Multiple sequence alignment - TraesCS2A01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G280800 chr2A 100.000 3724 0 0 1 3724 469121359 469125082 0.000000e+00 6878
1 TraesCS2A01G280800 chr2A 99.062 320 2 1 106 425 538368832 538369150 1.160000e-159 573
2 TraesCS2A01G280800 chr2A 91.358 162 9 2 2673 2833 653949825 653949982 2.250000e-52 217
3 TraesCS2A01G280800 chr2A 100.000 101 0 0 1 101 469121680 469121780 1.770000e-43 187
4 TraesCS2A01G280800 chr2A 100.000 101 0 0 1 101 538369047 538369147 1.770000e-43 187
5 TraesCS2A01G280800 chr2A 100.000 101 0 0 1 101 572433885 572433985 1.770000e-43 187
6 TraesCS2A01G280800 chr2A 100.000 101 0 0 1 101 755044697 755044797 1.770000e-43 187
7 TraesCS2A01G280800 chr2B 93.321 1632 55 19 1694 3307 417644644 417646239 0.000000e+00 2361
8 TraesCS2A01G280800 chr2B 93.707 1176 52 12 2563 3722 417652995 417654164 0.000000e+00 1742
9 TraesCS2A01G280800 chr2B 88.583 1235 67 34 458 1669 417643341 417644524 0.000000e+00 1432
10 TraesCS2A01G280800 chr2B 93.750 432 16 6 3296 3722 417646300 417646725 4.060000e-179 638
11 TraesCS2A01G280800 chr2B 92.337 261 2 4 1 261 775127879 775127637 4.570000e-94 355
12 TraesCS2A01G280800 chr2D 95.928 1326 40 6 2190 3510 351373641 351374957 0.000000e+00 2137
13 TraesCS2A01G280800 chr2D 90.246 1138 42 31 541 1661 351366000 351367085 0.000000e+00 1423
14 TraesCS2A01G280800 chr2D 91.099 382 15 10 1694 2069 351367212 351367580 2.000000e-137 499
15 TraesCS2A01G280800 chr2D 90.830 229 16 5 3495 3722 351377201 351377425 6.040000e-78 302
16 TraesCS2A01G280800 chr2D 96.923 130 2 1 2067 2194 351367661 351367790 2.250000e-52 217
17 TraesCS2A01G280800 chr7A 98.232 396 5 1 31 426 721820174 721820567 0.000000e+00 691
18 TraesCS2A01G280800 chr3A 99.383 324 1 1 102 425 438369760 438369438 1.490000e-163 586
19 TraesCS2A01G280800 chr3B 99.071 323 2 1 102 424 549387309 549387630 2.490000e-161 579
20 TraesCS2A01G280800 chr3B 97.892 332 6 1 95 425 718797943 718797612 1.160000e-159 573
21 TraesCS2A01G280800 chr3B 98.182 330 3 3 102 430 791088446 791088773 1.160000e-159 573
22 TraesCS2A01G280800 chr3B 100.000 101 0 0 1 101 28837657 28837557 1.770000e-43 187
23 TraesCS2A01G280800 chr3B 100.000 101 0 0 1 101 114139709 114139609 1.770000e-43 187
24 TraesCS2A01G280800 chr3B 100.000 101 0 0 1 101 383919818 383919718 1.770000e-43 187
25 TraesCS2A01G280800 chr6A 99.068 322 1 1 102 423 396296156 396295837 8.970000e-161 577
26 TraesCS2A01G280800 chr6B 97.892 332 3 2 98 425 40070852 40071183 4.170000e-159 571
27 TraesCS2A01G280800 chr6B 92.308 52 4 0 3579 3630 698120264 698120213 1.430000e-09 75
28 TraesCS2A01G280800 chr4A 98.462 325 3 2 101 425 678222088 678221766 4.170000e-159 571
29 TraesCS2A01G280800 chr4A 87.037 162 7 6 2673 2833 622585246 622585098 1.780000e-38 171
30 TraesCS2A01G280800 chr6D 93.210 162 6 2 2673 2833 75847252 75847409 2.240000e-57 233
31 TraesCS2A01G280800 chr7D 91.515 165 10 3 2673 2833 630665929 630666093 1.350000e-54 224
32 TraesCS2A01G280800 chr7D 91.515 165 10 3 2673 2833 630675335 630675499 1.350000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G280800 chr2A 469121359 469125082 3723 False 3532.5 6878 100.000000 1 3724 2 chr2A.!!$F4 3723
1 TraesCS2A01G280800 chr2B 417652995 417654164 1169 False 1742.0 1742 93.707000 2563 3722 1 chr2B.!!$F1 1159
2 TraesCS2A01G280800 chr2B 417643341 417646725 3384 False 1477.0 2361 91.884667 458 3722 3 chr2B.!!$F2 3264
3 TraesCS2A01G280800 chr2D 351373641 351377425 3784 False 1219.5 2137 93.379000 2190 3722 2 chr2D.!!$F2 1532
4 TraesCS2A01G280800 chr2D 351366000 351367790 1790 False 713.0 1423 92.756000 541 2194 3 chr2D.!!$F1 1653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.035056 GTGCTAGTGCCCATGGAGTT 60.035 55.0 15.22 0.00 38.71 3.01 F
411 412 0.035056 GTGCTAGTGCCCATGGAGTT 60.035 55.0 15.22 0.00 38.71 3.01 F
447 448 0.036306 AATTGGACAGGGTCGACCAC 59.964 55.0 34.40 23.29 43.89 4.16 F
630 631 0.258194 GTACTCTCGGAGGGAAGGGA 59.742 60.0 12.82 0.00 33.35 4.20 F
632 633 0.324830 ACTCTCGGAGGGAAGGGAAG 60.325 60.0 12.82 0.00 33.35 3.46 F
1314 1352 0.733150 GAATTTAGTGGGACGGCTGC 59.267 55.0 0.00 0.00 0.00 5.25 F
2431 2673 0.322975 AGCACACCAGATCACCAGAC 59.677 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1101 1120 0.039978 CTGGGCTAGCGACGATACTG 60.040 60.000 9.00 0.00 0.00 2.74 R
1587 1627 0.179108 GGACTCATCCGTCCGAAAGG 60.179 60.000 0.00 0.00 43.56 3.11 R
1717 1860 0.597568 TCATGCCTTGCCTTTTGACG 59.402 50.000 0.00 0.00 0.00 4.35 R
2009 2158 1.278985 ACGATGAGGCATGGAAGAACA 59.721 47.619 0.00 0.00 0.00 3.18 R
2431 2673 1.458220 CGCTGCGAATGATGTTTGCG 61.458 55.000 18.66 0.00 36.41 4.85 R
2685 2927 0.321653 TTCTTCTTCTTCCGGCAGCC 60.322 55.000 0.00 0.00 0.00 4.85 R
3434 3772 2.145397 TGATGGAGCGGTACTCTCTT 57.855 50.000 0.00 4.49 45.48 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.136123 TCGATCCACGTCGGGGAC 61.136 66.667 20.83 11.97 41.74 4.46
41 42 6.388435 GAATTTCTGGAATTCTCATGAGGG 57.612 41.667 22.42 0.00 46.59 4.30
42 43 5.722172 ATTTCTGGAATTCTCATGAGGGA 57.278 39.130 22.42 12.00 0.00 4.20
43 44 5.722172 TTTCTGGAATTCTCATGAGGGAT 57.278 39.130 22.42 13.69 0.00 3.85
44 45 4.701651 TCTGGAATTCTCATGAGGGATG 57.298 45.455 22.42 7.14 0.00 3.51
45 46 3.147629 CTGGAATTCTCATGAGGGATGC 58.852 50.000 22.42 14.53 31.32 3.91
46 47 2.781757 TGGAATTCTCATGAGGGATGCT 59.218 45.455 22.42 3.80 31.32 3.79
47 48 3.203710 TGGAATTCTCATGAGGGATGCTT 59.796 43.478 22.42 7.33 31.32 3.91
48 49 3.819902 GGAATTCTCATGAGGGATGCTTC 59.180 47.826 22.42 14.34 31.32 3.86
49 50 4.446023 GGAATTCTCATGAGGGATGCTTCT 60.446 45.833 22.42 2.49 31.32 2.85
50 51 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
51 52 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
52 53 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
53 54 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
54 55 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
55 56 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
56 57 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
57 58 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
58 59 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
59 60 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
60 61 7.565190 TGAGGGATGCTTCTTCTATATCAAT 57.435 36.000 0.00 0.00 0.00 2.57
61 62 8.670521 TGAGGGATGCTTCTTCTATATCAATA 57.329 34.615 0.00 0.00 0.00 1.90
62 63 9.104713 TGAGGGATGCTTCTTCTATATCAATAA 57.895 33.333 0.00 0.00 0.00 1.40
63 64 9.950496 GAGGGATGCTTCTTCTATATCAATAAA 57.050 33.333 0.00 0.00 0.00 1.40
68 69 8.958119 TGCTTCTTCTATATCAATAAAACCGT 57.042 30.769 0.00 0.00 0.00 4.83
69 70 8.826710 TGCTTCTTCTATATCAATAAAACCGTG 58.173 33.333 0.00 0.00 0.00 4.94
70 71 8.283291 GCTTCTTCTATATCAATAAAACCGTGG 58.717 37.037 0.00 0.00 0.00 4.94
71 72 8.671384 TTCTTCTATATCAATAAAACCGTGGG 57.329 34.615 0.00 0.00 0.00 4.61
72 73 7.798071 TCTTCTATATCAATAAAACCGTGGGT 58.202 34.615 0.00 0.00 37.65 4.51
73 74 7.713507 TCTTCTATATCAATAAAACCGTGGGTG 59.286 37.037 0.00 0.00 35.34 4.61
74 75 4.911514 ATATCAATAAAACCGTGGGTGC 57.088 40.909 0.00 0.00 35.34 5.01
75 76 2.279935 TCAATAAAACCGTGGGTGCT 57.720 45.000 0.00 0.00 35.34 4.40
76 77 3.420300 TCAATAAAACCGTGGGTGCTA 57.580 42.857 0.00 0.00 35.34 3.49
77 78 3.340034 TCAATAAAACCGTGGGTGCTAG 58.660 45.455 0.00 0.00 35.34 3.42
78 79 3.078837 CAATAAAACCGTGGGTGCTAGT 58.921 45.455 0.00 0.00 35.34 2.57
79 80 2.172851 TAAAACCGTGGGTGCTAGTG 57.827 50.000 0.00 0.00 35.34 2.74
80 81 1.170290 AAAACCGTGGGTGCTAGTGC 61.170 55.000 0.00 0.00 35.34 4.40
81 82 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
82 83 4.778143 CCGTGGGTGCTAGTGCCC 62.778 72.222 14.48 14.48 45.04 5.36
86 87 2.124151 GGGTGCTAGTGCCCATGG 60.124 66.667 15.91 4.14 44.23 3.66
