Multiple sequence alignment - TraesCS2A01G278700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G278700 chr2A 100.000 5383 0 0 1 5383 461695671 461701053 0.000000e+00 9941.0
1 TraesCS2A01G278700 chr2A 98.742 159 2 0 3842 4000 461699308 461699466 3.170000e-72 283.0
2 TraesCS2A01G278700 chr2A 98.742 159 2 0 3638 3796 461699512 461699670 3.170000e-72 283.0
3 TraesCS2A01G278700 chr2A 89.744 117 8 3 4740 4852 141506434 141506318 4.340000e-31 147.0
4 TraesCS2A01G278700 chr2A 87.500 128 10 5 4734 4856 330080104 330080230 5.620000e-30 143.0
5 TraesCS2A01G278700 chr2D 95.675 2312 57 15 831 3103 348197367 348195060 0.000000e+00 3675.0
6 TraesCS2A01G278700 chr2D 95.830 1391 33 12 4014 5383 348193765 348192379 0.000000e+00 2224.0
7 TraesCS2A01G278700 chr2D 97.424 621 15 1 3225 3844 348194648 348194028 0.000000e+00 1057.0
8 TraesCS2A01G278700 chr2D 78.621 725 141 14 1 717 427566384 427565666 8.160000e-128 468.0
9 TraesCS2A01G278700 chr2D 98.742 159 2 0 3842 4000 348194234 348194076 3.170000e-72 283.0
10 TraesCS2A01G278700 chr2B 94.789 1804 39 14 852 2610 413453493 413451700 0.000000e+00 2760.0
11 TraesCS2A01G278700 chr2B 91.857 1400 60 13 4014 5383 413449698 413448323 0.000000e+00 1905.0
12 TraesCS2A01G278700 chr2B 97.207 537 13 2 3225 3760 413450536 413450001 0.000000e+00 907.0
13 TraesCS2A01G278700 chr2B 96.177 497 15 3 2608 3104 413451421 413450929 0.000000e+00 809.0
14 TraesCS2A01G278700 chr2B 77.947 721 142 17 1 710 396948836 396949550 8.280000e-118 435.0
15 TraesCS2A01G278700 chr2B 97.561 123 3 0 3842 3964 413450123 413450001 1.520000e-50 211.0
16 TraesCS2A01G278700 chr2B 91.667 48 4 0 3797 3844 413450003 413449956 3.480000e-07 67.6
17 TraesCS2A01G278700 chr6B 81.604 723 122 8 1 717 422933657 422932940 6.010000e-164 588.0
18 TraesCS2A01G278700 chr6B 76.966 725 159 6 1 719 279020094 279019372 1.810000e-109 407.0
19 TraesCS2A01G278700 chr6B 78.783 608 120 7 1 603 434285201 434284598 3.020000e-107 399.0
20 TraesCS2A01G278700 chr6B 91.447 152 12 1 4858 5008 228690516 228690667 1.960000e-49 207.0
21 TraesCS2A01G278700 chr6B 78.947 285 36 21 4753 5017 536817990 536817710 7.170000e-39 172.0
22 TraesCS2A01G278700 chr6D 78.680 727 143 12 1 719 19504667 19505389 1.750000e-129 473.0
23 TraesCS2A01G278700 chr6D 91.667 156 11 2 4858 5011 351233440 351233595 1.170000e-51 215.0
24 TraesCS2A01G278700 chr6D 91.447 152 12 1 4858 5008 90134895 90135046 1.960000e-49 207.0
25 TraesCS2A01G278700 chr6D 90.385 156 13 2 4858 5011 90112243 90112398 2.540000e-48 204.0
26 TraesCS2A01G278700 chr7A 78.542 727 145 11 1 719 34347050 34347773 8.160000e-128 468.0
27 TraesCS2A01G278700 chr1B 78.571 728 139 16 1 717 555863688 555862967 1.060000e-126 464.0
28 TraesCS2A01G278700 chr7D 78.267 727 146 12 1 719 13890280 13891002 1.770000e-124 457.0
29 TraesCS2A01G278700 chr1D 78.099 726 149 10 1 719 77844865 77845587 8.220000e-123 451.0
30 TraesCS2A01G278700 chr6A 77.021 705 148 13 24 719 606066000 606065301 5.050000e-105 392.0
31 TraesCS2A01G278700 chr6A 91.503 153 11 2 4858 5008 169189732 169189884 5.460000e-50 209.0
32 TraesCS2A01G278700 chr6A 86.923 130 9 7 4734 4857 17377944 17378071 7.270000e-29 139.0
33 TraesCS2A01G278700 chr1A 76.552 725 152 16 1 714 499831862 499832579 1.090000e-101 381.0
34 TraesCS2A01G278700 chr5D 89.937 159 14 2 4858 5014 461072758 461072600 2.540000e-48 204.0
35 TraesCS2A01G278700 chr5D 89.431 123 7 4 4740 4857 220683307 220683186 3.360000e-32 150.0
36 TraesCS2A01G278700 chr5D 87.805 123 11 3 4734 4852 175299935 175300057 2.020000e-29 141.0
37 TraesCS2A01G278700 chr3A 88.618 123 9 3 4740 4857 310692049 310691927 1.560000e-30 145.0
38 TraesCS2A01G278700 chr7B 86.301 73 10 0 731 803 463865063 463865135 4.470000e-11 80.5
39 TraesCS2A01G278700 chr4B 82.192 73 11 2 431 502 670056755 670056826 1.620000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G278700 chr2A 461695671 461701053 5382 False 3502.333333 9941 99.161333 1 5383 3 chr2A.!!$F2 5382
1 TraesCS2A01G278700 chr2D 348192379 348197367 4988 True 1809.750000 3675 96.917750 831 5383 4 chr2D.!!$R2 4552
2 TraesCS2A01G278700 chr2D 427565666 427566384 718 True 468.000000 468 78.621000 1 717 1 chr2D.!!$R1 716
3 TraesCS2A01G278700 chr2B 413448323 413453493 5170 True 1109.933333 2760 94.876333 852 5383 6 chr2B.!!$R1 4531
4 TraesCS2A01G278700 chr2B 396948836 396949550 714 False 435.000000 435 77.947000 1 710 1 chr2B.!!$F1 709
5 TraesCS2A01G278700 chr6B 422932940 422933657 717 True 588.000000 588 81.604000 1 717 1 chr6B.!!$R2 716
6 TraesCS2A01G278700 chr6B 279019372 279020094 722 True 407.000000 407 76.966000 1 719 1 chr6B.!!$R1 718
7 TraesCS2A01G278700 chr6B 434284598 434285201 603 True 399.000000 399 78.783000 1 603 1 chr6B.!!$R3 602
