Multiple sequence alignment - TraesCS2A01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G279400 chr2A 100.000 3311 0 0 1 3311 464934609 464937919 0.000000e+00 6115.0
1 TraesCS2A01G279400 chr2A 97.064 1567 28 3 305 1856 465342761 465344324 0.000000e+00 2623.0
2 TraesCS2A01G279400 chr2A 92.432 621 7 8 1848 2428 465344662 465345282 0.000000e+00 850.0
3 TraesCS2A01G279400 chr2A 92.035 565 25 6 1 559 465330750 465331300 0.000000e+00 776.0
4 TraesCS2A01G279400 chr2A 97.118 451 11 1 2861 3311 464953845 464954293 0.000000e+00 760.0
5 TraesCS2A01G279400 chr2A 96.145 441 15 1 2861 3301 465345273 465345711 0.000000e+00 719.0
6 TraesCS2A01G279400 chr2A 92.396 434 29 3 2425 2858 470637687 470638116 1.690000e-172 616.0
7 TraesCS2A01G279400 chr2A 98.058 309 6 0 1 309 465338140 465338448 3.760000e-149 538.0
8 TraesCS2A01G279400 chr2A 92.683 123 8 1 560 681 465331335 465331457 3.400000e-40 176.0
9 TraesCS2A01G279400 chr2A 97.917 96 2 0 2333 2428 464953759 464953854 2.040000e-37 167.0
10 TraesCS2A01G279400 chr2A 91.803 61 4 1 3104 3163 156480920 156480980 2.120000e-12 84.2
11 TraesCS2A01G279400 chr2D 95.761 1911 40 11 552 2427 349585280 349587184 0.000000e+00 3042.0
12 TraesCS2A01G279400 chr2D 94.785 441 20 2 2861 3300 349587176 349587614 0.000000e+00 684.0
13 TraesCS2A01G279400 chr2D 89.904 416 16 5 1 412 349584786 349585179 2.280000e-141 512.0
14 TraesCS2A01G279400 chr2D 94.253 87 2 2 475 559 349585174 349585259 2.680000e-26 130.0
15 TraesCS2A01G279400 chr2D 76.923 247 44 11 2612 2855 572918957 572919193 9.640000e-26 128.0
16 TraesCS2A01G279400 chr2D 98.333 60 1 0 3104 3163 145733496 145733437 4.520000e-19 106.0
17 TraesCS2A01G279400 chr6B 94.564 1913 46 22 557 2428 552513599 552515494 0.000000e+00 2904.0
18 TraesCS2A01G279400 chr6B 92.428 449 25 6 1 442 552513053 552513499 1.680000e-177 632.0
19 TraesCS2A01G279400 chr6B 89.423 104 4 3 2861 2964 552515485 552515581 1.250000e-24 124.0
20 TraesCS2A01G279400 chr6B 91.892 74 3 2 487 557 552513499 552513572 2.100000e-17 100.0
21 TraesCS2A01G279400 chr2B 95.366 1748 40 12 719 2428 416187832 416186088 0.000000e+00 2741.0
22 TraesCS2A01G279400 chr2B 93.839 422 17 6 26 442 416188718 416188301 7.800000e-176 627.0
23 TraesCS2A01G279400 chr2B 92.857 406 26 2 2897 3301 416185970 416185567 1.320000e-163 586.0
24 TraesCS2A01G279400 chr2B 89.286 336 31 5 2431 2763 450376004 450376337 1.840000e-112 416.0
25 TraesCS2A01G279400 chr2B 89.254 335 31 5 2430 2762 743327797 743328128 6.610000e-112 414.0
26 TraesCS2A01G279400 chr2B 90.000 120 4 4 557 676 416188201 416188090 7.400000e-32 148.0
27 TraesCS2A01G279400 chr2B 91.781 73 4 1 487 557 416188300 416188228 2.100000e-17 100.0
28 TraesCS2A01G279400 chr2B 97.959 49 1 0 2861 2909 416186097 416186049 5.890000e-13 86.1
29 TraesCS2A01G279400 chr3D 84.635 397 48 12 2430 2819 38510568 38510958 1.860000e-102 383.0
30 TraesCS2A01G279400 chr3D 88.889 63 7 0 2796 2858 578270603 578270541 9.850000e-11 78.7
31 TraesCS2A01G279400 chr1B 84.872 390 31 6 2426 2814 136295054 136295416 5.220000e-98 368.0
32 TraesCS2A01G279400 chr1B 78.841 345 57 13 2517 2855 571430978 571431312 5.560000e-53 219.0
33 TraesCS2A01G279400 chr7D 85.373 335 33 15 2424 2752 514759797 514760121 1.900000e-87 333.0
34 TraesCS2A01G279400 chr7D 82.073 357 45 15 2517 2864 374768026 374767680 1.500000e-73 287.0
35 TraesCS2A01G279400 chr7A 83.626 342 41 12 2427 2763 587516956 587517287 1.150000e-79 307.0
36 TraesCS2A01G279400 chr7A 81.977 344 46 13 2425 2763 166873008 166873340 9.050000e-71 278.0
37 TraesCS2A01G279400 chr4B 83.086 337 42 14 2430 2762 87712673 87712348 3.230000e-75 292.0
38 TraesCS2A01G279400 chr7B 88.584 219 23 2 2430 2647 631065405 631065188 7.050000e-67 265.0
39 TraesCS2A01G279400 chr7B 83.708 178 21 7 2680 2855 523803678 523803849 9.510000e-36 161.0
40 TraesCS2A01G279400 chr3B 87.192 203 23 3 2664 2865 561025722 561025522 9.240000e-56 228.0
41 TraesCS2A01G279400 chr6A 79.498 239 37 11 2621 2854 178079781 178080012 3.420000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G279400 chr2A 464934609 464937919 3310 False 6115.000000 6115 100.000000 1 3311 1 chr2A.!!$F2 3310
1 TraesCS2A01G279400 chr2A 465342761 465345711 2950 False 1397.333333 2623 95.213667 305 3301 3 chr2A.!!$F7 2996
2 TraesCS2A01G279400 chr2A 465330750 465331457 707 False 476.000000 776 92.359000 1 681 2 chr2A.!!$F6 680
3 TraesCS2A01G279400 chr2A 464953759 464954293 534 False 463.500000 760 97.517500 2333 3311 2 chr2A.!!$F5 978
4 TraesCS2A01G279400 chr2D 349584786 349587614 2828 False 1092.000000 3042 93.675750 1 3300 4 chr2D.!!$F2 3299
5 TraesCS2A01G279400 chr6B 552513053 552515581 2528 False 940.000000 2904 92.076750 1 2964 4 chr6B.!!$F1 2963
6 TraesCS2A01G279400 chr2B 416185567 416188718 3151 True 714.683333 2741 93.633667 26 3301 6 chr2B.!!$R1 3275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 836 0.17576 GTATGCCTGCGAGGACTTCA 59.824 55.0 6.4 0.0 37.67 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 3178 0.179056 ATCGGCCGGTTGATGGTAAG 60.179 55.0 27.83 0.0 0.0 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 2.959516 TGTCTGCGAGGTAACATGAAG 58.040 47.619 0.00 0.00 41.41 3.02
168 172 5.221126 CCATTCCTTTAGTATGGAAGCTTGC 60.221 44.000 11.58 11.58 44.37 4.01
321 351 3.118665 GCGGTTCCTAACATACTTACCCA 60.119 47.826 0.00 0.00 0.00 4.51
443 473 3.430236 CCACATGTCTCGTATGTTGCCTA 60.430 47.826 0.00 0.00 36.67 3.93
444 474 4.371786 CACATGTCTCGTATGTTGCCTAT 58.628 43.478 0.00 0.00 36.67 2.57
445 475 5.508994 CCACATGTCTCGTATGTTGCCTATA 60.509 44.000 0.00 0.00 36.67 1.31
446 476 6.159293 CACATGTCTCGTATGTTGCCTATAT 58.841 40.000 0.00 0.00 36.67 0.86
447 477 6.646653 CACATGTCTCGTATGTTGCCTATATT 59.353 38.462 0.00 0.00 36.67 1.28
448 478 6.868864 ACATGTCTCGTATGTTGCCTATATTC 59.131 38.462 0.00 0.00 35.32 1.75
449 479 5.458015 TGTCTCGTATGTTGCCTATATTCG 58.542 41.667 0.00 0.00 0.00 3.34
450 480 4.323868 GTCTCGTATGTTGCCTATATTCGC 59.676 45.833 0.00 0.00 0.00 4.70
451 481 4.022676 TCTCGTATGTTGCCTATATTCGCA 60.023 41.667 0.00 0.00 0.00 5.10
452 482 3.985279 TCGTATGTTGCCTATATTCGCAC 59.015 43.478 0.00 0.00 33.97 5.34
453 483 3.738791 CGTATGTTGCCTATATTCGCACA 59.261 43.478 0.00 0.57 33.97 4.57
454 484 4.376008 CGTATGTTGCCTATATTCGCACAC 60.376 45.833 0.00 1.04 33.97 3.82
455 485 3.260475 TGTTGCCTATATTCGCACACT 57.740 42.857 0.00 0.00 33.97 3.55
456 486 3.605634 TGTTGCCTATATTCGCACACTT 58.394 40.909 0.00 0.00 33.97 3.16
457 487 3.621268 TGTTGCCTATATTCGCACACTTC 59.379 43.478 0.00 0.00 33.97 3.01
458 488 3.819564 TGCCTATATTCGCACACTTCT 57.180 42.857 0.00 0.00 0.00 2.85
459 489 4.137116 TGCCTATATTCGCACACTTCTT 57.863 40.909 0.00 0.00 0.00 2.52
460 490 4.513442 TGCCTATATTCGCACACTTCTTT 58.487 39.130 0.00 0.00 0.00 2.52
461 491 4.570772 TGCCTATATTCGCACACTTCTTTC 59.429 41.667 0.00 0.00 0.00 2.62