87 88 2.679342 GGGTGCTAGTGCCCATGGA 61.679 63.158 15.22 0.00 44.23 3.41
88 89 1.153086 GGTGCTAGTGCCCATGGAG 60.153 63.158 15.22 2.70 38.71 3.86
89 90 1.604378 GTGCTAGTGCCCATGGAGT 59.396 57.895 15.22 0.00 38.71 3.85
90 91 0.035056 GTGCTAGTGCCCATGGAGTT 60.035 55.000 15.22 0.00 38.71 3.01
91 92 0.698238 TGCTAGTGCCCATGGAGTTT 59.302 50.000 15.22 0.00 38.71 2.66
92 93 1.340017 TGCTAGTGCCCATGGAGTTTC 60.340 52.381 15.22 0.00 38.71 2.78
93 94 1.340017 GCTAGTGCCCATGGAGTTTCA 60.340 52.381 15.22 0.00 0.00 2.69
94 95 2.684927 GCTAGTGCCCATGGAGTTTCAT 60.685 50.000 15.22 0.00 0.00 2.57
95 96 2.610438 AGTGCCCATGGAGTTTCATT 57.390 45.000 15.22 0.00 0.00 2.57
96 97 2.893424 AGTGCCCATGGAGTTTCATTT 58.107 42.857 15.22 0.00 0.00 2.32
97 98 3.242011 AGTGCCCATGGAGTTTCATTTT 58.758 40.909 15.22 0.00 0.00 1.82
98 99 3.647590 AGTGCCCATGGAGTTTCATTTTT 59.352 39.130 15.22 0.00 0.00 1.94
113 114 4.988744 TTTTTGAGGACGTGGGCA 57.011 50.000 0.00 0.00 0.00 5.36
114 115 3.430473 TTTTTGAGGACGTGGGCAT 57.570 47.368 0.00 0.00 0.00 4.40
115 116 2.570415 TTTTTGAGGACGTGGGCATA 57.430 45.000 0.00 0.00 0.00 3.14
116 117 2.107950 TTTTGAGGACGTGGGCATAG 57.892 50.000 0.00 0.00 0.00 2.23
117 118 0.392461 TTTGAGGACGTGGGCATAGC 60.392 55.000 0.00 0.00 0.00 2.97
127 128 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
128 129 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
139 140 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
140 141 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
141 142 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
142 143 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
143 144 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
144 145 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
145 146 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
146 147 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
147 148 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
148 149 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
149 150 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
150 151 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
151 152 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
152 153 3.350912 GCGCATGATTGTAAACCTAACG 58.649 45.455 0.30 0.00 0.00 3.18
153 154 3.062909 GCGCATGATTGTAAACCTAACGA 59.937 43.478 0.30 0.00 0.00 3.85
154 155 4.574759 CGCATGATTGTAAACCTAACGAC 58.425 43.478 0.00 0.00 0.00 4.34
155 156 4.493545 CGCATGATTGTAAACCTAACGACC 60.494 45.833 0.00 0.00 0.00 4.79
156 157 4.393680 GCATGATTGTAAACCTAACGACCA 59.606 41.667 0.00 0.00 0.00 4.02
157 158 5.447279 GCATGATTGTAAACCTAACGACCAG 60.447 44.000 0.00 0.00 0.00 4.00
158 159 5.471556 TGATTGTAAACCTAACGACCAGA 57.528 39.130 0.00 0.00 0.00 3.86
159 160 5.475719 TGATTGTAAACCTAACGACCAGAG 58.524 41.667 0.00 0.00 0.00 3.35
160 161 4.942761 TTGTAAACCTAACGACCAGAGT 57.057 40.909 0.00 0.00 0.00 3.24
161 162 4.942761 TGTAAACCTAACGACCAGAGTT 57.057 40.909 0.00 0.00 35.75 3.01
162 163 4.874970 TGTAAACCTAACGACCAGAGTTC 58.125 43.478 0.00 0.00 33.42 3.01
163 164 2.719426 AACCTAACGACCAGAGTTCG 57.281 50.000 0.00 0.00 33.42 3.95
164 165 1.901591 ACCTAACGACCAGAGTTCGA 58.098 50.000 0.00 0.00 33.42 3.71
165 166 2.444421 ACCTAACGACCAGAGTTCGAT 58.556 47.619 0.00 0.00 33.42 3.59
166 167 2.422832 ACCTAACGACCAGAGTTCGATC 59.577 50.000 0.00 0.00 33.42 3.69
167 168 2.223525 CCTAACGACCAGAGTTCGATCC 60.224 54.545 0.00 0.00 33.42 3.36
168 169 1.254026 AACGACCAGAGTTCGATCCA 58.746 50.000 0.00 0.00 0.00 3.41
169 170 0.526662 ACGACCAGAGTTCGATCCAC 59.473 55.000 0.00 0.00 0.00 4.02
170 171 0.523546 CGACCAGAGTTCGATCCACG 60.524 60.000 0.00 0.00 44.09 4.94
171 172 0.526662 GACCAGAGTTCGATCCACGT 59.473 55.000 0.00 0.00 43.13 4.49
172 173 0.526662 ACCAGAGTTCGATCCACGTC 59.473 55.000 0.00 0.00 43.13 4.34
173 174 0.523546 CCAGAGTTCGATCCACGTCG 60.524 60.000 0.00 0.00 43.13 5.12
174 175 0.523546 CAGAGTTCGATCCACGTCGG 60.524 60.000 0.00 0.00 41.74 4.79
175 176 1.226603 GAGTTCGATCCACGTCGGG 60.227 63.158 0.00 0.00 41.74 5.14
176 177 1.930908 GAGTTCGATCCACGTCGGGT 61.931 60.000 0.00 0.00 41.74 5.28
177 178 0.677731 AGTTCGATCCACGTCGGGTA 60.678 55.000 0.00 0.00 41.74 3.69
178 179 0.524180 GTTCGATCCACGTCGGGTAC 60.524 60.000 0.00 0.00 41.74 3.34
193 194 4.531659 CGGGTACGAATTTCTGGAATTC 57.468 45.455 10.77 10.77 46.62 2.17
202 203 6.388435 GAATTTCTGGAATTCTCATGAGGG 57.612 41.667 22.42 0.00 46.59 4.30
203 204 5.722172 ATTTCTGGAATTCTCATGAGGGA 57.278 39.130 22.42 12.00 0.00 4.20
204 205 5.722172 TTTCTGGAATTCTCATGAGGGAT 57.278 39.130 22.42 13.69 0.00 3.85
205 206 4.701651 TCTGGAATTCTCATGAGGGATG 57.298 45.455 22.42 7.14 0.00 3.51
206 207 3.147629 CTGGAATTCTCATGAGGGATGC 58.852 50.000 22.42 14.53 31.32 3.91
207 208 2.781757 TGGAATTCTCATGAGGGATGCT 59.218 45.455 22.42 3.80 31.32 3.79
208 209 3.203710 TGGAATTCTCATGAGGGATGCTT 59.796 43.478 22.42 7.33 31.32 3.91
209 210 3.819902 GGAATTCTCATGAGGGATGCTTC 59.180 47.826 22.42 14.34 31.32 3.86
210 211 4.446023 GGAATTCTCATGAGGGATGCTTCT 60.446 45.833 22.42 2.49 31.32 2.85
211 212 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
212 213 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
213 214 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
214 215 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
215 216 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
216 217 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
217 218 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
218 219 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
219 220 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
220 221 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
221 222 7.565190 TGAGGGATGCTTCTTCTATATCAAT 57.435 36.000 0.00 0.00 0.00 2.57
222 223 8.670521 TGAGGGATGCTTCTTCTATATCAATA 57.329 34.615 0.00 0.00 0.00 1.90
223 224 9.104713 TGAGGGATGCTTCTTCTATATCAATAA 57.895 33.333 0.00 0.00 0.00 1.40
224 225 9.950496 GAGGGATGCTTCTTCTATATCAATAAA 57.050 33.333 0.00 0.00 0.00 1.40
229 230 8.958119 TGCTTCTTCTATATCAATAAAACCGT 57.042 30.769 0.00 0.00 0.00 4.83
230 231 8.826710 TGCTTCTTCTATATCAATAAAACCGTG 58.173 33.333 0.00 0.00 0.00 4.94
231 232 8.283291 GCTTCTTCTATATCAATAAAACCGTGG 58.717 37.037 0.00 0.00 0.00 4.94
232 233 8.671384 TTCTTCTATATCAATAAAACCGTGGG 57.329 34.615 0.00 0.00 0.00 4.61
233 234 7.798071 TCTTCTATATCAATAAAACCGTGGGT 58.202 34.615 0.00 0.00 37.65 4.51
234 235 7.713507 TCTTCTATATCAATAAAACCGTGGGTG 59.286 37.037 0.00 0.00 35.34 4.61
235 236 4.911514 ATATCAATAAAACCGTGGGTGC 57.088 40.909 0.00 0.00 35.34 5.01
236 237 2.279935 TCAATAAAACCGTGGGTGCT 57.720 45.000 0.00 0.00 35.34 4.40
237 238 3.420300 TCAATAAAACCGTGGGTGCTA 57.580 42.857 0.00 0.00 35.34 3.49
238 239 3.340034 TCAATAAAACCGTGGGTGCTAG 58.660 45.455 0.00 0.00 35.34 3.42
239 240 3.078837 CAATAAAACCGTGGGTGCTAGT 58.921 45.455 0.00 0.00 35.34 2.57
240 241 2.172851 TAAAACCGTGGGTGCTAGTG 57.827 50.000 0.00 0.00 35.34 2.74
241 242 1.170290 AAAACCGTGGGTGCTAGTGC 61.170 55.000 0.00 0.00 35.34 4.40
242 243 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
243 244 4.778143 CCGTGGGTGCTAGTGCCC 62.778 72.222 14.48 14.48 45.04 5.36
247 248 2.124151 GGGTGCTAGTGCCCATGG 60.124 66.667 15.91 4.14 44.23 3.66
248 249 2.679342 GGGTGCTAGTGCCCATGGA 61.679 63.158 15.22 0.00 44.23 3.41
249 250 1.153086 GGTGCTAGTGCCCATGGAG 60.153 63.158 15.22 2.70 38.71 3.86
250 251 1.604378 GTGCTAGTGCCCATGGAGT 59.396 57.895 15.22 0.00 38.71 3.85
251 252 0.035056 GTGCTAGTGCCCATGGAGTT 60.035 55.000 15.22 0.00 38.71 3.01
252 253 0.698238 TGCTAGTGCCCATGGAGTTT 59.302 50.000 15.22 0.00 38.71 2.66
253 254 1.340017 TGCTAGTGCCCATGGAGTTTC 60.340 52.381 15.22 0.00 38.71 2.78
254 255 1.340017 GCTAGTGCCCATGGAGTTTCA 60.340 52.381 15.22 0.00 0.00 2.69
