Multiple sequence alignment - TraesCS2A01G282300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G282300 chr2A 100.000 3722 0 0 1 3722 471815384 471819105 0.000000e+00 6874.0
1 TraesCS2A01G282300 chr2A 94.258 209 12 0 3501 3709 755071985 755071777 1.670000e-83 320.0
2 TraesCS2A01G282300 chr2A 92.891 211 13 2 3501 3709 778611099 778611309 4.670000e-79 305.0
3 TraesCS2A01G282300 chr2B 91.557 2582 86 49 1 2527 420201727 420204231 0.000000e+00 3439.0
4 TraesCS2A01G282300 chr2B 84.254 724 40 31 2779 3491 420204454 420205114 4.050000e-179 638.0
5 TraesCS2A01G282300 chr2B 92.857 210 14 1 3501 3709 225229222 225229431 1.680000e-78 303.0
6 TraesCS2A01G282300 chr2B 84.066 182 6 9 2598 2766 420204230 420204401 1.790000e-33 154.0
7 TraesCS2A01G282300 chr2B 86.076 79 2 3 2528 2597 655525291 655525213 3.990000e-10 76.8
8 TraesCS2A01G282300 chr2D 93.412 2201 76 28 367 2527 353349572 353351743 0.000000e+00 3197.0
9 TraesCS2A01G282300 chr2D 86.364 770 41 18 2779 3500 353351971 353352724 0.000000e+00 782.0
10 TraesCS2A01G282300 chr2D 82.011 189 11 8 2591 2766 353351740 353351918 5.010000e-29 139.0
11 TraesCS2A01G282300 chr4A 93.839 211 12 1 3500 3709 736486695 736486905 2.160000e-82 316.0
12 TraesCS2A01G282300 chr4A 92.488 213 12 2 3501 3709 615201742 615201954 6.040000e-78 302.0
13 TraesCS2A01G282300 chr3A 93.780 209 13 0 3501 3709 639242199 639242407 7.760000e-82 315.0
14 TraesCS2A01G282300 chr3A 80.696 316 57 4 1728 2041 672869392 672869079 3.710000e-60 243.0
15 TraesCS2A01G282300 chr5A 92.958 213 14 1 3498 3709 236009844 236010056 3.610000e-80 309.0
16 TraesCS2A01G282300 chr5A 87.805 82 1 1 2526 2598 673731822 673731741 1.840000e-13 87.9
17 TraesCS2A01G282300 chr5A 100.000 28 0 0 2219 2246 7697326 7697353 7.000000e-03 52.8
18 TraesCS2A01G282300 chr6A 92.523 214 15 1 3497 3709 57147059 57147272 4.670000e-79 305.0
19 TraesCS2A01G282300 chr6A 91.981 212 14 2 3501 3709 24282858 24282647 1.010000e-75 294.0
20 TraesCS2A01G282300 chr3D 82.019 317 51 5 1728 2041 537557642 537557329 7.930000e-67 265.0
21 TraesCS2A01G282300 chr7B 98.000 50 1 0 2526 2575 166587173 166587124 1.840000e-13 87.9
22 TraesCS2A01G282300 chr7B 87.654 81 1 1 2527 2598 13715251 13715171 6.620000e-13 86.1
23 TraesCS2A01G282300 chr6B 93.333 60 2 2 2517 2575 683230137 683230079 1.840000e-13 87.9
24 TraesCS2A01G282300 chr6B 97.959 49 1 0 2527 2575 159054322 159054274 6.620000e-13 86.1
25 TraesCS2A01G282300 chrUn 87.654 81 1 1 2527 2598 50587056 50586976 6.620000e-13 86.1
26 TraesCS2A01G282300 chrUn 86.905 84 2 1 2524 2598 278339138 278339221 6.620000e-13 86.1
27 TraesCS2A01G282300 chrUn 86.905 84 2 1 2524 2598 278346415 278346498 6.620000e-13 86.1
28 TraesCS2A01G282300 chr1A 92.982 57 2 2 2519 2575 572005310 572005364 8.570000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G282300 chr2A 471815384 471819105 3721 False 6874.000000 6874 100.000000 1 3722 1 chr2A.!!$F1 3721
1 TraesCS2A01G282300 chr2B 420201727 420205114 3387 False 1410.333333 3439 86.625667 1 3491 3 chr2B.!!$F2 3490
2 TraesCS2A01G282300 chr2D 353349572 353352724 3152 False 1372.666667 3197 87.262333 367 3500 3 chr2D.!!$F1 3133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 684 0.327924 ACAATCATGAACGGCCAGGA 59.672 50.0 2.24 0.0 0.0 3.86 F
1195 1228 0.179062 CCTGCTACTCCTGCCATGAC 60.179 60.0 0.00 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 2662 0.179001 AAAGAAACGGGACAGGTGGG 60.179 55.0 0.0 0.0 0.0 4.61 R
2805 2934 0.027586 AACTGCACAACTTTCGACGC 59.972 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.567164 ACACCAAAAGAGACAGAGCATTG 59.433 43.478 0.00 0.00 0.00 2.82
58 59 4.276926 ACCAAAAGAGACAGAGCATTGAAC 59.723 41.667 0.00 0.00 0.00 3.18
80 81 8.739039 TGAACCTCAATTAATAGACAATGGTTG 58.261 33.333 0.00 0.00 34.70 3.77
106 107 7.912250 GCAAACATGTGAAATAGTATCTCCAAG 59.088 37.037 0.00 0.00 0.00 3.61
161 165 2.035530 AGAGATAGCAAGCAAGCACC 57.964 50.000 3.19 0.00 36.85 5.01
174 178 1.135803 CAAGCACCGTGGTTAAATCCG 60.136 52.381 15.30 0.00 35.69 4.18
201 205 5.854338 CACCATTTTCATTTTCAATGCAAGC 59.146 36.000 0.00 0.00 0.00 4.01
204 208 6.580791 CCATTTTCATTTTCAATGCAAGCAAG 59.419 34.615 0.00 0.00 0.00 4.01
344 348 5.388111 CCAATGCAAGATATATGTCAAGCG 58.612 41.667 2.04 0.00 0.00 4.68
416 420 2.791383 TTTGAGACGCCAAAACCATG 57.209 45.000 0.00 0.00 33.56 3.66
432 445 7.363705 CCAAAACCATGTATAATCCAGCAAGAA 60.364 37.037 0.00 0.00 0.00 2.52
433 446 7.716799 AAACCATGTATAATCCAGCAAGAAA 57.283 32.000 0.00 0.00 0.00 2.52
434 447 6.949352 ACCATGTATAATCCAGCAAGAAAG 57.051 37.500 0.00 0.00 0.00 2.62
435 448 6.662755 ACCATGTATAATCCAGCAAGAAAGA 58.337 36.000 0.00 0.00 0.00 2.52
436 449 7.118723 ACCATGTATAATCCAGCAAGAAAGAA 58.881 34.615 0.00 0.00 0.00 2.52
437 450 7.615365 ACCATGTATAATCCAGCAAGAAAGAAA 59.385 33.333 0.00 0.00 0.00 2.52
438 451 8.133627 CCATGTATAATCCAGCAAGAAAGAAAG 58.866 37.037 0.00 0.00 0.00 2.62
439 452 8.896744 CATGTATAATCCAGCAAGAAAGAAAGA 58.103 33.333 0.00 0.00 0.00 2.52
480 493 3.008594 TCACCAACCAACCCTATGTACTG 59.991 47.826 0.00 0.00 0.00 2.74
481 494 2.983898 ACCAACCAACCCTATGTACTGT 59.016 45.455 0.00 0.00 0.00 3.55
483 496 4.019950 ACCAACCAACCCTATGTACTGTAC 60.020 45.833 10.98 10.98 0.00 2.90
489 502 6.323225 ACCAACCCTATGTACTGTACTACATC 59.677 42.308 17.98 0.00 38.18 3.06
588 603 3.302870 GCAGCAACAAATGAAGCAAACAG 60.303 43.478 0.00 0.00 32.55 3.16
669 684 0.327924 ACAATCATGAACGGCCAGGA 59.672 50.000 2.24 0.00 0.00 3.86
670 685 1.019673 CAATCATGAACGGCCAGGAG 58.980 55.000 2.24 0.00 30.01 3.69
846 865 2.283894 CCCCAAGCAACCCCCTTC 60.284 66.667 0.00 0.00 0.00 3.46
847 866 2.283894 CCCAAGCAACCCCCTTCC 60.284 66.667 0.00 0.00 0.00 3.46
848 867 2.283894 CCAAGCAACCCCCTTCCC 60.284 66.667 0.00 0.00 0.00 3.97
849 868 2.854076 CAAGCAACCCCCTTCCCT 59.146 61.111 0.00 0.00 0.00 4.20
850 869 1.304464 CAAGCAACCCCCTTCCCTC 60.304 63.158 0.00 0.00 0.00 4.30
851 870 2.548547 AAGCAACCCCCTTCCCTCC 61.549 63.158 0.00 0.00 0.00 4.30
852 871 2.941583 GCAACCCCCTTCCCTCCT 60.942 66.667 0.00 0.00 0.00 3.69