8 TraesCS2A01G278700 chr6D 19504667 19505389 722 False 473.000000 473 78.680000 1 719 1 chr6D.!!$F1 718
9 TraesCS2A01G278700 chr7A 34347050 34347773 723 False 468.000000 468 78.542000 1 719 1 chr7A.!!$F1 718
10 TraesCS2A01G278700 chr1B 555862967 555863688 721 True 464.000000 464 78.571000 1 717 1 chr1B.!!$R1 716
11 TraesCS2A01G278700 chr7D 13890280 13891002 722 False 457.000000 457 78.267000 1 719 1 chr7D.!!$F1 718
12 TraesCS2A01G278700 chr1D 77844865 77845587 722 False 451.000000 451 78.099000 1 719 1 chr1D.!!$F1 718
13 TraesCS2A01G278700 chr6A 606065301 606066000 699 True 392.000000 392 77.021000 24 719 1 chr6A.!!$R1 695
14 TraesCS2A01G278700 chr1A 499831862 499832579 717 False 381.000000 381 76.552000 1 714 1 chr1A.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 654 0.040646 CCCTTTTTCCCACCCCCTAC 59.959 60.0 0.00 0.0 0.00 3.18 F
744 754 0.107017 CGGCCAGAAATCACCCAGAT 60.107 55.0 2.24 0.0 39.09 2.90 F
1593 1631 0.106519 GAATATGGTGCCTGCCCTGT 60.107 55.0 0.00 0.0 0.00 4.00 F
2145 2196 0.183492 AAGTTTCACCTGCTGGCTCA 59.817 50.0 9.95 0.0 36.63 4.26 F
3113 3450 0.336737 AGGTCTCCACGGGATCTTCT 59.663 55.0 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1631 0.183492 GTTCATAGCATGGGCAGGGA 59.817 55.0 0.00 0.0 44.61 4.20 R
2733 3070 0.944311 GACTGACCACAATCGCACGT 60.944 55.0 0.00 0.0 0.00 4.49 R
3156 3493 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.0 0.00 0.0 0.00 4.12 R
3161 3498 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.00 0.0 0.00 3.82 R
4597 5321 0.252375 ATGCCCAAAGAGCCATTGGT 60.252 50.0 4.26 0.0 44.77 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.770010 TTTCCTAACAAAAGTCAAAGGGAATA 57.230 30.769 0.00 0.00 31.68 1.75
98 99 2.821969 CCTGTCCAATTTCTCAAGGGTG 59.178 50.000 0.00 0.00 0.00 4.61
116 117 3.371059 GGGTGGGGTTTTGTTGATTGTTT 60.371 43.478 0.00 0.00 0.00 2.83
159 160 7.920151 CACCATTCATGTCTACTTCTCTTAGAG 59.080 40.741 2.23 2.23 0.00 2.43
202 203 9.412460 AGAATTAAACATATGAGAAGAATGGCA 57.588 29.630 10.38 0.00 0.00 4.92
251 252 9.391006 TCACCAACATGTCTAAGGATATTAAAC 57.609 33.333 0.00 0.00 0.00 2.01
299 300 8.349245 CAGGAAATGTTACTACACATGTCAAAA 58.651 33.333 0.00 0.00 41.58 2.44
360 361 7.810282 GTGCAGATCCATACACTACAAGTATAG 59.190 40.741 0.00 0.00 31.32 1.31
406 411 8.519526 TGTCCCATAACTCAAATTTCATAACAC 58.480 33.333 0.00 0.00 0.00 3.32
409 414 7.759433 CCCATAACTCAAATTTCATAACACACC 59.241 37.037 0.00 0.00 0.00 4.16
429 434 5.178797 CACCTTCCTACAATACAAGACCTG 58.821 45.833 0.00 0.00 0.00 4.00
435 440 7.215719 TCCTACAATACAAGACCTGATATCG 57.784 40.000 0.00 0.00 0.00 2.92
441 446 7.492669 ACAATACAAGACCTGATATCGAAAGTG 59.507 37.037 0.00 0.00 0.00 3.16
471 476 1.259609 TACCGCATAAGATACCCCCG 58.740 55.000 0.00 0.00 0.00 5.73
495 500 1.002069 TGCCAACAGAAGGGATCCAT 58.998 50.000 15.23 2.55 0.00 3.41
508 514 5.425196 AGGGATCCATTTCCAACAAAATG 57.575 39.130 15.23 3.02 43.28 2.32
514 520 8.795513 GGATCCATTTCCAACAAAATGATTTTT 58.204 29.630 6.95 0.00 45.40 1.94
516 522 8.164058 TCCATTTCCAACAAAATGATTTTTCC 57.836 30.769 0.00 0.00 45.40 3.13
536 542 5.116084 TCCGGATCAATTTTCCTCAAGAT 57.884 39.130 0.00 0.00 0.00 2.40
605 611 8.731591 AAATCCAAGCAATATTCCCTAATCAT 57.268 30.769 0.00 0.00 0.00 2.45
633 639 0.409484 AGCAAGTTGCCATACCCCTT 59.591 50.000 24.02 0.00 46.52 3.95
642 648 1.860641 CCATACCCCTTTTTCCCACC 58.139 55.000 0.00 0.00 0.00 4.61
646 652 2.487968 CCCCTTTTTCCCACCCCCT 61.488 63.158 0.00 0.00 0.00 4.79
648 654 0.040646 CCCTTTTTCCCACCCCCTAC 59.959 60.000 0.00 0.00 0.00 3.18
649 655 0.781278 CCTTTTTCCCACCCCCTACA 59.219 55.000 0.00 0.00 0.00 2.74
698 708 3.638160 TGCATTTTGGAGAGTGAGCTTTT 59.362 39.130 0.00 0.00 0.00 2.27
719 729 2.949177 TGCTAGGTTTGCCAAGAAGA 57.051 45.000 0.00 0.00 37.19 2.87
720 730 3.439857 TGCTAGGTTTGCCAAGAAGAT 57.560 42.857 0.00 0.00 37.19 2.40
721 731 3.347216 TGCTAGGTTTGCCAAGAAGATC 58.653 45.455 0.00 0.00 37.19 2.75
722 732 3.009473 TGCTAGGTTTGCCAAGAAGATCT 59.991 43.478 0.00 0.00 37.19 2.75
723 733 3.376546 GCTAGGTTTGCCAAGAAGATCTG 59.623 47.826 0.00 0.00 37.19 2.90
724 734 3.795688 AGGTTTGCCAAGAAGATCTGA 57.204 42.857 0.00 0.00 37.19 3.27
725 735 3.416156 AGGTTTGCCAAGAAGATCTGAC 58.584 45.455 0.00 0.00 37.19 3.51
726 736 2.160417 GGTTTGCCAAGAAGATCTGACG 59.840 50.000 0.00 0.00 34.09 4.35
727 737 2.099141 TTGCCAAGAAGATCTGACGG 57.901 50.000 0.00 0.00 0.00 4.79
728 738 0.391661 TGCCAAGAAGATCTGACGGC 60.392 55.000 15.38 15.38 37.53 5.68
729 739 1.092345 GCCAAGAAGATCTGACGGCC 61.092 60.000 12.49 0.00 33.48 6.13
730 740 0.250234 CCAAGAAGATCTGACGGCCA 59.750 55.000 2.24 0.00 0.00 5.36
731 741 1.649664 CAAGAAGATCTGACGGCCAG 58.350 55.000 2.24 0.00 44.27 4.85
739 749 2.471255 CTGACGGCCAGAAATCACC 58.529 57.895 2.24 0.00 45.78 4.02
740 750 1.002624 TGACGGCCAGAAATCACCC 60.003 57.895 2.24 0.00 0.00 4.61