255 256 2.684927 GCTAGTGCCCATGGAGTTTCAT 60.685 50.000 15.22 0.00 0.00 2.57
256 257 2.610438 AGTGCCCATGGAGTTTCATT 57.390 45.000 15.22 0.00 0.00 2.57
257 258 2.893424 AGTGCCCATGGAGTTTCATTT 58.107 42.857 15.22 0.00 0.00 2.32
258 259 3.242011 AGTGCCCATGGAGTTTCATTTT 58.758 40.909 15.22 0.00 0.00 1.82
259 260 3.647590 AGTGCCCATGGAGTTTCATTTTT 59.352 39.130 15.22 0.00 0.00 1.94
273 274 4.988744 TTTTTGAGGACGTGGGCA 57.011 50.000 0.00 0.00 0.00 5.36
274 275 3.430473 TTTTTGAGGACGTGGGCAT 57.570 47.368 0.00 0.00 0.00 4.40
275 276 2.570415 TTTTTGAGGACGTGGGCATA 57.430 45.000 0.00 0.00 0.00 3.14
276 277 2.107950 TTTTGAGGACGTGGGCATAG 57.892 50.000 0.00 0.00 0.00 2.23
277 278 0.392461 TTTGAGGACGTGGGCATAGC 60.392 55.000 0.00 0.00 0.00 2.97
287 288 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
288 289 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
299 300 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
300 301 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
301 302 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
302 303 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
303 304 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
304 305 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
305 306 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
306 307 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
307 308 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
308 309 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
309 310 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
310 311 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
311 312 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
312 313 3.350912 GCGCATGATTGTAAACCTAACG 58.649 45.455 0.30 0.00 0.00 3.18
313 314 3.062909 GCGCATGATTGTAAACCTAACGA 59.937 43.478 0.30 0.00 0.00 3.85
314 315 4.574759 CGCATGATTGTAAACCTAACGAC 58.425 43.478 0.00 0.00 0.00 4.34
315 316 4.493545 CGCATGATTGTAAACCTAACGACC 60.494 45.833 0.00 0.00 0.00 4.79
316 317 4.393680 GCATGATTGTAAACCTAACGACCA 59.606 41.667 0.00 0.00 0.00 4.02
317 318 5.447279 GCATGATTGTAAACCTAACGACCAG 60.447 44.000 0.00 0.00 0.00 4.00
318 319 5.471556 TGATTGTAAACCTAACGACCAGA 57.528 39.130 0.00 0.00 0.00 3.86
319 320 5.475719 TGATTGTAAACCTAACGACCAGAG 58.524 41.667 0.00 0.00 0.00 3.35
320 321 4.942761 TTGTAAACCTAACGACCAGAGT 57.057 40.909 0.00 0.00 0.00 3.24
321 322 4.942761 TGTAAACCTAACGACCAGAGTT 57.057 40.909 0.00 0.00 35.75 3.01
322 323 4.874970 TGTAAACCTAACGACCAGAGTTC 58.125 43.478 0.00 0.00 33.42 3.01
323 324 2.719426 AACCTAACGACCAGAGTTCG 57.281 50.000 0.00 0.00 33.42 3.95
324 325 1.901591 ACCTAACGACCAGAGTTCGA 58.098 50.000 0.00 0.00 33.42 3.71
325 326 2.444421 ACCTAACGACCAGAGTTCGAT 58.556 47.619 0.00 0.00 33.42 3.59
326 327 2.422832 ACCTAACGACCAGAGTTCGATC 59.577 50.000 0.00 0.00 33.42 3.69
327 328 2.223525 CCTAACGACCAGAGTTCGATCC 60.224 54.545 0.00 0.00 33.42 3.36
328 329 1.254026 AACGACCAGAGTTCGATCCA 58.746 50.000 0.00 0.00 0.00 3.41
329 330 0.526662 ACGACCAGAGTTCGATCCAC 59.473 55.000 0.00 0.00 0.00 4.02
330 331 0.523546 CGACCAGAGTTCGATCCACG 60.524 60.000 0.00 0.00 44.09 4.94
331 332 0.526662 GACCAGAGTTCGATCCACGT 59.473 55.000 0.00 0.00 43.13 4.49
332 333 0.526662 ACCAGAGTTCGATCCACGTC 59.473 55.000 0.00 0.00 43.13 4.34
333 334 0.523546 CCAGAGTTCGATCCACGTCG 60.524 60.000 0.00 0.00 43.13 5.12
334 335 0.523546 CAGAGTTCGATCCACGTCGG 60.524 60.000 0.00 0.00 41.74 4.79
335 336 1.226603 GAGTTCGATCCACGTCGGG 60.227 63.158 0.00 0.00 41.74 5.14
336 337 2.202703 GTTCGATCCACGTCGGGG 60.203 66.667 7.38 7.38 41.74 5.73
337 338 2.361483 TTCGATCCACGTCGGGGA 60.361 61.111 20.66 20.66 41.74 4.81
338 339 2.703798 TTCGATCCACGTCGGGGAC 61.704 63.158 20.83 11.97 41.74 4.46
362 363 6.388435 GAATTTCTGGAATTCTCATGAGGG 57.612 41.667 22.42 0.00 46.59 4.30
363 364 5.722172 ATTTCTGGAATTCTCATGAGGGA 57.278 39.130 22.42 12.00 0.00 4.20
364 365 5.722172 TTTCTGGAATTCTCATGAGGGAT 57.278 39.130 22.42 13.69 0.00 3.85
365 366 4.701651 TCTGGAATTCTCATGAGGGATG 57.298 45.455 22.42 7.14 0.00 3.51
366 367 3.147629 CTGGAATTCTCATGAGGGATGC 58.852 50.000 22.42 14.53 31.32 3.91
367 368 2.781757 TGGAATTCTCATGAGGGATGCT 59.218 45.455 22.42 3.80 31.32 3.79
368 369 3.203710 TGGAATTCTCATGAGGGATGCTT 59.796 43.478 22.42 7.33 31.32 3.91
369 370 3.819902 GGAATTCTCATGAGGGATGCTTC 59.180 47.826 22.42 14.34 31.32 3.86
370 371 4.446023 GGAATTCTCATGAGGGATGCTTCT 60.446 45.833 22.42 2.49 31.32 2.85
371 372 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
372 373 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
373 374 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
374 375 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
375 376 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
376 377 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
377 378 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
378 379 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
379 380 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
380 381 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
381 382 7.565190 TGAGGGATGCTTCTTCTATATCAAT 57.435 36.000 0.00 0.00 0.00 2.57
382 383 8.670521 TGAGGGATGCTTCTTCTATATCAATA 57.329 34.615 0.00 0.00 0.00 1.90
383 384 9.104713 TGAGGGATGCTTCTTCTATATCAATAA 57.895 33.333 0.00 0.00 0.00 1.40
384 385 9.950496 GAGGGATGCTTCTTCTATATCAATAAA 57.050 33.333 0.00 0.00 0.00 1.40
389 390 8.958119 TGCTTCTTCTATATCAATAAAACCGT 57.042 30.769 0.00 0.00 0.00 4.83
390 391 8.826710 TGCTTCTTCTATATCAATAAAACCGTG 58.173 33.333 0.00 0.00 0.00 4.94
391 392 8.283291 GCTTCTTCTATATCAATAAAACCGTGG 58.717 37.037 0.00 0.00 0.00 4.94
392 393 8.671384 TTCTTCTATATCAATAAAACCGTGGG 57.329 34.615 0.00 0.00 0.00 4.61
393 394 7.798071 TCTTCTATATCAATAAAACCGTGGGT 58.202 34.615 0.00 0.00 37.65 4.51
394 395 7.713507 TCTTCTATATCAATAAAACCGTGGGTG 59.286 37.037 0.00 0.00 35.34 4.61
395 396 4.911514 ATATCAATAAAACCGTGGGTGC 57.088 40.909 0.00 0.00 35.34 5.01
396 397 2.279935 TCAATAAAACCGTGGGTGCT 57.720 45.000 0.00 0.00 35.34 4.40
397 398 3.420300 TCAATAAAACCGTGGGTGCTA 57.580 42.857 0.00 0.00 35.34 3.49
398 399 3.340034 TCAATAAAACCGTGGGTGCTAG 58.660 45.455 0.00 0.00 35.34 3.42
399 400 3.078837 CAATAAAACCGTGGGTGCTAGT 58.921 45.455 0.00 0.00 35.34 2.57
400 401 2.172851 TAAAACCGTGGGTGCTAGTG 57.827 50.000 0.00 0.00 35.34 2.74
401 402 1.170290 AAAACCGTGGGTGCTAGTGC 61.170 55.000 0.00 0.00 35.34 4.40
402 403 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
403 404 4.778143 CCGTGGGTGCTAGTGCCC 62.778 72.222 14.48 14.48 45.04 5.36
407 408 2.124151 GGGTGCTAGTGCCCATGG 60.124 66.667 15.91 4.14 44.23 3.66
408 409 2.679342 GGGTGCTAGTGCCCATGGA 61.679 63.158 15.22 0.00 44.23 3.41
409 410 1.153086 GGTGCTAGTGCCCATGGAG 60.153 63.158 15.22 2.70 38.71 3.86
410 411 1.604378 GTGCTAGTGCCCATGGAGT 59.396 57.895 15.22 0.00 38.71 3.85
411 412 0.035056 GTGCTAGTGCCCATGGAGTT 60.035 55.000 15.22 0.00 38.71 3.01
412 413 0.698238 TGCTAGTGCCCATGGAGTTT 59.302 50.000 15.22 0.00 38.71 2.66
413 414 1.340017 TGCTAGTGCCCATGGAGTTTC 60.340 52.381 15.22 0.00 38.71 2.78
414 415 1.340017 GCTAGTGCCCATGGAGTTTCA 60.340 52.381 15.22 0.00 0.00 2.69
415 416 2.684927 GCTAGTGCCCATGGAGTTTCAT 60.685 50.000 15.22 0.00 0.00 2.57
416 417 2.610438 AGTGCCCATGGAGTTTCATT 57.390 45.000 15.22 0.00 0.00 2.57
417 418 2.893424 AGTGCCCATGGAGTTTCATTT 58.107 42.857 15.22 0.00 0.00 2.32
418 419 3.242011 AGTGCCCATGGAGTTTCATTTT 58.758 40.909 15.22 0.00 0.00 1.82
419 420 3.647590 AGTGCCCATGGAGTTTCATTTTT 59.352 39.130 15.22 0.00 0.00 1.94
444 445 6.746745 TTTTAATAATTGGACAGGGTCGAC 57.253 37.500 7.13 7.13 32.65 4.20
445 446 3.277142 AATAATTGGACAGGGTCGACC 57.723 47.619 27.04 27.04 40.67 4.79
446 447 1.646912 TAATTGGACAGGGTCGACCA 58.353 50.000 34.40 13.94 43.89 4.02