853 872 2.985116 GCAACCCCCTTCCCTCCTC 61.985 68.421 0.00 0.00 0.00 3.71
854 873 1.229984 CAACCCCCTTCCCTCCTCT 60.230 63.158 0.00 0.00 0.00 3.69
855 874 1.083141 AACCCCCTTCCCTCCTCTC 59.917 63.158 0.00 0.00 0.00 3.20
893 912 2.668550 GCGTCCCTGTTGACCACC 60.669 66.667 0.00 0.00 31.35 4.61
941 969 0.332972 GGGCACATCCTCCTTCCTTT 59.667 55.000 0.00 0.00 34.39 3.11
942 970 1.683319 GGGCACATCCTCCTTCCTTTC 60.683 57.143 0.00 0.00 34.39 2.62
943 971 1.683319 GGCACATCCTCCTTCCTTTCC 60.683 57.143 0.00 0.00 0.00 3.13
945 973 2.291217 GCACATCCTCCTTCCTTTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
947 975 2.989571 ACATCCTCCTTCCTTTCCTTGT 59.010 45.455 0.00 0.00 0.00 3.16
948 976 3.245052 ACATCCTCCTTCCTTTCCTTGTG 60.245 47.826 0.00 0.00 0.00 3.33
949 977 2.418669 TCCTCCTTCCTTTCCTTGTGT 58.581 47.619 0.00 0.00 0.00 3.72
1053 1081 2.550978 CATTACGGACACACCATCTCC 58.449 52.381 0.00 0.00 38.90 3.71
1058 1086 1.280457 GGACACACCATCTCCCTCTT 58.720 55.000 0.00 0.00 38.79 2.85
1059 1087 1.630878 GGACACACCATCTCCCTCTTT 59.369 52.381 0.00 0.00 38.79 2.52
1063 1091 2.836981 CACACCATCTCCCTCTTTCTCT 59.163 50.000 0.00 0.00 0.00 3.10
1131 1159 4.357947 ACAGACGCCGCATCGTGT 62.358 61.111 4.92 0.00 43.42 4.49
1132 1160 3.842126 CAGACGCCGCATCGTGTG 61.842 66.667 9.74 9.74 44.90 3.82
1195 1228 0.179062 CCTGCTACTCCTGCCATGAC 60.179 60.000 0.00 0.00 0.00 3.06
1253 1289 2.764128 GGAGGACGGCCATGGAGA 60.764 66.667 18.40 0.00 36.29 3.71
1394 1430 1.200483 CATCATGACGTACGTGCCTC 58.800 55.000 28.16 11.94 35.66 4.70
1395 1431 1.103803 ATCATGACGTACGTGCCTCT 58.896 50.000 28.16 4.53 35.66 3.69
1396 1432 0.885879 TCATGACGTACGTGCCTCTT 59.114 50.000 28.16 6.52 35.66 2.85
1402 1438 1.200948 ACGTACGTGCCTCTTTACTCC 59.799 52.381 22.14 0.00 0.00 3.85
1405 1441 1.810030 CGTGCCTCTTTACTCCGCC 60.810 63.158 0.00 0.00 0.00 6.13
1673 1731 2.635338 GCAACCGTGTTCCCGTTC 59.365 61.111 0.00 0.00 0.00 3.95
1674 1732 1.890510 GCAACCGTGTTCCCGTTCT 60.891 57.895 0.00 0.00 0.00 3.01
1677 1735 1.003223 CAACCGTGTTCCCGTTCTTTC 60.003 52.381 0.00 0.00 0.00 2.62
1679 1737 0.250166 CCGTGTTCCCGTTCTTTCCT 60.250 55.000 0.00 0.00 0.00 3.36
2094 2168 3.011517 GGCAAGGCCTCCAGGAGA 61.012 66.667 19.21 0.00 46.69 3.71
2525 2599 2.506438 GTCGCCGTGTCCTAGCAC 60.506 66.667 0.00 0.00 36.12 4.40
2526 2600 3.755628 TCGCCGTGTCCTAGCACC 61.756 66.667 0.00 0.00 36.08 5.01
2528 2602 4.814294 GCCGTGTCCTAGCACCGG 62.814 72.222 0.00 0.00 36.08 5.28
2529 2603 3.066190 CCGTGTCCTAGCACCGGA 61.066 66.667 9.46 0.00 36.14 5.14
2533 2607 2.799371 GTCCTAGCACCGGACTCG 59.201 66.667 9.46 0.56 45.87 4.18
2544 2618 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
2545 2619 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
2546 2620 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
2547 2621 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
2548 2622 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
2549 2623 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
2550 2624 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
2551 2625 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
2552 2626 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
2553 2627 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
2556 2630 2.125512 CCTGACGTACTGCAGGGC 60.126 66.667 19.93 9.18 46.24 5.19
2557 2631 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
2558 2632 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
2568 2642 4.641645 CAGGGCGCAGTTGGGTCA 62.642 66.667 10.83 0.00 33.95 4.02
2569 2643 3.650950 AGGGCGCAGTTGGGTCAT 61.651 61.111 10.83 0.00 33.95 3.06
2570 2644 2.676471 GGGCGCAGTTGGGTCATT 60.676 61.111 10.83 0.00 33.95 2.57
2571 2645 2.568090 GGCGCAGTTGGGTCATTG 59.432 61.111 10.83 0.00 32.43 2.82
2572 2646 1.971167 GGCGCAGTTGGGTCATTGA 60.971 57.895 10.83 0.00 32.43 2.57
2573 2647 1.210155 GCGCAGTTGGGTCATTGAC 59.790 57.895 0.30 8.34 0.00 3.18
2574 2648 1.514678 GCGCAGTTGGGTCATTGACA 61.515 55.000 18.09 0.00 33.68 3.58
2575 2649 0.950836 CGCAGTTGGGTCATTGACAA 59.049 50.000 18.09 2.60 33.68 3.18
2576 2650 1.334960 CGCAGTTGGGTCATTGACAAC 60.335 52.381 18.09 13.93 43.50 3.32
2580 2654 2.742774 GTTGGGTCATTGACAACTTGC 58.257 47.619 18.09 0.01 40.83 4.01
2581 2655 2.362077 GTTGGGTCATTGACAACTTGCT 59.638 45.455 18.09 0.00 40.83 3.91
2582 2656 2.665165 TGGGTCATTGACAACTTGCTT 58.335 42.857 18.09 0.00 33.68 3.91
2583 2657 3.030291 TGGGTCATTGACAACTTGCTTT 58.970 40.909 18.09 0.00 33.68 3.51
2584 2658 3.068024 TGGGTCATTGACAACTTGCTTTC 59.932 43.478 18.09 0.00 33.68 2.62
2585 2659 3.300009 GGTCATTGACAACTTGCTTTCG 58.700 45.455 18.09 0.00 33.68 3.46
2586 2660 3.300009 GTCATTGACAACTTGCTTTCGG 58.700 45.455 11.93 0.00 32.09 4.30
2587 2661 2.293122 TCATTGACAACTTGCTTTCGGG 59.707 45.455 0.00 0.00 0.00 5.14
2588 2662 0.383949 TTGACAACTTGCTTTCGGGC 59.616 50.000 0.00 0.00 0.00 6.13
2589 2663 1.285950 GACAACTTGCTTTCGGGCC 59.714 57.895 0.00 0.00 0.00 5.80
2590 2664 2.142357 GACAACTTGCTTTCGGGCCC 62.142 60.000 13.57 13.57 0.00 5.80
2591 2665 2.197324 AACTTGCTTTCGGGCCCA 59.803 55.556 24.92 6.15 0.00 5.36
2592 2666 2.200337 AACTTGCTTTCGGGCCCAC 61.200 57.895 24.92 5.64 0.00 4.61
2593 2667 3.373565 CTTGCTTTCGGGCCCACC 61.374 66.667 24.92 4.81 0.00 4.61
2594 2668 3.868200 CTTGCTTTCGGGCCCACCT 62.868 63.158 24.92 0.00 36.97 4.00
2595 2669 4.659172 TGCTTTCGGGCCCACCTG 62.659 66.667 24.92 10.12 44.63 4.00
2596 2670 4.660938 GCTTTCGGGCCCACCTGT 62.661 66.667 24.92 0.00 43.58 4.00
2629 2708 8.264347 TCTTTTATTTTTCTGGCCAGTTCTTTT 58.736 29.630 31.58 15.65 0.00 2.27
2630 2709 8.800370 TTTTATTTTTCTGGCCAGTTCTTTTT 57.200 26.923 31.58 14.15 0.00 1.94
2707 2798 3.740115 AGTCTGGTTACTTGCGAATTGT 58.260 40.909 0.00 0.00 0.00 2.71
2713 2804 7.593644 GTCTGGTTACTTGCGAATTGTTTTTAT 59.406 33.333 0.00 0.00 0.00 1.40
2715 2806 9.400638 CTGGTTACTTGCGAATTGTTTTTATTA 57.599 29.630 0.00 0.00 0.00 0.98
2716 2807 9.915629 TGGTTACTTGCGAATTGTTTTTATTAT 57.084 25.926 0.00 0.00 0.00 1.28
2751 2872 7.923414 AACTTTTATTAACCTGGAGTAGCAG 57.077 36.000 0.00 0.00 0.00 4.24
