Multiple sequence alignment - TraesCS2A01G280400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G280400 chr2A 100.000 4425 0 0 1 4425 468493975 468498399 0.000 8172.0
1 TraesCS2A01G280400 chr2B 94.138 2934 114 26 1533 4425 416872032 416874948 0.000 4412.0
2 TraesCS2A01G280400 chr2B 94.638 1548 45 10 1 1531 416870440 416871966 0.000 2364.0
3 TraesCS2A01G280400 chr2D 93.297 2939 107 24 1531 4425 350794067 350796959 0.000 4253.0
4 TraesCS2A01G280400 chr2D 96.057 837 21 2 707 1531 350793166 350794002 0.000 1352.0
5 TraesCS2A01G280400 chr2D 96.455 677 23 1 1 677 350792058 350792733 0.000 1116.0
6 TraesCS2A01G280400 chr7B 100.000 29 0 0 701 729 532174709 532174737 0.002 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G280400 chr2A 468493975 468498399 4424 False 8172.000000 8172 100.000000 1 4425 1 chr2A.!!$F1 4424
1 TraesCS2A01G280400 chr2B 416870440 416874948 4508 False 3388.000000 4412 94.388000 1 4425 2 chr2B.!!$F1 4424
2 TraesCS2A01G280400 chr2D 350792058 350796959 4901 False 2240.333333 4253 95.269667 1 4425 3 chr2D.!!$F1 4424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 674 0.178944 TCTCTCAAGAACCGTGGGGA 60.179 55.0 0.00 0.0 36.97 4.81 F
1090 1517 0.106419 TTGTTGGTGTCTTGGTCCCC 60.106 55.0 0.00 0.0 0.00 4.81 F
1839 2345 0.106918 AGGGTGCACGGAAGAACAAA 60.107 50.0 11.45 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 2103 0.788391 CAGAACGTTCCAACTACGCC 59.212 55.000 24.22 0.0 42.49 5.68 R
2659 3169 3.118371 AGGCTACCAATTCCCTTACGAAG 60.118 47.826 0.00 0.0 0.00 3.79 R
3814 4386 1.535028 CAACCGTTATGAAGCACAGCA 59.465 47.619 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 320 0.186386 TTTGTGGGGATTTCGGGTGT 59.814 50.000 0.00 0.00 0.00 4.16
317 322 0.538516 TGTGGGGATTTCGGGTGTTG 60.539 55.000 0.00 0.00 0.00 3.33
344 349 9.712305 CGAGAGGATTAATTAGTGGATTTGTAT 57.288 33.333 0.00 0.00 0.00 2.29
354 359 9.927081 AATTAGTGGATTTGTATTCTTGGAGAT 57.073 29.630 0.00 0.00 0.00 2.75
356 361 9.832445 TTAGTGGATTTGTATTCTTGGAGATAC 57.168 33.333 0.00 0.00 0.00 2.24
357 362 7.861629 AGTGGATTTGTATTCTTGGAGATACA 58.138 34.615 0.00 0.00 0.00 2.29
358 363 8.328758 AGTGGATTTGTATTCTTGGAGATACAA 58.671 33.333 5.17 5.17 37.61 2.41
458 479 3.054802 CCTGAGGAGCTGGTATTGTTCTT 60.055 47.826 0.00 0.00 0.00 2.52
572 593 3.120786 GGTCGTTAGGTTCGTTGATGTTG 60.121 47.826 0.00 0.00 0.00 3.33
588 609 3.594603 TGTTGGCTCAGTTCTACTAGC 57.405 47.619 0.00 0.00 0.00 3.42
653 674 0.178944 TCTCTCAAGAACCGTGGGGA 60.179 55.000 0.00 0.00 36.97 4.81