447 448 0.036306 AATTGGACAGGGTCGACCAC 59.964 55.000 34.40 23.29 43.89 4.16
448 449 1.838073 ATTGGACAGGGTCGACCACC 61.838 60.000 34.40 27.77 45.97 4.61
470 471 7.871463 CCACCATAGTAGTATTTGGTAGTTAGC 59.129 40.741 3.08 0.00 40.44 3.09
508 509 3.409851 TTCGTACGTACTGCTGTATGG 57.590 47.619 22.55 13.25 39.36 2.74
628 629 2.406205 CGTACTCTCGGAGGGAAGG 58.594 63.158 12.82 0.00 33.35 3.46
629 630 1.102222 CGTACTCTCGGAGGGAAGGG 61.102 65.000 12.82 0.00 33.35 3.95
630 631 0.258194 GTACTCTCGGAGGGAAGGGA 59.742 60.000 12.82 0.00 33.35 4.20
631 632 1.005228 TACTCTCGGAGGGAAGGGAA 58.995 55.000 12.82 0.00 33.35 3.97
632 633 0.324830 ACTCTCGGAGGGAAGGGAAG 60.325 60.000 12.82 0.00 33.35 3.46
633 634 1.681486 CTCTCGGAGGGAAGGGAAGC 61.681 65.000 0.00 0.00 0.00 3.86
634 635 3.075005 TCGGAGGGAAGGGAAGCG 61.075 66.667 0.00 0.00 0.00 4.68
635 636 4.840005 CGGAGGGAAGGGAAGCGC 62.840 72.222 0.00 0.00 0.00 5.92
636 637 4.491409 GGAGGGAAGGGAAGCGCC 62.491 72.222 2.29 0.00 0.00 6.53
637 638 3.717294 GAGGGAAGGGAAGCGCCA 61.717 66.667 2.29 0.00 38.95 5.69
638 639 3.978571 GAGGGAAGGGAAGCGCCAC 62.979 68.421 2.29 0.00 38.95 5.01
724 729 2.123121 CCCCCTCCCCTACCGTAC 60.123 72.222 0.00 0.00 0.00 3.67
725 730 2.123121 CCCCTCCCCTACCGTACC 60.123 72.222 0.00 0.00 0.00 3.34
726 731 2.520260 CCCTCCCCTACCGTACCG 60.520 72.222 0.00 0.00 0.00 4.02
727 732 2.597340 CCTCCCCTACCGTACCGA 59.403 66.667 0.00 0.00 0.00 4.69
728 733 1.825622 CCTCCCCTACCGTACCGAC 60.826 68.421 0.00 0.00 0.00 4.79
900 905 6.570672 TCTCGACTACTTGCTTTTCTCTTA 57.429 37.500 0.00 0.00 0.00 2.10
1190 1209 5.049886 ACCGTTACTTTCTTCATTTCCGTTC 60.050 40.000 0.00 0.00 0.00 3.95
1191 1210 5.049954 CCGTTACTTTCTTCATTTCCGTTCA 60.050 40.000 0.00 0.00 0.00 3.18
1192 1211 6.423862 CGTTACTTTCTTCATTTCCGTTCAA 58.576 36.000 0.00 0.00 0.00 2.69
1193 1212 7.075741 CGTTACTTTCTTCATTTCCGTTCAAT 58.924 34.615 0.00 0.00 0.00 2.57
1194 1213 7.268447 CGTTACTTTCTTCATTTCCGTTCAATC 59.732 37.037 0.00 0.00 0.00 2.67
1197 1216 7.141363 ACTTTCTTCATTTCCGTTCAATCTTG 58.859 34.615 0.00 0.00 0.00 3.02
1198 1217 5.627499 TCTTCATTTCCGTTCAATCTTGG 57.373 39.130 0.00 0.00 0.00 3.61
1199 1218 5.312895 TCTTCATTTCCGTTCAATCTTGGA 58.687 37.500 0.00 0.00 0.00 3.53
1200 1219 5.181245 TCTTCATTTCCGTTCAATCTTGGAC 59.819 40.000 0.00 0.00 33.22 4.02
1202 1221 1.803334 TTCCGTTCAATCTTGGACCG 58.197 50.000 0.00 0.00 32.93 4.79
1203 1222 0.970640 TCCGTTCAATCTTGGACCGA 59.029 50.000 0.00 0.00 32.93 4.69
1205 1224 1.076332 CGTTCAATCTTGGACCGACC 58.924 55.000 0.00 0.00 32.93 4.79
1215 1234 1.890876 TGGACCGACCACAAAGATTG 58.109 50.000 0.00 0.00 44.64 2.67
1227 1263 6.980593 ACCACAAAGATTGATTCGATTCAAA 58.019 32.000 22.43 9.72 38.98 2.69
1265 1301 5.072600 TCCTAGTGCTTCCCTTTTCTGTTTA 59.927 40.000 0.00 0.00 0.00 2.01
1266 1302 5.946377 CCTAGTGCTTCCCTTTTCTGTTTAT 59.054 40.000 0.00 0.00 0.00 1.40
1314 1352 0.733150 GAATTTAGTGGGACGGCTGC 59.267 55.000 0.00 0.00 0.00 5.25
1350 1388 7.065324 CGAAATTAACTAAGTTATCCTGCCACA 59.935 37.037 0.00 0.00 0.00 4.17
1490 1528 5.335426 CCCATCAGATTTATTCATTCCTGCG 60.335 44.000 0.00 0.00 0.00 5.18
1492 1530 4.198530 TCAGATTTATTCATTCCTGCGCA 58.801 39.130 10.98 10.98 0.00 6.09
1587 1627 2.797156 CACACAGTATCGGAGCTAATGC 59.203 50.000 0.00 0.00 40.05 3.56
1600 1640 1.810412 GCTAATGCCTTTCGGACGGAT 60.810 52.381 0.00 0.00 0.00 4.18
1661 1701 5.105146 ACTCTTTTGCTCCATCAGGTACTAG 60.105 44.000 0.00 0.00 36.02 2.57
1662 1702 4.777896 TCTTTTGCTCCATCAGGTACTAGT 59.222 41.667 0.00 0.00 36.02 2.57
1663 1703 5.955959 TCTTTTGCTCCATCAGGTACTAGTA 59.044 40.000 0.00 0.00 36.02 1.82
1664 1704 5.593679 TTTGCTCCATCAGGTACTAGTAC 57.406 43.478 22.53 22.53 36.02 2.73
1665 1705 4.521536 TGCTCCATCAGGTACTAGTACT 57.478 45.455 27.71 14.14 36.02 2.73
1666 1706 5.641789 TGCTCCATCAGGTACTAGTACTA 57.358 43.478 27.71 16.35 36.02 1.82
1667 1707 6.202202 TGCTCCATCAGGTACTAGTACTAT 57.798 41.667 27.71 17.60 36.02 2.12
1680 1823 4.956700 ACTAGTACTATGCTGGCTTCTTGA 59.043 41.667 2.33 0.00 0.00 3.02
1682 1825 5.165961 AGTACTATGCTGGCTTCTTGAAA 57.834 39.130 0.00 0.00 0.00 2.69
1683 1826 5.749462 AGTACTATGCTGGCTTCTTGAAAT 58.251 37.500 0.00 0.00 0.00 2.17
1684 1827 5.819901 AGTACTATGCTGGCTTCTTGAAATC 59.180 40.000 0.00 0.00 0.00 2.17
1685 1828 4.853007 ACTATGCTGGCTTCTTGAAATCT 58.147 39.130 0.00 0.00 0.00 2.40
1687 1830 5.819901 ACTATGCTGGCTTCTTGAAATCTAC 59.180 40.000 0.00 0.00 0.00 2.59
1688 1831 4.019792 TGCTGGCTTCTTGAAATCTACA 57.980 40.909 0.00 0.00 0.00 2.74
1689 1832 4.397420 TGCTGGCTTCTTGAAATCTACAA 58.603 39.130 0.00 0.00 0.00 2.41
1690 1833 4.216257 TGCTGGCTTCTTGAAATCTACAAC 59.784 41.667 0.00 0.00 0.00 3.32
1691 1834 4.216257 GCTGGCTTCTTGAAATCTACAACA 59.784 41.667 0.00 0.00 0.00 3.33
1692 1835 5.105997 GCTGGCTTCTTGAAATCTACAACAT 60.106 40.000 0.00 0.00 0.00 2.71
1693 1836 6.094048 GCTGGCTTCTTGAAATCTACAACATA 59.906 38.462 0.00 0.00 0.00 2.29
1694 1837 7.377766 TGGCTTCTTGAAATCTACAACATAC 57.622 36.000 0.00 0.00 0.00 2.39
1695 1838 6.939730 TGGCTTCTTGAAATCTACAACATACA 59.060 34.615 0.00 0.00 0.00 2.29
1696 1839 7.119699 TGGCTTCTTGAAATCTACAACATACAG 59.880 37.037 0.00 0.00 0.00 2.74
1723 1870 7.499321 ACATCAAACTAATGTTACCGTCAAA 57.501 32.000 0.00 0.00 33.62 2.69
1730 1877 3.915437 ATGTTACCGTCAAAAGGCAAG 57.085 42.857 0.00 0.00 0.00 4.01
1741 1888 4.098349 GTCAAAAGGCAAGGCATGATATGA 59.902 41.667 0.00 0.00 0.00 2.15
1746 1893 4.673968 AGGCAAGGCATGATATGATCAAT 58.326 39.130 0.00 0.00 43.50 2.57
1747 1894 4.462834 AGGCAAGGCATGATATGATCAATG 59.537 41.667 0.00 0.00 43.50 2.82
1748 1895 4.381612 GGCAAGGCATGATATGATCAATGG 60.382 45.833 0.00 0.00 43.50 3.16
1749 1896 4.219944 GCAAGGCATGATATGATCAATGGT 59.780 41.667 0.00 0.00 43.50 3.55
1750 1897 5.621555 GCAAGGCATGATATGATCAATGGTC 60.622 44.000 0.00 0.00 43.50 4.02
1751 1898 5.251182 AGGCATGATATGATCAATGGTCA 57.749 39.130 0.00 0.00 43.50 4.02
1752 1899 5.637127 AGGCATGATATGATCAATGGTCAA 58.363 37.500 0.00 0.00 43.50 3.18
1835 1983 4.025040 ACTGCAAAGTTGATCATCAGGA 57.975 40.909 6.55 0.00 0.00 3.86
1873 2021 9.627395 TTCTATCTGAATACGAATAAAGCTAGC 57.373 33.333 6.62 6.62 0.00 3.42
1874 2022 9.015367 TCTATCTGAATACGAATAAAGCTAGCT 57.985 33.333 12.68 12.68 0.00 3.32
1876 2024 8.894768 ATCTGAATACGAATAAAGCTAGCTTT 57.105 30.769 37.26 37.26 46.56 3.51
1905 2053 2.099098 CACTTTTTCTGGCCAAACGTCT 59.901 45.455 7.01 0.00 0.00 4.18
2005 2154 3.006940 TCTCATGGTTTTATTTCGCGCT 58.993 40.909 5.56 0.00 0.00 5.92
2006 2155 3.438781 TCTCATGGTTTTATTTCGCGCTT 59.561 39.130 5.56 0.00 0.00 4.68
2007 2156 3.753842 TCATGGTTTTATTTCGCGCTTC 58.246 40.909 5.56 0.00 0.00 3.86
2008 2157 3.438781 TCATGGTTTTATTTCGCGCTTCT 59.561 39.130 5.56 0.00 0.00 2.85
2009 2158 3.907894 TGGTTTTATTTCGCGCTTCTT 57.092 38.095 5.56 0.00 0.00 2.52
2010 2159 3.560503 TGGTTTTATTTCGCGCTTCTTG 58.439 40.909 5.56 0.00 0.00 3.02
2431 2673 0.322975 AGCACACCAGATCACCAGAC 59.677 55.000 0.00 0.00 0.00 3.51
2552 2794 0.826715 ACGAGCATGATGCCACTACT 59.173 50.000 14.72 0.00 46.52 2.57
2578 2820 0.606604 GGTAGCGAGACAGGGAACAA 59.393 55.000 0.00 0.00 0.00 2.83
2801 3043 8.677148 AGCTGGTACATGTATATACCTTTTTG 57.323 34.615 14.98 3.58 41.36 2.44
2947 3200 7.012894 TCCTGTTTTGTCATTAGTGATTTCGTT 59.987 33.333 0.00 0.00 36.60 3.85
2974 3227 7.174599 GGATCTGAATAATTCTTCTGGACCATG 59.825 40.741 0.00 0.00 0.00 3.66
2987 3240 7.944554 TCTTCTGGACCATGAACTTAGAATTTT 59.055 33.333 0.00 0.00 0.00 1.82
3029 3289 4.886489 CCCCTCTTTTCTCCATGATTTCTC 59.114 45.833 0.00 0.00 0.00 2.87
3030 3290 5.503927 CCCTCTTTTCTCCATGATTTCTCA 58.496 41.667 0.00 0.00 35.41 3.27
3031 3291 5.589452 CCCTCTTTTCTCCATGATTTCTCAG 59.411 44.000 0.00 0.00 34.12 3.35
3032 3292 5.589452 CCTCTTTTCTCCATGATTTCTCAGG 59.411 44.000 0.00 0.00 34.12 3.86
3033 3293 4.946157 TCTTTTCTCCATGATTTCTCAGGC 59.054 41.667 0.00 0.00 34.12 4.85