2805 2934 3.934579 TCGAGATGTGATGTGAAATGTGG 59.065 43.478 0.00 0.00 0.00 4.17
2835 2967 3.131046 AGTTGTGCAGTTTCCCTTCTTTG 59.869 43.478 0.00 0.00 0.00 2.77
2840 2972 1.000171 CAGTTTCCCTTCTTTGCTGGC 60.000 52.381 0.00 0.00 0.00 4.85
2923 3056 1.716503 AGGGAAGTAAATTGGCCTGGT 59.283 47.619 3.32 0.00 0.00 4.00
2930 3063 0.678950 AAATTGGCCTGGTGTTTCCG 59.321 50.000 3.32 0.00 39.52 4.30
2944 3077 4.170256 GTGTTTCCGCTTTGAAGTTCAAA 58.830 39.130 25.48 25.48 43.37 2.69
2946 3079 5.290885 GTGTTTCCGCTTTGAAGTTCAAAAT 59.709 36.000 26.60 0.00 44.69 1.82
2947 3080 6.474102 GTGTTTCCGCTTTGAAGTTCAAAATA 59.526 34.615 26.60 12.82 44.69 1.40
2948 3081 6.474102 TGTTTCCGCTTTGAAGTTCAAAATAC 59.526 34.615 26.60 18.88 44.69 1.89
2949 3082 4.778904 TCCGCTTTGAAGTTCAAAATACG 58.221 39.130 26.60 26.18 44.69 3.06
2950 3083 3.360758 CCGCTTTGAAGTTCAAAATACGC 59.639 43.478 26.60 23.82 44.69 4.42
2951 3084 3.360758 CGCTTTGAAGTTCAAAATACGCC 59.639 43.478 26.60 12.96 44.69 5.68
2952 3085 3.673338 GCTTTGAAGTTCAAAATACGCCC 59.327 43.478 26.60 9.60 44.69 6.13
2953 3086 4.558697 GCTTTGAAGTTCAAAATACGCCCT 60.559 41.667 26.60 0.00 44.69 5.19
2974 3107 2.435059 GGCTTGAGCAGGACGGTC 60.435 66.667 5.24 0.00 44.36 4.79
3006 3141 0.245539 TGCAACCGTAGTAGTCTGCC 59.754 55.000 0.00 0.00 0.00 4.85
3011 3146 0.747283 CCGTAGTAGTCTGCCTCGGT 60.747 60.000 11.29 0.00 33.20 4.69
3017 3152 0.180642 TAGTCTGCCTCGGTCGATCT 59.819 55.000 0.00 0.00 0.00 2.75
3027 3162 4.386245 GTCGATCTCGTGACCAGC 57.614 61.111 0.00 0.00 40.80 4.85
3040 3175 0.962855 GACCAGCAAGAAAGAGGGCC 60.963 60.000 0.00 0.00 0.00 5.80
3043 3178 1.302832 AGCAAGAAAGAGGGCCGTG 60.303 57.895 0.65 0.00 0.00 4.94
3046 3181 1.406887 GCAAGAAAGAGGGCCGTGATA 60.407 52.381 0.65 0.00 0.00 2.15
3061 3196 8.264347 AGGGCCGTGATAAAAATGAAAATAAAT 58.736 29.630 0.00 0.00 0.00 1.40
3062 3197 8.888716 GGGCCGTGATAAAAATGAAAATAAATT 58.111 29.630 0.00 0.00 0.00 1.82
3063 3198 9.701355 GGCCGTGATAAAAATGAAAATAAATTG 57.299 29.630 0.00 0.00 0.00 2.32
3072 3207 9.964303 AAAAATGAAAATAAATTGAAACCCAGC 57.036 25.926 0.00 0.00 0.00 4.85
3073 3208 6.966435 ATGAAAATAAATTGAAACCCAGCG 57.034 33.333 0.00 0.00 0.00 5.18
3074 3209 5.233988 TGAAAATAAATTGAAACCCAGCGG 58.766 37.500 0.00 0.00 0.00 5.52
3075 3210 5.011125 TGAAAATAAATTGAAACCCAGCGGA 59.989 36.000 0.00 0.00 0.00 5.54
3076 3211 4.718940 AATAAATTGAAACCCAGCGGAG 57.281 40.909 0.00 0.00 0.00 4.63
3077 3212 1.995376 AAATTGAAACCCAGCGGAGT 58.005 45.000 0.00 0.00 0.00 3.85
3078 3213 2.871096 AATTGAAACCCAGCGGAGTA 57.129 45.000 0.00 0.00 0.00 2.59
3079 3214 2.403252 ATTGAAACCCAGCGGAGTAG 57.597 50.000 0.00 0.00 0.00 2.57
3080 3215 1.344065 TTGAAACCCAGCGGAGTAGA 58.656 50.000 0.00 0.00 0.00 2.59
3081 3216 0.895530 TGAAACCCAGCGGAGTAGAG 59.104 55.000 0.00 0.00 0.00 2.43
3120 3302 2.092914 GGAAGTGGATTTGGAGGATCGT 60.093 50.000 0.00 0.00 34.37 3.73
3324 3523 1.575922 CATGTGTGTGCGGGACAAG 59.424 57.895 3.20 0.00 35.91 3.16
3341 3540 2.202623 GCAGATCGACGCGTCCTT 60.203 61.111 31.84 20.05 0.00 3.36
3342 3541 2.508891 GCAGATCGACGCGTCCTTG 61.509 63.158 31.84 23.44 0.00 3.61
3344 3543 0.098200 CAGATCGACGCGTCCTTGTA 59.902 55.000 31.84 13.66 0.00 2.41
3346 3545 0.591741 GATCGACGCGTCCTTGTAGG 60.592 60.000 31.84 16.78 36.46 3.18
3398 3597 1.710013 CAGCGAGTTGGATGTACGTT 58.290 50.000 0.00 0.00 0.00 3.99
3400 3599 3.247442 CAGCGAGTTGGATGTACGTTTA 58.753 45.455 0.00 0.00 0.00 2.01
3402 3601 4.026804 CAGCGAGTTGGATGTACGTTTATC 60.027 45.833 0.00 0.00 0.00 1.75
3410 3609 5.849510 TGGATGTACGTTTATCTGTATGGG 58.150 41.667 0.00 0.00 0.00 4.00
3425 3624 3.792736 GGGTGGATGGCTACCGCA 61.793 66.667 13.78 0.00 45.91 5.69
3432 3631 2.092646 TGGATGGCTACCGCAAAACTAT 60.093 45.455 0.00 0.00 38.10 2.12
3448 3647 5.670792 AAACTATGGTCACGATCCACTAA 57.329 39.130 0.00 0.00 37.81 2.24
3455 3657 4.097437 TGGTCACGATCCACTAATGTCTAC 59.903 45.833 0.00 0.00 0.00 2.59
3459 3661 5.527951 TCACGATCCACTAATGTCTACTCTC 59.472 44.000 0.00 0.00 0.00 3.20
3500 3705 8.801882 TCCATCATTGTTAGTTAGTTTTAGGG 57.198 34.615 0.00 0.00 0.00 3.53
3501 3706 7.832187 TCCATCATTGTTAGTTAGTTTTAGGGG 59.168 37.037 0.00 0.00 0.00 4.79
3502 3707 7.832187 CCATCATTGTTAGTTAGTTTTAGGGGA 59.168 37.037 0.00 0.00 0.00 4.81
3503 3708 8.674607 CATCATTGTTAGTTAGTTTTAGGGGAC 58.325 37.037 0.00 0.00 0.00 4.46
3504 3709 6.875195 TCATTGTTAGTTAGTTTTAGGGGACG 59.125 38.462 0.00 0.00 0.00 4.79
3505 3710 6.418057 TTGTTAGTTAGTTTTAGGGGACGA 57.582 37.500 0.00 0.00 0.00 4.20
3506 3711 6.029346 TGTTAGTTAGTTTTAGGGGACGAG 57.971 41.667 0.00 0.00 0.00 4.18
3507 3712 5.774690 TGTTAGTTAGTTTTAGGGGACGAGA 59.225 40.000 0.00 0.00 0.00 4.04
3508 3713 4.797800 AGTTAGTTTTAGGGGACGAGAC 57.202 45.455 0.00 0.00 0.00 3.36
3509 3714 4.414677 AGTTAGTTTTAGGGGACGAGACT 58.585 43.478 0.00 0.00 0.00 3.24
3510 3715 4.837298 AGTTAGTTTTAGGGGACGAGACTT 59.163 41.667 0.00 0.00 0.00 3.01
3511 3716 3.679824 AGTTTTAGGGGACGAGACTTG 57.320 47.619 0.00 0.00 0.00 3.16
3512 3717 2.970640 AGTTTTAGGGGACGAGACTTGT 59.029 45.455 0.00 0.00 0.00 3.16
3513 3718 3.006644 AGTTTTAGGGGACGAGACTTGTC 59.993 47.826 13.74 13.74 35.60 3.18
3514 3719 2.599408 TTAGGGGACGAGACTTGTCT 57.401 50.000 20.04 2.59 36.58 3.41
3515 3720 1.835494 TAGGGGACGAGACTTGTCTG 58.165 55.000 20.04 3.80 36.58 3.51
3516 3721 1.079750 GGGGACGAGACTTGTCTGC 60.080 63.158 20.04 6.67 36.58 4.26
3517 3722 1.536943 GGGGACGAGACTTGTCTGCT 61.537 60.000 20.04 0.00 36.58 4.24
3518 3723 0.109039 GGGACGAGACTTGTCTGCTC 60.109 60.000 20.04 5.71 36.58 4.26
3519 3724 0.109039 GGACGAGACTTGTCTGCTCC 60.109 60.000 20.04 7.60 36.58 4.70
3520 3725 0.109039 GACGAGACTTGTCTGCTCCC 60.109 60.000 14.68 0.00 33.54 4.30
3521 3726 1.216710 CGAGACTTGTCTGCTCCCC 59.783 63.158 8.11 0.00 0.00 4.81
3522 3727 1.254284 CGAGACTTGTCTGCTCCCCT 61.254 60.000 8.11 0.00 0.00 4.79
3523 3728 0.534873 GAGACTTGTCTGCTCCCCTC 59.465 60.000 8.11 0.00 0.00 4.30
3524 3729 0.907230 AGACTTGTCTGCTCCCCTCC 60.907 60.000 2.11 0.00 0.00 4.30
3525 3730 1.904990 GACTTGTCTGCTCCCCTCCC 61.905 65.000 0.00 0.00 0.00 4.30
3526 3731 3.003173 TTGTCTGCTCCCCTCCCG 61.003 66.667 0.00 0.00 0.00 5.14