741 751 1.002624 GACGGCCAGAAATCACCCA 60.003 57.895 2.24 0.00 0.00 4.51
742 752 1.002134 ACGGCCAGAAATCACCCAG 60.002 57.895 2.24 0.00 0.00 4.45
743 753 1.299648 CGGCCAGAAATCACCCAGA 59.700 57.895 2.24 0.00 0.00 3.86
744 754 0.107017 CGGCCAGAAATCACCCAGAT 60.107 55.000 2.24 0.00 39.09 2.90
745 755 1.396653 GGCCAGAAATCACCCAGATG 58.603 55.000 0.00 0.00 36.96 2.90
746 756 1.341383 GGCCAGAAATCACCCAGATGT 60.341 52.381 0.00 0.00 36.96 3.06
747 757 1.747355 GCCAGAAATCACCCAGATGTG 59.253 52.381 0.00 0.00 36.96 3.21
755 765 3.694043 TCACCCAGATGTGAAATCGAA 57.306 42.857 0.00 0.00 42.06 3.71
756 766 3.334691 TCACCCAGATGTGAAATCGAAC 58.665 45.455 0.00 0.00 42.06 3.95
757 767 2.094258 CACCCAGATGTGAAATCGAACG 59.906 50.000 0.00 0.00 38.55 3.95
758 768 1.665679 CCCAGATGTGAAATCGAACGG 59.334 52.381 0.00 0.00 0.00 4.44
759 769 2.346803 CCAGATGTGAAATCGAACGGT 58.653 47.619 0.00 0.00 0.00 4.83
760 770 2.742053 CCAGATGTGAAATCGAACGGTT 59.258 45.455 0.00 0.00 0.00 4.44
761 771 3.930229 CCAGATGTGAAATCGAACGGTTA 59.070 43.478 0.00 0.00 0.00 2.85
762 772 4.390603 CCAGATGTGAAATCGAACGGTTAA 59.609 41.667 0.00 0.00 0.00 2.01
763 773 5.106869 CCAGATGTGAAATCGAACGGTTAAA 60.107 40.000 0.00 0.00 0.00 1.52
764 774 6.367421 CAGATGTGAAATCGAACGGTTAAAA 58.633 36.000 0.00 0.00 0.00 1.52
765 775 6.853872 CAGATGTGAAATCGAACGGTTAAAAA 59.146 34.615 0.00 0.00 0.00 1.94
766 776 7.059488 CAGATGTGAAATCGAACGGTTAAAAAG 59.941 37.037 0.00 0.00 0.00 2.27
767 777 6.360844 TGTGAAATCGAACGGTTAAAAAGA 57.639 33.333 0.00 0.00 0.00 2.52
768 778 6.193761 TGTGAAATCGAACGGTTAAAAAGAC 58.806 36.000 0.00 0.00 0.00 3.01
769 779 6.037391 TGTGAAATCGAACGGTTAAAAAGACT 59.963 34.615 0.00 0.00 0.00 3.24
770 780 6.356190 GTGAAATCGAACGGTTAAAAAGACTG 59.644 38.462 0.00 0.00 0.00 3.51
771 781 6.258287 TGAAATCGAACGGTTAAAAAGACTGA 59.742 34.615 0.00 0.00 0.00 3.41
772 782 6.796705 AATCGAACGGTTAAAAAGACTGAT 57.203 33.333 0.00 0.00 0.00 2.90
773 783 7.894376 AATCGAACGGTTAAAAAGACTGATA 57.106 32.000 0.00 0.00 0.00 2.15
774 784 6.939551 TCGAACGGTTAAAAAGACTGATAG 57.060 37.500 0.00 0.00 0.00 2.08
775 785 5.865552 TCGAACGGTTAAAAAGACTGATAGG 59.134 40.000 0.00 0.00 0.00 2.57
776 786 5.063060 CGAACGGTTAAAAAGACTGATAGGG 59.937 44.000 0.00 0.00 0.00 3.53
777 787 5.494390 ACGGTTAAAAAGACTGATAGGGT 57.506 39.130 0.00 0.00 0.00 4.34
778 788 5.243207 ACGGTTAAAAAGACTGATAGGGTG 58.757 41.667 0.00 0.00 0.00 4.61
779 789 5.012354 ACGGTTAAAAAGACTGATAGGGTGA 59.988 40.000 0.00 0.00 0.00 4.02
780 790 5.581085 CGGTTAAAAAGACTGATAGGGTGAG 59.419 44.000 0.00 0.00 0.00 3.51
781 791 6.573680 CGGTTAAAAAGACTGATAGGGTGAGA 60.574 42.308 0.00 0.00 0.00 3.27
782 792 6.819146 GGTTAAAAAGACTGATAGGGTGAGAG 59.181 42.308 0.00 0.00 0.00 3.20
783 793 5.428184 AAAAAGACTGATAGGGTGAGAGG 57.572 43.478 0.00 0.00 0.00 3.69
784 794 2.765689 AGACTGATAGGGTGAGAGGG 57.234 55.000 0.00 0.00 0.00 4.30
785 795 1.044611 GACTGATAGGGTGAGAGGGC 58.955 60.000 0.00 0.00 0.00 5.19
786 796 0.639392 ACTGATAGGGTGAGAGGGCT 59.361 55.000 0.00 0.00 0.00 5.19
787 797 1.337118 CTGATAGGGTGAGAGGGCTC 58.663 60.000 0.00 0.00 41.67 4.70
788 798 0.468214 TGATAGGGTGAGAGGGCTCG 60.468 60.000 0.00 0.00 44.33 5.03
794 804 3.354131 GTGAGAGGGCTCGCTTTAG 57.646 57.895 0.00 0.00 45.87 1.85
795 805 0.179097 GTGAGAGGGCTCGCTTTAGG 60.179 60.000 0.00 0.00 45.87 2.69
796 806 1.227409 GAGAGGGCTCGCTTTAGGC 60.227 63.158 0.00 0.00 41.17 3.93
797 807 1.681486 GAGAGGGCTCGCTTTAGGCT 61.681 60.000 0.00 0.00 41.59 4.58
798 808 1.227409 GAGGGCTCGCTTTAGGCTC 60.227 63.158 0.00 0.00 41.59 4.70
799 809 1.961180 GAGGGCTCGCTTTAGGCTCA 61.961 60.000 0.00 0.00 41.59 4.26
800 810 1.522580 GGGCTCGCTTTAGGCTCAG 60.523 63.158 0.00 0.00 41.59 3.35
801 811 1.219393 GGCTCGCTTTAGGCTCAGT 59.781 57.895 0.00 0.00 38.92 3.41
802 812 0.391793 GGCTCGCTTTAGGCTCAGTT 60.392 55.000 0.00 0.00 38.92 3.16
803 813 1.443802 GCTCGCTTTAGGCTCAGTTT 58.556 50.000 0.00 0.00 39.13 2.66
804 814 2.618053 GCTCGCTTTAGGCTCAGTTTA 58.382 47.619 0.00 0.00 39.13 2.01
805 815 2.605366 GCTCGCTTTAGGCTCAGTTTAG 59.395 50.000 0.00 0.00 39.13 1.85
806 816 3.676324 GCTCGCTTTAGGCTCAGTTTAGA 60.676 47.826 0.00 0.00 39.13 2.10
807 817 4.688021 CTCGCTTTAGGCTCAGTTTAGAT 58.312 43.478 0.00 0.00 39.13 1.98
808 818 5.086104 TCGCTTTAGGCTCAGTTTAGATT 57.914 39.130 0.00 0.00 39.13 2.40
809 819 5.488341 TCGCTTTAGGCTCAGTTTAGATTT 58.512 37.500 0.00 0.00 39.13 2.17
810 820 5.938125 TCGCTTTAGGCTCAGTTTAGATTTT 59.062 36.000 0.00 0.00 39.13 1.82
811 821 6.430000 TCGCTTTAGGCTCAGTTTAGATTTTT 59.570 34.615 0.00 0.00 39.13 1.94
848 858 5.414144 AGAAAAAGGCTCAGTTTAGATGCTC 59.586 40.000 0.00 0.00 0.00 4.26
889 899 1.810151 GATAGCGGAGAAGCGAGAGAT 59.190 52.381 0.00 0.00 43.00 2.75
905 915 2.900546 AGAGATCCCATCAACCGGATAC 59.099 50.000 9.46 0.00 39.04 2.24
