 0.00 0.00 0.00 2.01
3418 3425 4.993705 ACTCCCTCCATTTCAGTTTACA 57.006 40.909 0.00 0.00 0.00 2.41
3419 3426 5.520748 ACTCCCTCCATTTCAGTTTACAT 57.479 39.130 0.00 0.00 0.00 2.29
3420 3427 5.256474 ACTCCCTCCATTTCAGTTTACATG 58.744 41.667 0.00 0.00 0.00 3.21
3421 3428 5.222130 ACTCCCTCCATTTCAGTTTACATGT 60.222 40.000 2.69 2.69 0.00 3.21
3422 3429 5.253330 TCCCTCCATTTCAGTTTACATGTC 58.747 41.667 0.00 0.00 0.00 3.06
3423 3430 4.399303 CCCTCCATTTCAGTTTACATGTCC 59.601 45.833 0.00 0.00 0.00 4.02
3424 3431 5.256474 CCTCCATTTCAGTTTACATGTCCT 58.744 41.667 0.00 0.00 0.00 3.85
3425 3432 6.414732 CCTCCATTTCAGTTTACATGTCCTA 58.585 40.000 0.00 0.00 0.00 2.94
3426 3433 7.056635 CCTCCATTTCAGTTTACATGTCCTAT 58.943 38.462 0.00 0.00 0.00 2.57
3427 3434 7.012704 CCTCCATTTCAGTTTACATGTCCTATG 59.987 40.741 0.00 0.00 0.00 2.23
3428 3435 6.318648 TCCATTTCAGTTTACATGTCCTATGC 59.681 38.462 0.00 0.00 0.00 3.14
3429 3436 5.794687 TTTCAGTTTACATGTCCTATGCG 57.205 39.130 0.00 0.00 0.00 4.73
3430 3437 4.465632 TCAGTTTACATGTCCTATGCGT 57.534 40.909 0.00 0.00 0.00 5.24
3431 3438 5.585820 TCAGTTTACATGTCCTATGCGTA 57.414 39.130 0.00 0.00 0.00 4.42
3432 3439 6.156748 TCAGTTTACATGTCCTATGCGTAT 57.843 37.500 0.00 0.00 0.00 3.06
3433 3440 7.279750 TCAGTTTACATGTCCTATGCGTATA 57.720 36.000 0.00 0.00 0.00 1.47
3434 3441 7.143340 TCAGTTTACATGTCCTATGCGTATAC 58.857 38.462 0.00 0.00 0.00 1.47
3435 3442 6.365247 CAGTTTACATGTCCTATGCGTATACC 59.635 42.308 0.00 0.00 0.00 2.73
3436 3443 6.267014 AGTTTACATGTCCTATGCGTATACCT 59.733 38.462 0.00 0.00 0.00 3.08
3437 3444 7.449395 AGTTTACATGTCCTATGCGTATACCTA 59.551 37.037 0.00 0.00 0.00 3.08
3438 3445 5.899120 ACATGTCCTATGCGTATACCTAG 57.101 43.478 0.00 0.00 0.00 3.02
3439 3446 4.705507 ACATGTCCTATGCGTATACCTAGG 59.294 45.833 7.41 7.41 33.46 3.02
3440 3447 4.377762 TGTCCTATGCGTATACCTAGGT 57.622 45.455 20.57 20.57 33.81 3.08
3441 3448 4.733165 TGTCCTATGCGTATACCTAGGTT 58.267 43.478 22.11 10.62 33.81 3.50
3442 3449 4.521639 TGTCCTATGCGTATACCTAGGTTG 59.478 45.833 22.11 9.15 33.81 3.77
3443 3450 3.508793 TCCTATGCGTATACCTAGGTTGC 59.491 47.826 22.11 18.70 33.81 4.17
3444 3451 2.833631 ATGCGTATACCTAGGTTGCC 57.166 50.000 22.11 7.02 0.00 4.52
3445 3452 1.487300 TGCGTATACCTAGGTTGCCA 58.513 50.000 22.11 1.21 0.00 4.92
3446 3453 1.832366 TGCGTATACCTAGGTTGCCAA 59.168 47.619 22.11 0.75 0.00 4.52
3447 3454 2.436542 TGCGTATACCTAGGTTGCCAAT 59.563 45.455 22.11 9.64 0.00 3.16
3448 3455 3.118186 TGCGTATACCTAGGTTGCCAATT 60.118 43.478 22.11 0.00 0.00 2.32
3449 3456 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
3450 3457 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
3451 3458 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
3452 3459 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
3453 3460 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
3454 3461 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
3455 3462 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
3456 3463 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
3457 3464 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
3458 3465 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
3459 3466 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
3460 3467 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
3461 3468 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
3462 3469 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
3463 3470 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
3464 3471 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
3567 3574 9.513906 TGACTTGTATTAGGTTGATCAAATTGA 57.486 29.630 10.35 0.00 0.00 2.57
3568 3575 9.774742 GACTTGTATTAGGTTGATCAAATTGAC 57.225 33.333 10.35 4.82 0.00 3.18
3569 3576 8.450964 ACTTGTATTAGGTTGATCAAATTGACG 58.549 33.333 10.35 0.00 0.00 4.35
3570 3577 8.554835 TTGTATTAGGTTGATCAAATTGACGA 57.445 30.769 10.35 1.53 0.00 4.20
3571 3578 7.970384 TGTATTAGGTTGATCAAATTGACGAC 58.030 34.615 10.35 4.41 0.00 4.34
3572 3579 5.873179 TTAGGTTGATCAAATTGACGACC 57.127 39.130 10.35 18.82 34.74 4.79
3573 3580 4.021102 AGGTTGATCAAATTGACGACCT 57.979 40.909 21.35 21.35 37.41 3.85
3574 3581 5.160607 AGGTTGATCAAATTGACGACCTA 57.839 39.130 23.65 2.75 38.91 3.08
3575 3582 5.178797 AGGTTGATCAAATTGACGACCTAG 58.821 41.667 23.65 0.00 38.91 3.02
3576 3583 4.332819 GGTTGATCAAATTGACGACCTAGG 59.667 45.833 10.35 7.41 33.24 3.02
3577 3584 4.137116 TGATCAAATTGACGACCTAGGG 57.863 45.455 14.81 0.00 0.00 3.53
3578 3585 3.118408 TGATCAAATTGACGACCTAGGGG 60.118 47.826 14.81 7.16 38.88 4.79
3594 3601 4.675029 GGTACGCGCACACCCTGT 62.675 66.667 12.27 1.77 0.00 4.00
3595 3602 2.259204 GTACGCGCACACCCTGTA 59.741 61.111 5.73 0.00 0.00 2.74
3596 3603 1.373246 GTACGCGCACACCCTGTAA 60.373 57.895 5.73 0.00 0.00 2.41
3597 3604 0.945265 GTACGCGCACACCCTGTAAA 60.945 55.000 5.73 0.00 0.00 2.01
3598 3605 0.945265 TACGCGCACACCCTGTAAAC 60.945 55.000 5.73 0.00 0.00 2.01
3599 3606 1.959226 CGCGCACACCCTGTAAACT 60.959 57.895 8.75 0.00 0.00 2.66
3600 3607 1.574428 GCGCACACCCTGTAAACTG 59.426 57.895 0.30 0.00 0.00 3.16
3601 3608 0.882927 GCGCACACCCTGTAAACTGA 60.883 55.000 0.30 0.00 0.00 3.41