462 492 4.811557 GCCTATATTCGCACACTTCTTTCT 59.188 41.667 0.00 0.00 0.00 2.52
463 493 5.294552 GCCTATATTCGCACACTTCTTTCTT 59.705 40.000 0.00 0.00 0.00 2.52
464 494 6.183360 GCCTATATTCGCACACTTCTTTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
465 495 7.011109 GCCTATATTCGCACACTTCTTTCTTTA 59.989 37.037 0.00 0.00 0.00 1.85
466 496 9.046296 CCTATATTCGCACACTTCTTTCTTTAT 57.954 33.333 0.00 0.00 0.00 1.40
469 499 6.612247 TTCGCACACTTCTTTCTTTATTCA 57.388 33.333 0.00 0.00 0.00 2.57
470 500 5.985781 TCGCACACTTCTTTCTTTATTCAC 58.014 37.500 0.00 0.00 0.00 3.18
471 501 5.049680 TCGCACACTTCTTTCTTTATTCACC 60.050 40.000 0.00 0.00 0.00 4.02
472 502 5.049405 CGCACACTTCTTTCTTTATTCACCT 60.049 40.000 0.00 0.00 0.00 4.00
473 503 6.513393 CGCACACTTCTTTCTTTATTCACCTT 60.513 38.462 0.00 0.00 0.00 3.50
474 504 7.203218 GCACACTTCTTTCTTTATTCACCTTT 58.797 34.615 0.00 0.00 0.00 3.11
475 505 7.379797 GCACACTTCTTTCTTTATTCACCTTTC 59.620 37.037 0.00 0.00 0.00 2.62
476 506 7.862873 CACACTTCTTTCTTTATTCACCTTTCC 59.137 37.037 0.00 0.00 0.00 3.13
477 507 7.780271 ACACTTCTTTCTTTATTCACCTTTCCT 59.220 33.333 0.00 0.00 0.00 3.36
478 508 9.284968 CACTTCTTTCTTTATTCACCTTTCCTA 57.715 33.333 0.00 0.00 0.00 2.94
479 509 9.862149 ACTTCTTTCTTTATTCACCTTTCCTAA 57.138 29.630 0.00 0.00 0.00 2.69
624 752 4.022935 TGAAATCAATCCAAGTGTGAGTGC 60.023 41.667 0.00 0.00 0.00 4.40
627 755 2.036604 TCAATCCAAGTGTGAGTGCGTA 59.963 45.455 0.00 0.00 0.00 4.42
700 836 0.175760 GTATGCCTGCGAGGACTTCA 59.824 55.000 6.40 0.00 37.67 3.02
701 837 1.123077 TATGCCTGCGAGGACTTCAT 58.877 50.000 6.40 3.35 37.67 2.57
982 1335 0.612453 GTCTCCCGTCTTCCTGGAGT 60.612 60.000 0.00 0.00 44.87 3.85
1292 1645 3.710722 AGGTTGCAGCCTCCTCCG 61.711 66.667 17.56 0.00 32.39 4.63
1390 1743 1.358759 GGTGTGTTTTCCAGGTGCG 59.641 57.895 0.00 0.00 0.00 5.34
1437 1790 3.622060 CTGCCACCCCGAAACCGAT 62.622 63.158 0.00 0.00 0.00 4.18
1903 2602 0.039437 GTCGCTCGAAGTCTTCCACA 60.039 55.000 7.01 0.00 0.00 4.17
1968 2667 1.963855 CATGTGGCGTCCGTCCAAA 60.964 57.895 4.79 1.06 35.01 3.28
2083 2802 3.825160 GATGAAGGGCGGCCGCATA 62.825 63.158 46.88 28.79 44.11 3.14
2236 2955 6.542005 TGTTCTTTGCATGAGTTTGAGAGTTA 59.458 34.615 0.00 0.00 0.00 2.24
2441 3184 9.952030 TGAATAATGTATGAGAAACACTTACCA 57.048 29.630 0.00 0.00 0.00 3.25
2445 3188 8.862325 AATGTATGAGAAACACTTACCATCAA 57.138 30.769 0.00 0.00 0.00 2.57
2446 3189 7.667043 TGTATGAGAAACACTTACCATCAAC 57.333 36.000 0.00 0.00 0.00 3.18
2447 3190 6.653320 TGTATGAGAAACACTTACCATCAACC 59.347 38.462 0.00 0.00 0.00 3.77
2448 3191 4.062293 TGAGAAACACTTACCATCAACCG 58.938 43.478 0.00 0.00 0.00 4.44
2449 3192 3.408634 AGAAACACTTACCATCAACCGG 58.591 45.455 0.00 0.00 0.00 5.28
2450 3193 1.530323 AACACTTACCATCAACCGGC 58.470 50.000 0.00 0.00 0.00 6.13
2451 3194 0.322187 ACACTTACCATCAACCGGCC 60.322 55.000 0.00 0.00 0.00 6.13
2452 3195 1.078708 ACTTACCATCAACCGGCCG 60.079 57.895 21.04 21.04 0.00 6.13
2453 3196 1.219664 CTTACCATCAACCGGCCGA 59.780 57.895 30.73 6.75 0.00 5.54
2454 3197 0.179056 CTTACCATCAACCGGCCGAT 60.179 55.000 30.73 6.36 0.00 4.18
2455 3198 1.069513 CTTACCATCAACCGGCCGATA 59.930 52.381 30.73 9.13 0.00 2.92
2456 3199 1.121378 TACCATCAACCGGCCGATAA 58.879 50.000 30.73 9.55 0.00 1.75
2457 3200 0.472471 ACCATCAACCGGCCGATAAT 59.528 50.000 30.73 11.68 0.00 1.28
2458 3201 1.695242 ACCATCAACCGGCCGATAATA 59.305 47.619 30.73 8.30 0.00 0.98
2459 3202 2.289444 ACCATCAACCGGCCGATAATAG 60.289 50.000 30.73 11.56 0.00 1.73
2460 3203 2.346803 CATCAACCGGCCGATAATAGG 58.653 52.381 30.73 10.69 0.00 2.57
2461 3204 0.682852 TCAACCGGCCGATAATAGGG 59.317 55.000 30.73 9.82 0.00 3.53
2466 3209 2.345991 GCCGATAATAGGGCCGCA 59.654 61.111 0.00 0.00 43.64 5.69
2467 3210 1.078426 GCCGATAATAGGGCCGCAT 60.078 57.895 0.00 0.00 43.64 4.73
2468 3211 1.090052 GCCGATAATAGGGCCGCATC 61.090 60.000 0.00 0.00 43.64 3.91
2469 3212 0.806102 CCGATAATAGGGCCGCATCG 60.806 60.000 18.74 18.74 38.51 3.84
2479 3222 4.033894 CCGCATCGGTCATCTTCC 57.966 61.111 0.00 0.00 42.73 3.46
2480 3223 1.143838 CCGCATCGGTCATCTTCCA 59.856 57.895 0.00 0.00 42.73 3.53
2481 3224 0.250038 CCGCATCGGTCATCTTCCAT 60.250 55.000 0.00 0.00 42.73 3.41
2482 3225 0.863799 CGCATCGGTCATCTTCCATG 59.136 55.000 0.00 0.00 0.00 3.66
2483 3226 0.590195 GCATCGGTCATCTTCCATGC 59.410 55.000 0.00 0.00 34.84 4.06
2484 3227 0.863799 CATCGGTCATCTTCCATGCG 59.136 55.000 0.00 0.00 0.00 4.73
2485 3228 0.465705 ATCGGTCATCTTCCATGCGT 59.534 50.000 0.00 0.00 0.00 5.24
2486 3229 0.460109 TCGGTCATCTTCCATGCGTG 60.460 55.000 0.00 0.00 0.00 5.34
2487 3230 0.460109 CGGTCATCTTCCATGCGTGA 60.460 55.000 7.72 0.00 0.00 4.35
2488 3231 1.009829 GGTCATCTTCCATGCGTGAC 58.990 55.000 7.72 0.00 38.69 3.67
2489 3232 1.675714 GGTCATCTTCCATGCGTGACA 60.676 52.381 7.72 0.00 40.60 3.58
2490 3233 1.394917 GTCATCTTCCATGCGTGACAC 59.605 52.381 7.72 0.00 39.10 3.67
2491 3234 0.371301 CATCTTCCATGCGTGACACG 59.629 55.000 23.43 23.43 45.88 4.49
2511 3254 2.392933 CGTCTCGCAGACTATCCTTC 57.607 55.000 12.45 0.00 42.92 3.46
2512 3255 1.671328 CGTCTCGCAGACTATCCTTCA 59.329 52.381 12.45 0.00 42.92 3.02
2513 3256 2.097629 CGTCTCGCAGACTATCCTTCAA 59.902 50.000 12.45 0.00 42.92 2.69
2514 3257 3.243234 CGTCTCGCAGACTATCCTTCAAT 60.243 47.826 12.45 0.00 42.92 2.57
2515 3258 4.023963 CGTCTCGCAGACTATCCTTCAATA 60.024 45.833 12.45 0.00 42.92 1.90
2516 3259 5.505819 CGTCTCGCAGACTATCCTTCAATAA 60.506 44.000 12.45 0.00 42.92 1.40
2517 3260 6.273825 GTCTCGCAGACTATCCTTCAATAAA 58.726 40.000 8.50 0.00 41.88 1.40
2518 3261 6.199342 GTCTCGCAGACTATCCTTCAATAAAC 59.801 42.308 8.50 0.00 41.88 2.01
2519 3262 6.096987 TCTCGCAGACTATCCTTCAATAAACT 59.903 38.462 0.00 0.00 0.00 2.66
2520 3263 6.273825 TCGCAGACTATCCTTCAATAAACTC 58.726 40.000 0.00 0.00 0.00 3.01
2521 3264 5.174035 CGCAGACTATCCTTCAATAAACTCG 59.826 44.000 0.00 0.00 0.00 4.18
2522 3265 5.050702 GCAGACTATCCTTCAATAAACTCGC 60.051 44.000 0.00 0.00 0.00 5.03
2523 3266 6.276847 CAGACTATCCTTCAATAAACTCGCT 58.723 40.000 0.00 0.00 0.00 4.93
2524 3267 6.758886 CAGACTATCCTTCAATAAACTCGCTT 59.241 38.462 0.00 0.00 0.00 4.68
2525 3268 7.278868 CAGACTATCCTTCAATAAACTCGCTTT 59.721 37.037 0.00 0.00 0.00 3.51
2526 3269 7.824779 AGACTATCCTTCAATAAACTCGCTTTT 59.175 33.333 0.00 0.00 0.00 2.27
2527 3270 7.752695 ACTATCCTTCAATAAACTCGCTTTTG 58.247 34.615 0.00 0.00 0.00 2.44
2528 3271 4.794169 TCCTTCAATAAACTCGCTTTTGC 58.206 39.130 0.00 0.00 43.23 3.68
2541 3284 2.872370 GCTTTTGCAACAGGAGCTATG 58.128 47.619 14.20 0.00 46.58 2.23
2542 3285 2.872370 CTTTTGCAACAGGAGCTATGC 58.128 47.619 0.00 0.00 39.22 3.14
2543 3286 2.205022 TTTGCAACAGGAGCTATGCT 57.795 45.000 0.00 0.00 43.88 3.79
2544 3287 2.205022 TTGCAACAGGAGCTATGCTT 57.795 45.000 0.00 0.00 39.88 3.91
2545 3288 1.742761 TGCAACAGGAGCTATGCTTC 58.257 50.000 8.68 0.00 39.88 3.86
2546 3289 1.020437 GCAACAGGAGCTATGCTTCC 58.980 55.000 0.00 0.00 39.88 3.46