684 706 3.191371 CCCCCTCGTTTCTTGATTTCTTG 59.809 47.826 0.00 0.00 0.00 3.02
685 707 3.821033 CCCCTCGTTTCTTGATTTCTTGT 59.179 43.478 0.00 0.00 0.00 3.16
703 726 1.272425 TGTGGGGGATTCGATTTGCTT 60.272 47.619 0.00 0.00 0.00 3.91
704 727 1.134946 GTGGGGGATTCGATTTGCTTG 59.865 52.381 0.00 0.00 0.00 4.01
705 728 1.272425 TGGGGGATTCGATTTGCTTGT 60.272 47.619 0.00 0.00 0.00 3.16
742 1167 6.032717 GCTGCCTTCAGTCATTCTTATTTTC 58.967 40.000 0.00 0.00 42.29 2.29
861 1288 2.766828 GGGGATATCTATTGGTCCTCCG 59.233 54.545 2.05 0.00 36.30 4.63
976 1403 4.582973 AGAATTTGAGAGAAAGGAGGGG 57.417 45.455 0.00 0.00 0.00 4.79
1090 1517 0.106419 TTGTTGGTGTCTTGGTCCCC 60.106 55.000 0.00 0.00 0.00 4.81
1100 1527 4.741239 TGGTCCCCTGGGCTCCTC 62.741 72.222 19.93 4.92 34.68 3.71
1147 1574 2.038557 ACGGAGGGCATATGTGTTATCC 59.961 50.000 4.29 4.84 0.00 2.59
1152 1579 4.473444 AGGGCATATGTGTTATCCCTTTG 58.527 43.478 9.81 0.00 35.85 2.77
1457 1895 5.603170 ATTGCCAACTAGCTTATGCAAAT 57.397 34.783 11.17 1.50 41.44 2.32
1531 1969 8.429493 TTTTGTATGAGCATCTATCAGTTGAG 57.571 34.615 0.00 0.00 34.92 3.02
1532 1970 6.094193 TGTATGAGCATCTATCAGTTGAGG 57.906 41.667 0.00 0.00 34.92 3.86
1608 2113 2.199236 GTAAATCCTCGGCGTAGTTGG 58.801 52.381 6.85 3.14 0.00 3.77
1626 2131 5.821204 AGTTGGAACGTTCTGAAAGATTTG 58.179 37.500 26.32 0.00 46.36 2.32
1645 2151 8.086851 AGATTTGTTTGTATTTGTCAAATGGC 57.913 30.769 19.10 12.57 38.34 4.40
1650 2156 5.859521 TTGTATTTGTCAAATGGCAATGC 57.140 34.783 19.10 0.00 39.61 3.56
1668 2174 3.281727 TGCCTGATAACCAGTGGATTC 57.718 47.619 18.40 9.79 41.33 2.52
1727 2233 9.551734 TCCTGAAAATGATGTCAAGATGTATAG 57.448 33.333 0.00 0.00 0.00 1.31
1824 2330 0.763223 ACACCCAGAAGTTCGAGGGT 60.763 55.000 26.96 26.96 46.09 4.34
1839 2345 0.106918 AGGGTGCACGGAAGAACAAA 60.107 50.000 11.45 0.00 0.00 2.83
1866 2372 2.817844 AGGCGTTTACTCCAATCCAAAC 59.182 45.455 0.00 0.00 0.00 2.93
1953 2459 3.003173 CCCCGAGAACAGGCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
2309 2815 3.576982 GGTCCGGGAATATATGTGTCTGA 59.423 47.826 0.00 0.00 0.00 3.27
2321 2827 8.899427 ATATATGTGTCTGAACTTTGGAGATG 57.101 34.615 0.00 0.00 0.00 2.90
2680 3190 2.994186 TCGTAAGGGAATTGGTAGCC 57.006 50.000 0.00 0.00 38.47 3.93
2688 3201 5.568620 AGGGAATTGGTAGCCTTACTATG 57.431 43.478 0.00 0.00 32.15 2.23
2691 3204 7.023120 AGGGAATTGGTAGCCTTACTATGATA 58.977 38.462 0.00 0.00 32.15 2.15
2726 3263 6.151144 GCAATTTGGTAATAGAGTTCTGTGGT 59.849 38.462 0.00 0.00 0.00 4.16
