Multiple sequence alignment - TraesCS2A01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G278800 chr2A 100.000 3284 0 0 1 3284 461704218 461700935 0.000000e+00 6065.0
1 TraesCS2A01G278800 chr2D 95.215 1672 46 12 1638 3284 348190841 348192503 0.000000e+00 2614.0
2 TraesCS2A01G278800 chr2D 91.176 850 36 11 746 1570 348189800 348190635 0.000000e+00 1118.0
3 TraesCS2A01G278800 chr2D 93.182 44 3 0 1532 1575 75504935 75504978 7.610000e-07 65.8
4 TraesCS2A01G278800 chr2B 93.299 1373 52 10 1677 3014 413446709 413448076 0.000000e+00 1989.0
5 TraesCS2A01G278800 chr2B 91.164 928 32 9 748 1634 413445789 413446707 0.000000e+00 1214.0
6 TraesCS2A01G278800 chr2B 93.190 279 13 1 3012 3284 413448169 413448447 3.950000e-109 405.0
7 TraesCS2A01G278800 chr2B 87.500 208 24 2 3 209 89584475 89584269 4.230000e-59 239.0
8 TraesCS2A01G278800 chr2B 100.000 31 0 0 569 599 413444103 413444133 1.270000e-04 58.4
9 TraesCS2A01G278800 chr6D 82.353 357 53 9 212 562 332553135 332552783 5.330000e-78 302.0
10 TraesCS2A01G278800 chr6D 91.827 208 17 0 3 210 435588445 435588238 1.150000e-74 291.0
11 TraesCS2A01G278800 chr5B 81.694 366 55 11 203 561 696487821 696488181 8.910000e-76 294.0
12 TraesCS2A01G278800 chr5B 81.471 367 53 13 203 561 524537078 524536719 1.490000e-73 287.0
13 TraesCS2A01G278800 chr7B 81.622 370 49 17 203 561 651278976 651278615 4.150000e-74 289.0
14 TraesCS2A01G278800 chr7B 81.452 372 50 17 203 561 651306056 651305691 1.490000e-73 287.0
15 TraesCS2A01G278800 chr5A 81.644 365 50 11 202 561 44340122 44340474 1.490000e-73 287.0
16 TraesCS2A01G278800 chr4A 81.616 359 52 10 210 561 713927913 713927562 5.360000e-73 285.0
17 TraesCS2A01G278800 chr4A 97.368 38 1 0 1532 1569 522917014 522916977 7.610000e-07 65.8
18 TraesCS2A01G278800 chr6B 81.250 368 54 13 203 561 27592957 27593318 1.930000e-72 283.0
19 TraesCS2A01G278800 chr3A 91.748 206 14 3 3 207 23840813 23840610 1.930000e-72 283.0
20 TraesCS2A01G278800 chr3A 100.000 28 0 0 182 209 69625514 69625541 6.000000e-03 52.8
21 TraesCS2A01G278800 chr3B 81.132 371 53 13 203 563 52432237 52431874 6.940000e-72 281.0
22 TraesCS2A01G278800 chr7A 82.759 203 22 2 3 205 711921648 711921837 5.640000e-38 169.0
23 TraesCS2A01G278800 chr1B 77.848 158 34 1 52 209 327030964 327030808 2.700000e-16 97.1
24 TraesCS2A01G278800 chr1B 95.455 44 1 1 1532 1575 401618995 401618953 5.880000e-08 69.4
25 TraesCS2A01G278800 chrUn 92.308 52 2 1 1518 1569 97741879 97741830 4.550000e-09 73.1
26 TraesCS2A01G278800 chr1D 95.349 43 2 0 1533 1575 445785112 445785154 5.880000e-08 69.4
27 TraesCS2A01G278800 chr4D 97.368 38 1 0 1532 1569 70234566 70234529 7.610000e-07 65.8
28 TraesCS2A01G278800 chr4D 97.368 38 1 0 1532 1569 502014101 502014064 7.610000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G278800 chr2A 461700935 461704218 3283 True 6065.0 6065 100.00000 1 3284 1 chr2A.!!$R1 3283
1 TraesCS2A01G278800 chr2D 348189800 348192503 2703 False 1866.0 2614 93.19550 746 3284 2 chr2D.!!$F2 2538
2 TraesCS2A01G278800 chr2B 413444103 413448447 4344 False 916.6 1989 94.41325 569 3284 4 chr2B.!!$F1 2715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 390 0.034477 CGGCTAGGGTTTGGATTGGT 60.034 55.0 0.0 0.0 0.0 3.67 F
639 1867 0.179073 CTGTCCGTTAGCATCCCTGG 60.179 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 3760 0.392863 CATCAGTGGATCACGCCCAA 60.393 55.000 0.00 0.0 39.64 4.12 R
2353 4080 2.552315 CGTCCAGTAAGTGCAATTGGTT 59.448 45.455 10.14 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.431954 ATCCTGCTTGAAGTGGATGG 57.568 50.000 16.75 3.82 37.85 3.51
22 23 1.361204 TCCTGCTTGAAGTGGATGGA 58.639 50.000 5.27 0.00 0.00 3.41
23 24 1.280133 TCCTGCTTGAAGTGGATGGAG 59.720 52.381 5.27 0.00 0.00 3.86
24 25 1.681166 CCTGCTTGAAGTGGATGGAGG 60.681 57.143 0.00 0.00 0.00 4.30
25 26 1.004044 CTGCTTGAAGTGGATGGAGGT 59.996 52.381 0.00 0.00 0.00 3.85
26 27 1.425066 TGCTTGAAGTGGATGGAGGTT 59.575 47.619 0.00 0.00 0.00 3.50
27 28 1.815003 GCTTGAAGTGGATGGAGGTTG 59.185 52.381 0.00 0.00 0.00 3.77
28 29 2.553028 GCTTGAAGTGGATGGAGGTTGA 60.553 50.000 0.00 0.00 0.00 3.18
29 30 2.859165 TGAAGTGGATGGAGGTTGAC 57.141 50.000 0.00 0.00 0.00 3.18
30 31 2.338809 TGAAGTGGATGGAGGTTGACT 58.661 47.619 0.00 0.00 0.00 3.41
31 32 2.711009 TGAAGTGGATGGAGGTTGACTT 59.289 45.455 0.00 0.00 0.00 3.01
32 33 2.867109 AGTGGATGGAGGTTGACTTG 57.133 50.000 0.00 0.00 0.00 3.16
33 34 2.338809 AGTGGATGGAGGTTGACTTGA 58.661 47.619 0.00 0.00 0.00 3.02
34 35 2.915604 AGTGGATGGAGGTTGACTTGAT 59.084 45.455 0.00 0.00 0.00 2.57
35 36 3.012518 GTGGATGGAGGTTGACTTGATG 58.987 50.000 0.00 0.00 0.00 3.07
36 37 2.644299 TGGATGGAGGTTGACTTGATGT 59.356 45.455 0.00 0.00 0.00 3.06
37 38 3.843619 TGGATGGAGGTTGACTTGATGTA 59.156 43.478 0.00 0.00 0.00 2.29
38 39 4.080919 TGGATGGAGGTTGACTTGATGTAG 60.081 45.833 0.00 0.00 0.00 2.74
39 40 3.981071 TGGAGGTTGACTTGATGTAGG 57.019 47.619 0.00 0.00 0.00 3.18
40 41 3.516586 TGGAGGTTGACTTGATGTAGGA 58.483 45.455 0.00 0.00 0.00 2.94
41 42 4.104086 TGGAGGTTGACTTGATGTAGGAT 58.896 43.478 0.00 0.00 0.00 3.24
42 43 4.162320 TGGAGGTTGACTTGATGTAGGATC 59.838 45.833 0.00 0.00 0.00 3.36
43 44 4.443598 GGAGGTTGACTTGATGTAGGATCC 60.444 50.000 2.48 2.48 0.00 3.36
44 45 3.456277 AGGTTGACTTGATGTAGGATCCC 59.544 47.826 8.55 0.00 0.00 3.85
45 46 3.433740 GGTTGACTTGATGTAGGATCCCC 60.434 52.174 8.55 0.00 0.00 4.81
46 47 2.039418 TGACTTGATGTAGGATCCCCG 58.961 52.381 8.55 0.00 37.58 5.73
47 48 2.317040 GACTTGATGTAGGATCCCCGA 58.683 52.381 8.55 0.00 37.58 5.14
48 49 2.900546 GACTTGATGTAGGATCCCCGAT 59.099 50.000 8.55 0.00 37.58 4.18
49 50 2.900546 ACTTGATGTAGGATCCCCGATC 59.099 50.000 8.55 7.77 38.25 3.69
50 51 1.545841 TGATGTAGGATCCCCGATCG 58.454 55.000 8.55 8.51 39.72 3.69
51 52 0.818296 GATGTAGGATCCCCGATCGG 59.182 60.000 27.65 27.65 39.72 4.18
52 53 0.408309 ATGTAGGATCCCCGATCGGA 59.592 55.000 35.42 17.32 39.72 4.55
53 54 0.408309 TGTAGGATCCCCGATCGGAT 59.592 55.000 35.42 21.57 45.72 4.18
58 59 2.366469 ATCCCCGATCGGATCAAGG 58.634 57.895 35.42 25.57 38.28 3.61
59 60 1.831652 ATCCCCGATCGGATCAAGGC 61.832 60.000 35.42 0.00 38.28 4.35
60 61 2.356313 CCCGATCGGATCAAGGCG 60.356 66.667 35.42 12.07 37.50 5.52
61 62 2.728180 CCGATCGGATCAAGGCGA 59.272 61.111 30.62 0.00 37.50 5.54
62 63 1.661821 CCGATCGGATCAAGGCGAC 60.662 63.158 30.62 0.00 37.50 5.19
63 64 2.011349 CGATCGGATCAAGGCGACG 61.011 63.158 17.53 0.00 0.00 5.12
64 65 1.359117 GATCGGATCAAGGCGACGA 59.641 57.895 13.02 0.00 38.00 4.20
65 66 0.935366 GATCGGATCAAGGCGACGAC 60.935 60.000 13.02 0.00 36.32 4.34
66 67 2.663630 ATCGGATCAAGGCGACGACG 62.664 60.000 2.12 2.12 42.93 5.12
67 68 2.582498 GGATCAAGGCGACGACGG 60.582 66.667 9.67 0.00 40.15 4.79
77 78 4.865761 GACGACGGCCAGCGCATA 62.866 66.667 11.47 0.00 36.38 3.14
83 84 4.830765 GGCCAGCGCATACCGACA 62.831 66.667 11.47 0.00 40.02 4.35