2547 3290 1.293924 CAACAGGAGCTATGCTTCCG 58.706 55.000 0.00 0.00 39.88 4.30
2548 3291 1.134699 CAACAGGAGCTATGCTTCCGA 60.135 52.381 0.00 0.00 39.88 4.55
2549 3292 1.195115 ACAGGAGCTATGCTTCCGAA 58.805 50.000 0.00 0.00 39.88 4.30
2550 3293 1.555075 ACAGGAGCTATGCTTCCGAAA 59.445 47.619 0.00 0.00 39.88 3.46
2551 3294 1.936547 CAGGAGCTATGCTTCCGAAAC 59.063 52.381 0.00 0.00 39.88 2.78
2552 3295 1.555075 AGGAGCTATGCTTCCGAAACA 59.445 47.619 0.00 0.00 39.88 2.83
2553 3296 2.171448 AGGAGCTATGCTTCCGAAACAT 59.829 45.455 2.70 2.70 39.88 2.71
2554 3297 3.388024 AGGAGCTATGCTTCCGAAACATA 59.612 43.478 4.56 4.56 39.88 2.29
2555 3298 4.040952 AGGAGCTATGCTTCCGAAACATAT 59.959 41.667 4.99 0.00 39.88 1.78
2556 3299 4.153117 GGAGCTATGCTTCCGAAACATATG 59.847 45.833 0.00 0.00 39.88 1.78
2557 3300 3.499918 AGCTATGCTTCCGAAACATATGC 59.500 43.478 1.58 9.76 33.89 3.14
2558 3301 3.665323 GCTATGCTTCCGAAACATATGCG 60.665 47.826 1.58 0.00 0.00 4.73
2559 3302 1.013596 TGCTTCCGAAACATATGCGG 58.986 50.000 12.50 12.50 46.08 5.69
2560 3303 1.014352 GCTTCCGAAACATATGCGGT 58.986 50.000 16.63 0.00 45.02 5.68
2561 3304 1.268032 GCTTCCGAAACATATGCGGTG 60.268 52.381 16.63 12.72 45.02 4.94
2562 3305 2.006888 CTTCCGAAACATATGCGGTGT 58.993 47.619 16.63 0.00 45.02 4.16
2563 3306 2.102070 TCCGAAACATATGCGGTGTT 57.898 45.000 16.63 0.00 45.02 3.32
2564 3307 1.735018 TCCGAAACATATGCGGTGTTG 59.265 47.619 16.63 0.00 45.02 3.33
2565 3308 1.534028 CGAAACATATGCGGTGTTGC 58.466 50.000 1.58 0.33 39.57 4.17
2575 3318 3.546002 TGCGGTGTTGCAATACTTTAC 57.454 42.857 23.28 12.16 43.02 2.01
2576 3319 2.096169 TGCGGTGTTGCAATACTTTACG 60.096 45.455 23.28 18.74 43.02 3.18
2577 3320 2.158058 GCGGTGTTGCAATACTTTACGA 59.842 45.455 23.28 0.00 34.15 3.43
2578 3321 3.728600 CGGTGTTGCAATACTTTACGAC 58.271 45.455 23.28 6.39 0.00 4.34
2579 3322 3.719763 CGGTGTTGCAATACTTTACGACG 60.720 47.826 23.28 13.68 0.00 5.12
2580 3323 3.423907 GGTGTTGCAATACTTTACGACGG 60.424 47.826 23.28 0.00 0.00 4.79
2581 3324 2.737783 TGTTGCAATACTTTACGACGGG 59.262 45.455 0.59 0.00 0.00 5.28
2582 3325 2.738314 GTTGCAATACTTTACGACGGGT 59.262 45.455 0.59 0.00 0.00 5.28
2583 3326 2.609350 TGCAATACTTTACGACGGGTC 58.391 47.619 0.00 0.00 0.00 4.46
2584 3327 2.231964 TGCAATACTTTACGACGGGTCT 59.768 45.455 0.00 0.00 0.00 3.85
2585 3328 3.443329 TGCAATACTTTACGACGGGTCTA 59.557 43.478 0.00 0.00 0.00 2.59
2586 3329 4.098349 TGCAATACTTTACGACGGGTCTAT 59.902 41.667 0.00 0.00 0.00 1.98
2587 3330 4.443394 GCAATACTTTACGACGGGTCTATG 59.557 45.833 0.00 0.00 0.00 2.23
2588 3331 5.585390 CAATACTTTACGACGGGTCTATGT 58.415 41.667 0.00 0.00 0.00 2.29
2589 3332 5.841957 ATACTTTACGACGGGTCTATGTT 57.158 39.130 0.00 0.00 0.00 2.71
2590 3333 4.525912 ACTTTACGACGGGTCTATGTTT 57.474 40.909 0.00 0.00 0.00 2.83
2591 3334 4.886579 ACTTTACGACGGGTCTATGTTTT 58.113 39.130 0.00 0.00 0.00 2.43
2592 3335 6.024552 ACTTTACGACGGGTCTATGTTTTA 57.975 37.500 0.00 0.00 0.00 1.52
2593 3336 5.863935 ACTTTACGACGGGTCTATGTTTTAC 59.136 40.000 0.00 0.00 0.00 2.01
2594 3337 3.940209 ACGACGGGTCTATGTTTTACA 57.060 42.857 0.00 0.00 0.00 2.41
2595 3338 4.255833 ACGACGGGTCTATGTTTTACAA 57.744 40.909 0.00 0.00 0.00 2.41
2596 3339 3.989817 ACGACGGGTCTATGTTTTACAAC 59.010 43.478 0.00 0.00 0.00 3.32
2598 3341 4.448395 CGACGGGTCTATGTTTTACAACAA 59.552 41.667 0.00 0.00 46.17 2.83
2599 3342 5.050227 CGACGGGTCTATGTTTTACAACAAA 60.050 40.000 0.00 0.00 46.17 2.83
2600 3343 6.511444 CGACGGGTCTATGTTTTACAACAAAA 60.511 38.462 0.00 0.00 46.17 2.44
2601 3344 6.497437 ACGGGTCTATGTTTTACAACAAAAC 58.503 36.000 0.00 5.81 46.17 2.43
2602 3345 6.319405 ACGGGTCTATGTTTTACAACAAAACT 59.681 34.615 12.34 3.30 46.17 2.66
2603 3346 7.148035 ACGGGTCTATGTTTTACAACAAAACTT 60.148 33.333 12.34 9.24 46.17 2.66
2604 3347 7.377662 CGGGTCTATGTTTTACAACAAAACTTC 59.622 37.037 12.34 0.00 46.17 3.01
2605 3348 8.410912 GGGTCTATGTTTTACAACAAAACTTCT 58.589 33.333 12.34 2.74 46.17 2.85
2606 3349 9.447040 GGTCTATGTTTTACAACAAAACTTCTC 57.553 33.333 12.34 3.32 46.17 2.87
2610 3353 7.575332 TGTTTTACAACAAAACTTCTCTTGC 57.425 32.000 12.34 0.00 40.10 4.01
2611 3354 7.148641 TGTTTTACAACAAAACTTCTCTTGCA 58.851 30.769 12.34 0.00 40.10 4.08
2612 3355 7.653713 TGTTTTACAACAAAACTTCTCTTGCAA 59.346 29.630 12.34 0.00 40.10 4.08
2613 3356 8.491950 GTTTTACAACAAAACTTCTCTTGCAAA 58.508 29.630 0.00 0.00 37.22 3.68
2614 3357 8.770438 TTTACAACAAAACTTCTCTTGCAAAT 57.230 26.923 0.00 0.00 0.00 2.32
2615 3358 8.770438 TTACAACAAAACTTCTCTTGCAAATT 57.230 26.923 0.00 0.00 0.00 1.82
2616 3359 7.671495 ACAACAAAACTTCTCTTGCAAATTT 57.329 28.000 0.00 0.00 0.00 1.82
2617 3360 8.098220 ACAACAAAACTTCTCTTGCAAATTTT 57.902 26.923 0.00 0.00 0.00 1.82
2618 3361 8.567104 ACAACAAAACTTCTCTTGCAAATTTTT 58.433 25.926 0.00 0.00 0.00 1.94
2619 3362 9.054191 CAACAAAACTTCTCTTGCAAATTTTTC 57.946 29.630 0.00 0.00 0.00 2.29
2620 3363 8.552083 ACAAAACTTCTCTTGCAAATTTTTCT 57.448 26.923 0.00 0.00 0.00 2.52
2621 3364 8.445493 ACAAAACTTCTCTTGCAAATTTTTCTG 58.555 29.630 0.00 0.00 0.00 3.02
2622 3365 6.594284 AACTTCTCTTGCAAATTTTTCTGC 57.406 33.333 0.00 0.00 39.09 4.26
2623 3366 5.663456 ACTTCTCTTGCAAATTTTTCTGCA 58.337 33.333 0.00 0.00 46.50 4.41
2630 3373 5.467902 TGCAAATTTTTCTGCAACAAGAC 57.532 34.783 0.04 0.00 45.25 3.01
2631 3374 4.332268 TGCAAATTTTTCTGCAACAAGACC 59.668 37.500 0.04 0.00 45.25 3.85
2632 3375 4.571984 GCAAATTTTTCTGCAACAAGACCT 59.428 37.500 0.00 0.00 38.48 3.85
2633 3376 5.277011 GCAAATTTTTCTGCAACAAGACCTC 60.277 40.000 0.00 0.00 38.48 3.85
2634 3377 5.596836 AATTTTTCTGCAACAAGACCTCA 57.403 34.783 0.00 0.00 0.00 3.86
2635 3378 4.637483 TTTTTCTGCAACAAGACCTCAG 57.363 40.909 0.00 0.00 0.00 3.35
2636 3379 3.281727 TTTCTGCAACAAGACCTCAGT 57.718 42.857 0.00 0.00 0.00 3.41
2637 3380 3.281727 TTCTGCAACAAGACCTCAGTT 57.718 42.857 0.00 0.00 0.00 3.16
2638 3381 2.564771 TCTGCAACAAGACCTCAGTTG 58.435 47.619 0.00 0.00 44.01 3.16
2639 3382 2.092968 TCTGCAACAAGACCTCAGTTGT 60.093 45.455 13.22 0.00 43.31 3.32
2640 3383 3.133901 TCTGCAACAAGACCTCAGTTGTA 59.866 43.478 13.22 9.75 43.31 2.41
2641 3384 3.876914 CTGCAACAAGACCTCAGTTGTAA 59.123 43.478 13.22 5.58 43.31 2.41
2642 3385 4.265893 TGCAACAAGACCTCAGTTGTAAA 58.734 39.130 13.22 2.67 43.31 2.01
2643 3386 4.702612 TGCAACAAGACCTCAGTTGTAAAA 59.297 37.500 13.22 1.03 43.31 1.52
2644 3387 5.184096 TGCAACAAGACCTCAGTTGTAAAAA 59.816 36.000 13.22 0.00 43.31 1.94
2645 3388 6.127479 TGCAACAAGACCTCAGTTGTAAAAAT 60.127 34.615 13.22 0.00 43.31 1.82
2646 3389 7.067615 TGCAACAAGACCTCAGTTGTAAAAATA 59.932 33.333 13.22 0.00 43.31 1.40
2647 3390 8.082242 GCAACAAGACCTCAGTTGTAAAAATAT 58.918 33.333 13.22 0.00 43.31 1.28
2692 3435 4.701956 AAAATCCGCAACAAGACCTATG 57.298 40.909 0.00 0.00 0.00 2.23
2693 3436 3.350219 AATCCGCAACAAGACCTATGT 57.650 42.857 0.00 0.00 0.00 2.29
2694 3437 2.851263 TCCGCAACAAGACCTATGTT 57.149 45.000 0.00 0.00 41.50 2.71