2916 3453 6.849085 AACAATGGGTACTTCATGCATAAA 57.151 33.333 0.00 0.00 0.00 1.40
2934 3471 8.455598 TGCATAAATATTGCAATGATGATTCG 57.544 30.769 22.27 7.12 46.48 3.34
2946 3483 6.634436 GCAATGATGATTCGTAATGACCTTTC 59.366 38.462 0.00 0.00 0.00 2.62
2964 3501 5.597182 ACCTTTCAATCCACTATACGCTAGA 59.403 40.000 0.00 0.00 0.00 2.43
3203 3768 6.012745 GGCCTTATGGGTGATCTCAATAATT 58.987 40.000 0.00 0.00 37.43 1.40
3204 3769 6.494835 GGCCTTATGGGTGATCTCAATAATTT 59.505 38.462 0.00 0.00 37.43 1.82
3205 3770 7.373493 GCCTTATGGGTGATCTCAATAATTTG 58.627 38.462 0.00 0.00 37.43 2.32
3206 3771 7.524367 GCCTTATGGGTGATCTCAATAATTTGG 60.524 40.741 0.00 0.00 37.43 3.28
3207 3772 7.725397 CCTTATGGGTGATCTCAATAATTTGGA 59.275 37.037 0.00 0.00 33.44 3.53
3208 3773 8.696043 TTATGGGTGATCTCAATAATTTGGAG 57.304 34.615 0.00 0.00 33.44 3.86
3209 3774 6.078456 TGGGTGATCTCAATAATTTGGAGT 57.922 37.500 0.00 0.00 33.44 3.85
3210 3775 6.493166 TGGGTGATCTCAATAATTTGGAGTT 58.507 36.000 0.00 0.00 33.44 3.01
3211 3776 6.953520 TGGGTGATCTCAATAATTTGGAGTTT 59.046 34.615 0.00 0.00 33.44 2.66
3212 3777 8.112822 TGGGTGATCTCAATAATTTGGAGTTTA 58.887 33.333 0.00 0.00 33.44 2.01
3213 3778 8.966868 GGGTGATCTCAATAATTTGGAGTTTAA 58.033 33.333 0.00 0.00 33.44 1.52
3267 3832 3.386078 TCACCACTTTTTGCATAAAGGCA 59.614 39.130 26.56 8.60 43.19 4.75
3440 4006 3.761752 ACTTTGACAAAATGGGGATACGG 59.238 43.478 1.62 0.00 37.60 4.02
3647 4219 8.392372 ACATATATATGATGCCATTGAGATGC 57.608 34.615 26.05 0.00 37.15 3.91
3651 4223 0.317603 GATGCCATTGAGATGCGTGC 60.318 55.000 0.00 0.00 31.67 5.34
3718 4290 0.043637 TTTCCATACCCCTCCCTCGT 59.956 55.000 0.00 0.00 0.00 4.18
3742 4314 2.618053 GAGTCAGGTTCCATTACCACG 58.382 52.381 0.00 0.00 40.82 4.94
3758 4330 2.232941 ACCACGATGATAACGGAACAGT 59.767 45.455 0.00 0.00 34.93 3.55
3827 4399 1.155889 CGGTTGTGCTGTGCTTCATA 58.844 50.000 0.00 0.00 0.00 2.15
3850 4422 6.569179 AACGGTTGCACTAAAATCAAGTAT 57.431 33.333 0.00 0.00 0.00 2.12
3900 4472 4.080015 CCCTGAGTTAACCCCATATGTTCA 60.080 45.833 0.88 0.00 0.00 3.18
3907 4479 4.625225 AACCCCATATGTTCATTCCCTT 57.375 40.909 1.24 0.00 0.00 3.95
3918 4490 2.178580 TCATTCCCTTGCCAAATGGAC 58.821 47.619 2.98 0.00 37.39 4.02
3919 4491 1.135024 CATTCCCTTGCCAAATGGACG 60.135 52.381 2.98 0.00 37.39 4.79
3923 4495 2.596046 TTGCCAAATGGACGCCGT 60.596 55.556 2.98 0.00 37.39 5.68
3931 4503 3.570559 CAAATGGACGCCGTTGTTTAAT 58.429 40.909 0.00 0.00 32.46 1.40
3971 4543 6.109156 TGTTTACAAGAGCATAGAAGTCCA 57.891 37.500 0.00 0.00 0.00 4.02