3527 3732 3.846405 TTGTCTGCTCCCCTCCCGT 62.846 63.158 0.00 0.00 0.00 5.28
3528 3733 3.775654 GTCTGCTCCCCTCCCGTG 61.776 72.222 0.00 0.00 0.00 4.94
3529 3734 4.316823 TCTGCTCCCCTCCCGTGT 62.317 66.667 0.00 0.00 0.00 4.49
3530 3735 4.087892 CTGCTCCCCTCCCGTGTG 62.088 72.222 0.00 0.00 0.00 3.82
3536 3741 4.047125 CCCTCCCGTGTGCCCATT 62.047 66.667 0.00 0.00 0.00 3.16
3537 3742 2.438434 CCTCCCGTGTGCCCATTC 60.438 66.667 0.00 0.00 0.00 2.67
3538 3743 2.819595 CTCCCGTGTGCCCATTCG 60.820 66.667 0.00 0.00 0.00 3.34
3539 3744 3.605749 CTCCCGTGTGCCCATTCGT 62.606 63.158 0.00 0.00 0.00 3.85
3540 3745 3.430862 CCCGTGTGCCCATTCGTG 61.431 66.667 0.00 0.00 0.00 4.35
3541 3746 4.101790 CCGTGTGCCCATTCGTGC 62.102 66.667 0.00 0.00 0.00 5.34
3542 3747 3.049674 CGTGTGCCCATTCGTGCT 61.050 61.111 0.00 0.00 0.00 4.40
3543 3748 2.870372 GTGTGCCCATTCGTGCTC 59.130 61.111 0.00 0.00 0.00 4.26
3544 3749 2.359850 TGTGCCCATTCGTGCTCC 60.360 61.111 0.00 0.00 0.00 4.70
3545 3750 3.134127 GTGCCCATTCGTGCTCCC 61.134 66.667 0.00 0.00 0.00 4.30
3546 3751 4.776322 TGCCCATTCGTGCTCCCG 62.776 66.667 0.00 0.00 0.00 5.14
3548 3753 4.776322 CCCATTCGTGCTCCCGCA 62.776 66.667 0.00 0.00 45.60 5.69
3566 3771 3.698029 GCATACGTGCCTTGATTTGAT 57.302 42.857 0.00 0.00 45.76 2.57
3567 3772 4.032703 GCATACGTGCCTTGATTTGATT 57.967 40.909 0.00 0.00 45.76 2.57
3568 3773 3.792956 GCATACGTGCCTTGATTTGATTG 59.207 43.478 0.00 0.00 45.76 2.67
3569 3774 4.353737 CATACGTGCCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
3570 3775 2.513753 ACGTGCCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
3571 3776 2.890311 ACGTGCCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
3572 3777 3.244976 CGTGCCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
3573 3778 3.305267 CGTGCCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
3586 3791 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
3587 3792 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
3599 3804 3.100514 CCCGGCCCCATCCCTTAA 61.101 66.667 0.00 0.00 0.00 1.85
3600 3805 2.695970 CCCGGCCCCATCCCTTAAA 61.696 63.158 0.00 0.00 0.00 1.52
3601 3806 1.308326 CCGGCCCCATCCCTTAAAA 59.692 57.895 0.00 0.00 0.00 1.52
3602 3807 0.105709 CCGGCCCCATCCCTTAAAAT 60.106 55.000 0.00 0.00 0.00 1.82
3603 3808 1.328279 CGGCCCCATCCCTTAAAATC 58.672 55.000 0.00 0.00 0.00 2.17
3604 3809 1.410932 CGGCCCCATCCCTTAAAATCA 60.411 52.381 0.00 0.00 0.00 2.57
3605 3810 2.319844 GGCCCCATCCCTTAAAATCAG 58.680 52.381 0.00 0.00 0.00 2.90
3606 3811 2.319844 GCCCCATCCCTTAAAATCAGG 58.680 52.381 0.00 0.00 0.00 3.86
3631 3836 8.996651 GGGGGAGATGATTAAATTAGAAAGAA 57.003 34.615 0.00 0.00 0.00 2.52
3632 3837 9.421399 GGGGGAGATGATTAAATTAGAAAGAAA 57.579 33.333 0.00 0.00 0.00 2.52
3658 3863 2.153366 AAAAAGGCAGCCGTTGAATG 57.847 45.000 13.94 0.00 0.00 2.67
3659 3864 1.327303 AAAAGGCAGCCGTTGAATGA 58.673 45.000 13.94 0.00 0.00 2.57
3660 3865 0.883833 AAAGGCAGCCGTTGAATGAG 59.116 50.000 12.36 0.00 0.00 2.90
3661 3866 0.962356 AAGGCAGCCGTTGAATGAGG 60.962 55.000 5.55 0.00 0.00 3.86
3662 3867 1.675641 GGCAGCCGTTGAATGAGGT 60.676 57.895 0.00 0.00 0.00 3.85
3663 3868 1.503542 GCAGCCGTTGAATGAGGTG 59.496 57.895 0.00 0.00 0.00 4.00
3664 3869 1.926511 GCAGCCGTTGAATGAGGTGG 61.927 60.000 7.02 0.00 0.00 4.61
3665 3870 1.002134 AGCCGTTGAATGAGGTGGG 60.002 57.895 0.00 0.00 0.00 4.61
3666 3871 1.002624 GCCGTTGAATGAGGTGGGA 60.003 57.895 0.00 0.00 0.00 4.37
3667 3872 1.026718 GCCGTTGAATGAGGTGGGAG 61.027 60.000 0.00 0.00 0.00 4.30
3668 3873 1.026718 CCGTTGAATGAGGTGGGAGC 61.027 60.000 0.00 0.00 0.00 4.70
3669 3874 0.321564 CGTTGAATGAGGTGGGAGCA 60.322 55.000 0.00 0.00 0.00 4.26
3670 3875 1.168714 GTTGAATGAGGTGGGAGCAC 58.831 55.000 0.00 0.00 0.00 4.40
3671 3876 0.321564 TTGAATGAGGTGGGAGCACG 60.322 55.000 0.00 0.00 0.00 5.34
3672 3877 1.450312 GAATGAGGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
3673 3878 1.899437 GAATGAGGTGGGAGCACGGA 61.899 60.000 0.00 0.00 0.00 4.69
3674 3879 1.274703 AATGAGGTGGGAGCACGGAT 61.275 55.000 0.00 0.00 0.00 4.18
3675 3880 1.976132 ATGAGGTGGGAGCACGGATG 61.976 60.000 0.00 0.00 0.00 3.51
3676 3881 3.391665 GAGGTGGGAGCACGGATGG 62.392 68.421 0.00 0.00 0.00 3.51
3677 3882 4.489771 GGTGGGAGCACGGATGGG 62.490 72.222 0.00 0.00 0.00 4.00
3678 3883 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
3679 3884 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
3680 3885 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
3681 3886 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
3682 3887 2.512515 GAGCACGGATGGGAGCAC 60.513 66.667 0.00 0.00 0.00 4.40
3683 3888 4.457496 AGCACGGATGGGAGCACG 62.457 66.667 0.00 0.00 0.00 5.34
3685 3890 3.770040 CACGGATGGGAGCACGGA 61.770 66.667 0.00 0.00 0.00 4.69
3686 3891 3.000819 ACGGATGGGAGCACGGAA 61.001 61.111 0.00 0.00 0.00 4.30
3687 3892 2.267642 CGGATGGGAGCACGGAAA 59.732 61.111 0.00 0.00 0.00 3.13
3688 3893 1.815421 CGGATGGGAGCACGGAAAG 60.815 63.158 0.00 0.00 0.00 2.62
3689 3894 1.452108 GGATGGGAGCACGGAAAGG 60.452 63.158 0.00 0.00 0.00 3.11
3690 3895 1.452108 GATGGGAGCACGGAAAGGG 60.452 63.158 0.00 0.00 0.00 3.95
3691 3896 1.910580 GATGGGAGCACGGAAAGGGA 61.911 60.000 0.00 0.00 0.00 4.20
3692 3897 1.497309 ATGGGAGCACGGAAAGGGAA 61.497 55.000 0.00 0.00 0.00 3.97
3693 3898 1.674651 GGGAGCACGGAAAGGGAAC 60.675 63.158 0.00 0.00 0.00 3.62
3694 3899 1.072505 GGAGCACGGAAAGGGAACA 59.927 57.895 0.00 0.00 0.00 3.18
3695 3900 0.955919 GGAGCACGGAAAGGGAACAG 60.956 60.000 0.00 0.00 0.00 3.16
3696 3901 0.955919 GAGCACGGAAAGGGAACAGG 60.956 60.000 0.00 0.00 0.00 4.00
3697 3902 2.626780 GCACGGAAAGGGAACAGGC 61.627 63.158 0.00 0.00 0.00 4.85
3698 3903 1.228124 CACGGAAAGGGAACAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
3699 3904 0.821711 CACGGAAAGGGAACAGGCAA 60.822 55.000 0.00 0.00 0.00 4.52
3700 3905 0.537371 ACGGAAAGGGAACAGGCAAG 60.537 55.000 0.00 0.00 0.00 4.01
3701 3906 1.866853 CGGAAAGGGAACAGGCAAGC 61.867 60.000 0.00 0.00 0.00 4.01
3702 3907 1.536073 GGAAAGGGAACAGGCAAGCC 61.536 60.000 2.02 2.02 0.00 4.35
3703 3908 0.827507 GAAAGGGAACAGGCAAGCCA 60.828 55.000 14.40 0.00 38.92 4.75