84 85 2.588877 GCCAGCGCATACCGACAT 60.589 61.111 11.47 0.00 40.02 3.06
85 86 2.885676 GCCAGCGCATACCGACATG 61.886 63.158 11.47 0.00 40.02 3.21
86 87 2.628106 CAGCGCATACCGACATGC 59.372 61.111 11.47 10.20 46.38 4.06
137 138 3.188786 GTCGCCTAGCACGCAAGG 61.189 66.667 0.00 0.00 46.39 3.61
141 142 2.046892 CCTAGCACGCAAGGCTGT 60.047 61.111 4.19 0.00 42.50 4.40
142 143 2.103042 CCTAGCACGCAAGGCTGTC 61.103 63.158 4.19 0.00 42.50 3.51
143 144 2.432456 TAGCACGCAAGGCTGTCG 60.432 61.111 7.05 7.05 42.50 4.35
144 145 3.220999 TAGCACGCAAGGCTGTCGT 62.221 57.895 8.25 8.25 42.50 4.34
145 146 4.374702 GCACGCAAGGCTGTCGTG 62.375 66.667 26.98 26.98 46.52 4.35
146 147 2.967076 CACGCAAGGCTGTCGTGT 60.967 61.111 24.56 11.52 42.71 4.49
147 148 2.661866 ACGCAAGGCTGTCGTGTC 60.662 61.111 12.51 0.00 46.39 3.67
148 149 3.767230 CGCAAGGCTGTCGTGTCG 61.767 66.667 0.00 0.00 0.00 4.35
149 150 3.414700 GCAAGGCTGTCGTGTCGG 61.415 66.667 0.00 0.00 0.00 4.79
150 151 2.338620 CAAGGCTGTCGTGTCGGA 59.661 61.111 0.00 0.00 0.00 4.55
151 152 1.734477 CAAGGCTGTCGTGTCGGAG 60.734 63.158 0.00 0.00 0.00 4.63
152 153 1.901948 AAGGCTGTCGTGTCGGAGA 60.902 57.895 0.00 0.00 0.00 3.71
153 154 1.461091 AAGGCTGTCGTGTCGGAGAA 61.461 55.000 0.00 0.00 39.69 2.87
154 155 1.444553 GGCTGTCGTGTCGGAGAAG 60.445 63.158 0.00 0.00 39.69 2.85
155 156 1.579932 GCTGTCGTGTCGGAGAAGA 59.420 57.895 0.00 0.00 39.69 2.87
156 157 0.171455 GCTGTCGTGTCGGAGAAGAT 59.829 55.000 0.00 0.00 39.69 2.40
157 158 1.901538 CTGTCGTGTCGGAGAAGATG 58.098 55.000 0.00 0.00 39.69 2.90
158 159 0.109272 TGTCGTGTCGGAGAAGATGC 60.109 55.000 0.00 0.00 39.69 3.91
159 160 0.171455 GTCGTGTCGGAGAAGATGCT 59.829 55.000 0.00 0.00 39.69 3.79
160 161 1.400846 GTCGTGTCGGAGAAGATGCTA 59.599 52.381 0.00 0.00 39.69 3.49
161 162 1.671328 TCGTGTCGGAGAAGATGCTAG 59.329 52.381 0.00 0.00 39.69 3.42
162 163 1.402259 CGTGTCGGAGAAGATGCTAGT 59.598 52.381 0.00 0.00 39.69 2.57
163 164 2.792890 CGTGTCGGAGAAGATGCTAGTG 60.793 54.545 0.00 0.00 39.69 2.74
164 165 2.164624 GTGTCGGAGAAGATGCTAGTGT 59.835 50.000 0.00 0.00 39.69 3.55
165 166 2.164422 TGTCGGAGAAGATGCTAGTGTG 59.836 50.000 0.00 0.00 39.69 3.82
166 167 1.751351 TCGGAGAAGATGCTAGTGTGG 59.249 52.381 0.00 0.00 0.00 4.17
167 168 1.478510 CGGAGAAGATGCTAGTGTGGT 59.521 52.381 0.00 0.00 0.00 4.16
168 169 2.480416 CGGAGAAGATGCTAGTGTGGTC 60.480 54.545 0.00 0.00 0.00 4.02
169 170 2.480416 GGAGAAGATGCTAGTGTGGTCG 60.480 54.545 0.00 0.00 0.00 4.79
170 171 2.423892 GAGAAGATGCTAGTGTGGTCGA 59.576 50.000 0.00 0.00 0.00 4.20
171 172 3.027412 AGAAGATGCTAGTGTGGTCGAT 58.973 45.455 0.00 0.00 0.00 3.59
172 173 2.879002 AGATGCTAGTGTGGTCGATG 57.121 50.000 0.00 0.00 0.00 3.84
173 174 1.202463 AGATGCTAGTGTGGTCGATGC 60.202 52.381 0.00 0.00 0.00 3.91
174 175 0.826715 ATGCTAGTGTGGTCGATGCT 59.173 50.000 0.00 0.00 0.00 3.79
175 176 0.108662 TGCTAGTGTGGTCGATGCTG 60.109 55.000 0.00 0.00 0.00 4.41
176 177 0.173481 GCTAGTGTGGTCGATGCTGA 59.827 55.000 0.00 0.00 0.00 4.26
177 178 1.404181 GCTAGTGTGGTCGATGCTGAA 60.404 52.381 0.00 0.00 0.00 3.02
178 179 2.534298 CTAGTGTGGTCGATGCTGAAG 58.466 52.381 0.00 0.00 0.00 3.02
179 180 0.681733 AGTGTGGTCGATGCTGAAGT 59.318 50.000 0.00 0.00 0.00 3.01
180 181 1.071605 GTGTGGTCGATGCTGAAGTC 58.928 55.000 0.00 0.00 0.00 3.01
181 182 0.388520 TGTGGTCGATGCTGAAGTCG 60.389 55.000 0.00 0.00 39.11 4.18
182 183 1.078759 GTGGTCGATGCTGAAGTCGG 61.079 60.000 0.00 0.00 38.34 4.79
183 184 1.248101 TGGTCGATGCTGAAGTCGGA 61.248 55.000 0.00 0.00 38.34 4.55
184 185 0.526524 GGTCGATGCTGAAGTCGGAG 60.527 60.000 0.00 0.00 38.34 4.63
185 186 0.171455 GTCGATGCTGAAGTCGGAGT 59.829 55.000 0.00 0.00 38.34 3.85
186 187 0.171231 TCGATGCTGAAGTCGGAGTG 59.829 55.000 0.00 0.00 38.34 3.51
187 188 0.803768 CGATGCTGAAGTCGGAGTGG 60.804 60.000 0.00 0.00 34.39 4.00
188 189 0.532573 GATGCTGAAGTCGGAGTGGA 59.467 55.000 0.00 0.00 0.00 4.02
189 190 0.534412 ATGCTGAAGTCGGAGTGGAG 59.466 55.000 0.00 0.00 0.00 3.86
190 191 1.216710 GCTGAAGTCGGAGTGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
191 192 1.216710 CTGAAGTCGGAGTGGAGGC 59.783 63.158 0.00 0.00 0.00 4.70
192 193 2.182030 GAAGTCGGAGTGGAGGCG 59.818 66.667 0.00 0.00 0.00 5.52
193 194 3.991536 GAAGTCGGAGTGGAGGCGC 62.992 68.421 0.00 0.00 0.00 6.53
212 213 2.809601 CGAGGGTCGACGGCAAAG 60.810 66.667 9.92 0.00 43.74 2.77
213 214 2.654877 GAGGGTCGACGGCAAAGA 59.345 61.111 9.92 0.00 0.00 2.52
214 215 1.446272 GAGGGTCGACGGCAAAGAG 60.446 63.158 9.92 0.00 0.00 2.85
215 216 1.874345 GAGGGTCGACGGCAAAGAGA 61.874 60.000 9.92 0.00 0.00 3.10
216 217 1.446272 GGGTCGACGGCAAAGAGAG 60.446 63.158 9.92 0.00 0.00 3.20
217 218 1.585006 GGTCGACGGCAAAGAGAGA 59.415 57.895 9.92 0.00 0.00 3.10
218 219 0.038526 GGTCGACGGCAAAGAGAGAA 60.039 55.000 9.92 0.00 0.00 2.87
219 220 1.604693 GGTCGACGGCAAAGAGAGAAA 60.605 52.381 9.92 0.00 0.00 2.52
220 221 2.132762 GTCGACGGCAAAGAGAGAAAA 58.867 47.619 0.00 0.00 0.00 2.29
221 222 2.096860 GTCGACGGCAAAGAGAGAAAAC 60.097 50.000 0.00 0.00 0.00 2.43
222 223 1.194772 CGACGGCAAAGAGAGAAAACC 59.805 52.381 0.00 0.00 0.00 3.27
223 224 1.535896 GACGGCAAAGAGAGAAAACCC 59.464 52.381 0.00 0.00 0.00 4.11
224 225 0.517316 CGGCAAAGAGAGAAAACCCG 59.483 55.000 0.00 0.00 0.00 5.28
225 226 0.881796 GGCAAAGAGAGAAAACCCGG 59.118 55.000 0.00 0.00 0.00 5.73
226 227 1.544759 GGCAAAGAGAGAAAACCCGGA 60.545 52.381 0.73 0.00 0.00 5.14
227 228 2.437413 GCAAAGAGAGAAAACCCGGAT 58.563 47.619 0.73 0.00 0.00 4.18
228 229 2.820197 GCAAAGAGAGAAAACCCGGATT 59.180 45.455 0.73 0.00 0.00 3.01
229 230 4.007659 GCAAAGAGAGAAAACCCGGATTA 58.992 43.478 0.73 0.00 0.00 1.75
230 231 4.457949 GCAAAGAGAGAAAACCCGGATTAA 59.542 41.667 0.73 0.00 0.00 1.40
231 232 5.392057 GCAAAGAGAGAAAACCCGGATTAAG 60.392 44.000 0.73 0.00 0.00 1.85
232 233 3.875125 AGAGAGAAAACCCGGATTAAGC 58.125 45.455 0.73 0.00 0.00 3.09
233 234 3.263425 AGAGAGAAAACCCGGATTAAGCA 59.737 43.478 0.73 0.00 0.00 3.91
234 235 4.007659 GAGAGAAAACCCGGATTAAGCAA 58.992 43.478 0.73 0.00 0.00 3.91
235 236 4.600062 AGAGAAAACCCGGATTAAGCAAT 58.400 39.130 0.73 0.00 0.00 3.56
236 237 4.640647 AGAGAAAACCCGGATTAAGCAATC 59.359 41.667 0.73 0.00 39.98 2.67
237 238 4.340617 AGAAAACCCGGATTAAGCAATCA 58.659 39.130 0.73 0.00 42.10 2.57
238 239 4.399303 AGAAAACCCGGATTAAGCAATCAG 59.601 41.667 0.73 0.00 42.10 2.90
241 242 2.638480 CCGGATTAAGCAATCAGGGA 57.362 50.000 0.00 0.00 46.77 4.20
242 243 2.930950 CCGGATTAAGCAATCAGGGAA 58.069 47.619 0.00 0.00 46.77 3.97
243 244 3.287222 CCGGATTAAGCAATCAGGGAAA 58.713 45.455 0.00 0.00 46.77 3.13
244 245 3.699038 CCGGATTAAGCAATCAGGGAAAA 59.301 43.478 0.00 0.00 46.77 2.29
245 246 4.202050 CCGGATTAAGCAATCAGGGAAAAG 60.202 45.833 0.00 0.00 46.77 2.27
246 247 4.640201 CGGATTAAGCAATCAGGGAAAAGA 59.360 41.667 0.00 0.00 42.10 2.52
247 248 5.449177 CGGATTAAGCAATCAGGGAAAAGAC 60.449 44.000 0.00 0.00 42.10 3.01