3993 4565 1.985473 AAAAGTTTGTCCGTACCCCC 58.015 50.000 0.00 0.00 0.00 5.40
4013 4585 4.200092 CCCCTGTTTCTATTTGAGCTACC 58.800 47.826 0.00 0.00 0.00 3.18
4070 4642 9.003658 CCATCAAGTTTTCTAAAGAGCTTCTTA 57.996 33.333 0.00 0.00 35.27 2.10
4307 4882 9.713713 TTACATACTTACTGATGCTTTACACAA 57.286 29.630 0.00 0.00 0.00 3.33
4361 4936 9.573133 GTGGGTAAAACATTATCAGATTCAAAG 57.427 33.333 0.00 0.00 0.00 2.77
4398 4973 6.770746 TGGAGAATCTGTTACTGTAGGTAC 57.229 41.667 0.00 0.00 33.73 3.34
4401 4976 6.377712 GGAGAATCTGTTACTGTAGGTACTGT 59.622 42.308 5.20 5.20 37.43 3.55
4416 4991 6.197364 AGGTACTGTCTCGACAATTAGAAG 57.803 41.667 1.02 0.00 41.33 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 320 5.607939 TCCACTAATTAATCCTCTCGCAA 57.392 39.130 0.00 0.00 0.00 4.85
317 322 6.483640 ACAAATCCACTAATTAATCCTCTCGC 59.516 38.462 0.00 0.00 0.00 5.03
344 349 6.270000 TCTCCAAGAACTTGTATCTCCAAGAA 59.730 38.462 12.54 0.00 43.65 2.52
345 350 5.780282 TCTCCAAGAACTTGTATCTCCAAGA 59.220 40.000 12.54 0.69 43.65 3.02
346 351 6.042638 TCTCCAAGAACTTGTATCTCCAAG 57.957 41.667 12.54 0.00 45.83 3.61
347 352 5.046304 CCTCTCCAAGAACTTGTATCTCCAA 60.046 44.000 12.54 0.00 38.85 3.53
348 353 4.467795 CCTCTCCAAGAACTTGTATCTCCA 59.532 45.833 12.54 0.00 38.85 3.86
349 354 4.682050 GCCTCTCCAAGAACTTGTATCTCC 60.682 50.000 12.54 0.00 38.85 3.71
350 355 4.161377 AGCCTCTCCAAGAACTTGTATCTC 59.839 45.833 12.54 0.00 38.85 2.75
351 356 4.081198 CAGCCTCTCCAAGAACTTGTATCT 60.081 45.833 12.54 0.55 38.85 1.98
352 357 4.187694 CAGCCTCTCCAAGAACTTGTATC 58.812 47.826 12.54 0.00 38.85 2.24
353 358 3.620966 GCAGCCTCTCCAAGAACTTGTAT 60.621 47.826 12.54 0.00 38.85 2.29
354 359 2.289694 GCAGCCTCTCCAAGAACTTGTA 60.290 50.000 12.54 0.00 38.85 2.41
355 360 1.544314 GCAGCCTCTCCAAGAACTTGT 60.544 52.381 12.54 0.00 38.85 3.16
356 361 1.163554 GCAGCCTCTCCAAGAACTTG 58.836 55.000 7.49 7.49 40.13 3.16
357 362 1.063183 AGCAGCCTCTCCAAGAACTT 58.937 50.000 0.00 0.00 0.00 2.66
358 363 1.830477 CTAGCAGCCTCTCCAAGAACT 59.170 52.381 0.00 0.00 0.00 3.01
359 364 1.552792 ACTAGCAGCCTCTCCAAGAAC 59.447 52.381 0.00 0.00 0.00 3.01
458 479 2.231478 CGCTAACCCTCAGACAGAAGAA 59.769 50.000 0.00 0.00 0.00 2.52
540 561 1.937846 CTAACGACCGATCCACGCG 60.938 63.158 3.53 3.53 41.07 6.01
572 593 2.379972 TCCAGCTAGTAGAACTGAGCC 58.620 52.381 0.00 0.00 35.45 4.70
653 674 2.041216 AGAAACGAGGGGGCTAATTTGT 59.959 45.455 0.00 0.00 0.00 2.83
684 706 1.134946 CAAGCAAATCGAATCCCCCAC 59.865 52.381 0.00 0.00 0.00 4.61