3602 3609 1.808411 CGCACACCCTGTAAACTGAT 58.192 50.000 0.00 0.00 0.00 2.90
3603 3610 2.151202 CGCACACCCTGTAAACTGATT 58.849 47.619 0.00 0.00 0.00 2.57
3604 3611 2.095768 CGCACACCCTGTAAACTGATTG 60.096 50.000 0.00 0.00 0.00 2.67
3605 3612 3.146066 GCACACCCTGTAAACTGATTGA 58.854 45.455 0.00 0.00 0.00 2.57
3606 3613 3.189287 GCACACCCTGTAAACTGATTGAG 59.811 47.826 0.00 0.00 0.00 3.02
3607 3614 4.641396 CACACCCTGTAAACTGATTGAGA 58.359 43.478 0.00 0.00 0.00 3.27
3608 3615 4.692625 CACACCCTGTAAACTGATTGAGAG 59.307 45.833 0.00 0.00 0.00 3.20
3609 3616 4.256920 CACCCTGTAAACTGATTGAGAGG 58.743 47.826 0.00 0.00 0.00 3.69
3610 3617 3.264450 ACCCTGTAAACTGATTGAGAGGG 59.736 47.826 5.26 5.26 44.02 4.30
3611 3618 3.519510 CCCTGTAAACTGATTGAGAGGGA 59.480 47.826 0.94 0.00 41.40 4.20
3612 3619 4.383552 CCCTGTAAACTGATTGAGAGGGAG 60.384 50.000 0.94 0.00 41.40 4.30
3613 3620 4.223923 CCTGTAAACTGATTGAGAGGGAGT 59.776 45.833 0.00 0.00 0.00 3.85
3614 3621 5.422331 CCTGTAAACTGATTGAGAGGGAGTA 59.578 44.000 0.00 0.00 0.00 2.59
3734 3741 8.807118 TGTTTTGTTATTTCTGCCCATATTACA 58.193 29.630 0.00 0.00 0.00 2.41
3814 3821 2.941720 CCTTCAGAAAGTATCAGCTGCC 59.058 50.000 9.47 0.00 0.00 4.85
4009 4030 5.534207 AAAAACAAATCTGATGCTGACCA 57.466 34.783 6.92 0.00 0.00 4.02
4070 4091 3.320610 TCCATGTGTTCCCTTTTTGGA 57.679 42.857 0.00 0.00 38.35 3.53
4079 4101 5.593095 GTGTTCCCTTTTTGGAAGTACTTCT 59.407 40.000 29.66 0.67 44.86 2.85
4374 4396 2.759355 TGGATGGTCGAGGAGGTTAAT 58.241 47.619 0.00 0.00 0.00 1.40
4421 4443 3.302740 GCATTTGCTTTATCTCCGTCTCG 60.303 47.826 0.00 0.00 38.21 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.546923 CAATTGTGCTTCTGGGCATCA 59.453 47.619 0.00 0.00 44.34 3.07
1 2 1.547372 ACAATTGTGCTTCTGGGCATC 59.453 47.619 11.07 0.00 44.34 3.91
2 3 1.274167 CACAATTGTGCTTCTGGGCAT 59.726 47.619 24.69 0.00 44.34 4.40
3 4 0.675083 CACAATTGTGCTTCTGGGCA 59.325 50.000 24.69 0.00 39.39 5.36
4 5 0.961019 TCACAATTGTGCTTCTGGGC 59.039 50.000 29.84 0.00 45.25 5.36
5 6 3.947910 AATCACAATTGTGCTTCTGGG 57.052 42.857 29.84 7.73 45.25 4.45
31 32 9.761504 CCCAAAAATTGCTTTCCAAAAATTATT 57.238 25.926 0.00 0.00 36.92 1.40
32 33 9.140874 TCCCAAAAATTGCTTTCCAAAAATTAT 57.859 25.926 0.00 0.00 36.92 1.28
33 34 8.409371 GTCCCAAAAATTGCTTTCCAAAAATTA 58.591 29.630 0.00 0.00 36.92 1.40
34 35 7.093596 TGTCCCAAAAATTGCTTTCCAAAAATT 60.094 29.630 0.00 0.00 36.92 1.82
35 36 6.379417 TGTCCCAAAAATTGCTTTCCAAAAAT 59.621 30.769 0.00 0.00 36.92 1.82
36 37 5.711976 TGTCCCAAAAATTGCTTTCCAAAAA 59.288 32.000 0.00 0.00 36.92 1.94
37 38 5.124617 GTGTCCCAAAAATTGCTTTCCAAAA 59.875 36.000 0.00 0.00 36.92 2.44
38 39 4.637977 GTGTCCCAAAAATTGCTTTCCAAA 59.362 37.500 0.00 0.00 36.92 3.28
39 40 4.195416 GTGTCCCAAAAATTGCTTTCCAA 58.805 39.130 0.00 0.00 37.94 3.53
40 41 3.198635 TGTGTCCCAAAAATTGCTTTCCA 59.801 39.130 0.00 0.00 0.00 3.53
41 42 3.559655 GTGTGTCCCAAAAATTGCTTTCC 59.440 43.478 0.00 0.00 0.00 3.13
42 43 4.187694 TGTGTGTCCCAAAAATTGCTTTC 58.812 39.130 0.00 0.00 0.00 2.62
43 44 4.190772 CTGTGTGTCCCAAAAATTGCTTT 58.809 39.130 0.00 0.00 0.00 3.51
44 45 3.197549 ACTGTGTGTCCCAAAAATTGCTT 59.802 39.130 0.00 0.00 0.00 3.91
45 46 2.765699 ACTGTGTGTCCCAAAAATTGCT 59.234 40.909 0.00 0.00 0.00 3.91
46 47 3.177997 ACTGTGTGTCCCAAAAATTGC 57.822 42.857 0.00 0.00 0.00 3.56
47 48 4.502962 ACAACTGTGTGTCCCAAAAATTG 58.497 39.130 0.00 0.00 36.31 2.32
48 49 4.817318 ACAACTGTGTGTCCCAAAAATT 57.183 36.364 0.00 0.00 36.31 1.82
62 63 0.464036 TCCACGAGAAGCACAACTGT 59.536 50.000 0.00 0.00 0.00 3.55
63 64 1.581934 TTCCACGAGAAGCACAACTG 58.418 50.000 0.00 0.00 0.00 3.16
64 65 2.325583 TTTCCACGAGAAGCACAACT 57.674 45.000 0.00 0.00 35.40 3.16
65 66 3.496884 TGTATTTCCACGAGAAGCACAAC 59.503 43.478 0.00 0.00 35.40 3.32
66 67 3.734463 TGTATTTCCACGAGAAGCACAA 58.266 40.909 0.00 0.00 35.40 3.33
67 68 3.006430 TCTGTATTTCCACGAGAAGCACA 59.994 43.478 0.00 0.00 35.40 4.57
68 69 3.585862 TCTGTATTTCCACGAGAAGCAC 58.414 45.455 0.00 0.00 35.40 4.40
69 70 3.953712 TCTGTATTTCCACGAGAAGCA 57.046 42.857 0.00 0.00 35.40 3.91
70 71 4.631813 ACAATCTGTATTTCCACGAGAAGC 59.368 41.667 0.00 0.00 35.40 3.86
71 72 5.446473 GCACAATCTGTATTTCCACGAGAAG 60.446 44.000 0.00 0.00 35.40 2.85
72 73 4.391830 GCACAATCTGTATTTCCACGAGAA 59.608 41.667 0.00 0.00 0.00 2.87
73 74 3.932710 GCACAATCTGTATTTCCACGAGA 59.067 43.478 0.00 0.00 0.00 4.04
74 75 3.935203 AGCACAATCTGTATTTCCACGAG 59.065 43.478 0.00 0.00 0.00 4.18
75 76 3.937814 AGCACAATCTGTATTTCCACGA 58.062 40.909 0.00 0.00 0.00 4.35
76 77 4.685169 AAGCACAATCTGTATTTCCACG 57.315 40.909 0.00 0.00 0.00 4.94
77 78 6.366061 GGAAAAAGCACAATCTGTATTTCCAC 59.634 38.462 8.61 0.00 37.62 4.02
78 79 6.454795 GGAAAAAGCACAATCTGTATTTCCA 58.545 36.000 8.61 0.00 37.62 3.53
79 80 5.869344 GGGAAAAAGCACAATCTGTATTTCC 59.131 40.000 0.00 0.00 37.33 3.13
80 81 6.691508 AGGGAAAAAGCACAATCTGTATTTC 58.308 36.000 0.00 0.00 0.00 2.17
81 82 6.670695 AGGGAAAAAGCACAATCTGTATTT 57.329 33.333 0.00 0.00 0.00 1.40
82 83 6.494835 AGAAGGGAAAAAGCACAATCTGTATT 59.505 34.615 0.00 0.00 0.00 1.89
83 84 6.012745 AGAAGGGAAAAAGCACAATCTGTAT 58.987 36.000 0.00 0.00 0.00 2.29