248 249 5.654209 GGATTAAGCAATCAGGGAAAAGACT 59.346 40.000 0.00 0.00 42.10 3.24
249 250 6.183360 GGATTAAGCAATCAGGGAAAAGACTC 60.183 42.308 0.00 0.00 42.10 3.36
250 251 4.379302 AAGCAATCAGGGAAAAGACTCT 57.621 40.909 0.00 0.00 0.00 3.24
251 252 3.683802 AGCAATCAGGGAAAAGACTCTG 58.316 45.455 0.00 0.00 39.49 3.35
252 253 3.073650 AGCAATCAGGGAAAAGACTCTGT 59.926 43.478 0.00 0.00 39.20 3.41
253 254 4.287067 AGCAATCAGGGAAAAGACTCTGTA 59.713 41.667 0.00 0.00 39.20 2.74
254 255 4.633565 GCAATCAGGGAAAAGACTCTGTAG 59.366 45.833 0.00 0.00 39.20 2.74
255 256 5.181748 CAATCAGGGAAAAGACTCTGTAGG 58.818 45.833 0.00 0.00 39.20 3.18
256 257 4.127918 TCAGGGAAAAGACTCTGTAGGA 57.872 45.455 0.00 0.00 39.20 2.94
257 258 3.833070 TCAGGGAAAAGACTCTGTAGGAC 59.167 47.826 0.00 0.00 39.20 3.85
258 259 3.578716 CAGGGAAAAGACTCTGTAGGACA 59.421 47.826 0.00 0.00 34.08 4.02
259 260 4.040461 CAGGGAAAAGACTCTGTAGGACAA 59.960 45.833 0.00 0.00 34.08 3.18
260 261 4.040584 AGGGAAAAGACTCTGTAGGACAAC 59.959 45.833 0.00 0.00 0.00 3.32
261 262 4.316645 GGAAAAGACTCTGTAGGACAACC 58.683 47.826 0.00 0.00 0.00 3.77
262 263 3.662247 AAAGACTCTGTAGGACAACCG 57.338 47.619 0.00 0.00 41.83 4.44
263 264 1.546961 AGACTCTGTAGGACAACCGG 58.453 55.000 0.00 0.00 41.83 5.28
264 265 0.108756 GACTCTGTAGGACAACCGGC 60.109 60.000 0.00 0.00 41.83 6.13
265 266 1.218316 CTCTGTAGGACAACCGGCC 59.782 63.158 0.00 0.00 41.83 6.13
266 267 1.534476 TCTGTAGGACAACCGGCCA 60.534 57.895 0.00 0.00 41.83 5.36
267 268 1.122632 TCTGTAGGACAACCGGCCAA 61.123 55.000 0.00 0.00 41.83 4.52
268 269 0.953960 CTGTAGGACAACCGGCCAAC 60.954 60.000 0.00 0.00 41.83 3.77
269 270 1.071814 GTAGGACAACCGGCCAACA 59.928 57.895 0.00 0.00 41.83 3.33
270 271 1.071814 TAGGACAACCGGCCAACAC 59.928 57.895 0.00 0.00 41.83 3.32
271 272 2.718747 TAGGACAACCGGCCAACACG 62.719 60.000 0.00 0.00 41.83 4.49
272 273 2.589442 GACAACCGGCCAACACGA 60.589 61.111 0.00 0.00 0.00 4.35
273 274 1.964373 GACAACCGGCCAACACGAT 60.964 57.895 0.00 0.00 0.00 3.73
274 275 1.512156 GACAACCGGCCAACACGATT 61.512 55.000 0.00 0.00 0.00 3.34
275 276 1.081509 CAACCGGCCAACACGATTG 60.082 57.895 0.00 0.00 0.00 2.67
276 277 2.265182 AACCGGCCAACACGATTGG 61.265 57.895 15.99 15.99 42.37 3.16
281 282 2.867472 CCAACACGATTGGCGGAC 59.133 61.111 9.70 0.00 46.49 4.79
282 283 2.474266 CAACACGATTGGCGGACG 59.526 61.111 0.00 0.00 46.49 4.79
283 284 2.024868 CAACACGATTGGCGGACGA 61.025 57.895 0.00 0.00 46.49 4.20
284 285 1.301087 AACACGATTGGCGGACGAA 60.301 52.632 0.00 0.00 46.49 3.85
285 286 1.562575 AACACGATTGGCGGACGAAC 61.563 55.000 0.00 0.00 46.49 3.95
286 287 2.433664 ACGATTGGCGGACGAACC 60.434 61.111 0.00 0.00 46.49 3.62
287 288 3.192922 CGATTGGCGGACGAACCC 61.193 66.667 0.00 0.00 36.03 4.11
288 289 2.267961 GATTGGCGGACGAACCCT 59.732 61.111 0.00 0.00 34.64 4.34
289 290 1.518774 GATTGGCGGACGAACCCTA 59.481 57.895 0.00 0.00 34.64 3.53
290 291 0.529992 GATTGGCGGACGAACCCTAG 60.530 60.000 0.00 0.00 34.64 3.02
291 292 1.968050 ATTGGCGGACGAACCCTAGG 61.968 60.000 0.06 0.06 34.64 3.02
292 293 3.073101 GGCGGACGAACCCTAGGT 61.073 66.667 8.29 0.00 37.65 3.08
293 294 1.754234 GGCGGACGAACCCTAGGTA 60.754 63.158 8.29 0.00 33.12 3.08
294 295 1.435105 GCGGACGAACCCTAGGTAC 59.565 63.158 8.29 0.00 33.12 3.34
295 296 1.723870 CGGACGAACCCTAGGTACG 59.276 63.158 8.29 12.32 33.12 3.67
296 297 1.718757 CGGACGAACCCTAGGTACGG 61.719 65.000 18.63 3.39 33.12 4.02
298 299 2.009424 GACGAACCCTAGGTACGGGC 62.009 65.000 18.63 9.95 46.04 6.13
299 300 2.810403 GAACCCTAGGTACGGGCG 59.190 66.667 8.29 0.00 46.04 6.13
300 301 2.761213 AACCCTAGGTACGGGCGG 60.761 66.667 8.29 0.00 46.04 6.13
334 335 4.530857 GGTCATGGAGGCCGACCG 62.531 72.222 10.54 1.66 39.86 4.79
384 385 4.090588 CGGCGGCTAGGGTTTGGA 62.091 66.667 7.61 0.00 0.00 3.53
385 386 2.595655 GGCGGCTAGGGTTTGGAT 59.404 61.111 0.00 0.00 0.00 3.41
386 387 1.076995 GGCGGCTAGGGTTTGGATT 60.077 57.895 0.00 0.00 0.00 3.01
387 388 1.384222 GGCGGCTAGGGTTTGGATTG 61.384 60.000 0.00 0.00 0.00 2.67
388 389 1.384222 GCGGCTAGGGTTTGGATTGG 61.384 60.000 0.00 0.00 0.00 3.16
389 390 0.034477 CGGCTAGGGTTTGGATTGGT 60.034 55.000 0.00 0.00 0.00 3.67
390 391 1.615919 CGGCTAGGGTTTGGATTGGTT 60.616 52.381 0.00 0.00 0.00 3.67
391 392 2.356330 CGGCTAGGGTTTGGATTGGTTA 60.356 50.000 0.00 0.00 0.00 2.85
392 393 3.703921 GGCTAGGGTTTGGATTGGTTAA 58.296 45.455 0.00 0.00 0.00 2.01
393 394 4.090819 GGCTAGGGTTTGGATTGGTTAAA 58.909 43.478 0.00 0.00 0.00 1.52
394 395 4.081862 GGCTAGGGTTTGGATTGGTTAAAC 60.082 45.833 0.00 0.00 34.45 2.01
395 396 4.770531 GCTAGGGTTTGGATTGGTTAAACT 59.229 41.667 0.00 0.00 35.30 2.66
396 397 5.336451 GCTAGGGTTTGGATTGGTTAAACTG 60.336 44.000 0.00 0.00 35.30 3.16
397 398 4.810345 AGGGTTTGGATTGGTTAAACTGA 58.190 39.130 0.00 0.00 35.30 3.41
398 399 5.402630 AGGGTTTGGATTGGTTAAACTGAT 58.597 37.500 0.00 0.00 35.30 2.90
399 400 6.557568 AGGGTTTGGATTGGTTAAACTGATA 58.442 36.000 0.00 0.00 35.30 2.15
400 401 6.436218 AGGGTTTGGATTGGTTAAACTGATAC 59.564 38.462 0.00 0.00 35.30 2.24
401 402 6.350696 GGGTTTGGATTGGTTAAACTGATACC 60.351 42.308 0.00 0.00 35.30 2.73
402 403 6.209788 GGTTTGGATTGGTTAAACTGATACCA 59.790 38.462 0.00 0.00 40.06 3.25
403 404 7.093509 GGTTTGGATTGGTTAAACTGATACCAT 60.094 37.037 0.00 0.00 41.31 3.55
404 405 7.403312 TTGGATTGGTTAAACTGATACCATG 57.597 36.000 0.00 0.00 41.31 3.66
405 406 6.489603 TGGATTGGTTAAACTGATACCATGT 58.510 36.000 0.00 0.00 41.31 3.21
406 407 6.951198 TGGATTGGTTAAACTGATACCATGTT 59.049 34.615 0.00 0.00 41.31 2.71
407 408 8.110271 TGGATTGGTTAAACTGATACCATGTTA 58.890 33.333 0.00 0.00 41.31 2.41
408 409 8.962679 GGATTGGTTAAACTGATACCATGTTAA 58.037 33.333 0.00 0.00 41.31 2.01
412 413 8.798402 TGGTTAAACTGATACCATGTTAAAAGG 58.202 33.333 0.00 0.00 37.04 3.11
413 414 8.248253 GGTTAAACTGATACCATGTTAAAAGGG 58.752 37.037 0.00 0.00 32.12 3.95
414 415 9.016438 GTTAAACTGATACCATGTTAAAAGGGA 57.984 33.333 2.64 0.00 0.00 4.20
415 416 7.703058 AAACTGATACCATGTTAAAAGGGAG 57.297 36.000 2.64 0.00 0.00 4.30
416 417 6.636454 ACTGATACCATGTTAAAAGGGAGA 57.364 37.500 2.64 0.00 0.00 3.71
417 418 6.653989 ACTGATACCATGTTAAAAGGGAGAG 58.346 40.000 2.64 0.00 0.00 3.20
418 419 6.443849 ACTGATACCATGTTAAAAGGGAGAGA 59.556 38.462 2.64 0.00 0.00 3.10
419 420 6.889198 TGATACCATGTTAAAAGGGAGAGAG 58.111 40.000 2.64 0.00 0.00 3.20
420 421 6.443849 TGATACCATGTTAAAAGGGAGAGAGT 59.556 38.462 2.64 0.00 0.00 3.24
421 422 4.911390 ACCATGTTAAAAGGGAGAGAGTG 58.089 43.478 2.64 0.00 0.00 3.51
422 423 4.263506 ACCATGTTAAAAGGGAGAGAGTGG 60.264 45.833 2.64 0.00 0.00 4.00
423 424 4.265073 CATGTTAAAAGGGAGAGAGTGGG 58.735 47.826 0.00 0.00 0.00 4.61
424 425 3.323775 TGTTAAAAGGGAGAGAGTGGGT 58.676 45.455 0.00 0.00 0.00 4.51
425 426 3.720002 TGTTAAAAGGGAGAGAGTGGGTT 59.280 43.478 0.00 0.00 0.00 4.11
426 427 2.959465 AAAAGGGAGAGAGTGGGTTG 57.041 50.000 0.00 0.00 0.00 3.77
427 428 2.118403 AAAGGGAGAGAGTGGGTTGA 57.882 50.000 0.00 0.00 0.00 3.18