2706 3449 9.777297 AACAAGACCTATGTTGCAAAAATAATT 57.223 25.926 0.00 0.00 39.43 1.40
2707 3450 9.423061 ACAAGACCTATGTTGCAAAAATAATTC 57.577 29.630 0.00 2.41 32.28 2.17
2708 3451 8.872845 CAAGACCTATGTTGCAAAAATAATTCC 58.127 33.333 0.00 0.00 0.00 3.01
2709 3452 7.257722 AGACCTATGTTGCAAAAATAATTCCG 58.742 34.615 0.00 0.00 0.00 4.30
2710 3453 5.810074 ACCTATGTTGCAAAAATAATTCCGC 59.190 36.000 0.00 0.00 0.00 5.54
2711 3454 5.809562 CCTATGTTGCAAAAATAATTCCGCA 59.190 36.000 0.00 0.00 0.00 5.69
2712 3455 6.312426 CCTATGTTGCAAAAATAATTCCGCAA 59.688 34.615 0.00 0.00 34.85 4.85
2713 3456 5.335827 TGTTGCAAAAATAATTCCGCAAC 57.664 34.783 15.95 15.95 46.42 4.17
2714 3457 5.335827 GTTGCAAAAATAATTCCGCAACA 57.664 34.783 17.44 0.00 46.00 3.33
2715 3458 5.742446 GTTGCAAAAATAATTCCGCAACAA 58.258 33.333 17.44 0.00 46.00 2.83
2716 3459 5.588568 TGCAAAAATAATTCCGCAACAAG 57.411 34.783 0.00 0.00 0.00 3.16
2717 3460 5.292765 TGCAAAAATAATTCCGCAACAAGA 58.707 33.333 0.00 0.00 0.00 3.02
2718 3461 5.176590 TGCAAAAATAATTCCGCAACAAGAC 59.823 36.000 0.00 0.00 0.00 3.01
2719 3462 5.389411 GCAAAAATAATTCCGCAACAAGACC 60.389 40.000 0.00 0.00 0.00 3.85
2720 3463 5.722021 AAAATAATTCCGCAACAAGACCT 57.278 34.783 0.00 0.00 0.00 3.85
2721 3464 4.701956 AATAATTCCGCAACAAGACCTG 57.298 40.909 0.00 0.00 0.00 4.00
2722 3465 0.598065 AATTCCGCAACAAGACCTGC 59.402 50.000 0.00 0.00 35.14 4.85
2726 3469 4.614673 GCAACAAGACCTGCGTTG 57.385 55.556 0.00 0.00 42.29 4.10
2727 3470 1.727467 GCAACAAGACCTGCGTTGT 59.273 52.632 11.67 0.00 41.60 3.32
2728 3471 0.941542 GCAACAAGACCTGCGTTGTA 59.058 50.000 11.67 0.00 41.60 2.41
2729 3472 1.069906 GCAACAAGACCTGCGTTGTAG 60.070 52.381 11.67 0.00 41.60 2.74
2730 3473 2.479837 CAACAAGACCTGCGTTGTAGA 58.520 47.619 0.00 0.00 35.83 2.59
2731 3474 2.869801 CAACAAGACCTGCGTTGTAGAA 59.130 45.455 0.00 0.00 35.83 2.10
2732 3475 3.188159 ACAAGACCTGCGTTGTAGAAA 57.812 42.857 0.00 0.00 35.10 2.52
2733 3476 3.740115 ACAAGACCTGCGTTGTAGAAAT 58.260 40.909 0.00 0.00 35.10 2.17
2734 3477 4.890088 ACAAGACCTGCGTTGTAGAAATA 58.110 39.130 0.00 0.00 35.10 1.40
2735 3478 5.302360 ACAAGACCTGCGTTGTAGAAATAA 58.698 37.500 0.00 0.00 35.10 1.40
2736 3479 5.761234 ACAAGACCTGCGTTGTAGAAATAAA 59.239 36.000 0.00 0.00 35.10 1.40
2737 3480 6.430000 ACAAGACCTGCGTTGTAGAAATAAAT 59.570 34.615 0.00 0.00 35.10 1.40
2738 3481 7.040686 ACAAGACCTGCGTTGTAGAAATAAATT 60.041 33.333 0.00 0.00 35.10 1.82
2739 3482 7.073342 AGACCTGCGTTGTAGAAATAAATTC 57.927 36.000 0.00 0.00 38.39 2.17
2741 3484 7.064728 AGACCTGCGTTGTAGAAATAAATTCTC 59.935 37.037 0.00 0.00 45.42 2.87
2742 3485 6.183360 ACCTGCGTTGTAGAAATAAATTCTCG 60.183 38.462 0.00 0.00 45.42 4.04
2743 3486 5.556470 TGCGTTGTAGAAATAAATTCTCGC 58.444 37.500 12.30 12.30 45.42 5.03
2746 3489 7.406232 CGTTGTAGAAATAAATTCTCGCAAC 57.594 36.000 18.35 18.35 45.42 4.17
2748 3491 8.722342 GTTGTAGAAATAAATTCTCGCAACAA 57.278 30.769 20.84 12.88 45.42 2.83
2749 3492 8.840867 GTTGTAGAAATAAATTCTCGCAACAAG 58.159 33.333 20.84 0.00 45.42 3.16
2750 3493 8.317891 TGTAGAAATAAATTCTCGCAACAAGA 57.682 30.769 0.00 0.00 45.42 3.02
2751 3494 8.227791 TGTAGAAATAAATTCTCGCAACAAGAC 58.772 33.333 0.00 0.00 45.42 3.01
2752 3495 6.612306 AGAAATAAATTCTCGCAACAAGACC 58.388 36.000 0.00 0.00 45.42 3.85
2753 3496 6.431234 AGAAATAAATTCTCGCAACAAGACCT 59.569 34.615 0.00 0.00 45.42 3.85
2754 3497 3.904136 AAATTCTCGCAACAAGACCTG 57.096 42.857 0.00 0.00 0.00 4.00
2755 3498 2.550830 ATTCTCGCAACAAGACCTGT 57.449 45.000 0.00 0.00 41.27 4.00
2756 3499 1.581934 TTCTCGCAACAAGACCTGTG 58.418 50.000 0.00 0.00 38.67 3.66
2757 3500 0.464036 TCTCGCAACAAGACCTGTGT 59.536 50.000 0.00 0.00 38.67 3.72
2758 3501 1.134521 TCTCGCAACAAGACCTGTGTT 60.135 47.619 0.00 0.00 38.67 3.32
2762 3505 2.480224 CAACAAGACCTGTGTTGCAG 57.520 50.000 7.04 0.00 46.63 4.41
2763 3506 1.745087 CAACAAGACCTGTGTTGCAGT 59.255 47.619 7.04 0.00 46.63 4.40
2764 3507 2.942376 CAACAAGACCTGTGTTGCAGTA 59.058 45.455 7.04 0.00 46.63 2.74
2765 3508 3.492102 ACAAGACCTGTGTTGCAGTAT 57.508 42.857 7.04 0.00 43.55 2.12
2766 3509 3.141398 ACAAGACCTGTGTTGCAGTATG 58.859 45.455 7.04 0.00 43.55 2.39
2767 3510 3.181455 ACAAGACCTGTGTTGCAGTATGA 60.181 43.478 7.04 0.00 43.55 2.15
2768 3511 3.769739 AGACCTGTGTTGCAGTATGAA 57.230 42.857 0.00 0.00 43.55 2.57
2769 3512 3.668447 AGACCTGTGTTGCAGTATGAAG 58.332 45.455 0.00 0.00 43.55 3.02
2770 3513 3.324846 AGACCTGTGTTGCAGTATGAAGA 59.675 43.478 0.00 0.00 43.55 2.87
2771 3514 3.403038 ACCTGTGTTGCAGTATGAAGAC 58.597 45.455 0.00 0.00 43.55 3.01
2772 3515 2.413112 CCTGTGTTGCAGTATGAAGACG 59.587 50.000 0.00 0.00 43.55 4.18
2773 3516 1.798223 TGTGTTGCAGTATGAAGACGC 59.202 47.619 0.00 0.00 39.69 5.19
2774 3517 1.067693 TGTTGCAGTATGAAGACGCG 58.932 50.000 3.53 3.53 39.69 6.01
2775 3518 1.068474 GTTGCAGTATGAAGACGCGT 58.932 50.000 13.85 13.85 39.69 6.01
2776 3519 1.459592 GTTGCAGTATGAAGACGCGTT 59.540 47.619 15.53 0.00 39.69 4.84
2777 3520 1.346365 TGCAGTATGAAGACGCGTTC 58.654 50.000 15.53 8.90 39.69 3.95
2778 3521 0.294887 GCAGTATGAAGACGCGTTCG 59.705 55.000 15.53 0.00 39.69 3.95
2788 3531 2.803670 CGCGTTCGTCCGTGTGAT 60.804 61.111 0.00 0.00 33.84 3.06
2789 3532 2.769617 GCGTTCGTCCGTGTGATG 59.230 61.111 0.00 0.00 0.00 3.07
2790 3533 2.769617 CGTTCGTCCGTGTGATGC 59.230 61.111 0.00 0.00 0.00 3.91
2791 3534 2.769617 GTTCGTCCGTGTGATGCG 59.230 61.111 0.00 0.00 0.00 4.73
2798 3541 3.362581 CCGTGTGATGCGGTAATCT 57.637 52.632 0.00 0.00 43.84 2.40
2799 3542 0.930310 CCGTGTGATGCGGTAATCTG 59.070 55.000 0.00 0.00 43.84 2.90
2800 3543 1.470805 CCGTGTGATGCGGTAATCTGA 60.471 52.381 0.00 0.00 43.84 3.27
2801 3544 1.588404 CGTGTGATGCGGTAATCTGAC 59.412 52.381 0.00 0.00 0.00 3.51
2802 3545 1.588404 GTGTGATGCGGTAATCTGACG 59.412 52.381 0.00 0.00 0.00 4.35
2803 3546 1.209128 GTGATGCGGTAATCTGACGG 58.791 55.000 0.00 0.00 0.00 4.79
2804 3547 0.529773 TGATGCGGTAATCTGACGGC 60.530 55.000 0.00 0.00 43.77 5.68
2805 3548 0.249489 GATGCGGTAATCTGACGGCT 60.249 55.000 7.47 0.00 43.83 5.52
2806 3549 0.249489 ATGCGGTAATCTGACGGCTC 60.249 55.000 7.47 0.00 43.83 4.70
2807 3550 1.944676 GCGGTAATCTGACGGCTCG 60.945 63.158 0.00 0.00 41.17 5.03
2808 3551 1.944676 CGGTAATCTGACGGCTCGC 60.945 63.158 0.00 0.00 0.00 5.03
2809 3552 1.944676 GGTAATCTGACGGCTCGCG 60.945 63.158 0.00 0.00 0.00 5.87
2810 3553 1.944676 GTAATCTGACGGCTCGCGG 60.945 63.158 6.13 0.00 0.00 6.46
2811 3554 3.768185 TAATCTGACGGCTCGCGGC 62.768 63.158 6.13 8.86 40.90 6.53
2825 3568 2.438434 CGGCCCGGCTGATCTTTT 60.438 61.111 13.55 0.00 37.02 2.27
2826 3569 1.153249 CGGCCCGGCTGATCTTTTA 60.153 57.895 13.55 0.00 37.02 1.52
2827 3570 0.746563 CGGCCCGGCTGATCTTTTAA 60.747 55.000 13.55 0.00 37.02 1.52
2828 3571 1.470051 GGCCCGGCTGATCTTTTAAA 58.530 50.000 9.86 0.00 0.00 1.52
2829 3572 1.822371 GGCCCGGCTGATCTTTTAAAA 59.178 47.619 9.86 0.00 0.00 1.52