3069 3331 4.379394 CGTAATGTCCTTGTGATTTGTGGG 60.379 45.833 0.00 0.00 0.00 4.61
3096 3358 7.480760 AATTAGGTGGCATAATGTTGAAACT 57.519 32.000 0.00 0.00 0.00 2.66
3127 3389 2.291741 CTGCACTCAAGTCCTTTCAACC 59.708 50.000 0.00 0.00 0.00 3.77
3141 3403 4.202202 CCTTTCAACCAGTTTATGTGGCAA 60.202 41.667 0.00 0.00 38.83 4.52
3149 3411 4.699735 CCAGTTTATGTGGCAAGTGATGTA 59.300 41.667 0.00 0.00 0.00 2.29
3186 3448 1.200948 GACAACAGCTTTGATGGCCTC 59.799 52.381 3.32 0.00 0.00 4.70
3284 3548 5.746307 TTTCTGCGTAGATATCAGTACGT 57.254 39.130 19.66 0.00 43.17 3.57
3286 3550 6.849588 TTCTGCGTAGATATCAGTACGTTA 57.150 37.500 19.66 11.83 43.17 3.18
3434 3772 4.154015 CGGTCAGTACAATCATTTCAGCAA 59.846 41.667 0.00 0.00 0.00 3.91
3480 3821 9.486123 TGGGATTTTGTGATTCTTATGGAAATA 57.514 29.630 0.00 0.00 37.49 1.40
3576 6178 1.742831 ACTCACACGCACACACAAAAT 59.257 42.857 0.00 0.00 0.00 1.82
3646 6248 4.323417 TCTTGTTACATGCCGACTTGAAT 58.677 39.130 0.00 0.00 0.00 2.57
3648 6250 5.935206 TCTTGTTACATGCCGACTTGAATTA 59.065 36.000 0.00 0.00 0.00 1.40
3722 6324 9.350951 TCGTCTATTAGGAGAGATACAATTTCA 57.649 33.333 0.00 0.00 0.00 2.69
3723 6325 9.400638 CGTCTATTAGGAGAGATACAATTTCAC 57.599 37.037 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.248289 TCCAGAAATTCGTCCCCGAC 59.752 55.000 0.00 0.00 44.13 4.79
10 11 0.978151 TTCCAGAAATTCGTCCCCGA 59.022 50.000 0.00 0.00 42.41 5.14
11 12 2.038387 ATTCCAGAAATTCGTCCCCG 57.962 50.000 0.00 0.00 0.00 5.73
19 20 6.083487 TCCCTCATGAGAATTCCAGAAATT 57.917 37.500 24.62 0.00 40.34 1.82
20 21 5.722172 TCCCTCATGAGAATTCCAGAAAT 57.278 39.130 24.62 0.00 0.00 2.17
21 22 5.443283 CATCCCTCATGAGAATTCCAGAAA 58.557 41.667 24.62 0.00 33.80 2.52
22 23 4.688045 GCATCCCTCATGAGAATTCCAGAA 60.688 45.833 24.62 0.00 33.80 3.02
23 24 3.181447 GCATCCCTCATGAGAATTCCAGA 60.181 47.826 24.62 8.82 33.80 3.86
24 25 3.147629 GCATCCCTCATGAGAATTCCAG 58.852 50.000 24.62 5.13 33.80 3.86
25 26 2.781757 AGCATCCCTCATGAGAATTCCA 59.218 45.455 24.62 0.28 33.80 3.53
26 27 3.505480 AGCATCCCTCATGAGAATTCC 57.495 47.619 24.62 9.10 33.80 3.01
27 28 4.716794 AGAAGCATCCCTCATGAGAATTC 58.283 43.478 24.62 15.91 33.80 2.17
28 29 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
29 30 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
30 31 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
31 32 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
32 33 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
33 34 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
34 35 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
35 36 7.565190 TTGATATAGAAGAAGCATCCCTCAT 57.435 36.000 0.00 0.00 0.00 2.90
36 37 7.565190 ATTGATATAGAAGAAGCATCCCTCA 57.435 36.000 0.00 0.00 0.00 3.86
37 38 9.950496 TTTATTGATATAGAAGAAGCATCCCTC 57.050 33.333 0.00 0.00 0.00 4.30
42 43 9.561069 ACGGTTTTATTGATATAGAAGAAGCAT 57.439 29.630 0.00 0.00 0.00 3.79
43 44 8.826710 CACGGTTTTATTGATATAGAAGAAGCA 58.173 33.333 0.00 0.00 0.00 3.91
44 45 8.283291 CCACGGTTTTATTGATATAGAAGAAGC 58.717 37.037 0.00 0.00 0.00 3.86
45 46 8.774586 CCCACGGTTTTATTGATATAGAAGAAG 58.225 37.037 0.00 0.00 0.00 2.85
46 47 8.269317 ACCCACGGTTTTATTGATATAGAAGAA 58.731 33.333 0.00 0.00 27.29 2.52
47 48 7.713507 CACCCACGGTTTTATTGATATAGAAGA 59.286 37.037 0.00 0.00 31.02 2.87
48 49 7.519970 GCACCCACGGTTTTATTGATATAGAAG 60.520 40.741 0.00 0.00 31.02 2.85
49 50 6.261381 GCACCCACGGTTTTATTGATATAGAA 59.739 38.462 0.00 0.00 31.02 2.10
50 51 5.761234 GCACCCACGGTTTTATTGATATAGA 59.239 40.000 0.00 0.00 31.02 1.98
51 52 5.763204 AGCACCCACGGTTTTATTGATATAG 59.237 40.000 0.00 0.00 31.02 1.31
52 53 5.686753 AGCACCCACGGTTTTATTGATATA 58.313 37.500 0.00 0.00 31.02 0.86
53 54 4.532834 AGCACCCACGGTTTTATTGATAT 58.467 39.130 0.00 0.00 31.02 1.63
54 55 3.958018 AGCACCCACGGTTTTATTGATA 58.042 40.909 0.00 0.00 31.02 2.15
55 56 2.802719 AGCACCCACGGTTTTATTGAT 58.197 42.857 0.00 0.00 31.02 2.57
56 57 2.279935 AGCACCCACGGTTTTATTGA 57.720 45.000 0.00 0.00 31.02 2.57
57 58 3.078837 ACTAGCACCCACGGTTTTATTG 58.921 45.455 0.00 0.00 31.02 1.90
58 59 3.078837 CACTAGCACCCACGGTTTTATT 58.921 45.455 0.00 0.00 31.02 1.40
59 60 2.706890 CACTAGCACCCACGGTTTTAT 58.293 47.619 0.00 0.00 31.02 1.40
60 61 1.878948 GCACTAGCACCCACGGTTTTA 60.879 52.381 0.00 0.00 41.58 1.52
61 62 1.170290 GCACTAGCACCCACGGTTTT 61.170 55.000 0.00 0.00 41.58 2.43
62 63 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
63 64 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
64 65 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
65 66 4.778143 GGGCACTAGCACCCACGG 62.778 72.222 14.48 0.00 46.22 4.94
69 70 2.124151 CCATGGGCACTAGCACCC 60.124 66.667 12.83 12.83 46.13 4.61
70 71 1.153086 CTCCATGGGCACTAGCACC 60.153 63.158 13.02 0.00 46.13 5.01
72 73 0.698238 AAACTCCATGGGCACTAGCA 59.302 50.000 13.02 0.00 44.61 3.49
73 74 1.340017 TGAAACTCCATGGGCACTAGC 60.340 52.381 13.02 0.00 41.10 3.42
74 75 2.787473 TGAAACTCCATGGGCACTAG 57.213 50.000 13.02 3.62 0.00 2.57
75 76 3.737559 AATGAAACTCCATGGGCACTA 57.262 42.857 13.02 0.00 0.00 2.74
76 77 2.610438 AATGAAACTCCATGGGCACT 57.390 45.000 13.02 0.00 0.00 4.40
77 78 3.683365 AAAATGAAACTCCATGGGCAC 57.317 42.857 13.02 0.33 0.00 5.01
96 97 2.432444 CTATGCCCACGTCCTCAAAAA 58.568 47.619 0.00 0.00 0.00 1.94
97 98 1.948611 GCTATGCCCACGTCCTCAAAA 60.949 52.381 0.00 0.00 0.00 2.44
98 99 0.392461 GCTATGCCCACGTCCTCAAA 60.392 55.000 0.00 0.00 0.00 2.69
99 100 1.220749 GCTATGCCCACGTCCTCAA 59.779 57.895 0.00 0.00 0.00 3.02
100 101 2.731571 GGCTATGCCCACGTCCTCA 61.732 63.158 0.00 0.00 44.06 3.86
101 102 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
111 112 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
122 123 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
123 124 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
124 125 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
125 126 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
126 127 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
127 128 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
128 129 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
129 130 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
130 131 3.691498 GTTAGGTTTACAATCATGCGCC 58.309 45.455 4.18 0.00 0.00 6.53
131 132 3.062909 TCGTTAGGTTTACAATCATGCGC 59.937 43.478 0.00 0.00 0.00 6.09
132 133 4.493545 GGTCGTTAGGTTTACAATCATGCG 60.494 45.833 0.00 0.00 0.00 4.73
133 134 4.393680 TGGTCGTTAGGTTTACAATCATGC 59.606 41.667 0.00 0.00 0.00 4.06
134 135 5.872617 TCTGGTCGTTAGGTTTACAATCATG 59.127 40.000 0.00 0.00 0.00 3.07
135 136 6.045072 TCTGGTCGTTAGGTTTACAATCAT 57.955 37.500 0.00 0.00 0.00 2.45
136 137 5.011329 ACTCTGGTCGTTAGGTTTACAATCA 59.989 40.000 0.00 0.00 0.00 2.57
137 138 5.476614 ACTCTGGTCGTTAGGTTTACAATC 58.523 41.667 0.00 0.00 0.00 2.67
138 139 5.479124 ACTCTGGTCGTTAGGTTTACAAT 57.521 39.130 0.00 0.00 0.00 2.71
139 140 4.942761 ACTCTGGTCGTTAGGTTTACAA 57.057 40.909 0.00 0.00 0.00 2.41
140 141 4.557296 CGAACTCTGGTCGTTAGGTTTACA 60.557 45.833 0.00 0.00 0.00 2.41
141 142 3.916776 CGAACTCTGGTCGTTAGGTTTAC 59.083 47.826 0.00 0.00 0.00 2.01
142 143 3.820467 TCGAACTCTGGTCGTTAGGTTTA 59.180 43.478 4.93 0.00 0.00 2.01
143 144 2.624838 TCGAACTCTGGTCGTTAGGTTT 59.375 45.455 4.93 0.00 0.00 3.27
144 145 2.233271 TCGAACTCTGGTCGTTAGGTT 58.767 47.619 4.93 0.00 0.00 3.50
145 146 1.901591 TCGAACTCTGGTCGTTAGGT 58.098 50.000 4.93 0.00 0.00 3.08
146 147 2.223525 GGATCGAACTCTGGTCGTTAGG 60.224 54.545 4.93 0.00 0.00 2.69
147 148 2.422479 TGGATCGAACTCTGGTCGTTAG 59.578 50.000 4.93 0.00 0.00 2.34
148 149 2.163010 GTGGATCGAACTCTGGTCGTTA 59.837 50.000 4.93 0.00 0.00 3.18
149 150 1.067776 GTGGATCGAACTCTGGTCGTT 60.068 52.381 4.93 0.00 0.00 3.85