84 85 5.385198 AGAAGGGAAAAAGCACAATCTGTA 58.615 37.500 0.00 0.00 0.00 2.74
85 86 4.218312 AGAAGGGAAAAAGCACAATCTGT 58.782 39.130 0.00 0.00 0.00 3.41
86 87 4.614535 CGAGAAGGGAAAAAGCACAATCTG 60.615 45.833 0.00 0.00 0.00 2.90
87 88 3.503748 CGAGAAGGGAAAAAGCACAATCT 59.496 43.478 0.00 0.00 0.00 2.40
88 89 3.502211 TCGAGAAGGGAAAAAGCACAATC 59.498 43.478 0.00 0.00 0.00 2.67
89 90 3.486383 TCGAGAAGGGAAAAAGCACAAT 58.514 40.909 0.00 0.00 0.00 2.71
90 91 2.878406 CTCGAGAAGGGAAAAAGCACAA 59.122 45.455 6.58 0.00 0.00 3.33
91 92 2.104111 TCTCGAGAAGGGAAAAAGCACA 59.896 45.455 14.01 0.00 0.00 4.57
92 93 2.767505 TCTCGAGAAGGGAAAAAGCAC 58.232 47.619 14.01 0.00 0.00 4.40
93 94 3.485463 TTCTCGAGAAGGGAAAAAGCA 57.515 42.857 23.74 0.00 36.16 3.91
94 95 3.753797 ACATTCTCGAGAAGGGAAAAAGC 59.246 43.478 34.99 0.00 43.59 3.51
95 96 4.378874 GCACATTCTCGAGAAGGGAAAAAG 60.379 45.833 34.99 20.90 43.59 2.27
96 97 3.502211 GCACATTCTCGAGAAGGGAAAAA 59.498 43.478 34.99 12.58 43.59 1.94
97 98 3.074412 GCACATTCTCGAGAAGGGAAAA 58.926 45.455 34.99 13.29 43.59 2.29
98 99 2.303022 AGCACATTCTCGAGAAGGGAAA 59.697 45.455 34.99 14.00 43.59 3.13
99 100 1.902508 AGCACATTCTCGAGAAGGGAA 59.097 47.619 34.99 14.70 44.64 3.97
100 101 1.561643 AGCACATTCTCGAGAAGGGA 58.438 50.000 34.99 15.07 39.85 4.20
101 102 2.093764 AGAAGCACATTCTCGAGAAGGG 60.094 50.000 34.99 28.04 45.50 3.95
102 103 3.244033 AGAAGCACATTCTCGAGAAGG 57.756 47.619 31.95 31.95 45.50 3.46
125 126 4.109050 GACAATTGTGCTTCCGTGAAAAA 58.891 39.130 17.58 0.00 0.00 1.94
126 127 3.380004 AGACAATTGTGCTTCCGTGAAAA 59.620 39.130 17.58 0.00 0.00 2.29
127 128 2.948979 AGACAATTGTGCTTCCGTGAAA 59.051 40.909 17.58 0.00 0.00 2.69
128 129 2.290367 CAGACAATTGTGCTTCCGTGAA 59.710 45.455 17.58 0.00 0.00 3.18
129 130 1.872952 CAGACAATTGTGCTTCCGTGA 59.127 47.619 17.58 0.00 0.00 4.35
130 131 1.603802 ACAGACAATTGTGCTTCCGTG 59.396 47.619 17.58 4.35 0.00 4.94
131 132 1.967319 ACAGACAATTGTGCTTCCGT 58.033 45.000 17.58 5.02 0.00 4.69
132 133 3.300009 GAAACAGACAATTGTGCTTCCG 58.700 45.455 17.58 4.45 0.00 4.30
133 134 3.552890 GGGAAACAGACAATTGTGCTTCC 60.553 47.826 17.58 17.25 37.29 3.46
134 135 3.319122 AGGGAAACAGACAATTGTGCTTC 59.681 43.478 17.58 9.45 0.00 3.86
135 136 3.299503 AGGGAAACAGACAATTGTGCTT 58.700 40.909 17.58 0.00 0.00 3.91
136 137 2.949447 AGGGAAACAGACAATTGTGCT 58.051 42.857 17.58 10.06 0.00 4.40
137 138 3.552890 GGAAGGGAAACAGACAATTGTGC 60.553 47.826 17.58 7.82 0.00 4.57
138 139 3.891366 AGGAAGGGAAACAGACAATTGTG 59.109 43.478 17.58 5.06 0.00 3.33
139 140 3.891366 CAGGAAGGGAAACAGACAATTGT 59.109 43.478 11.78 11.78 0.00 2.71
140 141 3.891366 ACAGGAAGGGAAACAGACAATTG 59.109 43.478 3.24 3.24 0.00 2.32
141 142 4.184649 ACAGGAAGGGAAACAGACAATT 57.815 40.909 0.00 0.00 0.00 2.32
142 143 3.884037 ACAGGAAGGGAAACAGACAAT 57.116 42.857 0.00 0.00 0.00 2.71
143 144 3.053991 TGAACAGGAAGGGAAACAGACAA 60.054 43.478 0.00 0.00 0.00 3.18
144 145 2.507886 TGAACAGGAAGGGAAACAGACA 59.492 45.455 0.00 0.00 0.00 3.41
145 146 3.208747 TGAACAGGAAGGGAAACAGAC 57.791 47.619 0.00 0.00 0.00 3.51
146 147 3.202151 ACTTGAACAGGAAGGGAAACAGA 59.798 43.478 0.00 0.00 0.00 3.41
147 148 3.555966 ACTTGAACAGGAAGGGAAACAG 58.444 45.455 0.00 0.00 0.00 3.16
148 149 3.662759 ACTTGAACAGGAAGGGAAACA 57.337 42.857 0.00 0.00 0.00 2.83
149 150 3.699538 ACAACTTGAACAGGAAGGGAAAC 59.300 43.478 0.00 0.00 0.00 2.78
150 151 3.976015 ACAACTTGAACAGGAAGGGAAA 58.024 40.909 0.00 0.00 0.00 3.13
151 152 3.662759 ACAACTTGAACAGGAAGGGAA 57.337 42.857 0.00 0.00 0.00 3.97
152 153 3.662759 AACAACTTGAACAGGAAGGGA 57.337 42.857 0.00 0.00 0.00 4.20
153 154 3.954258 AGAAACAACTTGAACAGGAAGGG 59.046 43.478 0.00 0.00 0.00 3.95
154 155 5.582689 AAGAAACAACTTGAACAGGAAGG 57.417 39.130 0.00 0.00 0.00 3.46
155 156 7.220875 GCTAAAAGAAACAACTTGAACAGGAAG 59.779 37.037 0.00 0.00 0.00 3.46
156 157 7.033185 GCTAAAAGAAACAACTTGAACAGGAA 58.967 34.615 0.00 0.00 0.00 3.36
157 158 6.405397 GGCTAAAAGAAACAACTTGAACAGGA 60.405 38.462 0.00 0.00 0.00 3.86
158 159 5.748630 GGCTAAAAGAAACAACTTGAACAGG 59.251 40.000 0.00 0.00 0.00 4.00
159 160 6.329496 TGGCTAAAAGAAACAACTTGAACAG 58.671 36.000 0.00 0.00 0.00 3.16
160 161 6.274157 TGGCTAAAAGAAACAACTTGAACA 57.726 33.333 0.00 0.00 0.00 3.18
161 162 6.142320 CGATGGCTAAAAGAAACAACTTGAAC 59.858 38.462 0.00 0.00 0.00 3.18
162 163 6.038825 TCGATGGCTAAAAGAAACAACTTGAA 59.961 34.615 0.00 0.00 0.00 2.69
163 164 5.529430 TCGATGGCTAAAAGAAACAACTTGA 59.471 36.000 0.00 0.00 0.00 3.02
164 165 5.757886 TCGATGGCTAAAAGAAACAACTTG 58.242 37.500 0.00 0.00 0.00 3.16
165 166 6.385649 TTCGATGGCTAAAAGAAACAACTT 57.614 33.333 0.00 0.00 0.00 2.66
166 167 6.385649 TTTCGATGGCTAAAAGAAACAACT 57.614 33.333 0.00 0.00 0.00 3.16
167 168 6.695713 ACTTTTCGATGGCTAAAAGAAACAAC 59.304 34.615 11.04 0.00 42.62 3.32
168 169 6.695278 CACTTTTCGATGGCTAAAAGAAACAA 59.305 34.615 11.04 0.00 42.62 2.83
169 170 6.205784 CACTTTTCGATGGCTAAAAGAAACA 58.794 36.000 11.04 0.00 42.62 2.83
170 171 5.117135 GCACTTTTCGATGGCTAAAAGAAAC 59.883 40.000 11.04 0.00 42.62 2.78
171 172 5.009610 AGCACTTTTCGATGGCTAAAAGAAA 59.990 36.000 11.04 5.34 42.62 2.52