2830 3573 2.232696 GGCCCGGCTGATCTTTTAAAAA 59.767 45.455 9.86 0.00 0.00 1.94
2831 3574 3.511699 GCCCGGCTGATCTTTTAAAAAG 58.488 45.455 0.71 0.00 0.00 2.27
2832 3575 3.192633 GCCCGGCTGATCTTTTAAAAAGA 59.807 43.478 0.71 0.00 0.00 2.52
2833 3576 4.142160 GCCCGGCTGATCTTTTAAAAAGAT 60.142 41.667 0.71 0.00 39.53 2.40
2842 3585 4.789784 TCTTTTAAAAAGATCAACCGGCG 58.210 39.130 0.00 0.00 0.00 6.46
2843 3586 3.562567 TTTAAAAAGATCAACCGGCGG 57.437 42.857 27.06 27.06 0.00 6.13
2844 3587 2.476126 TAAAAAGATCAACCGGCGGA 57.524 45.000 35.78 11.41 0.00 5.54
2845 3588 0.879090 AAAAAGATCAACCGGCGGAC 59.121 50.000 35.78 17.02 0.00 4.79
2846 3589 1.296056 AAAAGATCAACCGGCGGACG 61.296 55.000 35.78 22.47 43.80 4.79
2847 3590 2.444700 AAAGATCAACCGGCGGACGT 62.445 55.000 35.78 14.66 42.24 4.34
2848 3591 3.186047 GATCAACCGGCGGACGTG 61.186 66.667 35.78 25.33 42.24 4.49
2849 3592 3.927163 GATCAACCGGCGGACGTGT 62.927 63.158 35.78 14.12 42.24 4.49
2850 3593 2.546645 GATCAACCGGCGGACGTGTA 62.547 60.000 35.78 16.02 42.24 2.90
2851 3594 2.552585 ATCAACCGGCGGACGTGTAG 62.553 60.000 35.78 13.19 42.24 2.74
2852 3595 4.729856 AACCGGCGGACGTGTAGC 62.730 66.667 35.78 0.00 42.24 3.58
2855 3598 4.710695 CGGCGGACGTGTAGCACA 62.711 66.667 0.00 0.00 37.93 4.57
2856 3599 3.110178 GGCGGACGTGTAGCACAC 61.110 66.667 0.00 8.75 45.26 3.82
2857 3600 3.110178 GCGGACGTGTAGCACACC 61.110 66.667 0.00 2.14 45.93 4.16
2858 3601 2.337170 CGGACGTGTAGCACACCA 59.663 61.111 0.00 0.00 45.93 4.17
2859 3602 2.019951 CGGACGTGTAGCACACCAC 61.020 63.158 0.00 7.48 45.93 4.16
2860 3603 1.068417 GGACGTGTAGCACACCACA 59.932 57.895 0.00 0.00 45.93 4.17
2861 3604 0.320421 GGACGTGTAGCACACCACAT 60.320 55.000 0.00 0.00 45.93 3.21
2862 3605 1.067425 GGACGTGTAGCACACCACATA 60.067 52.381 0.00 0.00 45.93 2.29
2863 3606 2.610976 GGACGTGTAGCACACCACATAA 60.611 50.000 0.00 0.00 45.93 1.90
2864 3607 3.259064 GACGTGTAGCACACCACATAAT 58.741 45.455 0.00 0.00 45.93 1.28
2865 3608 3.000041 ACGTGTAGCACACCACATAATG 59.000 45.455 11.99 0.00 45.93 1.90
2866 3609 3.000041 CGTGTAGCACACCACATAATGT 59.000 45.455 11.99 0.00 45.93 2.71
2867 3610 4.177783 CGTGTAGCACACCACATAATGTA 58.822 43.478 11.99 0.00 45.93 2.29
2868 3611 4.808895 CGTGTAGCACACCACATAATGTAT 59.191 41.667 11.99 0.00 45.93 2.29
2869 3612 5.276820 CGTGTAGCACACCACATAATGTATG 60.277 44.000 11.99 0.00 45.93 2.39
2909 3743 9.677567 GAACTGAATATTCTGTTTTGCTTTGTA 57.322 29.630 29.95 3.04 45.41 2.41
2972 3808 8.525290 AATGCATAGGTTAGAAATAAACTGCT 57.475 30.769 0.00 0.00 30.87 4.24
2973 3809 7.938140 TGCATAGGTTAGAAATAAACTGCTT 57.062 32.000 0.00 0.00 30.87 3.91
3019 3855 2.802057 GCACGTCTAACTTATCGGCCAT 60.802 50.000 2.24 0.00 0.00 4.40
3083 3919 1.528129 CAACAGGTTCAGAGCCCTTC 58.472 55.000 0.00 0.00 0.00 3.46
3210 4046 3.942829 TGAGCACTCAATTCTTGGTAGG 58.057 45.455 0.00 0.00 36.53 3.18
3265 4101 1.134007 TGATAGGCCTGAACCATGCTG 60.134 52.381 17.99 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.893302 TGGAAGTCCACCAAATACTTATTGATT 59.107 33.333 0.00 0.00 42.01 2.57
59 60 4.759693 TCATGTTACCTCGCAGACAAAAAT 59.240 37.500 0.00 0.00 0.00 1.82
84 86 8.398665 GTGTGTTCATATCTTAATGGAAGGTTC 58.601 37.037 0.00 0.00 35.67 3.62
321 351 7.707624 AACATATGAGATGGTTGTTTCATGT 57.292 32.000 10.38 0.00 32.83 3.21
443 473 8.946085 TGAATAAAGAAAGAAGTGTGCGAATAT 58.054 29.630 0.00 0.00 0.00 1.28
444 474 8.227791 GTGAATAAAGAAAGAAGTGTGCGAATA 58.772 33.333 0.00 0.00 0.00 1.75
445 475 7.078228 GTGAATAAAGAAAGAAGTGTGCGAAT 58.922 34.615 0.00 0.00 0.00 3.34
446 476 6.427150 GTGAATAAAGAAAGAAGTGTGCGAA 58.573 36.000 0.00 0.00 0.00 4.70
447 477 5.049680 GGTGAATAAAGAAAGAAGTGTGCGA 60.050 40.000 0.00 0.00 0.00 5.10
448 478 5.049405 AGGTGAATAAAGAAAGAAGTGTGCG 60.049 40.000 0.00 0.00 0.00 5.34
449 479 6.319141 AGGTGAATAAAGAAAGAAGTGTGC 57.681 37.500 0.00 0.00 0.00 4.57
450 480 7.862873 GGAAAGGTGAATAAAGAAAGAAGTGTG 59.137 37.037 0.00 0.00 0.00 3.82
451 481 7.780271 AGGAAAGGTGAATAAAGAAAGAAGTGT 59.220 33.333 0.00 0.00 0.00 3.55
452 482 8.171164 AGGAAAGGTGAATAAAGAAAGAAGTG 57.829 34.615 0.00 0.00 0.00 3.16
453 483 9.862149 TTAGGAAAGGTGAATAAAGAAAGAAGT 57.138 29.630 0.00 0.00 0.00 3.01
624 752 8.495949 ACAAATCAAACATAGAAGAGTGTTACG 58.504 33.333 0.00 0.00 37.56 3.18
627 755 9.736023 GAAACAAATCAAACATAGAAGAGTGTT 57.264 29.630 0.00 0.00 40.06 3.32
982 1335 4.929315 GACGGCCGGCGCGTATTA 62.929 66.667 32.97 0.00 35.02 0.98
1437 1790 3.266636 CATGACGCTGGGTATGTTGTTA 58.733 45.455 0.00 0.00 0.00 2.41
1903 2602 4.101448 GCAGGGGGTGACGCTCAT 62.101 66.667 1.37 0.00 40.92 2.90
2083 2802 2.360980 CCGAGTCCCCTGTCCTCT 59.639 66.667 0.00 0.00 0.00 3.69
2428 3171 3.408634 CCGGTTGATGGTAAGTGTTTCT 58.591 45.455 0.00 0.00 0.00 2.52
2429 3172 2.095415 GCCGGTTGATGGTAAGTGTTTC 60.095 50.000 1.90 0.00 0.00 2.78
2430 3173 1.883926 GCCGGTTGATGGTAAGTGTTT 59.116 47.619 1.90 0.00 0.00 2.83
2431 3174 1.530323 GCCGGTTGATGGTAAGTGTT 58.470 50.000 1.90 0.00 0.00 3.32
2432 3175 0.322187 GGCCGGTTGATGGTAAGTGT 60.322 55.000 1.90 0.00 0.00 3.55
2433 3176 1.366111 CGGCCGGTTGATGGTAAGTG 61.366 60.000 20.10 0.00 0.00 3.16
2434 3177 1.078708 CGGCCGGTTGATGGTAAGT 60.079 57.895 20.10 0.00 0.00 2.24
2435 3178 0.179056 ATCGGCCGGTTGATGGTAAG 60.179 55.000 27.83 0.00 0.00 2.34
2436 3179 1.121378 TATCGGCCGGTTGATGGTAA 58.879 50.000 27.83 0.77 0.00 2.85
2437 3180 1.121378 TTATCGGCCGGTTGATGGTA 58.879 50.000 27.83 1.69 0.00 3.25
2438 3181 0.472471 ATTATCGGCCGGTTGATGGT 59.528 50.000 27.83 1.50 0.00 3.55
2439 3182 2.346803 CTATTATCGGCCGGTTGATGG 58.653 52.381 27.83 14.04 0.00 3.51
2440 3183 2.346803 CCTATTATCGGCCGGTTGATG 58.653 52.381 27.83 11.91 0.00 3.07
2441 3184 1.278127 CCCTATTATCGGCCGGTTGAT 59.722 52.381 27.83 18.11 0.00 2.57
2442 3185 0.682852 CCCTATTATCGGCCGGTTGA 59.317 55.000 27.83 11.37 0.00 3.18
2443 3186 0.953960 GCCCTATTATCGGCCGGTTG 60.954 60.000 27.83 9.32 39.39 3.77
2444 3187 1.373812 GCCCTATTATCGGCCGGTT 59.626 57.895 27.83 16.14 39.39 4.44
2445 3188 3.066198 GCCCTATTATCGGCCGGT 58.934 61.111 27.83 23.47 39.39 5.28
2449 3192 1.078426 ATGCGGCCCTATTATCGGC 60.078 57.895 0.00 0.00 44.92 5.54
2450 3193 0.806102 CGATGCGGCCCTATTATCGG 60.806 60.000 9.47 0.00 37.55 4.18
2451 3194 0.806102 CCGATGCGGCCCTATTATCG 60.806 60.000 10.16 10.16 41.17 2.92
2452 3195 3.065575 CCGATGCGGCCCTATTATC 57.934 57.895 0.00 0.00 41.17 1.75
2463 3206 0.863799 CATGGAAGATGACCGATGCG 59.136 55.000 0.00 0.00 0.00 4.73
2464 3207 0.590195 GCATGGAAGATGACCGATGC 59.410 55.000 0.00 0.00 36.08 3.91
2465 3208 0.863799 CGCATGGAAGATGACCGATG 59.136 55.000 0.00 0.00 0.00 3.84
2466 3209 0.465705 ACGCATGGAAGATGACCGAT 59.534 50.000 0.00 0.00 0.00 4.18
2467 3210 0.460109 CACGCATGGAAGATGACCGA 60.460 55.000 0.00 0.00 0.00 4.69
2468 3211 0.460109 TCACGCATGGAAGATGACCG 60.460 55.000 0.00 0.00 0.00 4.79
2469 3212 1.009829 GTCACGCATGGAAGATGACC 58.990 55.000 0.00 0.00 34.83 4.02