428 429 2.350863 AAGGGAGAGAGTGGGTTGAT 57.649 50.000 0.00 0.00 0.00 2.57
429 430 1.577736 AGGGAGAGAGTGGGTTGATG 58.422 55.000 0.00 0.00 0.00 3.07
430 431 1.079490 AGGGAGAGAGTGGGTTGATGA 59.921 52.381 0.00 0.00 0.00 2.92
431 432 2.122768 GGGAGAGAGTGGGTTGATGAT 58.877 52.381 0.00 0.00 0.00 2.45
432 433 3.051803 AGGGAGAGAGTGGGTTGATGATA 60.052 47.826 0.00 0.00 0.00 2.15
433 434 3.906846 GGGAGAGAGTGGGTTGATGATAT 59.093 47.826 0.00 0.00 0.00 1.63
434 435 4.349342 GGGAGAGAGTGGGTTGATGATATT 59.651 45.833 0.00 0.00 0.00 1.28
435 436 5.303971 GGAGAGAGTGGGTTGATGATATTG 58.696 45.833 0.00 0.00 0.00 1.90
436 437 5.163258 GGAGAGAGTGGGTTGATGATATTGT 60.163 44.000 0.00 0.00 0.00 2.71
437 438 6.319048 AGAGAGTGGGTTGATGATATTGTT 57.681 37.500 0.00 0.00 0.00 2.83
438 439 7.419057 GGAGAGAGTGGGTTGATGATATTGTTA 60.419 40.741 0.00 0.00 0.00 2.41
439 440 8.038862 AGAGAGTGGGTTGATGATATTGTTAT 57.961 34.615 0.00 0.00 0.00 1.89
440 441 8.497745 AGAGAGTGGGTTGATGATATTGTTATT 58.502 33.333 0.00 0.00 0.00 1.40
441 442 8.455903 AGAGTGGGTTGATGATATTGTTATTG 57.544 34.615 0.00 0.00 0.00 1.90
442 443 8.055181 AGAGTGGGTTGATGATATTGTTATTGT 58.945 33.333 0.00 0.00 0.00 2.71
443 444 9.337396 GAGTGGGTTGATGATATTGTTATTGTA 57.663 33.333 0.00 0.00 0.00 2.41
444 445 9.866655 AGTGGGTTGATGATATTGTTATTGTAT 57.133 29.630 0.00 0.00 0.00 2.29
447 448 9.410556 GGGTTGATGATATTGTTATTGTATTGC 57.589 33.333 0.00 0.00 0.00 3.56
457 458 7.977789 TTGTTATTGTATTGCTTGAGTCTCA 57.022 32.000 0.00 0.00 0.00 3.27
458 459 8.565896 TTGTTATTGTATTGCTTGAGTCTCAT 57.434 30.769 2.68 0.00 0.00 2.90
459 460 7.977904 TGTTATTGTATTGCTTGAGTCTCATG 58.022 34.615 2.68 7.37 0.00 3.07
460 461 7.823799 TGTTATTGTATTGCTTGAGTCTCATGA 59.176 33.333 17.62 0.00 0.00 3.07
461 462 6.922247 ATTGTATTGCTTGAGTCTCATGAG 57.078 37.500 17.07 17.07 0.00 2.90
462 463 4.186926 TGTATTGCTTGAGTCTCATGAGC 58.813 43.478 18.36 16.53 32.40 4.26
463 464 2.845363 TTGCTTGAGTCTCATGAGCA 57.155 45.000 20.53 20.53 38.16 4.26
464 465 2.090400 TGCTTGAGTCTCATGAGCAC 57.910 50.000 20.53 15.77 35.87 4.40
465 466 1.345415 TGCTTGAGTCTCATGAGCACA 59.655 47.619 20.53 14.08 35.87 4.57
466 467 2.027469 TGCTTGAGTCTCATGAGCACAT 60.027 45.455 20.53 3.28 35.87 3.21
467 468 3.196254 TGCTTGAGTCTCATGAGCACATA 59.804 43.478 20.53 7.42 35.87 2.29
468 469 4.141779 TGCTTGAGTCTCATGAGCACATAT 60.142 41.667 20.53 2.18 35.87 1.78
469 470 5.069516 TGCTTGAGTCTCATGAGCACATATA 59.930 40.000 20.53 2.54 35.87 0.86
470 471 6.164876 GCTTGAGTCTCATGAGCACATATAT 58.835 40.000 18.36 1.51 32.14 0.86
471 472 7.039504 TGCTTGAGTCTCATGAGCACATATATA 60.040 37.037 20.53 1.34 35.87 0.86
472 473 7.980662 GCTTGAGTCTCATGAGCACATATATAT 59.019 37.037 18.36 0.22 32.14 0.86
566 567 8.803201 TCTAATCAATATACTCAACAAGCTCG 57.197 34.615 0.00 0.00 0.00 5.03
567 568 8.630037 TCTAATCAATATACTCAACAAGCTCGA 58.370 33.333 0.00 0.00 0.00 4.04
601 602 4.177165 CAAGCATTGCAACATACTTGGA 57.823 40.909 11.91 0.00 40.39 3.53
602 603 4.558178 CAAGCATTGCAACATACTTGGAA 58.442 39.130 11.91 0.00 40.39 3.53
607 1835 3.980646 TGCAACATACTTGGAACACAC 57.019 42.857 0.00 0.00 39.29 3.82
614 1842 2.348411 ACTTGGAACACACTCCCTTG 57.652 50.000 0.00 0.00 39.29 3.61
630 1858 2.069273 CCTTGCAGAACTGTCCGTTAG 58.931 52.381 3.77 0.00 35.56 2.34
631 1859 1.461127 CTTGCAGAACTGTCCGTTAGC 59.539 52.381 3.77 0.00 35.56 3.09
632 1860 0.391228 TGCAGAACTGTCCGTTAGCA 59.609 50.000 3.77 3.60 41.52 3.49
633 1861 1.001974 TGCAGAACTGTCCGTTAGCAT 59.998 47.619 3.77 0.00 39.98 3.79
634 1862 1.661112 GCAGAACTGTCCGTTAGCATC 59.339 52.381 3.77 0.00 36.96 3.91
639 1867 0.179073 CTGTCCGTTAGCATCCCTGG 60.179 60.000 0.00 0.00 0.00 4.45
645 1873 3.042733 TTAGCATCCCTGGCCACCG 62.043 63.158 0.00 0.00 0.00 4.94
667 1895 3.242969 GCTCATGTGCCAGTACAATCATG 60.243 47.826 8.59 3.32 33.69 3.07
668 1896 4.193865 CTCATGTGCCAGTACAATCATGA 58.806 43.478 0.00 0.00 39.10 3.07
681 1909 1.937278 ATCATGAGAGCGCAGTTGAG 58.063 50.000 11.47 0.00 0.00 3.02
685 1913 1.080230 GAGAGCGCAGTTGAGAGCA 60.080 57.895 11.47 0.00 0.00 4.26
698 1926 4.508461 TTGAGAGCACCATCAACATTTG 57.492 40.909 0.00 0.00 30.67 2.32
708 1936 4.163078 ACCATCAACATTTGTTTTCACCCA 59.837 37.500 0.00 0.00 35.83 4.51
737 1965 2.047560 GCGGACGCCAAACTACCT 60.048 61.111 5.20 0.00 34.56 3.08
787 2299 1.949525 GATGCCCTAATCACGCACATT 59.050 47.619 0.00 0.00 34.87 2.71
817 2329 6.949449 CCGCTAAGGAAAAGAATAATCAGAC 58.051 40.000 0.00 0.00 45.00 3.51
835 2348 1.443702 CGCGAATGACCACGTCAGA 60.444 57.895 0.00 0.00 46.04 3.27
946 2476 3.261981 TCATTCGCCTTTCCTTCCTAC 57.738 47.619 0.00 0.00 0.00 3.18
981 2511 2.228103 CCTTTTCCTAAACCAACGCCTC 59.772 50.000 0.00 0.00 0.00 4.70
1016 2546 0.889186 GCCATGGACAGGACAAACGT 60.889 55.000 18.40 0.00 0.00 3.99
1098 2628 0.608308 TCGTCAAGAAGCTCCTCGGA 60.608 55.000 0.00 0.00 0.00 4.55
1345 2875 2.360165 TCTTAATTCGGGTCTACTCCGC 59.640 50.000 0.00 0.00 46.43 5.54
1406 2955 7.062839 GCTTATGAAATAGGAGTAGATTGCTCG 59.937 40.741 0.00 0.00 34.00 5.03
1416 2965 6.024049 GGAGTAGATTGCTCGAATTTGTTTG 58.976 40.000 0.00 0.00 34.00 2.93
1496 3045 4.973168 TCAGGACAGAATACAAGCACTTT 58.027 39.130 0.00 0.00 0.00 2.66
1508 3057 4.882671 CAAGCACTTTGTGTCAGTAACT 57.117 40.909 0.00 0.00 35.75 2.24
1509 3058 4.837567 CAAGCACTTTGTGTCAGTAACTC 58.162 43.478 0.00 0.00 35.75 3.01
1510 3059 4.137116 AGCACTTTGTGTCAGTAACTCA 57.863 40.909 0.00 0.00 35.75 3.41
1511 3060 4.122776 AGCACTTTGTGTCAGTAACTCAG 58.877 43.478 0.00 0.00 35.75 3.35
1520 3069 7.939784 TGTGTCAGTAACTCAGTATCATACT 57.060 36.000 0.00 0.00 40.28 2.12
1570 3119 9.838339 AATGTCTTATATTTAGGAACAGAGGTG 57.162 33.333 0.00 0.00 0.00 4.00
1604 3319 5.542779 AGCTTAATTAGGCCGATAAGACAG 58.457 41.667 15.33 3.65 0.00 3.51
1634 3349 3.984508 TGAGTAATAGTACGAGCTGCC 57.015 47.619 0.00 0.00 35.20 4.85
1635 3350 3.284617 TGAGTAATAGTACGAGCTGCCA 58.715 45.455 0.00 0.00 35.20 4.92
1636 3351 3.066342 TGAGTAATAGTACGAGCTGCCAC 59.934 47.826 0.00 0.00 35.20 5.01
1637 3352 3.021695 AGTAATAGTACGAGCTGCCACA 58.978 45.455 0.00 0.00 35.20 4.17
1638 3353 3.446161 AGTAATAGTACGAGCTGCCACAA 59.554 43.478 0.00 0.00 35.20 3.33
1735 3450 2.729194 ACATTTGTAATGCCCGCCTTA 58.271 42.857 0.00 0.00 0.00 2.69
1744 3459 2.335316 TGCCCGCCTTAATAATTCGT 57.665 45.000 0.00 0.00 0.00 3.85
1761 3476 6.834168 AATTCGTGATTTATCCCTTGTTGT 57.166 33.333 0.00 0.00 0.00 3.32
1775 3490 7.509141 TCCCTTGTTGTGCATAATACATATG 57.491 36.000 0.00 0.00 43.64 1.78
2045 3760 5.652452 GCTCAGGTACTATGGAAATTTTGGT 59.348 40.000 0.00 0.00 36.02 3.67
2135 3860 9.168451 TGAACACATTTTAGACTGACACTAAAA 57.832 29.630 11.35 11.35 46.47 1.52
2211 3936 4.571176 GTCTATTCAAGGCGGAAGTTTAGG 59.429 45.833 1.47 0.00 0.00 2.69
2338 4065 7.984050 CAGAAAGCTCAGAGGATGATTTAGTTA 59.016 37.037 0.00 0.00 37.28 2.24
2426 4154 2.540931 GCGTGTCGTTTTCTTACTGGAA 59.459 45.455 0.00 0.00 0.00 3.53
2429 4157 4.505191 CGTGTCGTTTTCTTACTGGAAAGA 59.495 41.667 0.00 0.00 36.69 2.52