3704 3909 0.829182 AAAGGGAACAGGCAAGCCAG 60.829 55.000 14.40 8.00 38.92 4.85
3705 3910 1.719063 AAGGGAACAGGCAAGCCAGA 61.719 55.000 14.40 0.00 38.92 3.86
3706 3911 1.000396 GGGAACAGGCAAGCCAGAT 60.000 57.895 14.40 0.00 38.92 2.90
3707 3912 1.034292 GGGAACAGGCAAGCCAGATC 61.034 60.000 14.40 9.43 38.92 2.75
3708 3913 1.034292 GGAACAGGCAAGCCAGATCC 61.034 60.000 15.12 15.12 37.39 3.36
3709 3914 0.322816 GAACAGGCAAGCCAGATCCA 60.323 55.000 14.40 0.00 38.92 3.41
3710 3915 0.323178 AACAGGCAAGCCAGATCCAG 60.323 55.000 14.40 0.00 38.92 3.86
3711 3916 1.302285 CAGGCAAGCCAGATCCAGT 59.698 57.895 14.40 0.00 38.92 4.00
3712 3917 0.323178 CAGGCAAGCCAGATCCAGTT 60.323 55.000 14.40 0.00 38.92 3.16
3713 3918 0.407139 AGGCAAGCCAGATCCAGTTT 59.593 50.000 14.40 0.00 38.92 2.66
3714 3919 1.203100 AGGCAAGCCAGATCCAGTTTT 60.203 47.619 14.40 0.00 38.92 2.43
3715 3920 2.041620 AGGCAAGCCAGATCCAGTTTTA 59.958 45.455 14.40 0.00 38.92 1.52
3716 3921 2.424956 GGCAAGCCAGATCCAGTTTTAG 59.575 50.000 6.14 0.00 35.81 1.85
3717 3922 2.424956 GCAAGCCAGATCCAGTTTTAGG 59.575 50.000 0.00 0.00 0.00 2.69
3718 3923 3.019564 CAAGCCAGATCCAGTTTTAGGG 58.980 50.000 0.00 0.00 0.00 3.53
3719 3924 1.566231 AGCCAGATCCAGTTTTAGGGG 59.434 52.381 0.00 0.00 0.00 4.79
3720 3925 2.024306 GCCAGATCCAGTTTTAGGGGC 61.024 57.143 0.00 0.00 0.00 5.80
3721 3926 1.668419 CAGATCCAGTTTTAGGGGCG 58.332 55.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.507280 GTGTGGATTGAATGTCTACATTAATTG 57.493 33.333 8.27 0.00 45.72 2.32
55 56 7.702348 GCAACCATTGTCTATTAATTGAGGTTC 59.298 37.037 14.22 8.82 33.71 3.62
58 59 7.099266 TGCAACCATTGTCTATTAATTGAGG 57.901 36.000 0.00 1.37 0.00 3.86
80 81 7.320443 TGGAGATACTATTTCACATGTTTGC 57.680 36.000 0.00 0.00 0.00 3.68
96 97 8.888716 GGATCTCTTTTCTTTTCTTGGAGATAC 58.111 37.037 0.00 0.00 38.60 2.24
97 98 8.049721 GGGATCTCTTTTCTTTTCTTGGAGATA 58.950 37.037 0.00 0.00 38.60 1.98
98 99 6.889177 GGGATCTCTTTTCTTTTCTTGGAGAT 59.111 38.462 0.00 0.00 40.37 2.75
106 107 6.571344 GCTTTCAGGGGATCTCTTTTCTTTTC 60.571 42.308 0.00 0.00 0.00 2.29
112 113 3.814504 TGCTTTCAGGGGATCTCTTTT 57.185 42.857 0.00 0.00 0.00 2.27
115 116 2.579860 ACATTGCTTTCAGGGGATCTCT 59.420 45.455 0.00 0.00 0.00 3.10
116 117 2.686915 CACATTGCTTTCAGGGGATCTC 59.313 50.000 0.00 0.00 0.00 2.75
174 178 5.469421 TGCATTGAAAATGAAAATGGTGGAC 59.531 36.000 4.18 0.00 32.96 4.02
201 205 2.335712 GCGGGGTTGCTTCCTCTTG 61.336 63.158 0.00 0.00 0.00 3.02
284 288 5.003804 TCAAGTTTCCTTTTGCCTAGCTAG 58.996 41.667 14.20 14.20 0.00 3.42
285 289 4.980573 TCAAGTTTCCTTTTGCCTAGCTA 58.019 39.130 0.00 0.00 0.00 3.32
286 290 3.832527 TCAAGTTTCCTTTTGCCTAGCT 58.167 40.909 0.00 0.00 0.00 3.32
287 291 4.584327 TTCAAGTTTCCTTTTGCCTAGC 57.416 40.909 0.00 0.00 0.00 3.42
288 292 5.928264 CCAATTCAAGTTTCCTTTTGCCTAG 59.072 40.000 0.00 0.00 0.00 3.02
289 293 5.365314 ACCAATTCAAGTTTCCTTTTGCCTA 59.635 36.000 0.00 0.00 0.00 3.93
290 294 4.164030 ACCAATTCAAGTTTCCTTTTGCCT 59.836 37.500 0.00 0.00 0.00 4.75
291 295 4.450976 ACCAATTCAAGTTTCCTTTTGCC 58.549 39.130 0.00 0.00 0.00 4.52
332 336 6.150307 ACAACCACATTTTCGCTTGACATATA 59.850 34.615 0.00 0.00 0.00 0.86
333 337 5.048083 ACAACCACATTTTCGCTTGACATAT 60.048 36.000 0.00 0.00 0.00 1.78
344 348 1.501169 GCAGGCACAACCACATTTTC 58.499 50.000 0.00 0.00 43.14 2.29
402 406 4.336993 TGGATTATACATGGTTTTGGCGTC 59.663 41.667 0.00 0.00 0.00 5.19
432 445 8.162085 ACATGACATGGCAGATATATCTTTCTT 58.838 33.333 19.39 4.07 32.19 2.52
433 446 7.687388 ACATGACATGGCAGATATATCTTTCT 58.313 34.615 19.39 0.00 32.19 2.52
434 447 7.605309 TGACATGACATGGCAGATATATCTTTC 59.395 37.037 20.37 8.50 45.06 2.62
435 448 7.455891 TGACATGACATGGCAGATATATCTTT 58.544 34.615 20.37 0.00 45.06 2.52
436 449 7.012661 TGACATGACATGGCAGATATATCTT 57.987 36.000 20.37 0.00 45.06 2.40
437 450 6.616237 TGACATGACATGGCAGATATATCT 57.384 37.500 20.37 9.57 45.06 1.98
480 493 4.263068 CCATTCTCATGGGGGATGTAGTAC 60.263 50.000 0.00 0.00 45.99 2.73
481 494 3.909995 CCATTCTCATGGGGGATGTAGTA 59.090 47.826 0.00 0.00 45.99 1.82
483 496 3.430042 CCATTCTCATGGGGGATGTAG 57.570 52.381 0.00 0.00 45.99 2.74
547 561 3.206150 TGCCTTTGTTTCTCACTCACTC 58.794 45.455 0.00 0.00 0.00 3.51
588 603 2.344872 CCTTTGCTTGGCTTGGGC 59.655 61.111 0.00 0.00 37.82 5.36
846 865 0.478507 GAGAGGAGAGGAGAGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
847 866 0.478507 GGAGAGGAGAGGAGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
848 867 1.522900 AGGAGAGGAGAGGAGAGGAG 58.477 60.000 0.00 0.00 0.00 3.69
849 868 1.850345 GAAGGAGAGGAGAGGAGAGGA 59.150 57.143 0.00 0.00 0.00 3.71
850 869 1.133482 GGAAGGAGAGGAGAGGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
851 870 1.476833 CGGAAGGAGAGGAGAGGAGAG 60.477 61.905 0.00 0.00 0.00 3.20
852 871 0.548989 CGGAAGGAGAGGAGAGGAGA 59.451 60.000 0.00 0.00 0.00 3.71
853 872 3.109847 CGGAAGGAGAGGAGAGGAG 57.890 63.158 0.00 0.00 0.00 3.69
915 934 1.074471 GAGGATGTGCCCTCCCCTA 60.074 63.158 0.00 0.00 45.44 3.53
941 969 1.679311 CTGGCTGGCTACACAAGGA 59.321 57.895 2.00 0.00 0.00 3.36
942 970 2.042831 GCTGGCTGGCTACACAAGG 61.043 63.158 2.00 0.00 0.00 3.61
943 971 2.042831 GGCTGGCTGGCTACACAAG 61.043 63.158 10.74 0.00 38.32 3.16
945 973 3.248418 TGGCTGGCTGGCTACACA 61.248 61.111 18.27 0.00 42.34 3.72
947 975 4.415150 GCTGGCTGGCTGGCTACA 62.415 66.667 18.27 0.00 42.34 2.74
988 1016 7.722285 GGGAGTTATATATAGTCCTAGGAGCAG 59.278 44.444 13.15 0.00 0.00 4.24
1053 1081 0.391793 GGTTGCGGGAGAGAAAGAGG 60.392 60.000 0.00 0.00 0.00 3.69
1058 1086 2.654877 GACGGTTGCGGGAGAGAA 59.345 61.111 0.00 0.00 0.00 2.87
1059 1087 3.379445 GGACGGTTGCGGGAGAGA 61.379 66.667 0.00 0.00 0.00 3.10
1063 1091 3.235481 TCTTGGACGGTTGCGGGA 61.235 61.111 0.00 0.00 0.00 5.14
1104 1132 2.245532 GCGTCTGTGTCACGTTGC 59.754 61.111 0.00 0.00 39.54 4.17
1131 1159 1.217747 TGCCTCCTCTCCTCTCCTCA 61.218 60.000 0.00 0.00 0.00 3.86
1132 1160 0.468029 CTGCCTCCTCTCCTCTCCTC 60.468 65.000 0.00 0.00 0.00 3.71
1177 1210 0.179062 GGTCATGGCAGGAGTAGCAG 60.179 60.000 0.25 0.00 0.00 4.24