906 916 2.632996 GAGATCCCATCAACCGGATACA 59.367 50.000 9.46 0.00 39.04 2.29
1246 1263 1.675720 GGTTGCTTGGCAGGTGTTGT 61.676 55.000 0.00 0.00 40.61 3.32
1266 1283 4.785453 GAGCTGGGTTCGGGCTGG 62.785 72.222 0.00 0.00 36.37 4.85
1280 1297 4.969196 CTGGTGTCGCGGCACAGT 62.969 66.667 40.52 0.00 40.89 3.55
1384 1401 4.521146 CCTAACACAGAGGCATCAGATTT 58.479 43.478 0.00 0.00 0.00 2.17
1508 1525 3.674997 TCCTGTTTCTAGTGCACCATTC 58.325 45.455 14.63 0.33 0.00 2.67
1520 1537 2.700371 TGCACCATTCGAGATACTGGAT 59.300 45.455 6.94 0.00 32.92 3.41
1541 1558 7.472334 GGATATGCATCCTTTTACCATTGAT 57.528 36.000 0.19 0.00 46.47 2.57
1543 1560 9.023962 GGATATGCATCCTTTTACCATTGATTA 57.976 33.333 0.19 0.00 46.47 1.75
1593 1631 0.106519 GAATATGGTGCCTGCCCTGT 60.107 55.000 0.00 0.00 0.00 4.00
1948 1999 6.231211 CCAGGGATTTACTGCTTAATATCGT 58.769 40.000 0.00 0.00 34.65 3.73
2145 2196 0.183492 AAGTTTCACCTGCTGGCTCA 59.817 50.000 9.95 0.00 36.63 4.26
2776 3113 1.336887 TGCGTTCTGGTAGAGCTTGTC 60.337 52.381 0.00 0.00 0.00 3.18
2794 3131 6.540982 GCTTGTCCAAGTGCTTAGAAGCTAA 61.541 44.000 14.96 0.00 44.01 3.09
2834 3171 9.743581 TGGCTACATCATACATGATCAAAATAT 57.256 29.630 0.00 0.00 45.23 1.28
2883 3220 2.343101 TGGGACACTCTTATTTTCGCG 58.657 47.619 0.00 0.00 0.00 5.87
2892 3229 4.143179 ACTCTTATTTTCGCGCAAGTACAC 60.143 41.667 8.75 0.00 41.68 2.90
2975 3312 2.562738 GCACCTTGGGCTTATCTTGTTT 59.437 45.455 0.00 0.00 0.00 2.83
3092 3429 3.373748 TGCCTGTATTACTTTGCACATCG 59.626 43.478 0.00 0.00 0.00 3.84
3110 3447 4.688770 GAGGTCTCCACGGGATCT 57.311 61.111 0.00 0.00 0.00 2.75
3111 3448 2.903404 GAGGTCTCCACGGGATCTT 58.097 57.895 0.00 0.00 0.00 2.40
3112 3449 0.747852 GAGGTCTCCACGGGATCTTC 59.252 60.000 0.00 0.00 0.00 2.87
3113 3450 0.336737 AGGTCTCCACGGGATCTTCT 59.663 55.000 0.00 0.00 0.00 2.85
3114 3451 0.461961 GGTCTCCACGGGATCTTCTG 59.538 60.000 0.00 0.00 0.00 3.02
3115 3452 1.475403 GTCTCCACGGGATCTTCTGA 58.525 55.000 0.00 0.00 0.00 3.27
3116 3453 2.035632 GTCTCCACGGGATCTTCTGAT 58.964 52.381 0.00 0.00 35.26 2.90
3117 3454 2.035321 GTCTCCACGGGATCTTCTGATC 59.965 54.545 0.00 0.00 46.21 2.92
3118 3455 2.091610 TCTCCACGGGATCTTCTGATCT 60.092 50.000 6.08 0.00 46.18 2.75
3119 3456 2.034878 TCCACGGGATCTTCTGATCTG 58.965 52.381 6.08 0.00 46.18 2.90
3120 3457 1.759445 CCACGGGATCTTCTGATCTGT 59.241 52.381 6.08 3.31 46.18 3.41
3121 3458 2.169352 CCACGGGATCTTCTGATCTGTT 59.831 50.000 6.08 0.00 46.18 3.16
3122 3459 3.452474 CACGGGATCTTCTGATCTGTTC 58.548 50.000 6.08 0.00 46.18 3.18
3123 3460 3.099905 ACGGGATCTTCTGATCTGTTCA 58.900 45.455 6.08 0.00 46.18 3.18
3124 3461 3.515502 ACGGGATCTTCTGATCTGTTCAA 59.484 43.478 6.08 0.00 46.18 2.69
3125 3462 4.020218 ACGGGATCTTCTGATCTGTTCAAA 60.020 41.667 6.08 0.00 46.18 2.69
3126 3463 5.121811 CGGGATCTTCTGATCTGTTCAAAT 58.878 41.667 6.08 0.00 46.18 2.32
3127 3464 5.587844 CGGGATCTTCTGATCTGTTCAAATT 59.412 40.000 6.08 0.00 46.18 1.82
3128 3465 6.763135 CGGGATCTTCTGATCTGTTCAAATTA 59.237 38.462 6.08 0.00 46.18 1.40
3129 3466 7.280876 CGGGATCTTCTGATCTGTTCAAATTAA 59.719 37.037 6.08 0.00 46.18 1.40
3130 3467 8.401709 GGGATCTTCTGATCTGTTCAAATTAAC 58.598 37.037 6.08 0.00 46.18 2.01
3131 3468 8.401709 GGATCTTCTGATCTGTTCAAATTAACC 58.598 37.037 6.08 0.00 46.18 2.85
3132 3469 8.868522 ATCTTCTGATCTGTTCAAATTAACCA 57.131 30.769 0.00 0.00 32.78 3.67
3133 3470 8.099364 TCTTCTGATCTGTTCAAATTAACCAC 57.901 34.615 0.00 0.00 32.78 4.16
3134 3471 7.939039 TCTTCTGATCTGTTCAAATTAACCACT 59.061 33.333 0.00 0.00 32.78 4.00
3135 3472 9.219603 CTTCTGATCTGTTCAAATTAACCACTA 57.780 33.333 0.00 0.00 32.78 2.74
3136 3473 8.547967 TCTGATCTGTTCAAATTAACCACTAC 57.452 34.615 0.00 0.00 32.78 2.73
3137 3474 7.606456 TCTGATCTGTTCAAATTAACCACTACC 59.394 37.037 0.00 0.00 32.78 3.18
3138 3475 7.227873 TGATCTGTTCAAATTAACCACTACCA 58.772 34.615 0.00 0.00 0.00 3.25
3139 3476 6.870971 TCTGTTCAAATTAACCACTACCAC 57.129 37.500 0.00 0.00 0.00 4.16
3140 3477 6.358178 TCTGTTCAAATTAACCACTACCACA 58.642 36.000 0.00 0.00 0.00 4.17
3141 3478 6.485313 TCTGTTCAAATTAACCACTACCACAG 59.515 38.462 0.00 0.00 0.00 3.66
3142 3479 5.009210 TGTTCAAATTAACCACTACCACAGC 59.991 40.000 0.00 0.00 0.00 4.40
3143 3480 4.720046 TCAAATTAACCACTACCACAGCA 58.280 39.130 0.00 0.00 0.00 4.41
3144 3481 4.517453 TCAAATTAACCACTACCACAGCAC 59.483 41.667 0.00 0.00 0.00 4.40
3145 3482 2.554370 TTAACCACTACCACAGCACC 57.446 50.000 0.00 0.00 0.00 5.01
3146 3483 0.688487 TAACCACTACCACAGCACCC 59.312 55.000 0.00 0.00 0.00 4.61
3147 3484 2.064242 AACCACTACCACAGCACCCC 62.064 60.000 0.00 0.00 0.00 4.95
3148 3485 2.351276 CACTACCACAGCACCCCC 59.649 66.667 0.00 0.00 0.00 5.40
3168 3505 4.885270 CGGCCCCCAACACACACA 62.885 66.667 0.00 0.00 0.00 3.72
3169 3506 3.223589 GGCCCCCAACACACACAC 61.224 66.667 0.00 0.00 0.00 3.82