2467 4195 6.723298 ATATTTTGTTGGTGTCCAGTTTCA 57.277 33.333 0.00 0.00 33.81 2.69
2527 4257 8.466798 AGTTTTACATGTTCATGCCCTAAATAC 58.533 33.333 2.30 9.96 0.00 1.89
2714 4444 2.420687 CCAGAATCTCAGCCCTTGTACC 60.421 54.545 0.00 0.00 0.00 3.34
2930 4682 4.888917 ACTTCTGAGAACTTGAGTAAGGC 58.111 43.478 0.00 0.00 38.26 4.35
2936 4688 4.056050 GAGAACTTGAGTAAGGCGTTCAA 58.944 43.478 0.00 0.00 38.26 2.69
3082 4934 6.038356 GTGAAAGTATGGGCAATCATTTCAG 58.962 40.000 12.35 0.00 35.30 3.02
3201 5059 7.443272 GTCCAGATGAATTGTATCATGTCATGA 59.557 37.037 17.70 17.70 40.08 3.07
3202 5060 7.660208 TCCAGATGAATTGTATCATGTCATGAG 59.340 37.037 19.86 2.75 43.53 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.135348 TCCATCCACTTCAAGCAGGATAG 59.865 47.826 10.79 5.40 38.77 2.08
1 2 3.114606 TCCATCCACTTCAAGCAGGATA 58.885 45.455 10.79 0.00 38.77 2.59
2 3 1.918262 TCCATCCACTTCAAGCAGGAT 59.082 47.619 6.22 6.22 41.40 3.24
3 4 1.280133 CTCCATCCACTTCAAGCAGGA 59.720 52.381 1.86 1.86 34.12 3.86
4 5 1.681166 CCTCCATCCACTTCAAGCAGG 60.681 57.143 0.00 0.00 0.00 4.85
5 6 1.004044 ACCTCCATCCACTTCAAGCAG 59.996 52.381 0.00 0.00 0.00 4.24
6 7 1.067295 ACCTCCATCCACTTCAAGCA 58.933 50.000 0.00 0.00 0.00 3.91
7 8 1.815003 CAACCTCCATCCACTTCAAGC 59.185 52.381 0.00 0.00 0.00 4.01
8 9 3.077359 GTCAACCTCCATCCACTTCAAG 58.923 50.000 0.00 0.00 0.00 3.02
9 10 2.711009 AGTCAACCTCCATCCACTTCAA 59.289 45.455 0.00 0.00 0.00 2.69
10 11 2.338809 AGTCAACCTCCATCCACTTCA 58.661 47.619 0.00 0.00 0.00 3.02
11 12 3.077359 CAAGTCAACCTCCATCCACTTC 58.923 50.000 0.00 0.00 0.00 3.01
12 13 2.711009 TCAAGTCAACCTCCATCCACTT 59.289 45.455 0.00 0.00 0.00 3.16
13 14 2.338809 TCAAGTCAACCTCCATCCACT 58.661 47.619 0.00 0.00 0.00 4.00
14 15 2.859165 TCAAGTCAACCTCCATCCAC 57.141 50.000 0.00 0.00 0.00 4.02
15 16 2.644299 ACATCAAGTCAACCTCCATCCA 59.356 45.455 0.00 0.00 0.00 3.41
16 17 3.356529 ACATCAAGTCAACCTCCATCC 57.643 47.619 0.00 0.00 0.00 3.51
17 18 4.162320 TCCTACATCAAGTCAACCTCCATC 59.838 45.833 0.00 0.00 0.00 3.51
18 19 4.104086 TCCTACATCAAGTCAACCTCCAT 58.896 43.478 0.00 0.00 0.00 3.41
19 20 3.516586 TCCTACATCAAGTCAACCTCCA 58.483 45.455 0.00 0.00 0.00 3.86
20 21 4.443598 GGATCCTACATCAAGTCAACCTCC 60.444 50.000 3.84 0.00 0.00 4.30
21 22 4.443598 GGGATCCTACATCAAGTCAACCTC 60.444 50.000 12.58 0.00 0.00 3.85
22 23 3.456277 GGGATCCTACATCAAGTCAACCT 59.544 47.826 12.58 0.00 0.00 3.50
23 24 3.433740 GGGGATCCTACATCAAGTCAACC 60.434 52.174 12.58 0.00 0.00 3.77
24 25 3.741388 CGGGGATCCTACATCAAGTCAAC 60.741 52.174 12.58 0.00 0.00 3.18
25 26 2.434336 CGGGGATCCTACATCAAGTCAA 59.566 50.000 12.58 0.00 0.00 3.18
26 27 2.039418 CGGGGATCCTACATCAAGTCA 58.961 52.381 12.58 0.00 0.00 3.41
27 28 2.317040 TCGGGGATCCTACATCAAGTC 58.683 52.381 12.58 0.00 0.00 3.01
28 29 2.471815 TCGGGGATCCTACATCAAGT 57.528 50.000 12.58 0.00 0.00 3.16
29 30 2.094494 CGATCGGGGATCCTACATCAAG 60.094 54.545 12.58 0.00 35.83 3.02
30 31 1.893137 CGATCGGGGATCCTACATCAA 59.107 52.381 12.58 0.00 35.83 2.57
31 32 1.545841 CGATCGGGGATCCTACATCA 58.454 55.000 12.58 0.00 35.83 3.07
32 33 0.818296 CCGATCGGGGATCCTACATC 59.182 60.000 26.95 9.17 35.83 3.06
33 34 0.408309 TCCGATCGGGGATCCTACAT 59.592 55.000 32.79 0.38 35.83 2.29
34 35 0.408309 ATCCGATCGGGGATCCTACA 59.592 55.000 32.79 11.60 43.35 2.74
35 36 3.284711 ATCCGATCGGGGATCCTAC 57.715 57.895 32.79 4.25 43.35 3.18
41 42 2.507854 GCCTTGATCCGATCGGGGA 61.508 63.158 32.79 16.35 41.17 4.81
42 43 2.031163 GCCTTGATCCGATCGGGG 59.969 66.667 32.79 25.21 36.01 5.73
43 44 2.356313 CGCCTTGATCCGATCGGG 60.356 66.667 32.79 17.11 35.59 5.14
44 45 1.661821 GTCGCCTTGATCCGATCGG 60.662 63.158 28.62 28.62 35.76 4.18
45 46 2.011349 CGTCGCCTTGATCCGATCG 61.011 63.158 8.51 8.51 35.76 3.69
46 47 0.935366 GTCGTCGCCTTGATCCGATC 60.935 60.000 1.01 1.01 35.76 3.69
47 48 1.065928 GTCGTCGCCTTGATCCGAT 59.934 57.895 0.00 0.00 35.76 4.18
48 49 2.488355 GTCGTCGCCTTGATCCGA 59.512 61.111 0.00 0.00 0.00 4.55
49 50 2.949678 CGTCGTCGCCTTGATCCG 60.950 66.667 0.00 0.00 0.00 4.18
50 51 2.582498 CCGTCGTCGCCTTGATCC 60.582 66.667 0.00 0.00 35.54 3.36
51 52 3.255379 GCCGTCGTCGCCTTGATC 61.255 66.667 0.00 0.00 35.54 2.92
52 53 4.814294 GGCCGTCGTCGCCTTGAT 62.814 66.667 5.37 0.00 35.54 2.57
60 61 4.865761 TATGCGCTGGCCGTCGTC 62.866 66.667 9.73 10.02 39.71 4.20
66 67 4.830765 TGTCGGTATGCGCTGGCC 62.831 66.667 9.73 6.80 38.85 5.36
67 68 2.588877 ATGTCGGTATGCGCTGGC 60.589 61.111 9.73 0.00 40.52 4.85
68 69 2.885676 GCATGTCGGTATGCGCTGG 61.886 63.158 9.73 0.00 43.36 4.85
69 70 2.628106 GCATGTCGGTATGCGCTG 59.372 61.111 9.73 0.00 43.36 5.18
88 89 4.773117 GTCGTCCACGCCTCCGTC 62.773 72.222 0.00 0.00 46.39 4.79
119 120 3.545481 CTTGCGTGCTAGGCGACG 61.545 66.667 0.00 0.00 36.64 5.12
120 121 3.188786 CCTTGCGTGCTAGGCGAC 61.189 66.667 9.33 0.00 32.76 5.19
124 125 2.046892 ACAGCCTTGCGTGCTAGG 60.047 61.111 16.52 16.52 40.94 3.02
125 126 2.447887 CGACAGCCTTGCGTGCTAG 61.448 63.158 0.00 0.00 36.81 3.42
126 127 2.432456 CGACAGCCTTGCGTGCTA 60.432 61.111 0.00 0.00 36.81 3.49
127 128 4.609018 ACGACAGCCTTGCGTGCT 62.609 61.111 0.00 0.00 40.41 4.40
128 129 4.374702 CACGACAGCCTTGCGTGC 62.375 66.667 0.00 0.00 42.85 5.34
130 131 2.661866 GACACGACAGCCTTGCGT 60.662 61.111 0.00 0.00 37.48 5.24
131 132 3.767230 CGACACGACAGCCTTGCG 61.767 66.667 0.00 0.00 0.00 4.85
132 133 3.414700 CCGACACGACAGCCTTGC 61.415 66.667 0.00 0.00 0.00 4.01
133 134 1.734477 CTCCGACACGACAGCCTTG 60.734 63.158 0.00 0.00 0.00 3.61
134 135 1.461091 TTCTCCGACACGACAGCCTT 61.461 55.000 0.00 0.00 0.00 4.35
135 136 1.867919 CTTCTCCGACACGACAGCCT 61.868 60.000 0.00 0.00 0.00 4.58
136 137 1.444553 CTTCTCCGACACGACAGCC 60.445 63.158 0.00 0.00 0.00 4.85
137 138 0.171455 ATCTTCTCCGACACGACAGC 59.829 55.000 0.00 0.00 0.00 4.40
138 139 1.901538 CATCTTCTCCGACACGACAG 58.098 55.000 0.00 0.00 0.00 3.51
139 140 0.109272 GCATCTTCTCCGACACGACA 60.109 55.000 0.00 0.00 0.00 4.35
140 141 0.171455 AGCATCTTCTCCGACACGAC 59.829 55.000 0.00 0.00 0.00 4.34
141 142 1.671328 CTAGCATCTTCTCCGACACGA 59.329 52.381 0.00 0.00 0.00 4.35
142 143 1.402259 ACTAGCATCTTCTCCGACACG 59.598 52.381 0.00 0.00 0.00 4.49
143 144 2.164624 ACACTAGCATCTTCTCCGACAC 59.835 50.000 0.00 0.00 0.00 3.67
144 145 2.164422 CACACTAGCATCTTCTCCGACA 59.836 50.000 0.00 0.00 0.00 4.35
145 146 2.480416 CCACACTAGCATCTTCTCCGAC 60.480 54.545 0.00 0.00 0.00 4.79
146 147 1.751351 CCACACTAGCATCTTCTCCGA 59.249 52.381 0.00 0.00 0.00 4.55
147 148 1.478510 ACCACACTAGCATCTTCTCCG 59.521 52.381 0.00 0.00 0.00 4.63
148 149 2.480416 CGACCACACTAGCATCTTCTCC 60.480 54.545 0.00 0.00 0.00 3.71
149 150 2.423892 TCGACCACACTAGCATCTTCTC 59.576 50.000 0.00 0.00 0.00 2.87
150 151 2.447443 TCGACCACACTAGCATCTTCT 58.553 47.619 0.00 0.00 0.00 2.85
151 152 2.941453 TCGACCACACTAGCATCTTC 57.059 50.000 0.00 0.00 0.00 2.87
152 153 2.739932 GCATCGACCACACTAGCATCTT 60.740 50.000 0.00 0.00 0.00 2.40