150 151 0.526662 GTGGATCGAACTCTGGTCGT 59.473 55.000 4.93 0.00 0.00 4.34
151 152 0.523546 CGTGGATCGAACTCTGGTCG 60.524 60.000 0.00 0.00 42.86 4.79
152 153 0.526662 ACGTGGATCGAACTCTGGTC 59.473 55.000 0.00 0.00 42.86 4.02
153 154 0.526662 GACGTGGATCGAACTCTGGT 59.473 55.000 0.00 0.00 42.86 4.00
154 155 0.523546 CGACGTGGATCGAACTCTGG 60.524 60.000 0.00 0.00 45.13 3.86
155 156 0.523546 CCGACGTGGATCGAACTCTG 60.524 60.000 0.00 0.00 45.13 3.35
156 157 1.654954 CCCGACGTGGATCGAACTCT 61.655 60.000 0.00 0.00 45.13 3.24
157 158 1.226603 CCCGACGTGGATCGAACTC 60.227 63.158 0.00 0.00 45.13 3.01
158 159 0.677731 TACCCGACGTGGATCGAACT 60.678 55.000 0.00 0.00 45.13 3.01
159 160 0.524180 GTACCCGACGTGGATCGAAC 60.524 60.000 0.00 0.00 45.13 3.95
160 161 1.802636 GTACCCGACGTGGATCGAA 59.197 57.895 0.00 0.00 45.13 3.71
161 162 2.463620 CGTACCCGACGTGGATCGA 61.464 63.158 0.00 0.00 46.86 3.59
162 163 2.023741 CGTACCCGACGTGGATCG 59.976 66.667 0.00 8.65 46.86 3.69
170 171 2.660189 TCCAGAAATTCGTACCCGAC 57.340 50.000 0.00 0.00 44.13 4.79
171 172 3.899052 ATTCCAGAAATTCGTACCCGA 57.101 42.857 0.00 0.00 42.41 5.14
172 173 4.531659 GAATTCCAGAAATTCGTACCCG 57.468 45.455 0.00 0.00 42.78 5.28
180 181 6.083487 TCCCTCATGAGAATTCCAGAAATT 57.917 37.500 24.62 0.00 40.34 1.82
181 182 5.722172 TCCCTCATGAGAATTCCAGAAAT 57.278 39.130 24.62 0.00 0.00 2.17
182 183 5.443283 CATCCCTCATGAGAATTCCAGAAA 58.557 41.667 24.62 0.00 33.80 2.52
183 184 4.688045 GCATCCCTCATGAGAATTCCAGAA 60.688 45.833 24.62 0.00 33.80 3.02
184 185 3.181447 GCATCCCTCATGAGAATTCCAGA 60.181 47.826 24.62 8.82 33.80 3.86
185 186 3.147629 GCATCCCTCATGAGAATTCCAG 58.852 50.000 24.62 5.13 33.80 3.86
186 187 2.781757 AGCATCCCTCATGAGAATTCCA 59.218 45.455 24.62 0.28 33.80 3.53
187 188 3.505480 AGCATCCCTCATGAGAATTCC 57.495 47.619 24.62 9.10 33.80 3.01
188 189 4.716794 AGAAGCATCCCTCATGAGAATTC 58.283 43.478 24.62 15.91 33.80 2.17
189 190 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
190 191 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
191 192 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
192 193 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
193 194 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
194 195 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
195 196 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
196 197 7.565190 TTGATATAGAAGAAGCATCCCTCAT 57.435 36.000 0.00 0.00 0.00 2.90
197 198 7.565190 ATTGATATAGAAGAAGCATCCCTCA 57.435 36.000 0.00 0.00 0.00 3.86
198 199 9.950496 TTTATTGATATAGAAGAAGCATCCCTC 57.050 33.333 0.00 0.00 0.00 4.30
203 204 9.561069 ACGGTTTTATTGATATAGAAGAAGCAT 57.439 29.630 0.00 0.00 0.00 3.79
204 205 8.826710 CACGGTTTTATTGATATAGAAGAAGCA 58.173 33.333 0.00 0.00 0.00 3.91
205 206 8.283291 CCACGGTTTTATTGATATAGAAGAAGC 58.717 37.037 0.00 0.00 0.00 3.86
206 207 8.774586 CCCACGGTTTTATTGATATAGAAGAAG 58.225 37.037 0.00 0.00 0.00 2.85
207 208 8.269317 ACCCACGGTTTTATTGATATAGAAGAA 58.731 33.333 0.00 0.00 27.29 2.52
208 209 7.713507 CACCCACGGTTTTATTGATATAGAAGA 59.286 37.037 0.00 0.00 31.02 2.87
209 210 7.519970 GCACCCACGGTTTTATTGATATAGAAG 60.520 40.741 0.00 0.00 31.02 2.85
210 211 6.261381 GCACCCACGGTTTTATTGATATAGAA 59.739 38.462 0.00 0.00 31.02 2.10
211 212 5.761234 GCACCCACGGTTTTATTGATATAGA 59.239 40.000 0.00 0.00 31.02 1.98
212 213 5.763204 AGCACCCACGGTTTTATTGATATAG 59.237 40.000 0.00 0.00 31.02 1.31
213 214 5.686753 AGCACCCACGGTTTTATTGATATA 58.313 37.500 0.00 0.00 31.02 0.86
214 215 4.532834 AGCACCCACGGTTTTATTGATAT 58.467 39.130 0.00 0.00 31.02 1.63
215 216 3.958018 AGCACCCACGGTTTTATTGATA 58.042 40.909 0.00 0.00 31.02 2.15
216 217 2.802719 AGCACCCACGGTTTTATTGAT 58.197 42.857 0.00 0.00 31.02 2.57
217 218 2.279935 AGCACCCACGGTTTTATTGA 57.720 45.000 0.00 0.00 31.02 2.57
218 219 3.078837 ACTAGCACCCACGGTTTTATTG 58.921 45.455 0.00 0.00 31.02 1.90
219 220 3.078837 CACTAGCACCCACGGTTTTATT 58.921 45.455 0.00 0.00 31.02 1.40
220 221 2.706890 CACTAGCACCCACGGTTTTAT 58.293 47.619 0.00 0.00 31.02 1.40
221 222 1.878948 GCACTAGCACCCACGGTTTTA 60.879 52.381 0.00 0.00 41.58 1.52
222 223 1.170290 GCACTAGCACCCACGGTTTT 61.170 55.000 0.00 0.00 41.58 2.43
223 224 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
224 225 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
225 226 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
226 227 4.778143 GGGCACTAGCACCCACGG 62.778 72.222 14.48 0.00 46.22 4.94
230 231 2.124151 CCATGGGCACTAGCACCC 60.124 66.667 12.83 12.83 46.13 4.61
231 232 1.153086 CTCCATGGGCACTAGCACC 60.153 63.158 13.02 0.00 46.13 5.01
233 234 0.698238 AAACTCCATGGGCACTAGCA 59.302 50.000 13.02 0.00 44.61 3.49
234 235 1.340017 TGAAACTCCATGGGCACTAGC 60.340 52.381 13.02 0.00 41.10 3.42
235 236 2.787473 TGAAACTCCATGGGCACTAG 57.213 50.000 13.02 3.62 0.00 2.57
236 237 3.737559 AATGAAACTCCATGGGCACTA 57.262 42.857 13.02 0.00 0.00 2.74
237 238 2.610438 AATGAAACTCCATGGGCACT 57.390 45.000 13.02 0.00 0.00 4.40
238 239 3.683365 AAAATGAAACTCCATGGGCAC 57.317 42.857 13.02 0.33 0.00 5.01
256 257 2.432444 CTATGCCCACGTCCTCAAAAA 58.568 47.619 0.00 0.00 0.00 1.94
257 258 1.948611 GCTATGCCCACGTCCTCAAAA 60.949 52.381 0.00 0.00 0.00 2.44
258 259 0.392461 GCTATGCCCACGTCCTCAAA 60.392 55.000 0.00 0.00 0.00 2.69
259 260 1.220749 GCTATGCCCACGTCCTCAA 59.779 57.895 0.00 0.00 0.00 3.02
260 261 2.731571 GGCTATGCCCACGTCCTCA 61.732 63.158 0.00 0.00 44.06 3.86
261 262 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
271 272 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
282 283 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
283 284 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
284 285 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
285 286 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
286 287 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
287 288 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
288 289 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
289 290 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
290 291 3.691498 GTTAGGTTTACAATCATGCGCC 58.309 45.455 4.18 0.00 0.00 6.53
291 292 3.062909 TCGTTAGGTTTACAATCATGCGC 59.937 43.478 0.00 0.00 0.00 6.09
292 293 4.493545 GGTCGTTAGGTTTACAATCATGCG 60.494 45.833 0.00 0.00 0.00 4.73
293 294 4.393680 TGGTCGTTAGGTTTACAATCATGC 59.606 41.667 0.00 0.00 0.00 4.06
294 295 5.872617 TCTGGTCGTTAGGTTTACAATCATG 59.127 40.000 0.00 0.00 0.00 3.07
295 296 6.045072 TCTGGTCGTTAGGTTTACAATCAT 57.955 37.500 0.00 0.00 0.00 2.45
296 297 5.011329 ACTCTGGTCGTTAGGTTTACAATCA 59.989 40.000 0.00 0.00 0.00 2.57
297 298 5.476614 ACTCTGGTCGTTAGGTTTACAATC 58.523 41.667 0.00 0.00 0.00 2.67
298 299 5.479124 ACTCTGGTCGTTAGGTTTACAAT 57.521 39.130 0.00 0.00 0.00 2.71
299 300 4.942761 ACTCTGGTCGTTAGGTTTACAA 57.057 40.909 0.00 0.00 0.00 2.41
300 301 4.557296 CGAACTCTGGTCGTTAGGTTTACA 60.557 45.833 0.00 0.00 0.00 2.41
301 302 3.916776 CGAACTCTGGTCGTTAGGTTTAC 59.083 47.826 0.00 0.00 0.00 2.01
302 303 3.820467 TCGAACTCTGGTCGTTAGGTTTA 59.180 43.478 4.93 0.00 0.00 2.01
303 304 2.624838 TCGAACTCTGGTCGTTAGGTTT 59.375 45.455 4.93 0.00 0.00 3.27
304 305 2.233271 TCGAACTCTGGTCGTTAGGTT 58.767 47.619 4.93 0.00 0.00 3.50
305 306 1.901591 TCGAACTCTGGTCGTTAGGT 58.098 50.000 4.93 0.00 0.00 3.08
306 307 2.223525 GGATCGAACTCTGGTCGTTAGG 60.224 54.545 4.93 0.00 0.00 2.69
307 308 2.422479 TGGATCGAACTCTGGTCGTTAG 59.578 50.000 4.93 0.00 0.00 2.34
308 309 2.163010 GTGGATCGAACTCTGGTCGTTA 59.837 50.000 4.93 0.00 0.00 3.18
309 310 1.067776 GTGGATCGAACTCTGGTCGTT 60.068 52.381 4.93 0.00 0.00 3.85
310 311 0.526662 GTGGATCGAACTCTGGTCGT 59.473 55.000 4.93 0.00 0.00 4.34
311 312 0.523546 CGTGGATCGAACTCTGGTCG 60.524 60.000 0.00 0.00 42.86 4.79
312 313 0.526662 ACGTGGATCGAACTCTGGTC 59.473 55.000 0.00 0.00 42.86 4.02