1394 1430 7.360438 GCATTCATATAAGAAGGCGGAGTAAAG 60.360 40.741 11.04 0.00 43.95 1.85
1395 1431 6.426937 GCATTCATATAAGAAGGCGGAGTAAA 59.573 38.462 11.04 0.00 43.95 2.01
1396 1432 5.932303 GCATTCATATAAGAAGGCGGAGTAA 59.068 40.000 11.04 0.00 43.95 2.24
1405 1441 6.453557 CGACGATTCGCATTCATATAAGAAG 58.546 40.000 5.86 0.00 38.71 2.85
1421 1460 0.598680 CTCCATCCCAGCGACGATTC 60.599 60.000 0.00 0.00 0.00 2.52
1673 1731 1.066908 TCGCCAAGCACAAAAGGAAAG 59.933 47.619 0.00 0.00 0.00 2.62
1674 1732 1.107114 TCGCCAAGCACAAAAGGAAA 58.893 45.000 0.00 0.00 0.00 3.13
1677 1735 0.454957 CGATCGCCAAGCACAAAAGG 60.455 55.000 0.26 0.00 0.00 3.11
1679 1737 0.665835 AACGATCGCCAAGCACAAAA 59.334 45.000 16.60 0.00 0.00 2.44
2088 2159 1.080230 CAGGCACGAGTGTCTCCTG 60.080 63.158 7.45 10.13 42.78 3.86
2094 2168 2.341543 CTGAGCAGGCACGAGTGT 59.658 61.111 5.07 0.00 0.00 3.55
2442 2516 1.079438 GGCATTGGGGTTGGGGTTA 59.921 57.895 0.00 0.00 0.00 2.85
2489 2563 3.766691 GTTACAGGGCCGGAGCGA 61.767 66.667 11.67 0.00 41.24 4.93
2509 2583 3.755628 GGTGCTAGGACACGGCGA 61.756 66.667 16.62 0.00 41.65 5.54
2527 2601 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
2528 2602 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
2529 2603 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
2530 2604 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
2531 2605 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
2532 2606 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
2533 2607 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
2534 2608 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
2535 2609 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
2536 2610 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
2537 2611 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
2540 2614 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
2541 2615 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
2551 2625 3.925630 ATGACCCAACTGCGCCCTG 62.926 63.158 4.18 0.00 0.00 4.45
2552 2626 3.210012 AATGACCCAACTGCGCCCT 62.210 57.895 4.18 0.00 0.00 5.19
2553 2627 2.676471 AATGACCCAACTGCGCCC 60.676 61.111 4.18 0.00 0.00 6.13
2554 2628 1.971167 TCAATGACCCAACTGCGCC 60.971 57.895 4.18 0.00 0.00 6.53
2555 2629 1.210155 GTCAATGACCCAACTGCGC 59.790 57.895 0.00 0.00 0.00 6.09
2556 2630 0.950836 TTGTCAATGACCCAACTGCG 59.049 50.000 11.24 0.00 0.00 5.18
2557 2631 1.956477 AGTTGTCAATGACCCAACTGC 59.044 47.619 15.53 0.00 45.14 4.40
2558 2632 3.796504 GCAAGTTGTCAATGACCCAACTG 60.797 47.826 16.57 12.56 45.89 3.16
2560 2634 2.362077 AGCAAGTTGTCAATGACCCAAC 59.638 45.455 11.24 9.50 38.94 3.77
2561 2635 2.665165 AGCAAGTTGTCAATGACCCAA 58.335 42.857 11.24 0.00 0.00 4.12
2562 2636 2.363306 AGCAAGTTGTCAATGACCCA 57.637 45.000 11.24 0.00 0.00 4.51
2563 2637 3.642705 GAAAGCAAGTTGTCAATGACCC 58.357 45.455 11.24 1.50 0.00 4.46
2564 2638 3.300009 CGAAAGCAAGTTGTCAATGACC 58.700 45.455 11.24 0.00 0.00 4.02
2565 2639 3.300009 CCGAAAGCAAGTTGTCAATGAC 58.700 45.455 6.41 6.41 0.00 3.06
2566 2640 2.293122 CCCGAAAGCAAGTTGTCAATGA 59.707 45.455 4.48 0.00 0.00 2.57
2567 2641 2.664916 CCCGAAAGCAAGTTGTCAATG 58.335 47.619 4.48 0.00 0.00 2.82
2568 2642 1.000274 GCCCGAAAGCAAGTTGTCAAT 60.000 47.619 4.48 0.00 0.00 2.57
2569 2643 0.383949 GCCCGAAAGCAAGTTGTCAA 59.616 50.000 4.48 0.00 0.00 3.18
2570 2644 1.452145 GGCCCGAAAGCAAGTTGTCA 61.452 55.000 4.48 0.00 0.00 3.58
2571 2645 1.285950 GGCCCGAAAGCAAGTTGTC 59.714 57.895 4.48 0.00 0.00 3.18
2572 2646 2.200337 GGGCCCGAAAGCAAGTTGT 61.200 57.895 5.69 0.00 0.00 3.32
2573 2647 2.199652 TGGGCCCGAAAGCAAGTTG 61.200 57.895 19.37 0.00 0.00 3.16
2574 2648 2.197324 TGGGCCCGAAAGCAAGTT 59.803 55.556 19.37 0.00 0.00 2.66
2575 2649 2.597510 GTGGGCCCGAAAGCAAGT 60.598 61.111 19.37 0.00 0.00 3.16
2576 2650 3.373565 GGTGGGCCCGAAAGCAAG 61.374 66.667 19.37 0.00 0.00 4.01
2577 2651 3.897122 AGGTGGGCCCGAAAGCAA 61.897 61.111 19.37 0.00 38.74 3.91
2578 2652 4.659172 CAGGTGGGCCCGAAAGCA 62.659 66.667 19.37 0.00 38.74 3.91
2579 2653 4.660938 ACAGGTGGGCCCGAAAGC 62.661 66.667 19.37 9.80 38.74 3.51
2580 2654 2.359975 GACAGGTGGGCCCGAAAG 60.360 66.667 19.37 10.07 38.74 2.62
2581 2655 3.961414 GGACAGGTGGGCCCGAAA 61.961 66.667 19.37 0.00 38.74 3.46
2586 2660 4.280019 AAACGGGACAGGTGGGCC 62.280 66.667 0.00 0.00 0.00 5.80
2587 2661 2.671963 GAAACGGGACAGGTGGGC 60.672 66.667 0.00 0.00 0.00 5.36
2588 2662 0.179001 AAAGAAACGGGACAGGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
2589 2663 1.687563 AAAAGAAACGGGACAGGTGG 58.312 50.000 0.00 0.00 0.00 4.61
2590 2664 5.447624 AAATAAAAGAAACGGGACAGGTG 57.552 39.130 0.00 0.00 0.00 4.00
2591 2665 6.322969 AGAAAAATAAAAGAAACGGGACAGGT 59.677 34.615 0.00 0.00 0.00 4.00
2592 2666 6.640907 CAGAAAAATAAAAGAAACGGGACAGG 59.359 38.462 0.00 0.00 0.00 4.00
2593 2667 6.640907 CCAGAAAAATAAAAGAAACGGGACAG 59.359 38.462 0.00 0.00 0.00 3.51
2594 2668 6.508777 CCAGAAAAATAAAAGAAACGGGACA 58.491 36.000 0.00 0.00 0.00 4.02
2595 2669 5.404366 GCCAGAAAAATAAAAGAAACGGGAC 59.596 40.000 0.00 0.00 0.00 4.46
2596 2670 5.510009 GGCCAGAAAAATAAAAGAAACGGGA 60.510 40.000 0.00 0.00 0.00 5.14
2641 2732 1.218316 GTACAGAGAAGGGTGCGGG 59.782 63.158 0.00 0.00 0.00 6.13
2645 2736 2.417379 CGACCATGTACAGAGAAGGGTG 60.417 54.545 0.33 0.00 0.00 4.61
2775 2896 3.856521 CACATCACATCTCGACAGAACTC 59.143 47.826 0.00 0.00 30.24 3.01
2777 2898 3.838120 TCACATCACATCTCGACAGAAC 58.162 45.455 0.00 0.00 30.24 3.01
2780 2901 4.628766 ACATTTCACATCACATCTCGACAG 59.371 41.667 0.00 0.00 0.00 3.51
2781 2902 4.389687 CACATTTCACATCACATCTCGACA 59.610 41.667 0.00 0.00 0.00 4.35
2805 2934 0.027586 AACTGCACAACTTTCGACGC 59.972 50.000 0.00 0.00 0.00 5.19
2923 3056 4.442375 TTTGAACTTCAAAGCGGAAACA 57.558 36.364 12.12 0.00 41.02 2.83
2930 3063 3.673338 GGGCGTATTTTGAACTTCAAAGC 59.327 43.478 14.98 14.35 45.77 3.51
2953 3086 2.033141 GTCCTGCTCAAGCCTGCA 59.967 61.111 0.00 0.00 41.18 4.41
2961 3094 3.686760 CAGAGACCGTCCTGCTCA 58.313 61.111 0.00 0.00 0.00 4.26
3006 3141 1.352404 GGTCACGAGATCGACCGAG 59.648 63.158 9.58 3.37 42.19 4.63