153 154 1.202463 GCATCGACCACACTAGCATCT 60.202 52.381 0.00 0.00 0.00 2.90
154 155 1.202463 AGCATCGACCACACTAGCATC 60.202 52.381 0.00 0.00 0.00 3.91
155 156 0.826715 AGCATCGACCACACTAGCAT 59.173 50.000 0.00 0.00 0.00 3.79
156 157 0.108662 CAGCATCGACCACACTAGCA 60.109 55.000 0.00 0.00 0.00 3.49
157 158 0.173481 TCAGCATCGACCACACTAGC 59.827 55.000 0.00 0.00 0.00 3.42
158 159 2.094494 ACTTCAGCATCGACCACACTAG 60.094 50.000 0.00 0.00 0.00 2.57
159 160 1.893137 ACTTCAGCATCGACCACACTA 59.107 47.619 0.00 0.00 0.00 2.74
160 161 0.681733 ACTTCAGCATCGACCACACT 59.318 50.000 0.00 0.00 0.00 3.55
161 162 1.071605 GACTTCAGCATCGACCACAC 58.928 55.000 0.00 0.00 0.00 3.82
162 163 0.388520 CGACTTCAGCATCGACCACA 60.389 55.000 0.00 0.00 40.86 4.17
163 164 1.078759 CCGACTTCAGCATCGACCAC 61.079 60.000 0.00 0.00 40.86 4.16
164 165 1.215382 CCGACTTCAGCATCGACCA 59.785 57.895 0.00 0.00 40.86 4.02
165 166 0.526524 CTCCGACTTCAGCATCGACC 60.527 60.000 0.00 0.00 40.86 4.79
166 167 0.171455 ACTCCGACTTCAGCATCGAC 59.829 55.000 0.00 0.00 40.86 4.20
167 168 0.171231 CACTCCGACTTCAGCATCGA 59.829 55.000 0.00 0.00 40.86 3.59
168 169 0.803768 CCACTCCGACTTCAGCATCG 60.804 60.000 0.00 0.00 38.08 3.84
169 170 0.532573 TCCACTCCGACTTCAGCATC 59.467 55.000 0.00 0.00 0.00 3.91
170 171 0.534412 CTCCACTCCGACTTCAGCAT 59.466 55.000 0.00 0.00 0.00 3.79
171 172 1.536073 CCTCCACTCCGACTTCAGCA 61.536 60.000 0.00 0.00 0.00 4.41
172 173 1.216710 CCTCCACTCCGACTTCAGC 59.783 63.158 0.00 0.00 0.00 4.26
173 174 1.216710 GCCTCCACTCCGACTTCAG 59.783 63.158 0.00 0.00 0.00 3.02
174 175 2.636412 CGCCTCCACTCCGACTTCA 61.636 63.158 0.00 0.00 0.00 3.02
175 176 2.182030 CGCCTCCACTCCGACTTC 59.818 66.667 0.00 0.00 0.00 3.01
176 177 4.070552 GCGCCTCCACTCCGACTT 62.071 66.667 0.00 0.00 0.00 3.01
195 196 2.809601 CTTTGCCGTCGACCCTCG 60.810 66.667 10.58 0.00 42.10 4.63
196 197 1.446272 CTCTTTGCCGTCGACCCTC 60.446 63.158 10.58 0.00 0.00 4.30
197 198 1.878656 CTCTCTTTGCCGTCGACCCT 61.879 60.000 10.58 0.00 0.00 4.34
198 199 1.446272 CTCTCTTTGCCGTCGACCC 60.446 63.158 10.58 1.66 0.00 4.46
199 200 0.038526 TTCTCTCTTTGCCGTCGACC 60.039 55.000 10.58 0.00 0.00 4.79
200 201 1.779569 TTTCTCTCTTTGCCGTCGAC 58.220 50.000 5.18 5.18 0.00 4.20
201 202 2.132762 GTTTTCTCTCTTTGCCGTCGA 58.867 47.619 0.00 0.00 0.00 4.20
202 203 1.194772 GGTTTTCTCTCTTTGCCGTCG 59.805 52.381 0.00 0.00 0.00 5.12
203 204 1.535896 GGGTTTTCTCTCTTTGCCGTC 59.464 52.381 0.00 0.00 0.00 4.79
204 205 1.605753 GGGTTTTCTCTCTTTGCCGT 58.394 50.000 0.00 0.00 0.00 5.68
205 206 0.517316 CGGGTTTTCTCTCTTTGCCG 59.483 55.000 0.00 0.00 0.00 5.69
206 207 0.881796 CCGGGTTTTCTCTCTTTGCC 59.118 55.000 0.00 0.00 0.00 4.52
207 208 1.892209 TCCGGGTTTTCTCTCTTTGC 58.108 50.000 0.00 0.00 0.00 3.68
208 209 5.392057 GCTTAATCCGGGTTTTCTCTCTTTG 60.392 44.000 4.62 0.00 0.00 2.77
209 210 4.700692 GCTTAATCCGGGTTTTCTCTCTTT 59.299 41.667 4.62 0.00 0.00 2.52
210 211 4.262617 GCTTAATCCGGGTTTTCTCTCTT 58.737 43.478 4.62 0.00 0.00 2.85
211 212 3.263425 TGCTTAATCCGGGTTTTCTCTCT 59.737 43.478 4.62 0.00 0.00 3.10
212 213 3.606687 TGCTTAATCCGGGTTTTCTCTC 58.393 45.455 4.62 0.00 0.00 3.20
213 214 3.713826 TGCTTAATCCGGGTTTTCTCT 57.286 42.857 4.62 0.00 0.00 3.10
214 215 4.398044 TGATTGCTTAATCCGGGTTTTCTC 59.602 41.667 4.62 0.00 0.00 2.87
215 216 4.340617 TGATTGCTTAATCCGGGTTTTCT 58.659 39.130 4.62 0.00 0.00 2.52
216 217 4.440112 CCTGATTGCTTAATCCGGGTTTTC 60.440 45.833 4.62 0.00 32.09 2.29
217 218 3.447229 CCTGATTGCTTAATCCGGGTTTT 59.553 43.478 4.62 0.00 32.09 2.43
218 219 3.023832 CCTGATTGCTTAATCCGGGTTT 58.976 45.455 4.62 0.00 32.09 3.27
219 220 2.654863 CCTGATTGCTTAATCCGGGTT 58.345 47.619 4.75 4.75 32.09 4.11
220 221 1.133792 CCCTGATTGCTTAATCCGGGT 60.134 52.381 16.73 0.00 44.19 5.28
221 222 1.609208 CCCTGATTGCTTAATCCGGG 58.391 55.000 12.94 12.94 43.93 5.73
222 223 2.638480 TCCCTGATTGCTTAATCCGG 57.362 50.000 0.00 0.00 34.51 5.14
223 224 4.640201 TCTTTTCCCTGATTGCTTAATCCG 59.360 41.667 0.00 0.00 0.00 4.18
224 225 5.654209 AGTCTTTTCCCTGATTGCTTAATCC 59.346 40.000 0.00 0.00 0.00 3.01
225 226 6.601217 AGAGTCTTTTCCCTGATTGCTTAATC 59.399 38.462 0.00 0.00 0.00 1.75
226 227 6.376581 CAGAGTCTTTTCCCTGATTGCTTAAT 59.623 38.462 0.00 0.00 0.00 1.40
227 228 5.707298 CAGAGTCTTTTCCCTGATTGCTTAA 59.293 40.000 0.00 0.00 0.00 1.85
228 229 5.221925 ACAGAGTCTTTTCCCTGATTGCTTA 60.222 40.000 0.00 0.00 0.00 3.09
229 230 4.077822 CAGAGTCTTTTCCCTGATTGCTT 58.922 43.478 0.00 0.00 0.00 3.91
230 231 3.073650 ACAGAGTCTTTTCCCTGATTGCT 59.926 43.478 0.00 0.00 0.00 3.91
231 232 3.416156 ACAGAGTCTTTTCCCTGATTGC 58.584 45.455 0.00 0.00 0.00 3.56
232 233 5.046304 TCCTACAGAGTCTTTTCCCTGATTG 60.046 44.000 0.00 0.00 0.00 2.67
233 234 5.046231 GTCCTACAGAGTCTTTTCCCTGATT 60.046 44.000 0.00 0.00 0.00 2.57
234 235 4.468153 GTCCTACAGAGTCTTTTCCCTGAT 59.532 45.833 0.00 0.00 0.00 2.90
235 236 3.833070 GTCCTACAGAGTCTTTTCCCTGA 59.167 47.826 0.00 0.00 0.00 3.86
236 237 3.578716 TGTCCTACAGAGTCTTTTCCCTG 59.421 47.826 0.00 0.00 0.00 4.45
237 238 3.858135 TGTCCTACAGAGTCTTTTCCCT 58.142 45.455 0.00 0.00 0.00 4.20
238 239 4.316645 GTTGTCCTACAGAGTCTTTTCCC 58.683 47.826 0.00 0.00 0.00 3.97
239 240 4.316645 GGTTGTCCTACAGAGTCTTTTCC 58.683 47.826 0.00 0.00 0.00 3.13
240 241 3.988517 CGGTTGTCCTACAGAGTCTTTTC 59.011 47.826 0.00 0.00 0.00 2.29
241 242 3.244112 CCGGTTGTCCTACAGAGTCTTTT 60.244 47.826 0.00 0.00 0.00 2.27
242 243 2.299297 CCGGTTGTCCTACAGAGTCTTT 59.701 50.000 0.00 0.00 0.00 2.52
243 244 1.893801 CCGGTTGTCCTACAGAGTCTT 59.106 52.381 0.00 0.00 0.00 3.01
244 245 1.546961 CCGGTTGTCCTACAGAGTCT 58.453 55.000 0.00 0.00 0.00 3.24
245 246 0.108756 GCCGGTTGTCCTACAGAGTC 60.109 60.000 1.90 0.00 0.00 3.36
246 247 1.542187 GGCCGGTTGTCCTACAGAGT 61.542 60.000 1.90 0.00 0.00 3.24
247 248 1.218316 GGCCGGTTGTCCTACAGAG 59.782 63.158 1.90 0.00 0.00 3.35
248 249 1.122632 TTGGCCGGTTGTCCTACAGA 61.123 55.000 1.90 0.00 0.00 3.41
249 250 0.953960 GTTGGCCGGTTGTCCTACAG 60.954 60.000 1.90 0.00 0.00 2.74
250 251 1.071814 GTTGGCCGGTTGTCCTACA 59.928 57.895 1.90 0.00 0.00 2.74
251 252 1.071814 TGTTGGCCGGTTGTCCTAC 59.928 57.895 1.90 3.23 0.00 3.18
252 253 1.071814 GTGTTGGCCGGTTGTCCTA 59.928 57.895 1.90 0.00 0.00 2.94
253 254 2.203294 GTGTTGGCCGGTTGTCCT 60.203 61.111 1.90 0.00 0.00 3.85
254 255 3.656045 CGTGTTGGCCGGTTGTCC 61.656 66.667 1.90 0.00 0.00 4.02
255 256 1.512156 AATCGTGTTGGCCGGTTGTC 61.512 55.000 1.90 0.00 0.00 3.18
256 257 1.527380 AATCGTGTTGGCCGGTTGT 60.527 52.632 1.90 0.00 0.00 3.32
257 258 1.081509 CAATCGTGTTGGCCGGTTG 60.082 57.895 1.90 0.00 39.69 3.77
258 259 2.265182 CCAATCGTGTTGGCCGGTT 61.265 57.895 1.90 0.00 32.18 4.44
259 260 2.671619 CCAATCGTGTTGGCCGGT 60.672 61.111 1.90 0.00 32.18 5.28
264 265 2.867472 GTCCGCCAATCGTGTTGG 59.133 61.111 15.09 15.09 42.37 3.77
265 266 1.561717 TTCGTCCGCCAATCGTGTTG 61.562 55.000 0.00 0.00 36.19 3.33