313 314 0.526662 GACGTGGATCGAACTCTGGT 59.473 55.000 0.00 0.00 42.86 4.00
314 315 0.523546 CGACGTGGATCGAACTCTGG 60.524 60.000 0.00 0.00 45.13 3.86
315 316 0.523546 CCGACGTGGATCGAACTCTG 60.524 60.000 0.00 0.00 45.13 3.35
316 317 1.654954 CCCGACGTGGATCGAACTCT 61.655 60.000 0.00 0.00 45.13 3.24
317 318 1.226603 CCCGACGTGGATCGAACTC 60.227 63.158 0.00 0.00 45.13 3.01
318 319 2.707849 CCCCGACGTGGATCGAACT 61.708 63.158 0.00 0.00 45.13 3.01
319 320 2.202703 CCCCGACGTGGATCGAAC 60.203 66.667 0.00 0.00 45.13 3.95
320 321 2.361483 TCCCCGACGTGGATCGAA 60.361 61.111 0.00 0.00 45.13 3.71
321 322 3.136123 GTCCCCGACGTGGATCGA 61.136 66.667 1.39 0.00 45.13 3.59
330 331 0.248289 TCCAGAAATTCGTCCCCGAC 59.752 55.000 0.00 0.00 44.13 4.79
331 332 0.978151 TTCCAGAAATTCGTCCCCGA 59.022 50.000 0.00 0.00 42.41 5.14
332 333 2.038387 ATTCCAGAAATTCGTCCCCG 57.962 50.000 0.00 0.00 0.00 5.73
340 341 6.083487 TCCCTCATGAGAATTCCAGAAATT 57.917 37.500 24.62 0.00 40.34 1.82
341 342 5.722172 TCCCTCATGAGAATTCCAGAAAT 57.278 39.130 24.62 0.00 0.00 2.17
342 343 5.443283 CATCCCTCATGAGAATTCCAGAAA 58.557 41.667 24.62 0.00 33.80 2.52
343 344 4.688045 GCATCCCTCATGAGAATTCCAGAA 60.688 45.833 24.62 0.00 33.80 3.02
344 345 3.181447 GCATCCCTCATGAGAATTCCAGA 60.181 47.826 24.62 8.82 33.80 3.86
345 346 3.147629 GCATCCCTCATGAGAATTCCAG 58.852 50.000 24.62 5.13 33.80 3.86
346 347 2.781757 AGCATCCCTCATGAGAATTCCA 59.218 45.455 24.62 0.28 33.80 3.53
347 348 3.505480 AGCATCCCTCATGAGAATTCC 57.495 47.619 24.62 9.10 33.80 3.01
348 349 4.716794 AGAAGCATCCCTCATGAGAATTC 58.283 43.478 24.62 15.91 33.80 2.17
349 350 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
350 351 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
351 352 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
352 353 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
353 354 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
354 355 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
355 356 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
356 357 7.565190 TTGATATAGAAGAAGCATCCCTCAT 57.435 36.000 0.00 0.00 0.00 2.90
357 358 7.565190 ATTGATATAGAAGAAGCATCCCTCA 57.435 36.000 0.00 0.00 0.00 3.86
358 359 9.950496 TTTATTGATATAGAAGAAGCATCCCTC 57.050 33.333 0.00 0.00 0.00 4.30
363 364 9.561069 ACGGTTTTATTGATATAGAAGAAGCAT 57.439 29.630 0.00 0.00 0.00 3.79
364 365 8.826710 CACGGTTTTATTGATATAGAAGAAGCA 58.173 33.333 0.00 0.00 0.00 3.91
365 366 8.283291 CCACGGTTTTATTGATATAGAAGAAGC 58.717 37.037 0.00 0.00 0.00 3.86
366 367 8.774586 CCCACGGTTTTATTGATATAGAAGAAG 58.225 37.037 0.00 0.00 0.00 2.85
367 368 8.269317 ACCCACGGTTTTATTGATATAGAAGAA 58.731 33.333 0.00 0.00 27.29 2.52
368 369 7.713507 CACCCACGGTTTTATTGATATAGAAGA 59.286 37.037 0.00 0.00 31.02 2.87
369 370 7.519970 GCACCCACGGTTTTATTGATATAGAAG 60.520 40.741 0.00 0.00 31.02 2.85
370 371 6.261381 GCACCCACGGTTTTATTGATATAGAA 59.739 38.462 0.00 0.00 31.02 2.10
371 372 5.761234 GCACCCACGGTTTTATTGATATAGA 59.239 40.000 0.00 0.00 31.02 1.98
372 373 5.763204 AGCACCCACGGTTTTATTGATATAG 59.237 40.000 0.00 0.00 31.02 1.31
373 374 5.686753 AGCACCCACGGTTTTATTGATATA 58.313 37.500 0.00 0.00 31.02 0.86
374 375 4.532834 AGCACCCACGGTTTTATTGATAT 58.467 39.130 0.00 0.00 31.02 1.63
375 376 3.958018 AGCACCCACGGTTTTATTGATA 58.042 40.909 0.00 0.00 31.02 2.15
376 377 2.802719 AGCACCCACGGTTTTATTGAT 58.197 42.857 0.00 0.00 31.02 2.57
377 378 2.279935 AGCACCCACGGTTTTATTGA 57.720 45.000 0.00 0.00 31.02 2.57
378 379 3.078837 ACTAGCACCCACGGTTTTATTG 58.921 45.455 0.00 0.00 31.02 1.90
379 380 3.078837 CACTAGCACCCACGGTTTTATT 58.921 45.455 0.00 0.00 31.02 1.40
380 381 2.706890 CACTAGCACCCACGGTTTTAT 58.293 47.619 0.00 0.00 31.02 1.40
381 382 1.878948 GCACTAGCACCCACGGTTTTA 60.879 52.381 0.00 0.00 41.58 1.52
382 383 1.170290 GCACTAGCACCCACGGTTTT 61.170 55.000 0.00 0.00 41.58 2.43
383 384 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
384 385 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
385 386 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
386 387 4.778143 GGGCACTAGCACCCACGG 62.778 72.222 14.48 0.00 46.22 4.94
390 391 2.124151 CCATGGGCACTAGCACCC 60.124 66.667 12.83 12.83 46.13 4.61
391 392 1.153086 CTCCATGGGCACTAGCACC 60.153 63.158 13.02 0.00 46.13 5.01
393 394 0.698238 AAACTCCATGGGCACTAGCA 59.302 50.000 13.02 0.00 44.61 3.49
394 395 1.340017 TGAAACTCCATGGGCACTAGC 60.340 52.381 13.02 0.00 41.10 3.42
395 396 2.787473 TGAAACTCCATGGGCACTAG 57.213 50.000 13.02 3.62 0.00 2.57
396 397 3.737559 AATGAAACTCCATGGGCACTA 57.262 42.857 13.02 0.00 0.00 2.74
397 398 2.610438 AATGAAACTCCATGGGCACT 57.390 45.000 13.02 0.00 0.00 4.40
398 399 3.683365 AAAATGAAACTCCATGGGCAC 57.317 42.857 13.02 0.33 0.00 5.01
420 421 6.151480 GGTCGACCCTGTCCAATTATTAAAAA 59.849 38.462 24.75 0.00 0.00 1.94
421 422 5.648960 GGTCGACCCTGTCCAATTATTAAAA 59.351 40.000 24.75 0.00 0.00 1.52
422 423 5.187687 GGTCGACCCTGTCCAATTATTAAA 58.812 41.667 24.75 0.00 0.00 1.52
423 424 4.225492 TGGTCGACCCTGTCCAATTATTAA 59.775 41.667 31.19 3.97 34.29 1.40
424 425 3.775866 TGGTCGACCCTGTCCAATTATTA 59.224 43.478 31.19 4.68 34.29 0.98
425 426 2.574369 TGGTCGACCCTGTCCAATTATT 59.426 45.455 31.19 0.00 34.29 1.40
426 427 2.093128 GTGGTCGACCCTGTCCAATTAT 60.093 50.000 31.19 0.00 34.29 1.28
427 428 1.276989 GTGGTCGACCCTGTCCAATTA 59.723 52.381 31.19 5.95 34.29 1.40
428 429 0.036306 GTGGTCGACCCTGTCCAATT 59.964 55.000 31.19 0.00 34.29 2.32
429 430 1.677552 GTGGTCGACCCTGTCCAAT 59.322 57.895 31.19 0.00 34.29 3.16
430 431 2.513259 GGTGGTCGACCCTGTCCAA 61.513 63.158 31.19 8.39 39.10 3.53
431 432 2.920912 GGTGGTCGACCCTGTCCA 60.921 66.667 31.19 9.27 39.10 4.02
432 433 0.974010 TATGGTGGTCGACCCTGTCC 60.974 60.000 31.19 24.93 45.45 4.02
433 434 0.460311 CTATGGTGGTCGACCCTGTC 59.540 60.000 31.19 17.78 45.45 3.51
434 435 0.252103 ACTATGGTGGTCGACCCTGT 60.252 55.000 31.19 16.64 45.45 4.00
435 436 1.681793 CTACTATGGTGGTCGACCCTG 59.318 57.143 31.19 16.09 45.45 4.45
436 437 1.287146 ACTACTATGGTGGTCGACCCT 59.713 52.381 31.19 15.52 45.45 4.34
437 438 1.772836 ACTACTATGGTGGTCGACCC 58.227 55.000 31.19 21.32 45.45 4.46
438 439 5.287226 CAAATACTACTATGGTGGTCGACC 58.713 45.833 28.17 28.17 46.37 4.79
439 440 5.163478 ACCAAATACTACTATGGTGGTCGAC 60.163 44.000 7.13 7.13 44.25 4.20
440 441 4.957954 ACCAAATACTACTATGGTGGTCGA 59.042 41.667 0.35 0.00 44.25 4.20
441 442 5.272283 ACCAAATACTACTATGGTGGTCG 57.728 43.478 0.35 0.00 44.25 4.79
444 445 7.871463 GCTAACTACCAAATACTACTATGGTGG 59.129 40.741 6.56 6.12 45.43 4.61
445 446 7.594015 CGCTAACTACCAAATACTACTATGGTG 59.406 40.741 6.56 0.32 45.43 4.17
447 448 6.585322 GCGCTAACTACCAAATACTACTATGG 59.415 42.308 0.00 0.00 38.91 2.74
448 449 7.368833 AGCGCTAACTACCAAATACTACTATG 58.631 38.462 8.99 0.00 0.00 2.23
449 450 7.309073 GGAGCGCTAACTACCAAATACTACTAT 60.309 40.741 11.50 0.00 0.00 2.12
450 451 6.016777 GGAGCGCTAACTACCAAATACTACTA 60.017 42.308 11.50 0.00 0.00 1.82
451 452 5.221204 GGAGCGCTAACTACCAAATACTACT 60.221 44.000 11.50 0.00 0.00 2.57
452 453 4.981054 GGAGCGCTAACTACCAAATACTAC 59.019 45.833 11.50 0.00 0.00 2.73
453 454 4.891756 AGGAGCGCTAACTACCAAATACTA 59.108 41.667 11.50 0.00 0.00 1.82
454 455 3.705072 AGGAGCGCTAACTACCAAATACT 59.295 43.478 11.50 0.00 0.00 2.12
455 456 4.049869 GAGGAGCGCTAACTACCAAATAC 58.950 47.826 11.50 0.00 0.00 1.89
456 457 3.069158 GGAGGAGCGCTAACTACCAAATA 59.931 47.826 11.50 0.00 0.00 1.40
470 471 2.826777 AATGCCAGTTGGGAGGAGCG 62.827 60.000 0.00 0.00 39.50 5.03
528 529 8.966868 GGAAGGATTTGAACAGGTATTATTTGA 58.033 33.333 0.00 0.00 0.00 2.69
529 530 8.971073 AGGAAGGATTTGAACAGGTATTATTTG 58.029 33.333 0.00 0.00 0.00 2.32
531 532 8.971073 CAAGGAAGGATTTGAACAGGTATTATT 58.029 33.333 0.00 0.00 0.00 1.40