172 173 4.518970 AGCACTTTTCGATGGCTAAAAGAA 59.481 37.500 11.04 0.38 42.62 2.52
173 174 4.072131 AGCACTTTTCGATGGCTAAAAGA 58.928 39.130 11.04 0.00 42.62 2.52
174 175 4.083324 TGAGCACTTTTCGATGGCTAAAAG 60.083 41.667 0.00 0.00 44.53 2.27
175 176 3.818210 TGAGCACTTTTCGATGGCTAAAA 59.182 39.130 0.00 0.00 34.44 1.52
176 177 3.407698 TGAGCACTTTTCGATGGCTAAA 58.592 40.909 0.00 0.00 34.44 1.85
177 178 3.002791 CTGAGCACTTTTCGATGGCTAA 58.997 45.455 0.00 0.00 34.44 3.09
178 179 2.621338 CTGAGCACTTTTCGATGGCTA 58.379 47.619 0.00 0.00 34.44 3.93
179 180 1.446907 CTGAGCACTTTTCGATGGCT 58.553 50.000 0.00 0.00 37.56 4.75
180 181 0.179179 GCTGAGCACTTTTCGATGGC 60.179 55.000 0.00 0.00 0.00 4.40
181 182 1.396301 GAGCTGAGCACTTTTCGATGG 59.604 52.381 7.39 0.00 0.00 3.51
182 183 2.071540 TGAGCTGAGCACTTTTCGATG 58.928 47.619 7.39 0.00 0.00 3.84
183 184 2.072298 GTGAGCTGAGCACTTTTCGAT 58.928 47.619 7.39 0.00 33.57 3.59
184 185 1.069204 AGTGAGCTGAGCACTTTTCGA 59.931 47.619 7.39 0.00 43.67 3.71
185 186 1.506493 AGTGAGCTGAGCACTTTTCG 58.494 50.000 7.39 0.00 43.67 3.46
186 187 4.248859 TGATAGTGAGCTGAGCACTTTTC 58.751 43.478 7.39 9.69 43.67 2.29
187 188 4.277515 TGATAGTGAGCTGAGCACTTTT 57.722 40.909 7.39 1.33 43.67 2.27
188 189 3.969287 TGATAGTGAGCTGAGCACTTT 57.031 42.857 7.39 4.53 43.67 2.66
189 190 3.431905 CCATGATAGTGAGCTGAGCACTT 60.432 47.826 7.39 1.30 43.67 3.16
191 192 2.102084 TCCATGATAGTGAGCTGAGCAC 59.898 50.000 7.39 0.00 36.53 4.40
192 193 2.364647 CTCCATGATAGTGAGCTGAGCA 59.635 50.000 7.39 0.00 0.00 4.26
193 194 2.364970 ACTCCATGATAGTGAGCTGAGC 59.635 50.000 0.00 0.00 0.00 4.26
194 195 3.384146 ACACTCCATGATAGTGAGCTGAG 59.616 47.826 25.77 9.95 45.89 3.35
195 196 3.131755 CACACTCCATGATAGTGAGCTGA 59.868 47.826 25.77 0.00 45.89 4.26
196 197 3.118847 ACACACTCCATGATAGTGAGCTG 60.119 47.826 25.77 18.46 45.89 4.24
197 198 3.102972 ACACACTCCATGATAGTGAGCT 58.897 45.455 25.77 11.91 45.89 4.09
198 199 3.533606 ACACACTCCATGATAGTGAGC 57.466 47.619 25.77 0.00 45.89 4.26
199 200 5.582689 TGTACACACTCCATGATAGTGAG 57.417 43.478 25.77 21.58 45.89 3.51
200 201 5.422012 ACATGTACACACTCCATGATAGTGA 59.578 40.000 25.77 10.44 45.89 3.41
202 203 5.395657 CCACATGTACACACTCCATGATAGT 60.396 44.000 0.00 0.00 38.56 2.12
203 204 5.052481 CCACATGTACACACTCCATGATAG 58.948 45.833 0.00 0.00 38.56 2.08
204 205 4.141733 CCCACATGTACACACTCCATGATA 60.142 45.833 0.00 0.00 38.56 2.15
205 206 3.370846 CCCACATGTACACACTCCATGAT 60.371 47.826 0.00 0.00 38.56 2.45
206 207 2.027285 CCCACATGTACACACTCCATGA 60.027 50.000 0.00 0.00 38.56 3.07
207 208 2.290260 ACCCACATGTACACACTCCATG 60.290 50.000 0.00 0.00 41.31 3.66
208 209 1.985159 ACCCACATGTACACACTCCAT 59.015 47.619 0.00 0.00 0.00 3.41
209 210 1.071542 CACCCACATGTACACACTCCA 59.928 52.381 0.00 0.00 0.00 3.86
210 211 1.808411 CACCCACATGTACACACTCC 58.192 55.000 0.00 0.00 0.00 3.85
211 212 1.156736 GCACCCACATGTACACACTC 58.843 55.000 0.00 0.00 0.00 3.51
212 213 0.250727 GGCACCCACATGTACACACT 60.251 55.000 0.00 0.00 0.00 3.55
213 214 2.253513 GGCACCCACATGTACACAC 58.746 57.895 0.00 0.00 0.00 3.82
214 215 4.811206 GGCACCCACATGTACACA 57.189 55.556 0.00 0.00 0.00 3.72
227 228 1.745489 GAATGGAGTGTCGGGGCAC 60.745 63.158 0.00 0.00 39.51 5.01
228 229 0.616395 TAGAATGGAGTGTCGGGGCA 60.616 55.000 0.00 0.00 0.00 5.36
229 230 0.539986 TTAGAATGGAGTGTCGGGGC 59.460 55.000 0.00 0.00 0.00 5.80
230 231 3.560636 ATTTAGAATGGAGTGTCGGGG 57.439 47.619 0.00 0.00 0.00 5.73
231 232 6.995511 TTAAATTTAGAATGGAGTGTCGGG 57.004 37.500 0.00 0.00 0.00 5.14
232 233 7.749126 GTGTTTAAATTTAGAATGGAGTGTCGG 59.251 37.037 0.00 0.00 0.00 4.79
233 234 7.749126 GGTGTTTAAATTTAGAATGGAGTGTCG 59.251 37.037 0.00 0.00 0.00 4.35
234 235 8.027189 GGGTGTTTAAATTTAGAATGGAGTGTC 58.973 37.037 0.00 0.00 0.00 3.67
235 236 7.507616 TGGGTGTTTAAATTTAGAATGGAGTGT 59.492 33.333 0.00 0.00 0.00 3.55
236 237 7.891561 TGGGTGTTTAAATTTAGAATGGAGTG 58.108 34.615 0.00 0.00 0.00 3.51
237 238 8.664669 ATGGGTGTTTAAATTTAGAATGGAGT 57.335 30.769 0.00 0.00 0.00 3.85
238 239 8.748412 TGATGGGTGTTTAAATTTAGAATGGAG 58.252 33.333 0.00 0.00 0.00 3.86
239 240 8.657387 TGATGGGTGTTTAAATTTAGAATGGA 57.343 30.769 0.00 0.00 0.00 3.41
280 281 9.774413 ACGACTTCTTATTTTCTTTAAGAGGAA 57.226 29.630 8.87 0.00 37.09 3.36
281 282 9.204570 CACGACTTCTTATTTTCTTTAAGAGGA 57.795 33.333 8.87 0.00 37.09 3.71
282 283 8.989980 ACACGACTTCTTATTTTCTTTAAGAGG 58.010 33.333 0.00 0.00 37.09 3.69
297 298 9.367444 CATCCTAGTAATAAAACACGACTTCTT 57.633 33.333 0.00 0.00 0.00 2.52
298 299 7.980099 CCATCCTAGTAATAAAACACGACTTCT 59.020 37.037 0.00 0.00 0.00 2.85
299 300 7.224167 CCCATCCTAGTAATAAAACACGACTTC 59.776 40.741 0.00 0.00 0.00 3.01
300 301 7.046033 CCCATCCTAGTAATAAAACACGACTT 58.954 38.462 0.00 0.00 0.00 3.01
301 302 6.579865 CCCATCCTAGTAATAAAACACGACT 58.420 40.000 0.00 0.00 0.00 4.18
302 303 5.235831 GCCCATCCTAGTAATAAAACACGAC 59.764 44.000 0.00 0.00 0.00 4.34
303 304 5.129815 AGCCCATCCTAGTAATAAAACACGA 59.870 40.000 0.00 0.00 0.00 4.35
304 305 5.365619 AGCCCATCCTAGTAATAAAACACG 58.634 41.667 0.00 0.00 0.00 4.49
305 306 6.592870 AGAGCCCATCCTAGTAATAAAACAC 58.407 40.000 0.00 0.00 0.00 3.32