3170 3507 2.441164 GCCCCCAACACACACACA 60.441 61.111 0.00 0.00 0.00 3.72
3171 3508 2.781158 GCCCCCAACACACACACAC 61.781 63.158 0.00 0.00 0.00 3.82
3172 3509 1.379176 CCCCCAACACACACACACA 60.379 57.895 0.00 0.00 0.00 3.72
3173 3510 1.662438 CCCCCAACACACACACACAC 61.662 60.000 0.00 0.00 0.00 3.82
3174 3511 0.962855 CCCCAACACACACACACACA 60.963 55.000 0.00 0.00 0.00 3.72
3175 3512 0.170116 CCCAACACACACACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
3176 3513 0.877743 CCAACACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
3177 3514 1.400888 CCAACACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
3178 3515 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
3179 3516 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3180 3517 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
3188 3777 0.799393 CACACACACACGGACACAAA 59.201 50.000 0.00 0.00 0.00 2.83
3216 3823 8.454106 AGAATTCCAGTAAGATCATTTTTGACG 58.546 33.333 0.65 0.00 0.00 4.35
3220 3827 6.312918 TCCAGTAAGATCATTTTTGACGCTAC 59.687 38.462 0.00 0.00 0.00 3.58
3225 3832 7.715265 AAGATCATTTTTGACGCTACGATAT 57.285 32.000 0.00 0.00 0.00 1.63
3227 3834 8.142994 AGATCATTTTTGACGCTACGATATTT 57.857 30.769 0.00 0.00 0.00 1.40
3229 3836 7.946918 TCATTTTTGACGCTACGATATTTTG 57.053 32.000 0.00 0.00 0.00 2.44
3230 3837 6.964370 TCATTTTTGACGCTACGATATTTTGG 59.036 34.615 0.00 0.00 0.00 3.28
3231 3838 4.868450 TTTGACGCTACGATATTTTGGG 57.132 40.909 0.00 0.00 0.00 4.12
3232 3839 2.206750 TGACGCTACGATATTTTGGGC 58.793 47.619 0.00 0.00 0.00 5.36
3233 3840 1.529865 GACGCTACGATATTTTGGGCC 59.470 52.381 0.00 0.00 0.00 5.80
3234 3841 0.511221 CGCTACGATATTTTGGGCCG 59.489 55.000 0.00 0.00 0.00 6.13
3235 3842 0.872388 GCTACGATATTTTGGGCCGG 59.128 55.000 0.00 0.00 0.00 6.13
3238 3845 1.149627 CGATATTTTGGGCCGGGGA 59.850 57.895 2.18 0.00 0.00 4.81
3390 4018 6.095377 GGTTTTGGTAATTCTCAGATGCTTG 58.905 40.000 0.00 0.00 0.00 4.01
3750 4378 5.478407 TCAGTTTGATACGATTGCAGAGAA 58.522 37.500 0.00 0.00 0.00 2.87
3755 4383 4.820897 TGATACGATTGCAGAGAAACACT 58.179 39.130 0.00 0.00 0.00 3.55
3801 4429 4.899352 AAGTACTCTGCTCACTTTGGAT 57.101 40.909 0.00 0.00 0.00 3.41
3802 4430 4.899352 AGTACTCTGCTCACTTTGGATT 57.101 40.909 0.00 0.00 0.00 3.01
3836 4464 3.900601 ACCAAACTTAACATCATTGCCCA 59.099 39.130 0.00 0.00 0.00 5.36
3841 4469 7.040548 CCAAACTTAACATCATTGCCCAAAATT 60.041 33.333 0.00 0.00 0.00 1.82
3861 4489 9.826574 CAAAATTTGGATGTTGATCTAATGGAT 57.173 29.630 0.00 0.00 33.08 3.41
3875 4503 9.551734 TGATCTAATGGATAAGAAATGTGACTG 57.448 33.333 0.00 0.00 34.33 3.51
3876 4504 8.915057 ATCTAATGGATAAGAAATGTGACTGG 57.085 34.615 0.00 0.00 32.04 4.00
3877 4505 7.282585 TCTAATGGATAAGAAATGTGACTGGG 58.717 38.462 0.00 0.00 0.00 4.45
3879 4507 5.715439 TGGATAAGAAATGTGACTGGGAT 57.285 39.130 0.00 0.00 0.00 3.85
3880 4508 6.823286 TGGATAAGAAATGTGACTGGGATA 57.177 37.500 0.00 0.00 0.00 2.59
3882 4510 8.504811 TGGATAAGAAATGTGACTGGGATATA 57.495 34.615 0.00 0.00 0.00 0.86
3884 4512 9.220767 GGATAAGAAATGTGACTGGGATATAAC 57.779 37.037 0.00 0.00 0.00 1.89
3887 4515 8.877864 AAGAAATGTGACTGGGATATAACAAA 57.122 30.769 0.00 0.00 0.00 2.83
3888 4516 8.877864 AGAAATGTGACTGGGATATAACAAAA 57.122 30.769 0.00 0.00 0.00 2.44
3889 4517 9.308000 AGAAATGTGACTGGGATATAACAAAAA 57.692 29.630 0.00 0.00 0.00 1.94
3911 4539 7.964604 AAAATCAAGTAAGGTGTGACTAGAC 57.035 36.000 0.00 0.00 0.00 2.59
3912 4540 6.665992 AATCAAGTAAGGTGTGACTAGACA 57.334 37.500 0.00 0.00 0.00 3.41
3915 4543 6.688578 TCAAGTAAGGTGTGACTAGACAATC 58.311 40.000 0.00 0.00 0.00 2.67
3917 4545 6.518208 AGTAAGGTGTGACTAGACAATCTC 57.482 41.667 0.00 0.00 0.00 2.75
3919 4547 5.808366 AAGGTGTGACTAGACAATCTCAA 57.192 39.130 0.00 0.00 0.00 3.02
3925 4553 7.173218 GGTGTGACTAGACAATCTCAATTTCAA 59.827 37.037 0.00 0.00 0.00 2.69
3926 4554 8.725148 GTGTGACTAGACAATCTCAATTTCAAT 58.275 33.333 0.00 0.00 0.00 2.57
3927 4555 9.942850 TGTGACTAGACAATCTCAATTTCAATA 57.057 29.630 0.00 0.00 0.00 1.90
3953 4581 5.072040 TCAGTTTGATACGATTGCAGAGA 57.928 39.130 0.00 0.00 0.00 3.10
3954 4582 4.864806 TCAGTTTGATACGATTGCAGAGAC 59.135 41.667 0.00 0.00 0.00 3.36
3955 4583 4.627035 CAGTTTGATACGATTGCAGAGACA 59.373 41.667 0.00 0.00 0.00 3.41
3956 4584 4.627467 AGTTTGATACGATTGCAGAGACAC 59.373 41.667 0.00 0.00 0.00 3.67
3958 4586 3.511699 TGATACGATTGCAGAGACACAC 58.488 45.455 0.00 0.00 0.00 3.82
3960 4588 1.788258 ACGATTGCAGAGACACACTG 58.212 50.000 0.00 0.00 38.27 3.66
3961 4589 1.069204 ACGATTGCAGAGACACACTGT 59.931 47.619 0.00 0.00 37.64 3.55
3962 4590 2.138320 CGATTGCAGAGACACACTGTT 58.862 47.619 0.00 0.00 37.64 3.16
3963 4591 2.096565 CGATTGCAGAGACACACTGTTG 60.097 50.000 0.00 0.00 37.64 3.33
3964 4592 2.401583 TTGCAGAGACACACTGTTGT 57.598 45.000 0.00 0.00 37.64 3.32
3965 4593 3.535280 TTGCAGAGACACACTGTTGTA 57.465 42.857 0.00 0.00 37.64 2.41