3011 3146 0.171231 CTTGCTGGTCACGAGATCGA 59.829 55.000 9.58 0.00 43.02 3.59
3017 3152 1.270305 CCTCTTTCTTGCTGGTCACGA 60.270 52.381 0.00 0.00 0.00 4.35
3027 3162 2.691409 TATCACGGCCCTCTTTCTTG 57.309 50.000 0.00 0.00 0.00 3.02
3046 3181 9.964303 GCTGGGTTTCAATTTATTTTCATTTTT 57.036 25.926 0.00 0.00 0.00 1.94
3061 3196 1.275291 CTCTACTCCGCTGGGTTTCAA 59.725 52.381 0.00 0.00 33.83 2.69
3062 3197 0.895530 CTCTACTCCGCTGGGTTTCA 59.104 55.000 0.00 0.00 33.83 2.69
3063 3198 0.896226 ACTCTACTCCGCTGGGTTTC 59.104 55.000 0.00 0.00 33.83 2.78
3064 3199 2.100989 CTACTCTACTCCGCTGGGTTT 58.899 52.381 0.00 0.00 33.83 3.27
3065 3200 1.685491 CCTACTCTACTCCGCTGGGTT 60.685 57.143 0.00 0.00 33.83 4.11
3066 3201 0.106619 CCTACTCTACTCCGCTGGGT 60.107 60.000 0.00 0.00 33.83 4.51
3067 3202 0.183014 TCCTACTCTACTCCGCTGGG 59.817 60.000 0.00 0.00 0.00 4.45
3068 3203 2.279935 ATCCTACTCTACTCCGCTGG 57.720 55.000 0.00 0.00 0.00 4.85
3069 3204 2.554893 GGAATCCTACTCTACTCCGCTG 59.445 54.545 0.00 0.00 0.00 5.18
3070 3205 2.489437 GGGAATCCTACTCTACTCCGCT 60.489 54.545 0.00 0.00 0.00 5.52
3071 3206 1.887854 GGGAATCCTACTCTACTCCGC 59.112 57.143 0.00 0.00 0.00 5.54
3072 3207 2.152830 CGGGAATCCTACTCTACTCCG 58.847 57.143 0.00 0.00 0.00 4.63
3073 3208 2.885894 CACGGGAATCCTACTCTACTCC 59.114 54.545 0.00 0.00 0.00 3.85
3074 3209 2.293955 GCACGGGAATCCTACTCTACTC 59.706 54.545 0.00 0.00 0.00 2.59
3075 3210 2.308690 GCACGGGAATCCTACTCTACT 58.691 52.381 0.00 0.00 0.00 2.57
3076 3211 1.340568 GGCACGGGAATCCTACTCTAC 59.659 57.143 0.00 0.00 0.00 2.59
3077 3212 1.700955 GGCACGGGAATCCTACTCTA 58.299 55.000 0.00 0.00 0.00 2.43
3078 3213 1.049289 GGGCACGGGAATCCTACTCT 61.049 60.000 0.00 0.00 0.00 3.24
3079 3214 1.446366 GGGCACGGGAATCCTACTC 59.554 63.158 0.00 0.00 0.00 2.59
3080 3215 2.070650 GGGGCACGGGAATCCTACT 61.071 63.158 0.00 0.00 0.00 2.57
3081 3216 2.509422 GGGGCACGGGAATCCTAC 59.491 66.667 0.00 0.00 0.00 3.18
3120 3302 1.121407 CGGCCCACTGGATGAGGATA 61.121 60.000 0.00 0.00 0.00 2.59
3210 3393 0.605589 ACTAGCAGCAGCCGGATATC 59.394 55.000 5.05 0.00 43.56 1.63
3324 3523 2.202623 AAGGACGCGTCGATCTGC 60.203 61.111 30.99 17.03 0.00 4.26
3341 3540 0.968405 AGTTAAACGCCGGTCCTACA 59.032 50.000 1.90 0.00 0.00 2.74
3342 3541 1.995484 GAAGTTAAACGCCGGTCCTAC 59.005 52.381 1.90 0.00 0.00 3.18
3344 3543 0.683412 AGAAGTTAAACGCCGGTCCT 59.317 50.000 1.90 0.00 0.00 3.85
3346 3545 1.399343 GCAAGAAGTTAAACGCCGGTC 60.399 52.381 1.90 0.00 0.00 4.79
3398 3597 3.326521 AGCCATCCACCCATACAGATAA 58.673 45.455 0.00 0.00 0.00 1.75
3400 3599 1.825105 AGCCATCCACCCATACAGAT 58.175 50.000 0.00 0.00 0.00 2.90
3402 3601 1.072331 GGTAGCCATCCACCCATACAG 59.928 57.143 0.00 0.00 0.00 2.74
3410 3609 0.170339 GTTTTGCGGTAGCCATCCAC 59.830 55.000 0.00 0.00 44.33 4.02
3425 3624 4.553330 AGTGGATCGTGACCATAGTTTT 57.447 40.909 0.00 0.00 39.69 2.43
3432 3631 3.096852 AGACATTAGTGGATCGTGACCA 58.903 45.455 0.00 0.00 34.84 4.02
3448 3647 5.986501 ACGAGGAAAAAGAGAGTAGACAT 57.013 39.130 0.00 0.00 0.00 3.06
3455 3657 5.967088 TGGATTCTACGAGGAAAAAGAGAG 58.033 41.667 0.00 0.00 0.00 3.20
3459 3661 7.066284 ACAATGATGGATTCTACGAGGAAAAAG 59.934 37.037 0.00 0.00 0.00 2.27
3500 3705 0.109039 GGAGCAGACAAGTCTCGTCC 60.109 60.000 10.21 10.21 37.98 4.79
3501 3706 0.109039 GGGAGCAGACAAGTCTCGTC 60.109 60.000 0.00 0.27 37.98 4.20
3502 3707 1.536943 GGGGAGCAGACAAGTCTCGT 61.537 60.000 0.00 0.00 37.98 4.18
3503 3708 1.216710 GGGGAGCAGACAAGTCTCG 59.783 63.158 0.00 0.00 37.98 4.04
3504 3709 0.534873 GAGGGGAGCAGACAAGTCTC 59.465 60.000 0.00 0.00 37.98 3.36
3505 3710 0.907230 GGAGGGGAGCAGACAAGTCT 60.907 60.000 0.00 0.00 41.37 3.24
3506 3711 1.599576 GGAGGGGAGCAGACAAGTC 59.400 63.158 0.00 0.00 0.00 3.01
3507 3712 1.920835 GGGAGGGGAGCAGACAAGT 60.921 63.158 0.00 0.00 0.00 3.16
3508 3713 2.993853 GGGAGGGGAGCAGACAAG 59.006 66.667 0.00 0.00 0.00 3.16
3509 3714 3.003173 CGGGAGGGGAGCAGACAA 61.003 66.667 0.00 0.00 0.00 3.18
3510 3715 4.316823 ACGGGAGGGGAGCAGACA 62.317 66.667 0.00 0.00 0.00 3.41
3511 3716 3.775654 CACGGGAGGGGAGCAGAC 61.776 72.222 0.00 0.00 0.00 3.51
3512 3717 4.316823 ACACGGGAGGGGAGCAGA 62.317 66.667 0.00 0.00 37.82 4.26
3513 3718 4.087892 CACACGGGAGGGGAGCAG 62.088 72.222 0.00 0.00 37.82 4.24
3519 3724 3.995506 GAATGGGCACACGGGAGGG 62.996 68.421 0.00 0.00 40.95 4.30
3520 3725 2.438434 GAATGGGCACACGGGAGG 60.438 66.667 0.00 0.00 0.00 4.30
3521 3726 2.819595 CGAATGGGCACACGGGAG 60.820 66.667 0.00 0.00 0.00 4.30
3522 3727 3.632080 ACGAATGGGCACACGGGA 61.632 61.111 3.87 0.00 0.00 5.14
3523 3728 3.430862 CACGAATGGGCACACGGG 61.431 66.667 3.87 0.00 0.00 5.28
3524 3729 4.101790 GCACGAATGGGCACACGG 62.102 66.667 3.87 0.00 0.00 4.94
3525 3730 3.027170 GAGCACGAATGGGCACACG 62.027 63.158 0.00 0.00 0.00 4.49
3526 3731 2.690778 GGAGCACGAATGGGCACAC 61.691 63.158 0.00 0.00 0.00 3.82
3527 3732 2.359850 GGAGCACGAATGGGCACA 60.360 61.111 0.00 0.00 0.00 4.57
3528 3733 3.134127 GGGAGCACGAATGGGCAC 61.134 66.667 0.00 0.00 0.00 5.01
3529 3734 4.776322 CGGGAGCACGAATGGGCA 62.776 66.667 0.00 0.00 35.47 5.36
3547 3752 4.096231 TCCAATCAAATCAAGGCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
3548 3753 4.269183 TCCAATCAAATCAAGGCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
3549 3754 3.680490 TCCAATCAAATCAAGGCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
3550 3755 2.513753 TCCAATCAAATCAAGGCACGT 58.486 42.857 0.00 0.00 0.00 4.49
3551 3756 3.244976 GTTCCAATCAAATCAAGGCACG 58.755 45.455 0.00 0.00 0.00 5.34
3552 3757 4.255833 TGTTCCAATCAAATCAAGGCAC 57.744 40.909 0.00 0.00 0.00 5.01
3553 3758 4.952071 TTGTTCCAATCAAATCAAGGCA 57.048 36.364 0.00 0.00 0.00 4.75
3554 3759 6.806388 ATTTTGTTCCAATCAAATCAAGGC 57.194 33.333 0.00 0.00 35.25 4.35
3555 3760 8.938906 CCTTATTTTGTTCCAATCAAATCAAGG 58.061 33.333 12.53 12.53 38.36 3.61
3556 3761 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
3557 3762 7.390162 GGCCTTATTTTGTTCCAATCAAATCAA 59.610 33.333 0.00 0.00 35.25 2.57
3558 3763 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
3559 3764 6.316140 GGGCCTTATTTTGTTCCAATCAAATC 59.684 38.462 0.84 0.00 35.25 2.17