306 307 6.824958 AGAGCCCATCCTAGTAATAAAACA 57.175 37.500 0.00 0.00 0.00 2.83
307 308 7.964624 AGTAGAGCCCATCCTAGTAATAAAAC 58.035 38.462 0.00 0.00 0.00 2.43
308 309 8.562949 AAGTAGAGCCCATCCTAGTAATAAAA 57.437 34.615 0.00 0.00 0.00 1.52
309 310 9.664777 TTAAGTAGAGCCCATCCTAGTAATAAA 57.335 33.333 0.00 0.00 0.00 1.40
310 311 9.664777 TTTAAGTAGAGCCCATCCTAGTAATAA 57.335 33.333 0.00 0.00 0.00 1.40
311 312 9.310449 CTTTAAGTAGAGCCCATCCTAGTAATA 57.690 37.037 0.00 0.00 0.00 0.98
312 313 8.011290 TCTTTAAGTAGAGCCCATCCTAGTAAT 58.989 37.037 0.00 0.00 0.00 1.89
313 314 7.359849 TCTTTAAGTAGAGCCCATCCTAGTAA 58.640 38.462 0.00 0.00 0.00 2.24
314 315 6.919158 TCTTTAAGTAGAGCCCATCCTAGTA 58.081 40.000 0.00 0.00 0.00 1.82
315 316 5.778542 TCTTTAAGTAGAGCCCATCCTAGT 58.221 41.667 0.00 0.00 0.00 2.57
316 317 6.732896 TTCTTTAAGTAGAGCCCATCCTAG 57.267 41.667 0.00 0.00 0.00 3.02
317 318 7.504926 TTTTCTTTAAGTAGAGCCCATCCTA 57.495 36.000 0.00 0.00 0.00 2.94
318 319 6.388619 TTTTCTTTAAGTAGAGCCCATCCT 57.611 37.500 0.00 0.00 0.00 3.24
319 320 8.747538 TTATTTTCTTTAAGTAGAGCCCATCC 57.252 34.615 0.00 0.00 0.00 3.51
320 321 8.841300 CCTTATTTTCTTTAAGTAGAGCCCATC 58.159 37.037 0.00 0.00 0.00 3.51
321 322 7.285629 GCCTTATTTTCTTTAAGTAGAGCCCAT 59.714 37.037 0.00 0.00 0.00 4.00
322 323 6.602009 GCCTTATTTTCTTTAAGTAGAGCCCA 59.398 38.462 0.00 0.00 0.00 5.36
323 324 6.238402 CGCCTTATTTTCTTTAAGTAGAGCCC 60.238 42.308 0.00 0.00 0.00 5.19
324 325 6.238402 CCGCCTTATTTTCTTTAAGTAGAGCC 60.238 42.308 0.00 0.00 0.00 4.70
325 326 6.315642 ACCGCCTTATTTTCTTTAAGTAGAGC 59.684 38.462 0.00 0.00 0.00 4.09
326 327 7.254017 CGACCGCCTTATTTTCTTTAAGTAGAG 60.254 40.741 0.00 0.00 0.00 2.43
327 328 6.532657 CGACCGCCTTATTTTCTTTAAGTAGA 59.467 38.462 0.00 0.00 0.00 2.59
328 329 6.702897 CGACCGCCTTATTTTCTTTAAGTAG 58.297 40.000 0.00 0.00 0.00 2.57
329 330 5.063817 GCGACCGCCTTATTTTCTTTAAGTA 59.936 40.000 2.55 0.00 34.56 2.24
330 331 4.142752 GCGACCGCCTTATTTTCTTTAAGT 60.143 41.667 2.55 0.00 34.56 2.24
331 332 4.340263 GCGACCGCCTTATTTTCTTTAAG 58.660 43.478 2.55 0.00 34.56 1.85
332 333 3.181518 CGCGACCGCCTTATTTTCTTTAA 60.182 43.478 0.00 0.00 37.98 1.52
333 334 2.349275 CGCGACCGCCTTATTTTCTTTA 59.651 45.455 0.00 0.00 37.98 1.85
334 335 1.129811 CGCGACCGCCTTATTTTCTTT 59.870 47.619 0.00 0.00 37.98 2.52
335 336 0.725117 CGCGACCGCCTTATTTTCTT 59.275 50.000 0.00 0.00 37.98 2.52
336 337 2.380081 CGCGACCGCCTTATTTTCT 58.620 52.632 0.00 0.00 37.98 2.52
337 338 4.968032 CGCGACCGCCTTATTTTC 57.032 55.556 0.00 0.00 37.98 2.29
348 349 4.452733 AAGCACTAGGGCGCGACC 62.453 66.667 27.87 27.87 39.27 4.79
349 350 2.886124 GAAGCACTAGGGCGCGAC 60.886 66.667 12.10 6.99 39.27 5.19
350 351 4.143333 GGAAGCACTAGGGCGCGA 62.143 66.667 12.10 0.00 39.27 5.87
352 353 3.406595 ATGGGAAGCACTAGGGCGC 62.407 63.158 12.24 7.88 39.27 6.53
353 354 1.524621 CATGGGAAGCACTAGGGCG 60.525 63.158 12.24 0.00 39.27 6.13
354 355 0.837272 TACATGGGAAGCACTAGGGC 59.163 55.000 9.62 9.62 0.00 5.19
355 356 6.352222 CCTTATATACATGGGAAGCACTAGGG 60.352 46.154 0.00 0.00 0.00 3.53
356 357 6.213600 ACCTTATATACATGGGAAGCACTAGG 59.786 42.308 0.00 0.00 0.00 3.02
357 358 7.246171 ACCTTATATACATGGGAAGCACTAG 57.754 40.000 0.00 0.00 0.00 2.57
358 359 6.212791 GGACCTTATATACATGGGAAGCACTA 59.787 42.308 0.00 0.00 0.00 2.74
359 360 5.013183 GGACCTTATATACATGGGAAGCACT 59.987 44.000 0.00 0.00 0.00 4.40
360 361 5.013183 AGGACCTTATATACATGGGAAGCAC 59.987 44.000 0.00 0.00 0.00 4.40
361 362 5.162637 AGGACCTTATATACATGGGAAGCA 58.837 41.667 0.00 0.00 0.00 3.91
362 363 5.763876 AGGACCTTATATACATGGGAAGC 57.236 43.478 0.00 0.00 0.00 3.86
397 398 4.625972 AAAAACGCGGAGAAGAGAAAAA 57.374 36.364 12.47 0.00 0.00 1.94
462 463 9.883142 AAGGATTTGAAAAATGTTGAACAAGTA 57.117 25.926 0.62 0.00 0.00 2.24
463 464 8.667463 CAAGGATTTGAAAAATGTTGAACAAGT 58.333 29.630 0.62 0.00 36.36 3.16
464 465 8.667463 ACAAGGATTTGAAAAATGTTGAACAAG 58.333 29.630 0.62 0.00 37.73 3.16
465 466 8.558973 ACAAGGATTTGAAAAATGTTGAACAA 57.441 26.923 0.62 0.00 37.73 2.83
466 467 8.558973 AACAAGGATTTGAAAAATGTTGAACA 57.441 26.923 0.00 0.00 37.73 3.18
469 470 8.812329 CGTTAACAAGGATTTGAAAAATGTTGA 58.188 29.630 6.39 2.16 37.73 3.18
470 471 8.599774 ACGTTAACAAGGATTTGAAAAATGTTG 58.400 29.630 6.39 0.00 37.73 3.33
471 472 8.710835 ACGTTAACAAGGATTTGAAAAATGTT 57.289 26.923 6.39 0.00 37.73 2.71
472 473 8.710835 AACGTTAACAAGGATTTGAAAAATGT 57.289 26.923 0.00 0.00 37.73 2.71
473 474 9.980780 AAAACGTTAACAAGGATTTGAAAAATG 57.019 25.926 0.00 0.00 37.73 2.32
475 476 8.657729 GGAAAACGTTAACAAGGATTTGAAAAA 58.342 29.630 0.00 0.00 37.73 1.94
476 477 7.817962 TGGAAAACGTTAACAAGGATTTGAAAA 59.182 29.630 0.00 0.00 37.73 2.29
477 478 7.321153 TGGAAAACGTTAACAAGGATTTGAAA 58.679 30.769 0.00 0.00 37.73 2.69
478 479 6.864342 TGGAAAACGTTAACAAGGATTTGAA 58.136 32.000 0.00 0.00 37.73 2.69
479 480 6.452494 TGGAAAACGTTAACAAGGATTTGA 57.548 33.333 0.00 0.00 37.73 2.69
480 481 7.527084 TTTGGAAAACGTTAACAAGGATTTG 57.473 32.000 0.00 0.00 40.24 2.32
481 482 9.251792 GTATTTGGAAAACGTTAACAAGGATTT 57.748 29.630 0.00 0.00 0.00 2.17
482 483 8.635328 AGTATTTGGAAAACGTTAACAAGGATT 58.365 29.630 0.00 0.00 0.00 3.01