2470 3213 1.394917 GTGTCACGCATGGAAGATGAC 59.605 52.381 0.00 0.00 40.08 3.06
2471 3214 1.725641 GTGTCACGCATGGAAGATGA 58.274 50.000 0.00 0.00 0.00 2.92
2472 3215 0.371301 CGTGTCACGCATGGAAGATG 59.629 55.000 13.22 0.00 33.65 2.90
2473 3216 2.754648 CGTGTCACGCATGGAAGAT 58.245 52.632 13.22 0.00 33.65 2.40
2474 3217 4.260194 CGTGTCACGCATGGAAGA 57.740 55.556 13.22 0.00 33.65 2.87
2493 3236 3.784701 TTGAAGGATAGTCTGCGAGAC 57.215 47.619 7.88 7.88 45.38 3.36
2494 3237 6.096987 AGTTTATTGAAGGATAGTCTGCGAGA 59.903 38.462 0.00 0.00 0.00 4.04
2495 3238 6.276847 AGTTTATTGAAGGATAGTCTGCGAG 58.723 40.000 0.00 0.00 0.00 5.03
2496 3239 6.222038 AGTTTATTGAAGGATAGTCTGCGA 57.778 37.500 0.00 0.00 0.00 5.10
2497 3240 5.174035 CGAGTTTATTGAAGGATAGTCTGCG 59.826 44.000 0.00 0.00 0.00 5.18
2498 3241 5.050702 GCGAGTTTATTGAAGGATAGTCTGC 60.051 44.000 0.00 0.00 0.00 4.26
2499 3242 6.276847 AGCGAGTTTATTGAAGGATAGTCTG 58.723 40.000 0.00 0.00 0.00 3.51
2500 3243 6.472686 AGCGAGTTTATTGAAGGATAGTCT 57.527 37.500 0.00 0.00 0.00 3.24
2501 3244 7.541122 AAAGCGAGTTTATTGAAGGATAGTC 57.459 36.000 0.00 0.00 0.00 2.59
2502 3245 7.626452 GCAAAAGCGAGTTTATTGAAGGATAGT 60.626 37.037 0.00 0.00 0.00 2.12
2503 3246 6.688813 GCAAAAGCGAGTTTATTGAAGGATAG 59.311 38.462 0.00 0.00 0.00 2.08
2504 3247 6.150307 TGCAAAAGCGAGTTTATTGAAGGATA 59.850 34.615 0.00 0.00 0.00 2.59
2505 3248 5.048083 TGCAAAAGCGAGTTTATTGAAGGAT 60.048 36.000 0.00 0.00 0.00 3.24
2506 3249 4.277174 TGCAAAAGCGAGTTTATTGAAGGA 59.723 37.500 0.00 0.00 0.00 3.36
2507 3250 4.545610 TGCAAAAGCGAGTTTATTGAAGG 58.454 39.130 0.00 0.00 0.00 3.46
2508 3251 5.458452 TGTTGCAAAAGCGAGTTTATTGAAG 59.542 36.000 0.00 0.00 0.00 3.02
2509 3252 5.344066 TGTTGCAAAAGCGAGTTTATTGAA 58.656 33.333 0.00 0.00 0.00 2.69
2510 3253 4.926244 TGTTGCAAAAGCGAGTTTATTGA 58.074 34.783 0.00 0.00 0.00 2.57
2511 3254 4.148696 CCTGTTGCAAAAGCGAGTTTATTG 59.851 41.667 11.45 0.00 0.00 1.90
2512 3255 4.037446 TCCTGTTGCAAAAGCGAGTTTATT 59.963 37.500 11.45 0.00 0.00 1.40
2513 3256 3.568007 TCCTGTTGCAAAAGCGAGTTTAT 59.432 39.130 11.45 0.00 0.00 1.40
2514 3257 2.946329 TCCTGTTGCAAAAGCGAGTTTA 59.054 40.909 11.45 0.00 0.00 2.01
2515 3258 1.748493 TCCTGTTGCAAAAGCGAGTTT 59.252 42.857 11.45 0.00 0.00 2.66
2516 3259 1.334869 CTCCTGTTGCAAAAGCGAGTT 59.665 47.619 19.38 0.00 0.00 3.01
2517 3260 0.947244 CTCCTGTTGCAAAAGCGAGT 59.053 50.000 19.38 0.00 0.00 4.18
2518 3261 0.386478 GCTCCTGTTGCAAAAGCGAG 60.386 55.000 21.69 21.69 0.00 5.03
2519 3262 0.819259 AGCTCCTGTTGCAAAAGCGA 60.819 50.000 11.45 9.03 38.01 4.93
2520 3263 0.874390 TAGCTCCTGTTGCAAAAGCG 59.126 50.000 11.45 5.53 38.01 4.68
2521 3264 2.872370 CATAGCTCCTGTTGCAAAAGC 58.128 47.619 11.45 12.71 0.00 3.51
2522 3265 2.490903 AGCATAGCTCCTGTTGCAAAAG 59.509 45.455 9.89 9.89 37.56 2.27
2523 3266 2.517959 AGCATAGCTCCTGTTGCAAAA 58.482 42.857 0.00 0.00 37.56 2.44
2524 3267 2.205022 AGCATAGCTCCTGTTGCAAA 57.795 45.000 0.00 0.00 37.56 3.68
2525 3268 2.086869 GAAGCATAGCTCCTGTTGCAA 58.913 47.619 0.00 0.00 38.25 4.08
2526 3269 1.679944 GGAAGCATAGCTCCTGTTGCA 60.680 52.381 0.00 0.00 38.25 4.08
2527 3270 1.020437 GGAAGCATAGCTCCTGTTGC 58.980 55.000 0.00 0.00 38.25 4.17
2528 3271 1.134699 TCGGAAGCATAGCTCCTGTTG 60.135 52.381 0.00 0.00 38.25 3.33
2529 3272 1.195115 TCGGAAGCATAGCTCCTGTT 58.805 50.000 0.00 0.00 38.25 3.16
2530 3273 1.195115 TTCGGAAGCATAGCTCCTGT 58.805 50.000 0.00 0.00 38.25 4.00
2531 3274 1.936547 GTTTCGGAAGCATAGCTCCTG 59.063 52.381 0.00 0.00 38.25 3.86
2532 3275 1.555075 TGTTTCGGAAGCATAGCTCCT 59.445 47.619 2.96 0.00 38.25 3.69
2533 3276 2.024176 TGTTTCGGAAGCATAGCTCC 57.976 50.000 2.96 0.00 38.25 4.70
2534 3277 4.377841 GCATATGTTTCGGAAGCATAGCTC 60.378 45.833 24.75 15.55 38.25 4.09
2535 3278 3.499918 GCATATGTTTCGGAAGCATAGCT 59.500 43.478 24.75 12.10 42.56 3.32
2536 3279 3.665323 CGCATATGTTTCGGAAGCATAGC 60.665 47.826 24.75 23.77 0.00 2.97
2537 3280 3.120546 CCGCATATGTTTCGGAAGCATAG 60.121 47.826 24.75 18.87 45.53 2.23
2538 3281 2.805671 CCGCATATGTTTCGGAAGCATA 59.194 45.455 23.52 23.52 45.53 3.14
2539 3282 1.603802 CCGCATATGTTTCGGAAGCAT 59.396 47.619 21.14 21.14 45.53 3.79
2540 3283 1.013596 CCGCATATGTTTCGGAAGCA 58.986 50.000 13.22 9.73 45.53 3.91
2541 3284 1.014352 ACCGCATATGTTTCGGAAGC 58.986 50.000 22.19 0.00 45.53 3.86
2542 3285 2.006888 ACACCGCATATGTTTCGGAAG 58.993 47.619 22.19 16.59 45.53 3.46
2543 3286 2.102070 ACACCGCATATGTTTCGGAA 57.898 45.000 22.19 0.00 45.53 4.30
2544 3287 1.735018 CAACACCGCATATGTTTCGGA 59.265 47.619 22.19 0.00 45.53 4.55
2546 3289 1.135831 TGCAACACCGCATATGTTTCG 60.136 47.619 4.29 0.00 38.22 3.46
2547 3290 2.627863 TGCAACACCGCATATGTTTC 57.372 45.000 4.29 0.00 38.22 2.78
2548 3291 3.591196 ATTGCAACACCGCATATGTTT 57.409 38.095 0.00 0.00 42.62 2.83
2549 3292 3.694072 AGTATTGCAACACCGCATATGTT 59.306 39.130 3.76 0.00 42.62 2.71
2550 3293 3.278574 AGTATTGCAACACCGCATATGT 58.721 40.909 3.76 0.00 42.62 2.29
2551 3294 3.969117 AGTATTGCAACACCGCATATG 57.031 42.857 3.76 0.00 42.62 1.78
2552 3295 4.981806 AAAGTATTGCAACACCGCATAT 57.018 36.364 3.76 0.00 42.62 1.78
2553 3296 4.201734 CGTAAAGTATTGCAACACCGCATA 60.202 41.667 3.76 0.00 42.62 3.14
2554 3297 3.425625 CGTAAAGTATTGCAACACCGCAT 60.426 43.478 3.76 0.00 42.62 4.73
2555 3298 2.096169 CGTAAAGTATTGCAACACCGCA 60.096 45.455 3.76 0.00 41.03 5.69
2556 3299 2.158058 TCGTAAAGTATTGCAACACCGC 59.842 45.455 3.76 0.00 0.00 5.68
2557 3300 3.719763 CGTCGTAAAGTATTGCAACACCG 60.720 47.826 3.76 0.90 0.00 4.94
2558 3301 3.423907 CCGTCGTAAAGTATTGCAACACC 60.424 47.826 3.76 0.00 0.00 4.16
2559 3302 3.423907 CCCGTCGTAAAGTATTGCAACAC 60.424 47.826 0.00 0.00 0.00 3.32
2560 3303 2.737783 CCCGTCGTAAAGTATTGCAACA 59.262 45.455 0.00 0.00 0.00 3.33
2561 3304 2.738314 ACCCGTCGTAAAGTATTGCAAC 59.262 45.455 0.00 0.00 0.00 4.17
2562 3305 2.995258 GACCCGTCGTAAAGTATTGCAA 59.005 45.455 0.00 0.00 0.00 4.08
2563 3306 2.231964 AGACCCGTCGTAAAGTATTGCA 59.768 45.455 0.00 0.00 34.09 4.08
2564 3307 2.884827 AGACCCGTCGTAAAGTATTGC 58.115 47.619 0.00 0.00 34.09 3.56
2565 3308 5.585390 ACATAGACCCGTCGTAAAGTATTG 58.415 41.667 0.00 0.00 34.09 1.90
2566 3309 5.841957 ACATAGACCCGTCGTAAAGTATT 57.158 39.130 0.00 0.00 34.09 1.89
2567 3310 5.841957 AACATAGACCCGTCGTAAAGTAT 57.158 39.130 0.00 0.00 34.09 2.12
2568 3311 5.643379 AAACATAGACCCGTCGTAAAGTA 57.357 39.130 0.00 0.00 34.09 2.24
2569 3312 4.525912 AAACATAGACCCGTCGTAAAGT 57.474 40.909 0.00 0.00 34.09 2.66
2570 3313 5.863397 TGTAAAACATAGACCCGTCGTAAAG 59.137 40.000 0.00 0.00 34.09 1.85
2571 3314 5.777802 TGTAAAACATAGACCCGTCGTAAA 58.222 37.500 0.00 0.00 34.09 2.01
2572 3315 5.384063 TGTAAAACATAGACCCGTCGTAA 57.616 39.130 0.00 0.00 34.09 3.18
2573 3316 5.160641 GTTGTAAAACATAGACCCGTCGTA 58.839 41.667 0.00 0.00 34.09 3.43
2574 3317 3.940209 TGTAAAACATAGACCCGTCGT 57.060 42.857 0.00 0.00 34.09 4.34
2575 3318 3.989167 TGTTGTAAAACATAGACCCGTCG 59.011 43.478 0.00 0.00 34.09 5.12