266 267 1.301087 TTCGTCCGCCAATCGTGTT 60.301 52.632 0.00 0.00 36.19 3.32
267 268 2.025418 GTTCGTCCGCCAATCGTGT 61.025 57.895 0.00 0.00 36.19 4.49
268 269 2.736682 GGTTCGTCCGCCAATCGTG 61.737 63.158 0.00 0.00 36.19 4.35
269 270 2.433664 GGTTCGTCCGCCAATCGT 60.434 61.111 0.00 0.00 36.19 3.73
270 271 2.287457 TAGGGTTCGTCCGCCAATCG 62.287 60.000 0.00 0.00 37.00 3.34
271 272 0.529992 CTAGGGTTCGTCCGCCAATC 60.530 60.000 0.00 0.00 37.00 2.67
272 273 1.520666 CTAGGGTTCGTCCGCCAAT 59.479 57.895 0.00 0.00 37.00 3.16
273 274 2.652095 CCTAGGGTTCGTCCGCCAA 61.652 63.158 0.00 0.00 37.00 4.52
274 275 2.497792 TACCTAGGGTTCGTCCGCCA 62.498 60.000 14.81 0.00 37.09 5.69
275 276 1.754234 TACCTAGGGTTCGTCCGCC 60.754 63.158 14.81 0.00 37.09 6.13
276 277 1.435105 GTACCTAGGGTTCGTCCGC 59.565 63.158 14.81 0.00 37.09 5.54
277 278 1.718757 CCGTACCTAGGGTTCGTCCG 61.719 65.000 14.81 4.08 43.23 4.79
278 279 1.387295 CCCGTACCTAGGGTTCGTCC 61.387 65.000 14.81 0.00 43.23 4.79
279 280 2.110296 CCCGTACCTAGGGTTCGTC 58.890 63.158 14.81 0.00 43.23 4.20
280 281 4.344237 CCCGTACCTAGGGTTCGT 57.656 61.111 14.81 0.00 43.23 3.85
310 311 4.873129 CCTCCATGACCGTCGCCG 62.873 72.222 0.00 0.00 0.00 6.46
313 314 4.873129 CGGCCTCCATGACCGTCG 62.873 72.222 0.00 0.00 42.01 5.12
314 315 3.458163 TCGGCCTCCATGACCGTC 61.458 66.667 0.00 0.00 46.92 4.79
315 316 3.771160 GTCGGCCTCCATGACCGT 61.771 66.667 0.00 0.00 46.92 4.83
317 318 4.530857 CGGTCGGCCTCCATGACC 62.531 72.222 14.89 14.89 46.91 4.02
367 368 2.886730 AATCCAAACCCTAGCCGCCG 62.887 60.000 0.00 0.00 0.00 6.46
368 369 1.076995 AATCCAAACCCTAGCCGCC 60.077 57.895 0.00 0.00 0.00 6.13
369 370 1.384222 CCAATCCAAACCCTAGCCGC 61.384 60.000 0.00 0.00 0.00 6.53
370 371 0.034477 ACCAATCCAAACCCTAGCCG 60.034 55.000 0.00 0.00 0.00 5.52
371 372 2.231716 AACCAATCCAAACCCTAGCC 57.768 50.000 0.00 0.00 0.00 3.93
372 373 4.770531 AGTTTAACCAATCCAAACCCTAGC 59.229 41.667 0.00 0.00 33.58 3.42
373 374 6.007703 TCAGTTTAACCAATCCAAACCCTAG 58.992 40.000 0.00 0.00 33.58 3.02
374 375 5.954757 TCAGTTTAACCAATCCAAACCCTA 58.045 37.500 0.00 0.00 33.58 3.53
375 376 4.810345 TCAGTTTAACCAATCCAAACCCT 58.190 39.130 0.00 0.00 33.58 4.34
376 377 5.738619 ATCAGTTTAACCAATCCAAACCC 57.261 39.130 0.00 0.00 33.58 4.11
377 378 6.209788 TGGTATCAGTTTAACCAATCCAAACC 59.790 38.462 0.00 0.00 40.28 3.27
378 379 7.222000 TGGTATCAGTTTAACCAATCCAAAC 57.778 36.000 0.00 0.00 40.28 2.93
379 380 7.453126 ACATGGTATCAGTTTAACCAATCCAAA 59.547 33.333 0.00 0.00 45.91 3.28
380 381 6.951198 ACATGGTATCAGTTTAACCAATCCAA 59.049 34.615 0.00 0.00 45.91 3.53
381 382 6.489603 ACATGGTATCAGTTTAACCAATCCA 58.510 36.000 0.00 0.00 45.91 3.41
382 383 7.404671 AACATGGTATCAGTTTAACCAATCC 57.595 36.000 0.00 0.00 45.91 3.01
386 387 8.798402 CCTTTTAACATGGTATCAGTTTAACCA 58.202 33.333 0.00 0.00 46.78 3.67
387 388 8.248253 CCCTTTTAACATGGTATCAGTTTAACC 58.752 37.037 0.00 0.00 0.00 2.85
388 389 9.016438 TCCCTTTTAACATGGTATCAGTTTAAC 57.984 33.333 0.00 0.00 0.00 2.01
389 390 9.238368 CTCCCTTTTAACATGGTATCAGTTTAA 57.762 33.333 0.00 0.00 0.00 1.52
390 391 8.607713 TCTCCCTTTTAACATGGTATCAGTTTA 58.392 33.333 0.00 0.00 0.00 2.01
391 392 7.466804 TCTCCCTTTTAACATGGTATCAGTTT 58.533 34.615 0.00 0.00 0.00 2.66
392 393 7.027874 TCTCCCTTTTAACATGGTATCAGTT 57.972 36.000 0.00 0.00 0.00 3.16
393 394 6.443849 TCTCTCCCTTTTAACATGGTATCAGT 59.556 38.462 0.00 0.00 0.00 3.41
394 395 6.889198 TCTCTCCCTTTTAACATGGTATCAG 58.111 40.000 0.00 0.00 0.00 2.90
395 396 6.443849 ACTCTCTCCCTTTTAACATGGTATCA 59.556 38.462 0.00 0.00 0.00 2.15
396 397 6.763610 CACTCTCTCCCTTTTAACATGGTATC 59.236 42.308 0.00 0.00 0.00 2.24
397 398 6.353082 CCACTCTCTCCCTTTTAACATGGTAT 60.353 42.308 0.00 0.00 0.00 2.73
398 399 5.045869 CCACTCTCTCCCTTTTAACATGGTA 60.046 44.000 0.00 0.00 0.00 3.25
399 400 4.263506 CCACTCTCTCCCTTTTAACATGGT 60.264 45.833 0.00 0.00 0.00 3.55
400 401 4.265073 CCACTCTCTCCCTTTTAACATGG 58.735 47.826 0.00 0.00 0.00 3.66
401 402 4.263506 ACCCACTCTCTCCCTTTTAACATG 60.264 45.833 0.00 0.00 0.00 3.21
402 403 3.916989 ACCCACTCTCTCCCTTTTAACAT 59.083 43.478 0.00 0.00 0.00 2.71
403 404 3.323775 ACCCACTCTCTCCCTTTTAACA 58.676 45.455 0.00 0.00 0.00 2.41
404 405 4.072839 CAACCCACTCTCTCCCTTTTAAC 58.927 47.826 0.00 0.00 0.00 2.01
405 406 3.977999 TCAACCCACTCTCTCCCTTTTAA 59.022 43.478 0.00 0.00 0.00 1.52
406 407 3.593942 TCAACCCACTCTCTCCCTTTTA 58.406 45.455 0.00 0.00 0.00 1.52
407 408 2.418669 TCAACCCACTCTCTCCCTTTT 58.581 47.619 0.00 0.00 0.00 2.27
408 409 2.118403 TCAACCCACTCTCTCCCTTT 57.882 50.000 0.00 0.00 0.00 3.11
409 410 1.912043 CATCAACCCACTCTCTCCCTT 59.088 52.381 0.00 0.00 0.00 3.95
410 411 1.079490 TCATCAACCCACTCTCTCCCT 59.921 52.381 0.00 0.00 0.00 4.20
411 412 1.573108 TCATCAACCCACTCTCTCCC 58.427 55.000 0.00 0.00 0.00 4.30
412 413 5.163258 ACAATATCATCAACCCACTCTCTCC 60.163 44.000 0.00 0.00 0.00 3.71
413 414 5.923204 ACAATATCATCAACCCACTCTCTC 58.077 41.667 0.00 0.00 0.00 3.20
414 415 5.965033 ACAATATCATCAACCCACTCTCT 57.035 39.130 0.00 0.00 0.00 3.10
415 416 8.562892 CAATAACAATATCATCAACCCACTCTC 58.437 37.037 0.00 0.00 0.00 3.20
416 417 8.055181 ACAATAACAATATCATCAACCCACTCT 58.945 33.333 0.00 0.00 0.00 3.24
417 418 8.225603 ACAATAACAATATCATCAACCCACTC 57.774 34.615 0.00 0.00 0.00 3.51
418 419 9.866655 ATACAATAACAATATCATCAACCCACT 57.133 29.630 0.00 0.00 0.00 4.00
421 422 9.410556 GCAATACAATAACAATATCATCAACCC 57.589 33.333 0.00 0.00 0.00 4.11
431 432 9.665719 TGAGACTCAAGCAATACAATAACAATA 57.334 29.630 1.64 0.00 0.00 1.90
432 433 8.565896 TGAGACTCAAGCAATACAATAACAAT 57.434 30.769 1.64 0.00 0.00 2.71
433 434 7.977789 TGAGACTCAAGCAATACAATAACAA 57.022 32.000 1.64 0.00 0.00 2.83
434 435 7.823799 TCATGAGACTCAAGCAATACAATAACA 59.176 33.333 9.70 0.00 0.00 2.41
435 436 8.201554 TCATGAGACTCAAGCAATACAATAAC 57.798 34.615 9.70 0.00 0.00 1.89
436 437 7.011763 GCTCATGAGACTCAAGCAATACAATAA 59.988 37.037 27.04 0.00 32.14 1.40
437 438 6.481313 GCTCATGAGACTCAAGCAATACAATA 59.519 38.462 27.04 0.00 32.14 1.90
438 439 5.296283 GCTCATGAGACTCAAGCAATACAAT 59.704 40.000 27.04 0.00 32.14 2.71
439 440 4.633126 GCTCATGAGACTCAAGCAATACAA 59.367 41.667 27.04 0.00 32.14 2.41
440 441 4.186926 GCTCATGAGACTCAAGCAATACA 58.813 43.478 27.04 0.00 32.14 2.29
441 442 4.033817 GTGCTCATGAGACTCAAGCAATAC 59.966 45.833 26.04 14.67 40.60 1.89
442 443 4.186926 GTGCTCATGAGACTCAAGCAATA 58.813 43.478 26.04 8.08 40.60 1.90
443 444 3.008330 GTGCTCATGAGACTCAAGCAAT 58.992 45.455 26.04 1.88 40.60 3.56
444 445 2.224354 TGTGCTCATGAGACTCAAGCAA 60.224 45.455 26.04 16.56 40.60 3.91
445 446 1.345415 TGTGCTCATGAGACTCAAGCA 59.655 47.619 27.04 22.35 37.75 3.91
446 447 2.090400 TGTGCTCATGAGACTCAAGC 57.910 50.000 27.04 18.42 32.40 4.01
474 475 9.936759 TTGTACATCAAGTAAATCATGTACTCA 57.063 29.630 17.50 6.20 46.31 3.41
540 541 9.416794 CGAGCTTGTTGAGTATATTGATTAGAT 57.583 33.333 0.00 0.00 0.00 1.98