3967 4595 4.071961 TGCAGAGACACACTGTTGTATT 57.928 40.909 0.00 0.00 37.64 1.89
3968 4596 4.450976 TGCAGAGACACACTGTTGTATTT 58.549 39.130 0.00 0.00 37.64 1.40
3969 4597 4.273235 TGCAGAGACACACTGTTGTATTTG 59.727 41.667 0.00 4.90 37.64 2.32
3970 4598 4.511454 GCAGAGACACACTGTTGTATTTGA 59.489 41.667 10.22 0.00 37.64 2.69
3971 4599 5.559035 GCAGAGACACACTGTTGTATTTGAC 60.559 44.000 10.22 2.55 37.64 3.18
3973 4601 5.986135 AGAGACACACTGTTGTATTTGACTC 59.014 40.000 0.00 0.00 33.30 3.36
3974 4602 5.918608 AGACACACTGTTGTATTTGACTCT 58.081 37.500 0.00 0.00 33.30 3.24
3975 4603 5.755375 AGACACACTGTTGTATTTGACTCTG 59.245 40.000 0.00 0.00 33.30 3.35
3977 4605 6.578944 ACACACTGTTGTATTTGACTCTGTA 58.421 36.000 0.00 0.00 33.30 2.74
3978 4606 6.701841 ACACACTGTTGTATTTGACTCTGTAG 59.298 38.462 0.00 0.00 33.30 2.74
3980 4608 6.924060 ACACTGTTGTATTTGACTCTGTAGTC 59.076 38.462 0.00 0.00 42.70 2.59
3981 4609 7.951333 ACACTGTTGTATTTGACTCTGTAGTCC 60.951 40.741 3.25 0.00 42.17 3.85
3993 4621 6.334102 ACTCTGTAGTCCAAAAGTACTCTG 57.666 41.667 0.00 0.00 35.20 3.35
3994 4622 5.135508 TCTGTAGTCCAAAAGTACTCTGC 57.864 43.478 0.00 0.00 35.20 4.26
3997 4625 4.587262 TGTAGTCCAAAAGTACTCTGCTCA 59.413 41.667 0.00 0.00 35.20 4.26
3998 4626 3.996480 AGTCCAAAAGTACTCTGCTCAC 58.004 45.455 0.00 0.00 0.00 3.51
4000 4628 3.743396 GTCCAAAAGTACTCTGCTCACTG 59.257 47.826 0.00 0.00 0.00 3.66
4001 4629 3.388024 TCCAAAAGTACTCTGCTCACTGT 59.612 43.478 0.00 0.00 0.00 3.55
4002 4630 4.130118 CCAAAAGTACTCTGCTCACTGTT 58.870 43.478 0.00 0.00 0.00 3.16
4003 4631 4.212214 CCAAAAGTACTCTGCTCACTGTTC 59.788 45.833 0.00 0.00 0.00 3.18
4004 4632 4.946478 AAAGTACTCTGCTCACTGTTCT 57.054 40.909 0.00 0.00 0.00 3.01
4005 4633 6.216569 CAAAAGTACTCTGCTCACTGTTCTA 58.783 40.000 0.00 0.00 0.00 2.10
4006 4634 5.379732 AAGTACTCTGCTCACTGTTCTAC 57.620 43.478 0.00 0.00 0.00 2.59
4007 4635 4.658063 AGTACTCTGCTCACTGTTCTACT 58.342 43.478 0.00 0.00 0.00 2.57
4008 4636 5.806818 AGTACTCTGCTCACTGTTCTACTA 58.193 41.667 0.00 0.00 0.00 1.82
4009 4637 6.419791 AGTACTCTGCTCACTGTTCTACTAT 58.580 40.000 0.00 0.00 0.00 2.12
4010 4638 5.574891 ACTCTGCTCACTGTTCTACTATG 57.425 43.478 0.00 0.00 0.00 2.23
4011 4639 4.142271 ACTCTGCTCACTGTTCTACTATGC 60.142 45.833 0.00 0.00 0.00 3.14
4012 4640 4.019858 TCTGCTCACTGTTCTACTATGCT 58.980 43.478 0.00 0.00 0.00 3.79
4114 4836 4.202245 TCTAATTTCCTCAACTGACCGG 57.798 45.455 0.00 0.00 0.00 5.28
4120 4842 0.951040 CCTCAACTGACCGGAACTGC 60.951 60.000 9.46 0.00 0.00 4.40
4615 5339 0.407528 TACCAATGGCTCTTTGGGCA 59.592 50.000 17.95 0.00 46.49 5.36
4701 5425 5.083122 TGAATTTCCATTCCCTGCAACTTA 58.917 37.500 0.00 0.00 38.50 2.24
4736 5460 8.289939 TCATGTACTCTCTCCGTTTAAGTAAT 57.710 34.615 0.00 0.00 0.00 1.89
4737 5461 8.746530 TCATGTACTCTCTCCGTTTAAGTAATT 58.253 33.333 0.00 0.00 0.00 1.40
4793 5519 8.921670 GTTTTAGTGTGTTTGTTCACTCATTTT 58.078 29.630 1.08 0.00 42.77 1.82
4860 5598 7.639062 ATGAATGAAGGGAGTATCATACCTT 57.361 36.000 0.00 0.00 45.50 3.50
5060 5803 5.356190 CCTGGATGCATATGGACATGATTAC 59.644 44.000 0.00 0.00 0.00 1.89
5191 5935 5.711976 ACTCCACCCTTCATAAATGAAACAG 59.288 40.000 6.82 1.97 45.26 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.224557 CCTTTGACTTTTGTTAGGAAATTGGTG 59.775 37.037 0.00 0.00 31.58 4.17
76 77 2.225117 ACCCTTGAGAAATTGGACAGGG 60.225 50.000 7.97 7.97 39.78 4.45
98 99 3.874543 GGTCAAACAATCAACAAAACCCC 59.125 43.478 0.00 0.00 0.00 4.95
116 117 8.028652 TGAATGGTGATATGTATACTTGGTCA 57.971 34.615 4.17 4.84 0.00 4.02
132 133 6.611613 AAGAGAAGTAGACATGAATGGTGA 57.388 37.500 0.00 0.00 0.00 4.02
185 186 6.939132 AGACTTTGCCATTCTTCTCATATG 57.061 37.500 0.00 0.00 0.00 1.78
187 188 7.187824 ACTAGACTTTGCCATTCTTCTCATA 57.812 36.000 0.00 0.00 0.00 2.15
190 191 6.809630 AAACTAGACTTTGCCATTCTTCTC 57.190 37.500 0.00 0.00 0.00 2.87
203 204 9.713713 GGTGAGAAGAATAAGAAAACTAGACTT 57.286 33.333 0.00 0.00 0.00 3.01
261 262 5.751243 AACATTTCCTGTCCGTATATTGC 57.249 39.130 0.00 0.00 36.98 3.56
269 270 4.562082 TGTGTAGTAACATTTCCTGTCCG 58.438 43.478 0.00 0.00 36.98 4.79
406 411 5.046591 TCAGGTCTTGTATTGTAGGAAGGTG 60.047 44.000 0.00 0.00 0.00 4.00
409 414 7.810282 CGATATCAGGTCTTGTATTGTAGGAAG 59.190 40.741 3.12 0.00 0.00 3.46
435 440 5.933790 TGCGGTATTAAACATGACACTTTC 58.066 37.500 0.00 0.00 0.00 2.62
441 446 8.440833 GGTATCTTATGCGGTATTAAACATGAC 58.559 37.037 0.00 0.00 0.00 3.06
471 476 1.923356 TCCCTTCTGTTGGCAAATCC 58.077 50.000 0.00 0.00 0.00 3.01
495 500 6.349300 TCCGGAAAAATCATTTTGTTGGAAA 58.651 32.000 0.00 0.00 38.83 3.13
508 514 6.630071 TGAGGAAAATTGATCCGGAAAAATC 58.370 36.000 9.01 1.00 42.03 2.17
514 520 4.568072 TCTTGAGGAAAATTGATCCGGA 57.432 40.909 6.61 6.61 42.03 5.14
516 522 6.690194 AAGATCTTGAGGAAAATTGATCCG 57.310 37.500 7.30 0.00 42.03 4.18