532 533 7.561356 CCAAGGAAGGATTTGAACAGGTATTAT 59.439 37.037 0.00 0.00 0.00 1.28
533 534 6.889722 CCAAGGAAGGATTTGAACAGGTATTA 59.110 38.462 0.00 0.00 0.00 0.98
610 611 1.102222 CCCTTCCCTCCGAGAGTACG 61.102 65.000 0.00 0.00 0.00 3.67
633 634 4.132441 AATGGCATTGGCGTGGCG 62.132 61.111 12.82 0.00 46.68 5.69
634 635 2.509786 CAATGGCATTGGCGTGGC 60.510 61.111 28.45 8.94 44.24 5.01
652 653 1.168407 CGTGGTGGGATGATGGATGC 61.168 60.000 0.00 0.00 0.00 3.91
721 726 1.206610 GGAAGGAAGGGAAGTCGGTAC 59.793 57.143 0.00 0.00 0.00 3.34
722 727 1.078324 AGGAAGGAAGGGAAGTCGGTA 59.922 52.381 0.00 0.00 0.00 4.02
723 728 0.178900 AGGAAGGAAGGGAAGTCGGT 60.179 55.000 0.00 0.00 0.00 4.69
724 729 0.537653 GAGGAAGGAAGGGAAGTCGG 59.462 60.000 0.00 0.00 0.00 4.79
725 730 0.537653 GGAGGAAGGAAGGGAAGTCG 59.462 60.000 0.00 0.00 0.00 4.18
726 731 1.834896 GAGGAGGAAGGAAGGGAAGTC 59.165 57.143 0.00 0.00 0.00 3.01
727 732 1.897647 CGAGGAGGAAGGAAGGGAAGT 60.898 57.143 0.00 0.00 0.00 3.01
728 733 0.827368 CGAGGAGGAAGGAAGGGAAG 59.173 60.000 0.00 0.00 0.00 3.46
777 782 4.657824 ACGCGTTGTCCTGTCCCG 62.658 66.667 5.58 0.00 0.00 5.14
937 942 1.539124 ACAACACCCCCTCCTCTCC 60.539 63.158 0.00 0.00 0.00 3.71
939 944 2.529744 GCACAACACCCCCTCCTCT 61.530 63.158 0.00 0.00 0.00 3.69
1100 1119 0.464916 TGGGCTAGCGACGATACTGA 60.465 55.000 9.00 0.00 0.00 3.41
1101 1120 0.039978 CTGGGCTAGCGACGATACTG 60.040 60.000 9.00 0.00 0.00 2.74
1102 1121 0.179026 TCTGGGCTAGCGACGATACT 60.179 55.000 9.00 0.00 0.00 2.12
1103 1122 0.882474 ATCTGGGCTAGCGACGATAC 59.118 55.000 9.00 0.00 0.00 2.24
1104 1123 1.166129 GATCTGGGCTAGCGACGATA 58.834 55.000 9.00 0.00 0.00 2.92
1105 1124 1.857318 CGATCTGGGCTAGCGACGAT 61.857 60.000 9.00 9.60 0.00 3.73
1197 1216 2.178912 TCAATCTTTGTGGTCGGTCC 57.821 50.000 0.00 0.00 0.00 4.46
1198 1217 3.181520 CGAATCAATCTTTGTGGTCGGTC 60.182 47.826 0.00 0.00 0.00 4.79
1199 1218 2.742053 CGAATCAATCTTTGTGGTCGGT 59.258 45.455 0.00 0.00 0.00 4.69
1200 1219 3.000041 TCGAATCAATCTTTGTGGTCGG 59.000 45.455 0.00 0.00 33.48 4.79
1202 1221 6.182039 TGAATCGAATCAATCTTTGTGGTC 57.818 37.500 0.00 0.00 0.00 4.02
1203 1222 6.573664 TTGAATCGAATCAATCTTTGTGGT 57.426 33.333 11.85 0.00 34.50 4.16
1205 1224 8.906636 ATCTTTGAATCGAATCAATCTTTGTG 57.093 30.769 16.28 2.82 38.98 3.33
1206 1225 9.350357 CAATCTTTGAATCGAATCAATCTTTGT 57.650 29.630 16.28 0.00 38.98 2.83
1210 1229 9.947669 GAATCAATCTTTGAATCGAATCAATCT 57.052 29.630 16.28 2.38 43.95 2.40
1211 1230 9.947669 AGAATCAATCTTTGAATCGAATCAATC 57.052 29.630 16.28 8.55 42.88 2.67
1227 1263 6.558488 AGCACTAGGAAGAAGAATCAATCT 57.442 37.500 0.00 0.00 41.32 2.40
1265 1301 6.126883 TGGTCGGTCCAAGATTGATTAGTTAT 60.127 38.462 0.00 0.00 44.12 1.89
1266 1302 5.188163 TGGTCGGTCCAAGATTGATTAGTTA 59.812 40.000 0.00 0.00 44.12 2.24
1297 1335 0.328258 AAGCAGCCGTCCCACTAAAT 59.672 50.000 0.00 0.00 0.00 1.40
1314 1352 5.411669 ACTTAGTTAATTTCGTGGGAGCAAG 59.588 40.000 0.00 0.00 0.00 4.01
1350 1388 1.158007 AACCCAACCAATCCCTGAGT 58.842 50.000 0.00 0.00 0.00 3.41
1459 1497 6.823286 TGAATAAATCTGATGGGAGGTACA 57.177 37.500 0.00 0.00 0.00 2.90
1587 1627 0.179108 GGACTCATCCGTCCGAAAGG 60.179 60.000 0.00 0.00 43.56 3.11
1600 1640 2.587247 GGCAGCAGGACAGGACTCA 61.587 63.158 0.00 0.00 0.00 3.41
1661 1701 5.819901 AGATTTCAAGAAGCCAGCATAGTAC 59.180 40.000 0.00 0.00 0.00 2.73
1662 1702 5.994250 AGATTTCAAGAAGCCAGCATAGTA 58.006 37.500 0.00 0.00 0.00 1.82
1663 1703 4.853007 AGATTTCAAGAAGCCAGCATAGT 58.147 39.130 0.00 0.00 0.00 2.12
1664 1704 5.819379 TGTAGATTTCAAGAAGCCAGCATAG 59.181 40.000 0.00 0.00 0.00 2.23
1665 1705 5.744171 TGTAGATTTCAAGAAGCCAGCATA 58.256 37.500 0.00 0.00 0.00 3.14
1666 1706 4.592942 TGTAGATTTCAAGAAGCCAGCAT 58.407 39.130 0.00 0.00 0.00 3.79
1667 1707 4.019792 TGTAGATTTCAAGAAGCCAGCA 57.980 40.909 0.00 0.00 0.00 4.41
1682 1825 9.944376 AGTTTGATGTTACTGTATGTTGTAGAT 57.056 29.630 0.00 0.00 0.00 1.98
1709 1852 3.005367 CCTTGCCTTTTGACGGTAACATT 59.995 43.478 0.00 0.00 0.00 2.71
1717 1860 0.597568 TCATGCCTTGCCTTTTGACG 59.402 50.000 0.00 0.00 0.00 4.35
1718 1861 4.098349 TCATATCATGCCTTGCCTTTTGAC 59.902 41.667 0.00 0.00 0.00 3.18
1723 1870 4.108501 TGATCATATCATGCCTTGCCTT 57.891 40.909 0.00 0.00 33.59 4.35
1730 1877 5.970317 TTGACCATTGATCATATCATGCC 57.030 39.130 0.00 0.00 39.39 4.40
1741 1888 7.555087 TGTTGAAACTTTCTTTGACCATTGAT 58.445 30.769 3.22 0.00 0.00 2.57
1746 1893 5.013547 TCCTGTTGAAACTTTCTTTGACCA 58.986 37.500 3.22 0.00 0.00 4.02
1747 1894 5.576447 TCCTGTTGAAACTTTCTTTGACC 57.424 39.130 3.22 0.00 0.00 4.02
1748 1895 6.621613 ACTTCCTGTTGAAACTTTCTTTGAC 58.378 36.000 3.22 0.00 31.06 3.18
1749 1896 6.432783 TGACTTCCTGTTGAAACTTTCTTTGA 59.567 34.615 3.22 0.00 31.06 2.69
1750 1897 6.620678 TGACTTCCTGTTGAAACTTTCTTTG 58.379 36.000 3.22 0.00 31.06 2.77
1751 1898 6.834168 TGACTTCCTGTTGAAACTTTCTTT 57.166 33.333 3.22 0.00 31.06 2.52
1752 1899 6.834168 TTGACTTCCTGTTGAAACTTTCTT 57.166 33.333 3.22 0.00 31.06 2.52
1873 2021 4.044426 CCAGAAAAAGTGAAAGGCGAAAG 58.956 43.478 0.00 0.00 0.00 2.62
1874 2022 3.736740 GCCAGAAAAAGTGAAAGGCGAAA 60.737 43.478 0.00 0.00 0.00 3.46
1876 2024 1.336755 GCCAGAAAAAGTGAAAGGCGA 59.663 47.619 0.00 0.00 0.00 5.54
1931 2079 8.948631 ACACTGATCGATGATATTTAACAAGT 57.051 30.769 0.54 0.00 0.00 3.16
1988 2137 4.165779 CAAGAAGCGCGAAATAAAACCAT 58.834 39.130 12.10 0.00 0.00 3.55
2005 2154 3.507162 TGAGGCATGGAAGAACAAGAA 57.493 42.857 0.00 0.00 0.00 2.52
2006 2155 3.614092 GATGAGGCATGGAAGAACAAGA 58.386 45.455 0.00 0.00 0.00 3.02
2007 2156 2.353889 CGATGAGGCATGGAAGAACAAG 59.646 50.000 0.00 0.00 0.00 3.16
2008 2157 2.290260 ACGATGAGGCATGGAAGAACAA 60.290 45.455 0.00 0.00 0.00 2.83
2009 2158 1.278985 ACGATGAGGCATGGAAGAACA 59.721 47.619 0.00 0.00 0.00 3.18
2010 2159 2.029838 ACGATGAGGCATGGAAGAAC 57.970 50.000 0.00 0.00 0.00 3.01
2083 2321 4.853007 ACTAGAGCAAAGGAGCATTTCAT 58.147 39.130 0.00 0.00 36.85 2.57
2137 2375 9.620259 GGACTGAAAATATTATCTTCTCCAGTT 57.380 33.333 0.00 0.00 32.15 3.16
2431 2673 1.458220 CGCTGCGAATGATGTTTGCG 61.458 55.000 18.66 0.00 36.41 4.85
2552 2794 2.004808 CTGTCTCGCTACCGGCATCA 62.005 60.000 0.00 0.00 41.91 3.07
2685 2927 0.321653 TTCTTCTTCTTCCGGCAGCC 60.322 55.000 0.00 0.00 0.00 4.85
2779 3021 7.291566 CCCCAAAAAGGTATATACATGTACCA 58.708 38.462 16.10 5.08 44.26 3.25
2947 3200 6.158520 TGGTCCAGAAGAATTATTCAGATCCA 59.841 38.462 14.83 13.74 0.00 3.41
2974 3227 8.648557 AACCTTGCTTGAAAAATTCTAAGTTC 57.351 30.769 0.00 0.00 0.00 3.01
2987 3240 3.161866 GGGTCCATAAACCTTGCTTGAA 58.838 45.455 0.00 0.00 39.42 2.69
3032 3292 2.536997 ATTACGTGACCTGGCCTGGC 62.537 60.000 27.51 19.76 0.00 4.85
3033 3293 0.744414 CATTACGTGACCTGGCCTGG 60.744 60.000 26.14 26.14 0.00 4.45
3069 3331 6.633500 TCAACATTATGCCACCTAATTAGC 57.367 37.500 6.99 0.00 0.00 3.09
3096 3358 1.347707 CTTGAGTGCAGTCCCCAGTTA 59.652 52.381 18.82 0.00 0.00 2.24
3127 3389 4.771590 ACATCACTTGCCACATAAACTG 57.228 40.909 0.00 0.00 0.00 3.16
3141 3403 9.778741 TCAAAACTTTAGAGAACATACATCACT 57.221 29.630 0.00 0.00 0.00 3.41
3149 3411 7.067494 AGCTGTTGTCAAAACTTTAGAGAACAT 59.933 33.333 0.00 0.00 42.27 2.71
3186 3448 7.529519 CGTAATTCTAGTTTGTTTGAAAGGTCG 59.470 37.037 0.00 0.00 0.00 4.79
3220 3482 4.498009 CCGCTGGAACTATAATGCAAAAGG 60.498 45.833 0.00 0.00 0.00 3.11
3359 3695 7.114953 GTGCTTCTGCCTGATTAAAACTTAAAC 59.885 37.037 0.00 0.00 38.71 2.01
3408 3746 5.147330 TGAAATGATTGTACTGACCGTCT 57.853 39.130 0.00 0.00 0.00 4.18
3434 3772 2.145397 TGATGGAGCGGTACTCTCTT 57.855 50.000 0.00 4.49 45.48 2.85
3480 3821 4.369872 AGAGAGGAGTGGGATTTTCAGAT 58.630 43.478 0.00 0.00 0.00 2.90
3541 6139 4.338118 CGTGTGAGTTAAATATGGCCCATT 59.662 41.667 0.00 0.00 0.00 3.16
3576 6178 6.830912 CCATCTTGAGTGGGAGTATTGAATA 58.169 40.000 0.00 0.00 32.98 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.