3560 3765 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
3561 3766 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
3562 3767 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
3563 3768 3.194542 CGGGCCTTATTTTGTTCCAATCA 59.805 43.478 0.84 0.00 0.00 2.57
3564 3769 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
3565 3770 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
3566 3771 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
3567 3772 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
3568 3773 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
3569 3774 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
3570 3775 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
3571 3776 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
3582 3787 2.231540 TTTTAAGGGATGGGGCCGGG 62.232 60.000 2.18 0.00 0.00 5.73
3583 3788 0.105709 ATTTTAAGGGATGGGGCCGG 60.106 55.000 0.00 0.00 0.00 6.13
3584 3789 1.328279 GATTTTAAGGGATGGGGCCG 58.672 55.000 0.00 0.00 0.00 6.13
3585 3790 2.319844 CTGATTTTAAGGGATGGGGCC 58.680 52.381 0.00 0.00 0.00 5.80
3586 3791 2.319844 CCTGATTTTAAGGGATGGGGC 58.680 52.381 0.00 0.00 0.00 5.80
3606 3811 8.996651 TTCTTTCTAATTTAATCATCTCCCCC 57.003 34.615 0.00 0.00 0.00 5.40
3639 3844 1.686052 TCATTCAACGGCTGCCTTTTT 59.314 42.857 17.92 4.16 0.00 1.94
3640 3845 1.270550 CTCATTCAACGGCTGCCTTTT 59.729 47.619 17.92 6.85 0.00 2.27
3641 3846 0.883833 CTCATTCAACGGCTGCCTTT 59.116 50.000 17.92 11.27 0.00 3.11
3642 3847 0.962356 CCTCATTCAACGGCTGCCTT 60.962 55.000 17.92 4.00 0.00 4.35
3643 3848 1.377725 CCTCATTCAACGGCTGCCT 60.378 57.895 17.92 0.55 0.00 4.75
3644 3849 1.675641 ACCTCATTCAACGGCTGCC 60.676 57.895 9.11 9.11 0.00 4.85
3645 3850 1.503542 CACCTCATTCAACGGCTGC 59.496 57.895 0.00 0.00 0.00 5.25
3646 3851 1.308069 CCCACCTCATTCAACGGCTG 61.308 60.000 0.00 0.00 0.00 4.85
3647 3852 1.002134 CCCACCTCATTCAACGGCT 60.002 57.895 0.00 0.00 0.00 5.52
3648 3853 1.002624 TCCCACCTCATTCAACGGC 60.003 57.895 0.00 0.00 0.00 5.68
3649 3854 1.026718 GCTCCCACCTCATTCAACGG 61.027 60.000 0.00 0.00 0.00 4.44
3650 3855 0.321564 TGCTCCCACCTCATTCAACG 60.322 55.000 0.00 0.00 0.00 4.10
3651 3856 1.168714 GTGCTCCCACCTCATTCAAC 58.831 55.000 0.00 0.00 35.92 3.18
3652 3857 0.321564 CGTGCTCCCACCTCATTCAA 60.322 55.000 0.00 0.00 38.79 2.69
3653 3858 1.296392 CGTGCTCCCACCTCATTCA 59.704 57.895 0.00 0.00 38.79 2.57
3654 3859 1.450312 CCGTGCTCCCACCTCATTC 60.450 63.158 0.00 0.00 38.79 2.67
3655 3860 1.274703 ATCCGTGCTCCCACCTCATT 61.275 55.000 0.00 0.00 38.79 2.57
3656 3861 1.690633 ATCCGTGCTCCCACCTCAT 60.691 57.895 0.00 0.00 38.79 2.90
3657 3862 2.284625 ATCCGTGCTCCCACCTCA 60.285 61.111 0.00 0.00 38.79 3.86
3658 3863 2.187946 CATCCGTGCTCCCACCTC 59.812 66.667 0.00 0.00 38.79 3.85
3659 3864 3.402681 CCATCCGTGCTCCCACCT 61.403 66.667 0.00 0.00 38.79 4.00
3660 3865 4.489771 CCCATCCGTGCTCCCACC 62.490 72.222 0.00 0.00 38.79 4.61
3661 3866 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
3662 3867 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
3663 3868 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
3664 3869 3.785859 TGCTCCCATCCGTGCTCC 61.786 66.667 0.00 0.00 0.00 4.70
3665 3870 2.512515 GTGCTCCCATCCGTGCTC 60.513 66.667 0.00 0.00 0.00 4.26
3666 3871 4.457496 CGTGCTCCCATCCGTGCT 62.457 66.667 0.00 0.00 0.00 4.40
3668 3873 2.796483 TTTCCGTGCTCCCATCCGTG 62.796 60.000 0.00 0.00 0.00 4.94
3669 3874 2.521958 CTTTCCGTGCTCCCATCCGT 62.522 60.000 0.00 0.00 0.00 4.69
3670 3875 1.815421 CTTTCCGTGCTCCCATCCG 60.815 63.158 0.00 0.00 0.00 4.18
3671 3876 1.452108 CCTTTCCGTGCTCCCATCC 60.452 63.158 0.00 0.00 0.00 3.51
3672 3877 1.452108 CCCTTTCCGTGCTCCCATC 60.452 63.158 0.00 0.00 0.00 3.51
3673 3878 1.497309 TTCCCTTTCCGTGCTCCCAT 61.497 55.000 0.00 0.00 0.00 4.00
3674 3879 2.150719 TTCCCTTTCCGTGCTCCCA 61.151 57.895 0.00 0.00 0.00 4.37
3675 3880 1.674651 GTTCCCTTTCCGTGCTCCC 60.675 63.158 0.00 0.00 0.00 4.30
3676 3881 0.955919 CTGTTCCCTTTCCGTGCTCC 60.956 60.000 0.00 0.00 0.00 4.70
3677 3882 0.955919 CCTGTTCCCTTTCCGTGCTC 60.956 60.000 0.00 0.00 0.00 4.26
3678 3883 1.073199 CCTGTTCCCTTTCCGTGCT 59.927 57.895 0.00 0.00 0.00 4.40
3679 3884 2.626780 GCCTGTTCCCTTTCCGTGC 61.627 63.158 0.00 0.00 0.00 5.34
3680 3885 0.821711 TTGCCTGTTCCCTTTCCGTG 60.822 55.000 0.00 0.00 0.00 4.94
3681 3886 0.537371 CTTGCCTGTTCCCTTTCCGT 60.537 55.000 0.00 0.00 0.00 4.69
3682 3887 1.866853 GCTTGCCTGTTCCCTTTCCG 61.867 60.000 0.00 0.00 0.00 4.30
3683 3888 1.536073 GGCTTGCCTGTTCCCTTTCC 61.536 60.000 4.11 0.00 0.00 3.13
3684 3889 0.827507 TGGCTTGCCTGTTCCCTTTC 60.828 55.000 13.18 0.00 0.00 2.62
3685 3890 0.829182 CTGGCTTGCCTGTTCCCTTT 60.829 55.000 13.18 0.00 0.00 3.11
3686 3891 1.228675 CTGGCTTGCCTGTTCCCTT 60.229 57.895 13.18 0.00 0.00 3.95
3687 3892 1.504275 ATCTGGCTTGCCTGTTCCCT 61.504 55.000 13.18 0.00 0.00 4.20
3688 3893 1.000396 ATCTGGCTTGCCTGTTCCC 60.000 57.895 13.18 0.00 0.00 3.97
3689 3894 1.034292 GGATCTGGCTTGCCTGTTCC 61.034 60.000 23.35 23.35 0.00 3.62
3690 3895 0.322816 TGGATCTGGCTTGCCTGTTC 60.323 55.000 13.18 15.06 0.00 3.18
3691 3896 0.323178 CTGGATCTGGCTTGCCTGTT 60.323 55.000 13.18 7.44 0.00 3.16
3692 3897 1.302285 CTGGATCTGGCTTGCCTGT 59.698 57.895 13.18 3.69 0.00 4.00
3693 3898 0.323178 AACTGGATCTGGCTTGCCTG 60.323 55.000 13.18 12.33 0.00 4.85
3694 3899 0.407139 AAACTGGATCTGGCTTGCCT 59.593 50.000 13.18 0.00 0.00 4.75
3695 3900 1.260544 AAAACTGGATCTGGCTTGCC 58.739 50.000 4.43 4.43 0.00 4.52
3696 3901 2.424956 CCTAAAACTGGATCTGGCTTGC 59.575 50.000 0.00 0.00 0.00 4.01
3697 3902 3.019564 CCCTAAAACTGGATCTGGCTTG 58.980 50.000 0.00 0.00 0.00 4.01
3698 3903 2.024941 CCCCTAAAACTGGATCTGGCTT 60.025 50.000 0.00 0.00 0.00 4.35
3699 3904 1.566231 CCCCTAAAACTGGATCTGGCT 59.434 52.381 0.00 0.00 0.00 4.75
3700 3905 2.024306 GCCCCTAAAACTGGATCTGGC 61.024 57.143 0.00 0.00 0.00 4.85
3701 3906 1.747206 CGCCCCTAAAACTGGATCTGG 60.747 57.143 0.00 0.00 0.00 3.86
3702 3907 1.668419 CGCCCCTAAAACTGGATCTG 58.332 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.