483 484 8.173542 AGTATTTGGAAAACGTTAACAAGGAT 57.826 30.769 0.00 2.21 0.00 3.24
484 485 7.571080 AGTATTTGGAAAACGTTAACAAGGA 57.429 32.000 0.00 0.00 0.00 3.36
485 486 7.703197 ACAAGTATTTGGAAAACGTTAACAAGG 59.297 33.333 0.00 0.00 38.66 3.61
486 487 8.623310 ACAAGTATTTGGAAAACGTTAACAAG 57.377 30.769 0.00 0.00 38.66 3.16
487 488 8.983307 AACAAGTATTTGGAAAACGTTAACAA 57.017 26.923 0.00 4.65 38.66 2.83
488 489 8.242053 TGAACAAGTATTTGGAAAACGTTAACA 58.758 29.630 0.00 0.00 38.66 2.41
489 490 8.617761 TGAACAAGTATTTGGAAAACGTTAAC 57.382 30.769 0.00 0.00 38.66 2.01
490 491 9.804758 ATTGAACAAGTATTTGGAAAACGTTAA 57.195 25.926 0.00 0.00 38.66 2.01
492 493 9.974980 ATATTGAACAAGTATTTGGAAAACGTT 57.025 25.926 0.00 0.00 38.66 3.99
493 494 9.974980 AATATTGAACAAGTATTTGGAAAACGT 57.025 25.926 2.81 0.00 38.66 3.99
674 675 8.754096 ACGTTTTCTGTTTTCGTTTTTACTTTT 58.246 25.926 0.00 0.00 0.00 2.27
675 676 8.284557 ACGTTTTCTGTTTTCGTTTTTACTTT 57.715 26.923 0.00 0.00 0.00 2.66
676 677 7.856492 ACGTTTTCTGTTTTCGTTTTTACTT 57.144 28.000 0.00 0.00 0.00 2.24
677 678 7.856492 AACGTTTTCTGTTTTCGTTTTTACT 57.144 28.000 0.00 0.00 40.87 2.24
678 679 9.434692 GTTAACGTTTTCTGTTTTCGTTTTTAC 57.565 29.630 5.91 1.25 42.93 2.01
679 680 9.173939 TGTTAACGTTTTCTGTTTTCGTTTTTA 57.826 25.926 5.91 0.00 42.93 1.52
680 681 8.058916 TGTTAACGTTTTCTGTTTTCGTTTTT 57.941 26.923 5.91 0.00 42.93 1.94
681 682 7.620397 TGTTAACGTTTTCTGTTTTCGTTTT 57.380 28.000 5.91 0.00 42.93 2.43
682 683 7.620397 TTGTTAACGTTTTCTGTTTTCGTTT 57.380 28.000 5.91 0.00 42.93 3.60
683 684 7.620397 TTTGTTAACGTTTTCTGTTTTCGTT 57.380 28.000 5.91 0.00 44.64 3.85
684 685 7.492498 GTTTTGTTAACGTTTTCTGTTTTCGT 58.508 30.769 5.91 0.00 36.31 3.85
685 686 6.665493 CGTTTTGTTAACGTTTTCTGTTTTCG 59.335 34.615 5.91 0.00 38.69 3.46
686 687 7.889051 CGTTTTGTTAACGTTTTCTGTTTTC 57.111 32.000 5.91 0.00 38.69 2.29
698 699 7.091338 CGTTTTCTGTTTACGTTTTGTTAACG 58.909 34.615 8.34 8.34 41.75 3.18
699 700 7.927373 ACGTTTTCTGTTTACGTTTTGTTAAC 58.073 30.769 0.00 0.00 45.21 2.01
700 701 9.599322 TTACGTTTTCTGTTTACGTTTTGTTAA 57.401 25.926 4.79 0.00 45.21 2.01
701 702 9.599322 TTTACGTTTTCTGTTTACGTTTTGTTA 57.401 25.926 4.79 0.00 45.21 2.41
702 703 8.416424 GTTTACGTTTTCTGTTTACGTTTTGTT 58.584 29.630 4.79 0.00 45.21 2.83
703 704 7.589221 TGTTTACGTTTTCTGTTTACGTTTTGT 59.411 29.630 4.79 0.00 45.21 2.83
704 705 7.926345 TGTTTACGTTTTCTGTTTACGTTTTG 58.074 30.769 4.79 0.00 45.21 2.44
705 706 8.499514 TTGTTTACGTTTTCTGTTTACGTTTT 57.500 26.923 4.79 0.00 45.21 2.43
706 707 8.499514 TTTGTTTACGTTTTCTGTTTACGTTT 57.500 26.923 4.79 0.00 45.21 3.60
707 708 8.672214 ATTTGTTTACGTTTTCTGTTTACGTT 57.328 26.923 4.79 0.00 45.21 3.99
771 772 9.465985 TCTGTTTTCTGTTTTCGTTTTTACTTT 57.534 25.926 0.00 0.00 0.00 2.66
772 773 9.465985 TTCTGTTTTCTGTTTTCGTTTTTACTT 57.534 25.926 0.00 0.00 0.00 2.24
773 774 9.465985 TTTCTGTTTTCTGTTTTCGTTTTTACT 57.534 25.926 0.00 0.00 0.00 2.24
776 777 7.790216 CGTTTTCTGTTTTCTGTTTTCGTTTTT 59.210 29.630 0.00 0.00 0.00 1.94
777 778 7.043258 ACGTTTTCTGTTTTCTGTTTTCGTTTT 60.043 29.630 0.00 0.00 0.00 2.43
778 779 6.418523 ACGTTTTCTGTTTTCTGTTTTCGTTT 59.581 30.769 0.00 0.00 0.00 3.60
779 780 5.916320 ACGTTTTCTGTTTTCTGTTTTCGTT 59.084 32.000 0.00 0.00 0.00 3.85
780 781 5.454520 ACGTTTTCTGTTTTCTGTTTTCGT 58.545 33.333 0.00 0.00 0.00 3.85
781 782 5.985526 ACGTTTTCTGTTTTCTGTTTTCG 57.014 34.783 0.00 0.00 0.00 3.46
824 825 4.437587 AGCATGGGAGGCCACAGC 62.438 66.667 5.01 6.94 38.76 4.40
825 826 2.124403 GAGCATGGGAGGCCACAG 60.124 66.667 5.01 0.00 0.00 3.66
826 827 4.100084 CGAGCATGGGAGGCCACA 62.100 66.667 5.01 0.29 0.00 4.17
827 828 4.101448 ACGAGCATGGGAGGCCAC 62.101 66.667 5.01 0.00 0.00 5.01
828 829 4.100084 CACGAGCATGGGAGGCCA 62.100 66.667 5.01 0.00 0.00 5.36
829 830 4.864334 CCACGAGCATGGGAGGCC 62.864 72.222 0.00 0.00 35.95 5.19
830 831 4.101448 ACCACGAGCATGGGAGGC 62.101 66.667 6.62 0.00 44.81 4.70
831 832 2.187946 GACCACGAGCATGGGAGG 59.812 66.667 6.62 0.00 44.81 4.30
832 833 2.187946 GGACCACGAGCATGGGAG 59.812 66.667 6.62 0.00 44.81 4.30
866 867 3.760673 CGAGTCTGTCGCTGAAGC 58.239 61.111 0.00 0.00 43.03 3.86
874 875 2.048127 GGTGGGCACGAGTCTGTC 60.048 66.667 0.00 0.00 0.00 3.51
875 876 1.978455 TTTGGTGGGCACGAGTCTGT 61.978 55.000 0.00 0.00 0.00 3.41
876 877 1.227823 TTTGGTGGGCACGAGTCTG 60.228 57.895 0.00 0.00 0.00 3.51
877 878 1.071471 CTTTGGTGGGCACGAGTCT 59.929 57.895 0.00 0.00 0.00 3.24
878 879 0.951040 CTCTTTGGTGGGCACGAGTC 60.951 60.000 0.00 0.00 0.00 3.36
879 880 1.071471 CTCTTTGGTGGGCACGAGT 59.929 57.895 0.00 0.00 0.00 4.18
880 881 2.328099 GCTCTTTGGTGGGCACGAG 61.328 63.158 0.00 0.00 0.00 4.18
881 882 2.281484 GCTCTTTGGTGGGCACGA 60.281 61.111 0.00 0.00 0.00 4.35
882 883 3.365265 GGCTCTTTGGTGGGCACG 61.365 66.667 0.00 0.00 0.00 5.34
883 884 2.991540 GGGCTCTTTGGTGGGCAC 60.992 66.667 0.00 0.00 0.00 5.01
909 910 1.285950 GCTGGGCCGAAACAAGAAC 59.714 57.895 0.00 0.00 0.00 3.01
913 914 3.283684 CGTGCTGGGCCGAAACAA 61.284 61.111 0.00 0.00 0.00 2.83
933 934 3.003480 GTTCGATTGGGTTTCTCTGGAG 58.997 50.000 0.00 0.00 0.00 3.86
1024 1025 2.297033 GCTGTGGGAAATTTGCTTCTCA 59.703 45.455 9.70 0.92 33.29 3.27