541 542 8.630037 TCGAGCTTGTTGAGTATATTGATTAGA 58.370 33.333 0.00 0.00 0.00 2.10
542 543 8.695284 GTCGAGCTTGTTGAGTATATTGATTAG 58.305 37.037 0.00 0.00 0.00 1.73
543 544 7.378728 CGTCGAGCTTGTTGAGTATATTGATTA 59.621 37.037 0.00 0.00 0.00 1.75
544 545 6.199154 CGTCGAGCTTGTTGAGTATATTGATT 59.801 38.462 0.00 0.00 0.00 2.57
545 546 5.687730 CGTCGAGCTTGTTGAGTATATTGAT 59.312 40.000 0.00 0.00 0.00 2.57
546 547 5.034797 CGTCGAGCTTGTTGAGTATATTGA 58.965 41.667 0.00 0.00 0.00 2.57
547 548 5.034797 TCGTCGAGCTTGTTGAGTATATTG 58.965 41.667 0.00 0.00 0.00 1.90
548 549 5.244785 TCGTCGAGCTTGTTGAGTATATT 57.755 39.130 0.00 0.00 0.00 1.28
549 550 4.895224 TCGTCGAGCTTGTTGAGTATAT 57.105 40.909 0.00 0.00 0.00 0.86
550 551 4.334481 TCATCGTCGAGCTTGTTGAGTATA 59.666 41.667 0.00 0.00 0.00 1.47
551 552 3.128764 TCATCGTCGAGCTTGTTGAGTAT 59.871 43.478 0.00 0.00 0.00 2.12
552 553 2.486592 TCATCGTCGAGCTTGTTGAGTA 59.513 45.455 0.00 0.00 0.00 2.59
553 554 1.269723 TCATCGTCGAGCTTGTTGAGT 59.730 47.619 0.00 0.00 0.00 3.41
554 555 1.982612 TCATCGTCGAGCTTGTTGAG 58.017 50.000 0.00 0.00 0.00 3.02
555 556 2.432206 TTCATCGTCGAGCTTGTTGA 57.568 45.000 0.00 0.59 0.00 3.18
556 557 2.222886 CCATTCATCGTCGAGCTTGTTG 60.223 50.000 0.00 0.00 0.00 3.33
557 558 2.002586 CCATTCATCGTCGAGCTTGTT 58.997 47.619 0.00 0.00 0.00 2.83
558 559 1.066858 ACCATTCATCGTCGAGCTTGT 60.067 47.619 0.00 0.00 0.00 3.16
559 560 1.645034 ACCATTCATCGTCGAGCTTG 58.355 50.000 0.00 0.00 0.00 4.01
560 561 2.271800 GAACCATTCATCGTCGAGCTT 58.728 47.619 0.00 0.00 0.00 3.74
561 562 1.204704 TGAACCATTCATCGTCGAGCT 59.795 47.619 0.00 0.00 34.08 4.09
562 563 1.640428 TGAACCATTCATCGTCGAGC 58.360 50.000 0.00 0.00 34.08 5.03
563 564 2.029728 GCTTGAACCATTCATCGTCGAG 59.970 50.000 0.00 0.00 39.84 4.04
564 565 1.999735 GCTTGAACCATTCATCGTCGA 59.000 47.619 0.00 0.00 39.84 4.20
565 566 1.731709 TGCTTGAACCATTCATCGTCG 59.268 47.619 0.00 0.00 39.84 5.12
566 567 4.100529 CAATGCTTGAACCATTCATCGTC 58.899 43.478 0.00 0.00 39.84 4.20
567 568 3.674138 GCAATGCTTGAACCATTCATCGT 60.674 43.478 0.00 0.00 39.84 3.73
599 600 0.108585 TCTGCAAGGGAGTGTGTTCC 59.891 55.000 0.00 0.00 36.46 3.62
601 602 1.212935 AGTTCTGCAAGGGAGTGTGTT 59.787 47.619 0.00 0.00 0.00 3.32
602 603 0.839946 AGTTCTGCAAGGGAGTGTGT 59.160 50.000 0.00 0.00 0.00 3.72
607 1835 0.671781 CGGACAGTTCTGCAAGGGAG 60.672 60.000 0.00 0.00 0.00 4.30
614 1842 1.661112 GATGCTAACGGACAGTTCTGC 59.339 52.381 0.00 2.25 43.06 4.26
631 1859 4.864334 GAGCGGTGGCCAGGGATG 62.864 72.222 5.11 0.00 41.24 3.51
645 1873 2.358957 TGATTGTACTGGCACATGAGC 58.641 47.619 6.57 6.57 38.20 4.26
649 1877 4.449131 CTCTCATGATTGTACTGGCACAT 58.551 43.478 0.00 0.00 38.20 3.21
667 1895 1.080230 TGCTCTCAACTGCGCTCTC 60.080 57.895 9.73 0.00 0.00 3.20
668 1896 1.373999 GTGCTCTCAACTGCGCTCT 60.374 57.895 9.73 0.00 36.83 4.09
681 1909 5.049167 TGAAAACAAATGTTGATGGTGCTC 58.951 37.500 0.00 0.00 38.44 4.26
685 1913 4.163078 TGGGTGAAAACAAATGTTGATGGT 59.837 37.500 0.00 0.00 38.44 3.55
698 1926 2.348104 GGCCGGGATGGGTGAAAAC 61.348 63.158 2.18 0.00 38.63 2.43
721 1949 1.740296 CCAGGTAGTTTGGCGTCCG 60.740 63.158 0.00 0.00 0.00 4.79
737 1965 2.790433 GTCCATTAAACCTGTGAGCCA 58.210 47.619 0.00 0.00 0.00 4.75
744 1972 3.142951 TCAACACCGTCCATTAAACCTG 58.857 45.455 0.00 0.00 0.00 4.00
817 2329 0.802222 ATCTGACGTGGTCATTCGCG 60.802 55.000 0.00 0.00 41.94 5.87
859 2372 2.565834 AGTTAGCGTTTGGGCTCTTCTA 59.434 45.455 0.00 0.00 43.54 2.10
866 2379 0.031449 TTGCAAGTTAGCGTTTGGGC 59.969 50.000 0.00 0.00 37.31 5.36
946 2476 0.916809 AAAAGGTGATCGGTAGGGGG 59.083 55.000 0.00 0.00 0.00 5.40
981 2511 3.130160 GCAAGGGGAGAGCAAGCG 61.130 66.667 0.00 0.00 0.00 4.68
1345 2875 5.825507 AGCTGAAACTTTTCTAAGCAACAG 58.174 37.500 13.54 0.00 38.16 3.16
1406 2955 6.360681 CGAATCAAGTGAGGACAAACAAATTC 59.639 38.462 0.00 0.00 0.00 2.17
1416 2965 6.255887 CCAACTAATACGAATCAAGTGAGGAC 59.744 42.308 0.00 0.00 0.00 3.85
1496 3045 7.939784 AGTATGATACTGAGTTACTGACACA 57.060 36.000 3.96 0.00 37.69 3.72
1502 3051 8.056400 ACAGAGGAAGTATGATACTGAGTTACT 58.944 37.037 5.78 0.00 39.39 2.24
1503 3052 8.228035 ACAGAGGAAGTATGATACTGAGTTAC 57.772 38.462 5.78 0.00 39.39 2.50
1504 3053 8.824756 AACAGAGGAAGTATGATACTGAGTTA 57.175 34.615 5.78 0.00 39.39 2.24
1505 3054 7.397476 TGAACAGAGGAAGTATGATACTGAGTT 59.603 37.037 5.78 5.35 39.39 3.01
1506 3055 6.892456 TGAACAGAGGAAGTATGATACTGAGT 59.108 38.462 5.78 0.00 39.39 3.41
1507 3056 7.340122 TGAACAGAGGAAGTATGATACTGAG 57.660 40.000 5.78 0.00 39.39 3.35
1508 3057 7.904558 ATGAACAGAGGAAGTATGATACTGA 57.095 36.000 5.78 0.00 39.39 3.41
1509 3058 8.200120 TCAATGAACAGAGGAAGTATGATACTG 58.800 37.037 5.78 0.00 39.39 2.74
1510 3059 8.311395 TCAATGAACAGAGGAAGTATGATACT 57.689 34.615 0.00 0.00 41.73 2.12
1511 3060 7.170658 GCTCAATGAACAGAGGAAGTATGATAC 59.829 40.741 0.00 0.00 32.54 2.24
1520 3069 2.430465 GCAGCTCAATGAACAGAGGAA 58.570 47.619 0.00 0.00 32.54 3.36
1570 3119 5.938710 GGCCTAATTAAGCTTATCAGGTACC 59.061 44.000 20.91 2.73 0.00 3.34
1604 3319 8.108782 GCTCGTACTATTACTCATTGTTTGTTC 58.891 37.037 0.00 0.00 0.00 3.18
1634 3349 2.143122 AGTATTGCACCTGACGTTGTG 58.857 47.619 8.84 8.84 35.58 3.33
1635 3350 2.543777 AGTATTGCACCTGACGTTGT 57.456 45.000 0.00 0.00 0.00 3.32
1636 3351 3.187478 CAAGTATTGCACCTGACGTTG 57.813 47.619 0.00 0.00 40.39 4.10
1659 3374 7.688478 AACAAAAGCACGGAAATAAACTTAC 57.312 32.000 0.00 0.00 0.00 2.34
1735 3450 8.966868 ACAACAAGGGATAAATCACGAATTATT 58.033 29.630 0.00 0.00 34.73 1.40
1744 3459 7.658525 ATTATGCACAACAAGGGATAAATCA 57.341 32.000 0.00 0.00 32.31 2.57
1775 3490 5.401531 TCCCACTCAGTGACATAGTTTAC 57.598 43.478 6.30 0.00 35.23 2.01
2045 3760 0.392863 CATCAGTGGATCACGCCCAA 60.393 55.000 0.00 0.00 39.64 4.12
2135 3860 9.926158 TTGTCTGCACAAATTAATAATTGACAT 57.074 25.926 12.14 0.00 39.69 3.06
2211 3936 2.745821 GTTTCCTGGGTAAATCGTCACC 59.254 50.000 0.00 0.00 0.00 4.02
2338 4065 6.716628 TGCAATTGGTTAGTGAGAGAAGAATT 59.283 34.615 7.72 0.00 0.00 2.17
2353 4080 2.552315 CGTCCAGTAAGTGCAATTGGTT 59.448 45.455 10.14 0.00 0.00 3.67
2486 4215 8.306038 ACATGTAAAACTTGGATGTACGTAGTA 58.694 33.333 0.00 0.00 45.11 1.82
2527 4257 3.220507 TGCCAATGAATGCGAGAAAAG 57.779 42.857 0.00 0.00 0.00 2.27
2649 4379 7.390440 TCCATAACAACTAGAACAAACATCTGG 59.610 37.037 0.00 0.00 0.00 3.86
2714 4444 3.198872 GAGGGGAAAATTCACTAGCTCG 58.801 50.000 0.00 0.00 0.00 5.03
2855 4585 0.531974 TGTTTCTCGTGTGGGTGCTC 60.532 55.000 0.00 0.00 0.00 4.26
2930 4682 4.383649 CCTGTTGCAGAATTTCATTGAACG 59.616 41.667 0.00 0.00 32.44 3.95
2936 4688 7.114754 TCTCTTATCCTGTTGCAGAATTTCAT 58.885 34.615 0.00 0.00 32.44 2.57
3036 4888 7.270779 TCACTGATTCCATCTATTCAGTCAAG 58.729 38.462 1.65 0.00 45.19 3.02
3082 4934 2.084546 AGGTTCTGGTAATTCAAGCGC 58.915 47.619 0.00 0.00 0.00 5.92
3140 4992 2.084546 GGCCAGTGTATTGTGAACTCC 58.915 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.