2576 3319 5.927954 TTGTTGTAAAACATAGACCCGTC 57.072 39.130 0.00 0.00 32.01 4.79
2577 3320 6.319405 AGTTTTGTTGTAAAACATAGACCCGT 59.681 34.615 15.15 0.00 41.29 5.28
2578 3321 6.731164 AGTTTTGTTGTAAAACATAGACCCG 58.269 36.000 15.15 0.00 41.29 5.28
2579 3322 8.410912 AGAAGTTTTGTTGTAAAACATAGACCC 58.589 33.333 15.15 0.00 41.29 4.46
2580 3323 9.447040 GAGAAGTTTTGTTGTAAAACATAGACC 57.553 33.333 15.15 0.00 41.29 3.85
2584 3327 9.296400 GCAAGAGAAGTTTTGTTGTAAAACATA 57.704 29.630 15.15 0.00 41.29 2.29
2585 3328 7.816995 TGCAAGAGAAGTTTTGTTGTAAAACAT 59.183 29.630 15.15 5.59 41.29 2.71
2586 3329 7.148641 TGCAAGAGAAGTTTTGTTGTAAAACA 58.851 30.769 15.15 0.00 41.29 2.83
2587 3330 7.575332 TGCAAGAGAAGTTTTGTTGTAAAAC 57.425 32.000 5.36 7.06 39.67 2.43
2588 3331 8.594881 TTTGCAAGAGAAGTTTTGTTGTAAAA 57.405 26.923 14.05 8.64 32.22 1.52
2589 3332 8.770438 ATTTGCAAGAGAAGTTTTGTTGTAAA 57.230 26.923 17.13 17.13 37.20 2.01
2590 3333 8.770438 AATTTGCAAGAGAAGTTTTGTTGTAA 57.230 26.923 0.00 3.37 0.00 2.41
2591 3334 8.770438 AAATTTGCAAGAGAAGTTTTGTTGTA 57.230 26.923 0.00 0.00 0.00 2.41
2592 3335 7.671495 AAATTTGCAAGAGAAGTTTTGTTGT 57.329 28.000 0.00 0.00 0.00 3.32
2593 3336 8.953507 AAAAATTTGCAAGAGAAGTTTTGTTG 57.046 26.923 6.30 0.00 33.46 3.33
2594 3337 9.002600 AGAAAAATTTGCAAGAGAAGTTTTGTT 57.997 25.926 10.68 0.00 34.44 2.83
2595 3338 8.445493 CAGAAAAATTTGCAAGAGAAGTTTTGT 58.555 29.630 10.68 5.38 34.44 2.83
2596 3339 7.427318 GCAGAAAAATTTGCAAGAGAAGTTTTG 59.573 33.333 10.68 1.91 40.02 2.44
2597 3340 7.119553 TGCAGAAAAATTTGCAAGAGAAGTTTT 59.880 29.630 6.70 6.70 46.42 2.43
2598 3341 6.594937 TGCAGAAAAATTTGCAAGAGAAGTTT 59.405 30.769 0.00 0.00 46.42 2.66
2599 3342 6.108015 TGCAGAAAAATTTGCAAGAGAAGTT 58.892 32.000 0.00 0.00 46.42 2.66
2600 3343 5.663456 TGCAGAAAAATTTGCAAGAGAAGT 58.337 33.333 0.00 0.00 46.42 3.01
2609 3352 4.571984 AGGTCTTGTTGCAGAAAAATTTGC 59.428 37.500 0.00 0.00 40.67 3.68
2610 3353 5.811613 TGAGGTCTTGTTGCAGAAAAATTTG 59.188 36.000 0.00 0.00 0.00 2.32
2611 3354 5.976458 TGAGGTCTTGTTGCAGAAAAATTT 58.024 33.333 0.00 0.00 0.00 1.82
2612 3355 5.127682 ACTGAGGTCTTGTTGCAGAAAAATT 59.872 36.000 0.00 0.00 0.00 1.82
2613 3356 4.646492 ACTGAGGTCTTGTTGCAGAAAAAT 59.354 37.500 0.00 0.00 0.00 1.82
2614 3357 4.016444 ACTGAGGTCTTGTTGCAGAAAAA 58.984 39.130 0.00 0.00 0.00 1.94
2615 3358 3.620488 ACTGAGGTCTTGTTGCAGAAAA 58.380 40.909 0.00 0.00 0.00 2.29
2616 3359 3.281727 ACTGAGGTCTTGTTGCAGAAA 57.718 42.857 0.00 0.00 0.00 2.52
2617 3360 2.945008 CAACTGAGGTCTTGTTGCAGAA 59.055 45.455 0.00 0.00 35.39 3.02
2618 3361 2.092968 ACAACTGAGGTCTTGTTGCAGA 60.093 45.455 12.84 0.00 43.19 4.26
2619 3362 2.292267 ACAACTGAGGTCTTGTTGCAG 58.708 47.619 12.84 0.00 43.19 4.41
2620 3363 2.418368 ACAACTGAGGTCTTGTTGCA 57.582 45.000 12.84 0.00 43.19 4.08
2621 3364 4.893424 TTTACAACTGAGGTCTTGTTGC 57.107 40.909 12.84 0.00 43.19 4.17
2670 3413 4.522789 ACATAGGTCTTGTTGCGGATTTTT 59.477 37.500 0.00 0.00 0.00 1.94
2671 3414 4.079253 ACATAGGTCTTGTTGCGGATTTT 58.921 39.130 0.00 0.00 0.00 1.82
2672 3415 3.686016 ACATAGGTCTTGTTGCGGATTT 58.314 40.909 0.00 0.00 0.00 2.17
2673 3416 3.350219 ACATAGGTCTTGTTGCGGATT 57.650 42.857 0.00 0.00 0.00 3.01
2674 3417 3.009723 CAACATAGGTCTTGTTGCGGAT 58.990 45.455 3.87 0.00 45.10 4.18
2675 3418 2.422597 CAACATAGGTCTTGTTGCGGA 58.577 47.619 3.87 0.00 45.10 5.54
2676 3419 2.900122 CAACATAGGTCTTGTTGCGG 57.100 50.000 3.87 0.00 45.10 5.69
2680 3423 9.777297 AATTATTTTTGCAACATAGGTCTTGTT 57.223 25.926 0.00 0.00 37.79 2.83
2681 3424 9.423061 GAATTATTTTTGCAACATAGGTCTTGT 57.577 29.630 0.00 0.00 0.00 3.16
2682 3425 8.872845 GGAATTATTTTTGCAACATAGGTCTTG 58.127 33.333 0.00 0.00 0.00 3.02
2683 3426 7.759433 CGGAATTATTTTTGCAACATAGGTCTT 59.241 33.333 0.00 0.00 0.00 3.01
2684 3427 7.257722 CGGAATTATTTTTGCAACATAGGTCT 58.742 34.615 0.00 0.00 0.00 3.85
2685 3428 6.019881 GCGGAATTATTTTTGCAACATAGGTC 60.020 38.462 0.00 0.82 0.00 3.85
2686 3429 5.810074 GCGGAATTATTTTTGCAACATAGGT 59.190 36.000 0.00 0.00 0.00 3.08
2687 3430 5.809562 TGCGGAATTATTTTTGCAACATAGG 59.190 36.000 0.00 0.00 0.00 2.57
2688 3431 6.884096 TGCGGAATTATTTTTGCAACATAG 57.116 33.333 0.00 0.00 0.00 2.23
2693 3436 5.755375 TCTTGTTGCGGAATTATTTTTGCAA 59.245 32.000 0.00 0.00 39.73 4.08
2694 3437 5.176590 GTCTTGTTGCGGAATTATTTTTGCA 59.823 36.000 0.00 0.00 0.00 4.08
2695 3438 5.389411 GGTCTTGTTGCGGAATTATTTTTGC 60.389 40.000 0.00 0.00 0.00 3.68
2696 3439 5.925969 AGGTCTTGTTGCGGAATTATTTTTG 59.074 36.000 0.00 0.00 0.00 2.44
2697 3440 5.925969 CAGGTCTTGTTGCGGAATTATTTTT 59.074 36.000 0.00 0.00 0.00 1.94
2698 3441 5.469479 CAGGTCTTGTTGCGGAATTATTTT 58.531 37.500 0.00 0.00 0.00 1.82
2699 3442 4.618227 GCAGGTCTTGTTGCGGAATTATTT 60.618 41.667 0.00 0.00 0.00 1.40
2700 3443 3.119495 GCAGGTCTTGTTGCGGAATTATT 60.119 43.478 0.00 0.00 0.00 1.40
2701 3444 2.423538 GCAGGTCTTGTTGCGGAATTAT 59.576 45.455 0.00 0.00 0.00 1.28
2702 3445 1.810151 GCAGGTCTTGTTGCGGAATTA 59.190 47.619 0.00 0.00 0.00 1.40
2703 3446 0.598065 GCAGGTCTTGTTGCGGAATT 59.402 50.000 0.00 0.00 0.00 2.17
2704 3447 2.257353 GCAGGTCTTGTTGCGGAAT 58.743 52.632 0.00 0.00 0.00 3.01
2705 3448 3.744559 GCAGGTCTTGTTGCGGAA 58.255 55.556 0.00 0.00 0.00 4.30
2709 3452 0.941542 TACAACGCAGGTCTTGTTGC 59.058 50.000 4.38 0.00 45.18 4.17
2710 3453 2.479837 TCTACAACGCAGGTCTTGTTG 58.520 47.619 3.02 3.02 46.36 3.33
2711 3454 2.902705 TCTACAACGCAGGTCTTGTT 57.097 45.000 0.00 0.00 32.77 2.83
2712 3455 2.902705 TTCTACAACGCAGGTCTTGT 57.097 45.000 0.00 0.00 34.89 3.16
2713 3456 5.856126 TTATTTCTACAACGCAGGTCTTG 57.144 39.130 0.00 0.00 0.00 3.02
2714 3457 7.390718 AGAATTTATTTCTACAACGCAGGTCTT 59.609 33.333 0.00 0.00 43.03 3.01
2715 3458 6.879458 AGAATTTATTTCTACAACGCAGGTCT 59.121 34.615 0.00 0.00 43.03 3.85
2716 3459 7.073342 AGAATTTATTTCTACAACGCAGGTC 57.927 36.000 0.00 0.00 43.03 3.85
2717 3460 6.183360 CGAGAATTTATTTCTACAACGCAGGT 60.183 38.462 0.00 0.00 44.88 4.00
2718 3461 6.185399 CGAGAATTTATTTCTACAACGCAGG 58.815 40.000 0.00 0.00 44.88 4.85
2719 3462 5.672856 GCGAGAATTTATTTCTACAACGCAG 59.327 40.000 12.44 0.00 45.75 5.18
2720 3463 5.556470 GCGAGAATTTATTTCTACAACGCA 58.444 37.500 12.44 0.00 45.75 5.24
2721 3464 5.556470 TGCGAGAATTTATTTCTACAACGC 58.444 37.500 0.00 0.00 46.22 4.84
2722 3465 7.406232 GTTGCGAGAATTTATTTCTACAACG 57.594 36.000 14.00 5.82 44.88 4.10
2724 3467 8.779303 TCTTGTTGCGAGAATTTATTTCTACAA 58.221 29.630 0.00 0.00 44.88 2.41
2725 3468 8.227791 GTCTTGTTGCGAGAATTTATTTCTACA 58.772 33.333 0.00 0.00 44.88 2.74
2726 3469 7.692705 GGTCTTGTTGCGAGAATTTATTTCTAC 59.307 37.037 0.00 0.00 44.88 2.59
2727 3470 7.606456 AGGTCTTGTTGCGAGAATTTATTTCTA 59.394 33.333 0.00 0.00 44.88 2.10
2729 3472 6.524586 CAGGTCTTGTTGCGAGAATTTATTTC 59.475 38.462 0.00 0.00 34.31 2.17
2730 3473 6.016276 ACAGGTCTTGTTGCGAGAATTTATTT 60.016 34.615 0.00 0.00 36.31 1.40