1037 1038 1.201429 GGAGGAGGAAAGCTGTGGGA 61.201 60.000 0.00 0.00 0.00 4.37
1085 1086 2.666098 GGAGCGGGCTAGGGTTTCA 61.666 63.158 0.00 0.00 0.00 2.69
1268 1269 3.590824 CCTGAATTGGCACCGGAC 58.409 61.111 9.46 0.00 0.00 4.79
1358 1359 2.356069 GTCCTTCATGAAATCCGGAAGC 59.644 50.000 9.01 0.66 36.34 3.86
1634 1635 1.453197 CTTGGGTGGGCGGTAATCC 60.453 63.158 0.00 0.00 0.00 3.01
1884 1885 1.003108 GCAGCCTCTAACGCTTCTTC 58.997 55.000 0.00 0.00 33.17 2.87
2286 2287 2.103736 GCTACCACTACCGTCGCC 59.896 66.667 0.00 0.00 0.00 5.54
2287 2288 1.074872 GTTGCTACCACTACCGTCGC 61.075 60.000 0.00 0.00 0.00 5.19
2288 2289 0.524862 AGTTGCTACCACTACCGTCG 59.475 55.000 0.00 0.00 0.00 5.12
2289 2290 1.542915 TGAGTTGCTACCACTACCGTC 59.457 52.381 0.00 0.00 0.00 4.79
2290 2291 1.271656 GTGAGTTGCTACCACTACCGT 59.728 52.381 10.82 0.00 0.00 4.83
2291 2292 1.403780 GGTGAGTTGCTACCACTACCG 60.404 57.143 15.29 0.00 36.94 4.02
2292 2293 1.066358 GGGTGAGTTGCTACCACTACC 60.066 57.143 15.29 9.70 38.74 3.18
2293 2294 1.900486 AGGGTGAGTTGCTACCACTAC 59.100 52.381 15.29 10.79 38.74 2.73
2294 2295 1.899814 CAGGGTGAGTTGCTACCACTA 59.100 52.381 15.29 0.00 38.74 2.74
2656 2663 2.496070 GCAGAGTGGTACATCTGTGGTA 59.504 50.000 17.93 0.00 44.52 3.25
2832 2839 2.203538 AGCAGTTTGGCCAGGTGG 60.204 61.111 5.11 0.00 38.53 4.61
3106 3113 2.027192 GGATCAACACTAGCTGGTGGAA 60.027 50.000 30.64 17.29 38.26 3.53
3107 3114 1.555075 GGATCAACACTAGCTGGTGGA 59.445 52.381 30.64 20.48 38.26 4.02
3398 3405 5.256474 ACATGTAAACTGAAATGGAGGGAG 58.744 41.667 0.00 0.00 0.00 4.30
3399 3406 5.253330 GACATGTAAACTGAAATGGAGGGA 58.747 41.667 0.00 0.00 0.00 4.20
3400 3407 4.399303 GGACATGTAAACTGAAATGGAGGG 59.601 45.833 0.00 0.00 0.00 4.30
3401 3408 5.256474 AGGACATGTAAACTGAAATGGAGG 58.744 41.667 0.00 0.00 0.00 4.30
3402 3409 7.467811 GCATAGGACATGTAAACTGAAATGGAG 60.468 40.741 0.00 0.00 0.00 3.86
3403 3410 6.318648 GCATAGGACATGTAAACTGAAATGGA 59.681 38.462 0.00 0.00 0.00 3.41
3404 3411 6.498304 GCATAGGACATGTAAACTGAAATGG 58.502 40.000 0.00 0.00 0.00 3.16
3405 3412 6.183360 ACGCATAGGACATGTAAACTGAAATG 60.183 38.462 0.00 0.58 0.00 2.32
3406 3413 5.880332 ACGCATAGGACATGTAAACTGAAAT 59.120 36.000 0.00 0.00 0.00 2.17
3407 3414 5.242434 ACGCATAGGACATGTAAACTGAAA 58.758 37.500 0.00 0.00 0.00 2.69
3408 3415 4.827692 ACGCATAGGACATGTAAACTGAA 58.172 39.130 0.00 0.00 0.00 3.02
3409 3416 4.465632 ACGCATAGGACATGTAAACTGA 57.534 40.909 0.00 0.00 0.00 3.41
3410 3417 6.365247 GGTATACGCATAGGACATGTAAACTG 59.635 42.308 0.00 0.00 0.00 3.16
3411 3418 6.267014 AGGTATACGCATAGGACATGTAAACT 59.733 38.462 0.00 0.00 0.00 2.66
3412 3419 6.453092 AGGTATACGCATAGGACATGTAAAC 58.547 40.000 0.00 0.00 0.00 2.01
3413 3420 6.659745 AGGTATACGCATAGGACATGTAAA 57.340 37.500 0.00 0.00 0.00 2.01
3414 3421 6.376299 CCTAGGTATACGCATAGGACATGTAA 59.624 42.308 16.76 0.00 37.57 2.41
3415 3422 5.884232 CCTAGGTATACGCATAGGACATGTA 59.116 44.000 16.76 0.00 37.57 2.29
3416 3423 4.705507 CCTAGGTATACGCATAGGACATGT 59.294 45.833 16.76 0.00 37.57 3.21
3417 3424 4.705507 ACCTAGGTATACGCATAGGACATG 59.294 45.833 23.78 0.00 38.53 3.21
3418 3425 4.931914 ACCTAGGTATACGCATAGGACAT 58.068 43.478 23.78 8.07 38.53 3.06
3419 3426 4.377762 ACCTAGGTATACGCATAGGACA 57.622 45.455 23.78 0.00 38.53 4.02
3420 3427 4.617762 GCAACCTAGGTATACGCATAGGAC 60.618 50.000 23.78 13.98 38.53 3.85
3421 3428 3.508793 GCAACCTAGGTATACGCATAGGA 59.491 47.826 23.78 0.00 38.53 2.94
3422 3429 3.368116 GGCAACCTAGGTATACGCATAGG 60.368 52.174 16.67 18.75 40.58 2.57
3423 3430 3.257375 TGGCAACCTAGGTATACGCATAG 59.743 47.826 16.67 0.00 0.00 2.23
3424 3431 3.232662 TGGCAACCTAGGTATACGCATA 58.767 45.455 16.67 6.29 0.00 3.14
3425 3432 2.043992 TGGCAACCTAGGTATACGCAT 58.956 47.619 16.67 0.00 0.00 4.73
3426 3433 1.487300 TGGCAACCTAGGTATACGCA 58.513 50.000 16.67 5.50 0.00 5.24
3427 3434 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
3428 3435 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
3429 3436 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
3430 3437 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
3431 3438 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
3432 3439 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
3433 3440 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
3434 3441 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
3435 3442 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
3436 3443 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
3437 3444 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
3438 3445 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
3541 3548 9.513906 TCAATTTGATCAACCTAATACAAGTCA 57.486 29.630 7.89 0.00 0.00 3.41
3542 3549 9.774742 GTCAATTTGATCAACCTAATACAAGTC 57.225 33.333 7.89 0.00 0.00 3.01
3543 3550 8.450964 CGTCAATTTGATCAACCTAATACAAGT 58.549 33.333 7.89 0.00 0.00 3.16
3544 3551 8.664798 TCGTCAATTTGATCAACCTAATACAAG 58.335 33.333 7.89 0.00 0.00 3.16
3545 3552 8.447833 GTCGTCAATTTGATCAACCTAATACAA 58.552 33.333 7.89 0.00 0.00 2.41
3546 3553 7.065324 GGTCGTCAATTTGATCAACCTAATACA 59.935 37.037 7.89 0.00 0.00 2.29