685 707 1.272425 ACAAGCAAATCGAATCCCCCA 60.272 47.619 0.00 0.00 0.00 4.96
703 726 1.455849 CAGCACCCTGGAGGAAACA 59.544 57.895 0.00 0.00 39.89 2.83
704 727 1.973812 GCAGCACCCTGGAGGAAAC 60.974 63.158 0.00 0.00 39.54 2.78
705 728 2.436109 GCAGCACCCTGGAGGAAA 59.564 61.111 0.00 0.00 39.54 3.13
861 1288 4.436242 TCTAGATCGAGTTCACCACAAC 57.564 45.455 2.56 0.00 0.00 3.32
976 1403 2.685388 GCCTCTTAGAAAATGCTGGGTC 59.315 50.000 0.00 0.00 0.00 4.46
1090 1517 0.179000 ATGCTTTACGAGGAGCCCAG 59.821 55.000 0.00 0.00 38.11 4.45
1100 1527 9.396938 TCATATGAAAATGCATTATGCTTTACG 57.603 29.630 18.44 0.00 45.31 3.18
1123 1550 1.131638 ACACATATGCCCTCCGTCAT 58.868 50.000 1.58 0.00 0.00 3.06
1127 1554 2.615493 GGGATAACACATATGCCCTCCG 60.615 54.545 1.58 0.00 44.53 4.63
1457 1895 8.462811 TGCTAACCGAATTGCATTAATAAGAAA 58.537 29.630 0.00 0.00 0.00 2.52
1589 2094 2.101783 TCCAACTACGCCGAGGATTTA 58.898 47.619 0.00 0.00 0.00 1.40
1598 2103 0.788391 CAGAACGTTCCAACTACGCC 59.212 55.000 24.22 0.00 42.49 5.68
1608 2113 8.782533 ATACAAACAAATCTTTCAGAACGTTC 57.217 30.769 20.71 20.71 0.00 3.95
1626 2131 6.079120 GCATTGCCATTTGACAAATACAAAC 58.921 36.000 22.42 16.85 39.48 2.93
1660 2166 5.634118 TCACAAGGAAATGAAGAATCCACT 58.366 37.500 0.00 0.00 35.62 4.00
1668 2174 7.337689 TGATCTATGGTTCACAAGGAAATGAAG 59.662 37.037 0.00 0.00 37.23 3.02
1740 2246 2.533942 GCGTGGTTGCTGTTTAAACAAG 59.466 45.455 20.89 15.42 38.66 3.16
1809 2315 0.951040 GTGCACCCTCGAACTTCTGG 60.951 60.000 5.22 0.00 0.00 3.86
1839 2345 4.261867 GGATTGGAGTAAACGCCTGTTTTT 60.262 41.667 4.49 0.00 45.89 1.94
1866 2372 1.521010 CTGCTGATGTCCTGGCTCG 60.521 63.158 0.00 0.00 0.00 5.03
2309 2815 4.298103 ACAGCTCATCATCTCCAAAGTT 57.702 40.909 0.00 0.00 0.00 2.66
2659 3169 3.118371 AGGCTACCAATTCCCTTACGAAG 60.118 47.826 0.00 0.00 0.00 3.79
2691 3204 8.951787 TCTATTACCAAATTGCGTTACACTAT 57.048 30.769 0.00 0.00 0.00 2.12
2699 3212 5.938125 ACAGAACTCTATTACCAAATTGCGT 59.062 36.000 0.00 0.00 0.00 5.24
2700 3213 6.250819 CACAGAACTCTATTACCAAATTGCG 58.749 40.000 0.00 0.00 0.00 4.85
2916 3453 8.239314 GGTCATTACGAATCATCATTGCAATAT 58.761 33.333 12.53 0.00 0.00 1.28
2934 3471 7.307219 GCGTATAGTGGATTGAAAGGTCATTAC 60.307 40.741 0.00 0.00 32.48 1.89
2946 3483 4.099120 GCGATCTAGCGTATAGTGGATTG 58.901 47.826 0.00 0.00 0.00 2.67
2964 3501 5.336849 GGTTACTATTCCATCTGCTAGCGAT 60.337 44.000 10.77 12.64 0.00 4.58
3203 3768 9.461312 ACTGATAGCATTATGTTTAAACTCCAA 57.539 29.630 18.72 10.25 0.00 3.53