2731 3474 5.473504 ACAGGTCTTGTTGCGAGAATTTATT 59.526 36.000 0.00 0.00 36.31 1.40
2732 3475 5.003804 ACAGGTCTTGTTGCGAGAATTTAT 58.996 37.500 0.00 0.00 36.31 1.40
2733 3476 4.213270 CACAGGTCTTGTTGCGAGAATTTA 59.787 41.667 0.00 0.00 38.16 1.40
2734 3477 3.003689 CACAGGTCTTGTTGCGAGAATTT 59.996 43.478 0.00 0.00 38.16 1.82
2735 3478 2.549754 CACAGGTCTTGTTGCGAGAATT 59.450 45.455 0.00 0.00 38.16 2.17
2736 3479 2.146342 CACAGGTCTTGTTGCGAGAAT 58.854 47.619 0.00 0.00 38.16 2.40
2737 3480 1.134521 ACACAGGTCTTGTTGCGAGAA 60.135 47.619 0.00 0.00 38.16 2.87
2738 3481 0.464036 ACACAGGTCTTGTTGCGAGA 59.536 50.000 0.00 0.00 38.16 4.04
2739 3482 1.003545 CAACACAGGTCTTGTTGCGAG 60.004 52.381 2.50 0.00 45.36 5.03
2740 3483 1.013596 CAACACAGGTCTTGTTGCGA 58.986 50.000 2.50 0.00 45.36 5.10
2741 3484 3.532138 CAACACAGGTCTTGTTGCG 57.468 52.632 2.50 0.00 45.36 4.85
2753 3496 1.798223 GCGTCTTCATACTGCAACACA 59.202 47.619 0.00 0.00 0.00 3.72
2754 3497 1.201812 CGCGTCTTCATACTGCAACAC 60.202 52.381 0.00 0.00 0.00 3.32
2755 3498 1.067693 CGCGTCTTCATACTGCAACA 58.932 50.000 0.00 0.00 0.00 3.33
2756 3499 1.068474 ACGCGTCTTCATACTGCAAC 58.932 50.000 5.58 0.00 0.00 4.17
2757 3500 1.724623 GAACGCGTCTTCATACTGCAA 59.275 47.619 14.44 0.00 0.00 4.08
2758 3501 1.346365 GAACGCGTCTTCATACTGCA 58.654 50.000 14.44 0.00 0.00 4.41
2759 3502 0.294887 CGAACGCGTCTTCATACTGC 59.705 55.000 14.44 0.00 0.00 4.40
2771 3514 2.803670 ATCACACGGACGAACGCG 60.804 61.111 3.53 3.53 44.79 6.01
2772 3515 2.769617 CATCACACGGACGAACGC 59.230 61.111 0.00 0.00 37.37 4.84
2773 3516 2.769617 GCATCACACGGACGAACG 59.230 61.111 0.00 0.00 40.31 3.95
2774 3517 2.769617 CGCATCACACGGACGAAC 59.230 61.111 0.00 0.00 0.00 3.95
2781 3524 1.588404 GTCAGATTACCGCATCACACG 59.412 52.381 0.00 0.00 0.00 4.49
2782 3525 1.588404 CGTCAGATTACCGCATCACAC 59.412 52.381 0.00 0.00 0.00 3.82
2783 3526 1.470805 CCGTCAGATTACCGCATCACA 60.471 52.381 0.00 0.00 0.00 3.58
2784 3527 1.209128 CCGTCAGATTACCGCATCAC 58.791 55.000 0.00 0.00 0.00 3.06
2785 3528 0.529773 GCCGTCAGATTACCGCATCA 60.530 55.000 0.00 0.00 0.00 3.07
2786 3529 0.249489 AGCCGTCAGATTACCGCATC 60.249 55.000 0.00 0.00 0.00 3.91
2787 3530 0.249489 GAGCCGTCAGATTACCGCAT 60.249 55.000 0.00 0.00 0.00 4.73
2788 3531 1.141019 GAGCCGTCAGATTACCGCA 59.859 57.895 0.00 0.00 0.00 5.69
2789 3532 1.944676 CGAGCCGTCAGATTACCGC 60.945 63.158 0.00 0.00 0.00 5.68
2790 3533 1.944676 GCGAGCCGTCAGATTACCG 60.945 63.158 0.00 0.00 0.00 4.02
2791 3534 1.944676 CGCGAGCCGTCAGATTACC 60.945 63.158 0.00 0.00 0.00 2.85
2792 3535 1.944676 CCGCGAGCCGTCAGATTAC 60.945 63.158 8.23 0.00 34.38 1.89
2793 3536 2.411701 CCGCGAGCCGTCAGATTA 59.588 61.111 8.23 0.00 34.38 1.75
2808 3551 0.746563 TTAAAAGATCAGCCGGGCCG 60.747 55.000 21.46 21.46 0.00 6.13
2809 3552 1.470051 TTTAAAAGATCAGCCGGGCC 58.530 50.000 17.02 0.00 0.00 5.80
2810 3553 3.192633 TCTTTTTAAAAGATCAGCCGGGC 59.807 43.478 15.24 12.11 0.00 6.13
2811 3554 5.582689 ATCTTTTTAAAAGATCAGCCGGG 57.417 39.130 22.74 0.00 31.78 5.73
2819 3562 5.399013 CGCCGGTTGATCTTTTTAAAAGAT 58.601 37.500 26.87 26.87 39.53 2.40
2820 3563 4.320641 CCGCCGGTTGATCTTTTTAAAAGA 60.321 41.667 20.42 20.42 0.00 2.52
2821 3564 3.917985 CCGCCGGTTGATCTTTTTAAAAG 59.082 43.478 10.89 10.89 0.00 2.27
2822 3565 3.568853 TCCGCCGGTTGATCTTTTTAAAA 59.431 39.130 1.63 0.00 0.00 1.52
2823 3566 3.058085 GTCCGCCGGTTGATCTTTTTAAA 60.058 43.478 1.63 0.00 0.00 1.52
2824 3567 2.485038 GTCCGCCGGTTGATCTTTTTAA 59.515 45.455 1.63 0.00 0.00 1.52
2825 3568 2.078392 GTCCGCCGGTTGATCTTTTTA 58.922 47.619 1.63 0.00 0.00 1.52
2826 3569 0.879090 GTCCGCCGGTTGATCTTTTT 59.121 50.000 1.63 0.00 0.00 1.94
2827 3570 1.296056 CGTCCGCCGGTTGATCTTTT 61.296 55.000 1.63 0.00 0.00 2.27
2828 3571 1.740296 CGTCCGCCGGTTGATCTTT 60.740 57.895 1.63 0.00 0.00 2.52
2829 3572 2.125673 CGTCCGCCGGTTGATCTT 60.126 61.111 1.63 0.00 0.00 2.40
2830 3573 3.379445 ACGTCCGCCGGTTGATCT 61.379 61.111 1.63 0.00 42.24 2.75
2831 3574 2.546645 TACACGTCCGCCGGTTGATC 62.547 60.000 1.63 0.00 42.24 2.92
2832 3575 2.552585 CTACACGTCCGCCGGTTGAT 62.553 60.000 1.63 0.00 42.24 2.57
2833 3576 3.271706 CTACACGTCCGCCGGTTGA 62.272 63.158 1.63 0.00 42.24 3.18
2834 3577 2.807895 CTACACGTCCGCCGGTTG 60.808 66.667 1.63 1.55 42.24 3.77
2835 3578 4.729856 GCTACACGTCCGCCGGTT 62.730 66.667 1.63 0.00 42.24 4.44
2838 3581 4.710695 TGTGCTACACGTCCGCCG 62.711 66.667 0.00 0.00 44.03 6.46
2839 3582 3.110178 GTGTGCTACACGTCCGCC 61.110 66.667 4.12 0.00 39.53 6.13
2845 3588 8.618820 GCATACATTATGTGGTGTGCTACACG 62.619 46.154 8.26 0.00 45.20 4.49
2846 3589 5.504010 GCATACATTATGTGGTGTGCTACAC 60.504 44.000 8.26 9.96 45.20 2.90
2847 3590 4.574421 GCATACATTATGTGGTGTGCTACA 59.426 41.667 8.26 0.00 45.20 2.74
2848 3591 5.095691 GCATACATTATGTGGTGTGCTAC 57.904 43.478 8.26 0.00 45.20 3.58
2852 3595 4.202030 TGCATGCATACATTATGTGGTGTG 60.202 41.667 18.46 3.29 38.43 3.82
2853 3596 3.952967 TGCATGCATACATTATGTGGTGT 59.047 39.130 18.46 0.00 38.43 4.16
2854 3597 4.571372 TGCATGCATACATTATGTGGTG 57.429 40.909 18.46 7.97 38.43 4.17
2855 3598 6.888088 AGATATGCATGCATACATTATGTGGT 59.112 34.615 36.22 19.92 41.09 4.16
2856 3599 7.282450 AGAGATATGCATGCATACATTATGTGG 59.718 37.037 36.22 1.45 41.09 4.17
2857 3600 8.122952 CAGAGATATGCATGCATACATTATGTG 58.877 37.037 36.22 23.83 41.09 3.21
2858 3601 8.044908 TCAGAGATATGCATGCATACATTATGT 58.955 33.333 36.22 22.65 41.09 2.29
2859 3602 8.433421 TCAGAGATATGCATGCATACATTATG 57.567 34.615 36.22 28.52 41.09 1.90
2860 3603 8.890718 GTTCAGAGATATGCATGCATACATTAT 58.109 33.333 36.22 24.23 41.09 1.28
2861 3604 8.098912 AGTTCAGAGATATGCATGCATACATTA 58.901 33.333 36.22 20.76 41.09 1.90
2862 3605 6.940867 AGTTCAGAGATATGCATGCATACATT 59.059 34.615 36.22 25.36 41.09 2.71
2863 3606 6.371825 CAGTTCAGAGATATGCATGCATACAT 59.628 38.462 36.22 28.01 41.09 2.29
2864 3607 5.699458 CAGTTCAGAGATATGCATGCATACA 59.301 40.000 36.22 22.20 41.09 2.29
2865 3608 5.930569 TCAGTTCAGAGATATGCATGCATAC 59.069 40.000 36.22 28.25 41.09 2.39
2866 3609 6.105397 TCAGTTCAGAGATATGCATGCATA 57.895 37.500 35.71 35.71 42.28 3.14
2867 3610 4.969484 TCAGTTCAGAGATATGCATGCAT 58.031 39.130 33.92 33.92 40.19 3.96
2868 3611 4.411256 TCAGTTCAGAGATATGCATGCA 57.589 40.909 25.04 25.04 0.00 3.96
2869 3612 5.943706 ATTCAGTTCAGAGATATGCATGC 57.056 39.130 11.82 11.82 0.00 4.06
2909 3743 1.985159 TGCCACAAGATACTTCCACCT 59.015 47.619 0.00 0.00 0.00 4.00
2972 3808 7.886629 ATTGCCTGCTCTATGATCTTAAAAA 57.113 32.000 0.00 0.00 0.00 1.94
2973 3809 7.682741 GCAATTGCCTGCTCTATGATCTTAAAA 60.683 37.037 20.06 0.00 39.34 1.52
3083 3919 5.749588 TGCTTGTTTTGAAGTTGTCATGATG 59.250 36.000 0.00 0.00 35.70 3.07
3210 4046 4.697352 AGCAAACACAGTATCACTTCCATC 59.303 41.667 0.00 0.00 0.00 3.51
3265 4101 7.907563 CAGTTTCTTTCTCTCTGTTTTGAGAAC 59.092 37.037 5.11 0.00 45.44 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.