597 603 8.072567 GCAACTTGCTTATCTAACATGATTAGG 58.927 37.037 6.50 0.00 40.96 2.69
605 611 5.588648 GGTATGGCAACTTGCTTATCTAACA 59.411 40.000 13.43 1.12 44.28 2.41
633 639 1.574339 TGTTTGTAGGGGGTGGGAAAA 59.426 47.619 0.00 0.00 0.00 2.29
642 648 2.876581 AGCCTCTTTTGTTTGTAGGGG 58.123 47.619 0.00 0.00 32.43 4.79
698 708 3.561143 TCTTCTTGGCAAACCTAGCAAA 58.439 40.909 0.00 0.00 38.55 3.68
710 720 1.092345 GGCCGTCAGATCTTCTTGGC 61.092 60.000 13.93 13.93 36.50 4.52
714 724 3.289797 TCTGGCCGTCAGATCTTCT 57.710 52.632 0.00 0.00 46.71 2.85
721 731 1.026718 GGGTGATTTCTGGCCGTCAG 61.027 60.000 0.00 0.00 44.68 3.51
722 732 1.002624 GGGTGATTTCTGGCCGTCA 60.003 57.895 0.00 0.00 0.00 4.35
723 733 1.002624 TGGGTGATTTCTGGCCGTC 60.003 57.895 0.00 0.00 0.00 4.79
724 734 1.002134 CTGGGTGATTTCTGGCCGT 60.002 57.895 0.00 0.00 0.00 5.68
725 735 0.107017 ATCTGGGTGATTTCTGGCCG 60.107 55.000 0.00 0.00 29.59 6.13
726 736 1.341383 ACATCTGGGTGATTTCTGGCC 60.341 52.381 0.00 0.00 32.05 5.36
727 737 1.747355 CACATCTGGGTGATTTCTGGC 59.253 52.381 0.00 0.00 41.32 4.85
728 738 3.354948 TCACATCTGGGTGATTTCTGG 57.645 47.619 0.00 0.00 42.56 3.86
729 739 5.448225 CGATTTCACATCTGGGTGATTTCTG 60.448 44.000 0.00 0.00 46.37 3.02
730 740 4.637534 CGATTTCACATCTGGGTGATTTCT 59.362 41.667 0.00 0.00 46.37 2.52
731 741 4.635765 TCGATTTCACATCTGGGTGATTTC 59.364 41.667 0.00 0.00 46.37 2.17
732 742 4.588899 TCGATTTCACATCTGGGTGATTT 58.411 39.130 0.00 0.00 46.37 2.17
733 743 4.220693 TCGATTTCACATCTGGGTGATT 57.779 40.909 0.00 0.00 46.37 2.57
734 744 3.912496 TCGATTTCACATCTGGGTGAT 57.088 42.857 0.00 0.00 46.37 3.06
735 745 3.334691 GTTCGATTTCACATCTGGGTGA 58.665 45.455 0.00 0.00 45.54 4.02
736 746 2.094258 CGTTCGATTTCACATCTGGGTG 59.906 50.000 0.00 0.00 40.16 4.61
737 747 2.346803 CGTTCGATTTCACATCTGGGT 58.653 47.619 0.00 0.00 0.00 4.51
738 748 1.665679 CCGTTCGATTTCACATCTGGG 59.334 52.381 0.00 0.00 0.00 4.45
739 749 2.346803 ACCGTTCGATTTCACATCTGG 58.653 47.619 0.00 0.00 0.00 3.86
740 750 5.524511 TTAACCGTTCGATTTCACATCTG 57.475 39.130 0.00 0.00 0.00 2.90
741 751 6.548441 TTTTAACCGTTCGATTTCACATCT 57.452 33.333 0.00 0.00 0.00 2.90
742 752 7.059147 GTCTTTTTAACCGTTCGATTTCACATC 59.941 37.037 0.00 0.00 0.00 3.06
743 753 6.854381 GTCTTTTTAACCGTTCGATTTCACAT 59.146 34.615 0.00 0.00 0.00 3.21
744 754 6.037391 AGTCTTTTTAACCGTTCGATTTCACA 59.963 34.615 0.00 0.00 0.00 3.58
745 755 6.356190 CAGTCTTTTTAACCGTTCGATTTCAC 59.644 38.462 0.00 0.00 0.00 3.18
746 756 6.258287 TCAGTCTTTTTAACCGTTCGATTTCA 59.742 34.615 0.00 0.00 0.00 2.69
747 757 6.652245 TCAGTCTTTTTAACCGTTCGATTTC 58.348 36.000 0.00 0.00 0.00 2.17
748 758 6.607735 TCAGTCTTTTTAACCGTTCGATTT 57.392 33.333 0.00 0.00 0.00 2.17
749 759 6.796705 ATCAGTCTTTTTAACCGTTCGATT 57.203 33.333 0.00 0.00 0.00 3.34
750 760 6.534079 CCTATCAGTCTTTTTAACCGTTCGAT 59.466 38.462 0.00 0.00 0.00 3.59
751 761 5.865552 CCTATCAGTCTTTTTAACCGTTCGA 59.134 40.000 0.00 0.00 0.00 3.71
752 762 5.063060 CCCTATCAGTCTTTTTAACCGTTCG 59.937 44.000 0.00 0.00 0.00 3.95
753 763 5.936372 ACCCTATCAGTCTTTTTAACCGTTC 59.064 40.000 0.00 0.00 0.00 3.95
754 764 5.704053 CACCCTATCAGTCTTTTTAACCGTT 59.296 40.000 0.00 0.00 0.00 4.44
755 765 5.012354 TCACCCTATCAGTCTTTTTAACCGT 59.988 40.000 0.00 0.00 0.00 4.83
756 766 5.484715 TCACCCTATCAGTCTTTTTAACCG 58.515 41.667 0.00 0.00 0.00 4.44
757 767 6.708285 TCTCACCCTATCAGTCTTTTTAACC 58.292 40.000 0.00 0.00 0.00 2.85
758 768 6.819146 CCTCTCACCCTATCAGTCTTTTTAAC 59.181 42.308 0.00 0.00 0.00 2.01
759 769 6.070194 CCCTCTCACCCTATCAGTCTTTTTAA 60.070 42.308 0.00 0.00 0.00 1.52
760 770 5.425539 CCCTCTCACCCTATCAGTCTTTTTA 59.574 44.000 0.00 0.00 0.00 1.52
761 771 4.226168 CCCTCTCACCCTATCAGTCTTTTT 59.774 45.833 0.00 0.00 0.00 1.94
762 772 3.777522 CCCTCTCACCCTATCAGTCTTTT 59.222 47.826 0.00 0.00 0.00 2.27
763 773 3.379452 CCCTCTCACCCTATCAGTCTTT 58.621 50.000 0.00 0.00 0.00 2.52
764 774 2.957312 GCCCTCTCACCCTATCAGTCTT 60.957 54.545 0.00 0.00 0.00 3.01
765 775 1.412361 GCCCTCTCACCCTATCAGTCT 60.412 57.143 0.00 0.00 0.00 3.24
766 776 1.044611 GCCCTCTCACCCTATCAGTC 58.955 60.000 0.00 0.00 0.00 3.51
767 777 0.639392 AGCCCTCTCACCCTATCAGT 59.361 55.000 0.00 0.00 0.00 3.41
768 778 1.337118 GAGCCCTCTCACCCTATCAG 58.663 60.000 0.00 0.00 39.16 2.90
769 779 0.468214 CGAGCCCTCTCACCCTATCA 60.468 60.000 0.00 0.00 39.30 2.15
770 780 1.811645 GCGAGCCCTCTCACCCTATC 61.812 65.000 0.00 0.00 39.30 2.08
771 781 1.834822 GCGAGCCCTCTCACCCTAT 60.835 63.158 0.00 0.00 39.30 2.57
772 782 2.442272 GCGAGCCCTCTCACCCTA 60.442 66.667 0.00 0.00 39.30 3.53
773 783 3.914551 AAGCGAGCCCTCTCACCCT 62.915 63.158 0.00 0.00 39.30 4.34
774 784 1.614241 TAAAGCGAGCCCTCTCACCC 61.614 60.000 0.00 0.00 39.30 4.61
775 785 0.179097 CTAAAGCGAGCCCTCTCACC 60.179 60.000 0.00 0.00 39.30 4.02