3204 3769 8.892723 CACTGATAGCATTATGTTTAAACTCCA 58.107 33.333 18.72 0.00 0.00 3.86
3205 3770 9.109393 TCACTGATAGCATTATGTTTAAACTCC 57.891 33.333 18.72 2.11 0.00 3.85
3210 3775 9.612066 TGACATCACTGATAGCATTATGTTTAA 57.388 29.630 4.97 0.00 0.00 1.52
3211 3776 9.783081 ATGACATCACTGATAGCATTATGTTTA 57.217 29.630 4.97 0.45 0.00 2.01
3212 3777 8.687292 ATGACATCACTGATAGCATTATGTTT 57.313 30.769 4.97 0.00 0.00 2.83
3213 3778 8.687292 AATGACATCACTGATAGCATTATGTT 57.313 30.769 13.13 0.00 29.58 2.71
3214 3779 9.955102 ATAATGACATCACTGATAGCATTATGT 57.045 29.630 22.63 11.51 37.02 2.29
3217 3782 9.223099 CCAATAATGACATCACTGATAGCATTA 57.777 33.333 18.62 18.62 34.72 1.90
3218 3783 7.940688 TCCAATAATGACATCACTGATAGCATT 59.059 33.333 16.60 16.60 33.17 3.56
3219 3784 7.455891 TCCAATAATGACATCACTGATAGCAT 58.544 34.615 0.00 0.00 0.00 3.79
3220 3785 6.829849 TCCAATAATGACATCACTGATAGCA 58.170 36.000 0.00 0.00 0.00 3.49
3489 4055 8.328575 TGGTGACAAATTCTTCACAAGAACGG 62.329 42.308 16.98 0.00 43.82 4.44
3647 4219 4.274069 GCATACATACTTCACAATGCACG 58.726 43.478 0.00 0.00 39.53 5.34
3651 4223 4.570369 TCACGGCATACATACTTCACAATG 59.430 41.667 0.00 0.00 0.00 2.82
3718 4290 2.307686 GGTAATGGAACCTGACTCCCAA 59.692 50.000 0.00 0.00 36.53 4.12
3742 4314 5.575957 TCTCGTTACTGTTCCGTTATCATC 58.424 41.667 0.00 0.00 0.00 2.92
3758 4330 5.270083 CAACAATGTGCAAACTTCTCGTTA 58.730 37.500 0.00 0.00 33.90 3.18
3814 4386 1.535028 CAACCGTTATGAAGCACAGCA 59.465 47.619 0.00 0.00 0.00 4.41
3827 4399 4.911514 ACTTGATTTTAGTGCAACCGTT 57.088 36.364 0.00 0.00 37.80 4.44
3900 4472 1.185315 CGTCCATTTGGCAAGGGAAT 58.815 50.000 20.11 0.63 44.48 3.01
3907 4479 2.596046 AACGGCGTCCATTTGGCA 60.596 55.556 15.17 0.00 34.44 4.92
3943 4515 8.451908 ACTTCTATGCTCTTGTAAACAAAACT 57.548 30.769 0.00 0.00 35.15 2.66
3993 4565 3.309954 GCGGTAGCTCAAATAGAAACAGG 59.690 47.826 0.00 0.00 41.01 4.00
4013 4585 5.340667 GCAAGTTTAAAATCACTCTTCAGCG 59.659 40.000 0.00 0.00 0.00 5.18
4173 4745 6.712276 AGTTCAAATTCCGTTATTCTCCTCT 58.288 36.000 0.00 0.00 0.00 3.69
4174 4746 6.986904 AGTTCAAATTCCGTTATTCTCCTC 57.013 37.500 0.00 0.00 0.00 3.71
4175 4747 7.715686 GGATAGTTCAAATTCCGTTATTCTCCT 59.284 37.037 0.00 0.00 0.00 3.69
4307 4882 4.082026 GCAACATGTTCCCAGATTAGCTTT 60.082 41.667 8.48 0.00 0.00 3.51
4361 4936 7.428826 ACAGATTCTCCAACAGAAATCAAAAC 58.571 34.615 0.00 0.00 44.66 2.43
4398 4973 5.885881 AGTAGCTTCTAATTGTCGAGACAG 58.114 41.667 6.03 0.00 42.94 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.