3547 3554 7.280205 AGGTCGTCAATTTGATCAACCTAATAC 59.720 37.037 20.14 1.91 35.24 1.89
3548 3555 7.335627 AGGTCGTCAATTTGATCAACCTAATA 58.664 34.615 20.14 0.00 35.24 0.98
3549 3556 6.180472 AGGTCGTCAATTTGATCAACCTAAT 58.820 36.000 20.14 0.00 35.24 1.73
3550 3557 5.556915 AGGTCGTCAATTTGATCAACCTAA 58.443 37.500 20.14 0.00 35.24 2.69
3551 3558 5.160607 AGGTCGTCAATTTGATCAACCTA 57.839 39.130 20.14 0.00 35.24 3.08
3552 3559 4.021102 AGGTCGTCAATTTGATCAACCT 57.979 40.909 7.89 17.69 33.46 3.50
3553 3560 4.332819 CCTAGGTCGTCAATTTGATCAACC 59.667 45.833 7.89 14.93 0.00 3.77
3554 3561 4.332819 CCCTAGGTCGTCAATTTGATCAAC 59.667 45.833 7.89 0.00 0.00 3.18
3555 3562 4.513442 CCCTAGGTCGTCAATTTGATCAA 58.487 43.478 8.29 3.38 0.00 2.57
3556 3563 3.118408 CCCCTAGGTCGTCAATTTGATCA 60.118 47.826 8.29 0.00 0.00 2.92
3557 3564 3.118371 ACCCCTAGGTCGTCAATTTGATC 60.118 47.826 8.29 0.00 46.45 2.92
3558 3565 2.844348 ACCCCTAGGTCGTCAATTTGAT 59.156 45.455 8.29 0.00 46.45 2.57
3559 3566 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
3560 3567 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
3561 3568 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
3562 3569 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
3563 3570 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
3564 3571 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
3565 3572 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
3566 3573 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
3567 3574 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
3568 3575 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
3569 3576 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
3571 3578 3.454573 TGTGCGCGTACCCCTAGG 61.455 66.667 24.54 0.06 40.04 3.02
3572 3579 2.202703 GTGTGCGCGTACCCCTAG 60.203 66.667 24.54 0.00 0.00 3.02
3573 3580 3.762247 GGTGTGCGCGTACCCCTA 61.762 66.667 24.54 2.60 0.00 3.53
3577 3584 2.768503 TTACAGGGTGTGCGCGTACC 62.769 60.000 24.54 20.91 36.21 3.34
3578 3585 0.945265 TTTACAGGGTGTGCGCGTAC 60.945 55.000 21.02 21.02 0.00 3.67
3579 3586 0.945265 GTTTACAGGGTGTGCGCGTA 60.945 55.000 8.43 0.00 0.00 4.42
3580 3587 2.109387 TTTACAGGGTGTGCGCGT 59.891 55.556 8.43 0.00 0.00 6.01
3581 3588 1.959226 AGTTTACAGGGTGTGCGCG 60.959 57.895 0.00 0.00 0.00 6.86
3582 3589 0.882927 TCAGTTTACAGGGTGTGCGC 60.883 55.000 0.00 0.00 0.00 6.09
3583 3590 1.808411 ATCAGTTTACAGGGTGTGCG 58.192 50.000 0.00 0.00 0.00 5.34
3584 3591 3.146066 TCAATCAGTTTACAGGGTGTGC 58.854 45.455 0.00 0.00 0.00 4.57
3585 3592 4.641396 TCTCAATCAGTTTACAGGGTGTG 58.359 43.478 0.00 0.00 0.00 3.82
3586 3593 4.263068 CCTCTCAATCAGTTTACAGGGTGT 60.263 45.833 0.00 0.00 0.00 4.16
3587 3594 4.256920 CCTCTCAATCAGTTTACAGGGTG 58.743 47.826 0.00 0.00 0.00 4.61
3588 3595 3.264450 CCCTCTCAATCAGTTTACAGGGT 59.736 47.826 0.00 0.00 35.49 4.34
3589 3596 3.519510 TCCCTCTCAATCAGTTTACAGGG 59.480 47.826 0.00 0.00 40.83 4.45
3590 3597 4.223923 ACTCCCTCTCAATCAGTTTACAGG 59.776 45.833 0.00 0.00 0.00 4.00
3591 3598 5.413309 ACTCCCTCTCAATCAGTTTACAG 57.587 43.478 0.00 0.00 0.00 2.74
3592 3599 6.897966 AGATACTCCCTCTCAATCAGTTTACA 59.102 38.462 0.00 0.00 0.00 2.41
3593 3600 7.354751 AGATACTCCCTCTCAATCAGTTTAC 57.645 40.000 0.00 0.00 0.00 2.01
3594 3601 7.979786 AAGATACTCCCTCTCAATCAGTTTA 57.020 36.000 0.00 0.00 0.00 2.01
3595 3602 6.882768 AAGATACTCCCTCTCAATCAGTTT 57.117 37.500 0.00 0.00 0.00 2.66
3596 3603 6.882768 AAAGATACTCCCTCTCAATCAGTT 57.117 37.500 0.00 0.00 0.00 3.16
3597 3604 6.882768 AAAAGATACTCCCTCTCAATCAGT 57.117 37.500 0.00 0.00 0.00 3.41
3598 3605 7.108847 ACAAAAAGATACTCCCTCTCAATCAG 58.891 38.462 0.00 0.00 0.00 2.90
3599 3606 7.020827 ACAAAAAGATACTCCCTCTCAATCA 57.979 36.000 0.00 0.00 0.00 2.57
3600 3607 9.620259 AATACAAAAAGATACTCCCTCTCAATC 57.380 33.333 0.00 0.00 0.00 2.67
3601 3608 9.981460 AAATACAAAAAGATACTCCCTCTCAAT 57.019 29.630 0.00 0.00 0.00 2.57
3602 3609 9.807921 AAAATACAAAAAGATACTCCCTCTCAA 57.192 29.630 0.00 0.00 0.00 3.02
3734 3741 7.402054 TGGGATCAAGTTCACATAACAATAGT 58.598 34.615 0.00 0.00 0.00 2.12
3814 3821 2.485426 ACATGAAACGGAAGACATGCAG 59.515 45.455 0.00 0.00 40.75 4.41
3932 3939 7.646446 TGATGCAAGAATTTTGATGACAAAG 57.354 32.000 0.00 0.00 44.97 2.77
3992 4013 4.216902 TGAAACTGGTCAGCATCAGATTTG 59.783 41.667 0.00 0.00 35.20 2.32
3993 4014 4.401022 TGAAACTGGTCAGCATCAGATTT 58.599 39.130 0.00 0.00 35.20 2.17
3994 4015 4.025040 TGAAACTGGTCAGCATCAGATT 57.975 40.909 0.00 0.00 35.20 2.40
3995 4016 3.708403 TGAAACTGGTCAGCATCAGAT 57.292 42.857 0.00 0.00 35.20 2.90
4001 4022 2.936919 ACTCATGAAACTGGTCAGCA 57.063 45.000 0.00 0.00 0.00 4.41
4009 4030 8.738645 ACTTCACTAAAAGAACTCATGAAACT 57.261 30.769 0.00 0.00 0.00 2.66
4054 4075 4.862371 AGTACTTCCAAAAAGGGAACACA 58.138 39.130 0.00 0.00 41.92 3.72
4070 4091 7.899973 TGTATTTAGGAACGGAAGAAGTACTT 58.100 34.615 8.13 8.13 42.03 2.24
4079 4101 7.989416 AAATGACTTGTATTTAGGAACGGAA 57.011 32.000 0.00 0.00 0.00 4.30
4374 4396 0.465460 GCCCAATGAGCCGGTAATGA 60.465 55.000 1.90 0.00 0.00 2.57
4421 4443 7.883833 AGTAAAGGGTTCCTTCAAATAGTTCTC 59.116 37.037 0.00 0.00 43.92 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.