776 786 0.179097 CCTAAAGCGAGCCCTCTCAC 60.179 60.000 0.00 0.00 39.30 3.51
777 787 1.961180 GCCTAAAGCGAGCCCTCTCA 61.961 60.000 0.00 0.00 39.30 3.27
778 788 1.227409 GCCTAAAGCGAGCCCTCTC 60.227 63.158 0.00 0.00 35.99 3.20
779 789 2.904131 GCCTAAAGCGAGCCCTCT 59.096 61.111 0.00 0.00 0.00 3.69
818 828 8.062065 TCTAAACTGAGCCTTTTTCTCAAAAA 57.938 30.769 0.00 0.00 39.77 1.94
819 829 7.639113 TCTAAACTGAGCCTTTTTCTCAAAA 57.361 32.000 0.00 0.00 39.77 2.44
820 830 7.651808 CATCTAAACTGAGCCTTTTTCTCAAA 58.348 34.615 0.00 0.00 39.77 2.69
821 831 6.294176 GCATCTAAACTGAGCCTTTTTCTCAA 60.294 38.462 0.00 0.00 39.77 3.02
822 832 5.182001 GCATCTAAACTGAGCCTTTTTCTCA 59.818 40.000 0.00 0.00 38.16 3.27
823 833 5.414144 AGCATCTAAACTGAGCCTTTTTCTC 59.586 40.000 0.00 0.00 0.00 2.87
824 834 5.320277 AGCATCTAAACTGAGCCTTTTTCT 58.680 37.500 0.00 0.00 0.00 2.52
825 835 5.635417 AGCATCTAAACTGAGCCTTTTTC 57.365 39.130 0.00 0.00 0.00 2.29
826 836 5.635417 GAGCATCTAAACTGAGCCTTTTT 57.365 39.130 0.00 0.00 0.00 1.94
889 899 1.208535 GTGTGTATCCGGTTGATGGGA 59.791 52.381 0.00 0.00 34.76 4.37
1162 1178 1.993370 CGAAATCCACGACAGTTCCTC 59.007 52.381 0.00 0.00 0.00 3.71
1433 1450 3.120321 ACACTAAATGTTCCACGCAGA 57.880 42.857 0.00 0.00 38.98 4.26
1541 1558 7.777910 CCCACCATAAATGACTAGAAACCATAA 59.222 37.037 0.00 0.00 0.00 1.90
1543 1560 6.069088 TCCCACCATAAATGACTAGAAACCAT 60.069 38.462 0.00 0.00 0.00 3.55
1544 1561 5.251932 TCCCACCATAAATGACTAGAAACCA 59.748 40.000 0.00 0.00 0.00 3.67
1545 1562 5.751586 TCCCACCATAAATGACTAGAAACC 58.248 41.667 0.00 0.00 0.00 3.27
1547 1564 8.893563 AATTTCCCACCATAAATGACTAGAAA 57.106 30.769 0.00 0.00 0.00 2.52
1548 1565 8.748412 CAAATTTCCCACCATAAATGACTAGAA 58.252 33.333 0.00 0.00 0.00 2.10
1549 1566 8.112822 TCAAATTTCCCACCATAAATGACTAGA 58.887 33.333 0.00 0.00 0.00 2.43
1550 1567 8.292444 TCAAATTTCCCACCATAAATGACTAG 57.708 34.615 0.00 0.00 0.00 2.57
1593 1631 0.183492 GTTCATAGCATGGGCAGGGA 59.817 55.000 0.00 0.00 44.61 4.20
1771 1822 7.751732 TCTTGTGATCAAAATATCCAAGAACG 58.248 34.615 16.14 0.00 38.63 3.95
1948 1999 2.890311 CAGCCACTTACACAATTCCCAA 59.110 45.455 0.00 0.00 0.00 4.12
2253 2304 6.479001 TCAAAGTAGAGAAAAAGAAGTCACGG 59.521 38.462 0.00 0.00 0.00 4.94
2733 3070 0.944311 GACTGACCACAATCGCACGT 60.944 55.000 0.00 0.00 0.00 4.49
2834 3171 4.562757 CGAGGAGGTCATGTGGTAAAAAGA 60.563 45.833 0.00 0.00 0.00 2.52
2835 3172 3.684788 CGAGGAGGTCATGTGGTAAAAAG 59.315 47.826 0.00 0.00 0.00 2.27
3107 3444 8.734386 GTGGTTAATTTGAACAGATCAGAAGAT 58.266 33.333 0.00 0.00 39.77 2.40
3108 3445 7.939039 AGTGGTTAATTTGAACAGATCAGAAGA 59.061 33.333 0.00 0.00 39.77 2.87
3109 3446 8.103948 AGTGGTTAATTTGAACAGATCAGAAG 57.896 34.615 0.00 0.00 39.77 2.85
3110 3447 8.999431 GTAGTGGTTAATTTGAACAGATCAGAA 58.001 33.333 0.00 0.00 39.77 3.02
3111 3448 7.606456 GGTAGTGGTTAATTTGAACAGATCAGA 59.394 37.037 0.00 0.00 39.77 3.27
3112 3449 7.390440 TGGTAGTGGTTAATTTGAACAGATCAG 59.610 37.037 0.00 0.00 39.77 2.90
3113 3450 7.174253 GTGGTAGTGGTTAATTTGAACAGATCA 59.826 37.037 0.00 0.00 35.85 2.92
3114 3451 7.174253 TGTGGTAGTGGTTAATTTGAACAGATC 59.826 37.037 0.00 0.00 0.00 2.75
3115 3452 7.001674 TGTGGTAGTGGTTAATTTGAACAGAT 58.998 34.615 0.00 0.00 0.00 2.90
3116 3453 6.358178 TGTGGTAGTGGTTAATTTGAACAGA 58.642 36.000 0.00 0.00 0.00 3.41
3117 3454 6.627395 TGTGGTAGTGGTTAATTTGAACAG 57.373 37.500 0.00 0.00 0.00 3.16
3118 3455 5.009210 GCTGTGGTAGTGGTTAATTTGAACA 59.991 40.000 0.00 0.00 0.00 3.18
3119 3456 5.009210 TGCTGTGGTAGTGGTTAATTTGAAC 59.991 40.000 0.00 0.00 0.00 3.18
3120 3457 5.009210 GTGCTGTGGTAGTGGTTAATTTGAA 59.991 40.000 0.00 0.00 0.00 2.69
3121 3458 4.517453 GTGCTGTGGTAGTGGTTAATTTGA 59.483 41.667 0.00 0.00 0.00 2.69
3122 3459 4.320935 GGTGCTGTGGTAGTGGTTAATTTG 60.321 45.833 0.00 0.00 0.00 2.32
3123 3460 3.824443 GGTGCTGTGGTAGTGGTTAATTT 59.176 43.478 0.00 0.00 0.00 1.82
3124 3461 3.418047 GGTGCTGTGGTAGTGGTTAATT 58.582 45.455 0.00 0.00 0.00 1.40
3125 3462 2.290705 GGGTGCTGTGGTAGTGGTTAAT 60.291 50.000 0.00 0.00 0.00 1.40
3126 3463 1.072648 GGGTGCTGTGGTAGTGGTTAA 59.927 52.381 0.00 0.00 0.00 2.01
3127 3464 0.688487 GGGTGCTGTGGTAGTGGTTA 59.312 55.000 0.00 0.00 0.00 2.85
3128 3465 1.454539 GGGTGCTGTGGTAGTGGTT 59.545 57.895 0.00 0.00 0.00 3.67
3129 3466 2.526046 GGGGTGCTGTGGTAGTGGT 61.526 63.158 0.00 0.00 0.00 4.16
3130 3467 2.351276 GGGGTGCTGTGGTAGTGG 59.649 66.667 0.00 0.00 0.00 4.00
3131 3468 2.351276 GGGGGTGCTGTGGTAGTG 59.649 66.667 0.00 0.00 0.00 2.74
3151 3488 4.885270 TGTGTGTGTTGGGGGCCG 62.885 66.667 0.00 0.00 0.00 6.13
3152 3489 3.223589 GTGTGTGTGTTGGGGGCC 61.224 66.667 0.00 0.00 0.00 5.80
3153 3490 2.441164 TGTGTGTGTGTTGGGGGC 60.441 61.111 0.00 0.00 0.00 5.80
3154 3491 1.379176 TGTGTGTGTGTGTTGGGGG 60.379 57.895 0.00 0.00 0.00 5.40
3155 3492 0.962855 TGTGTGTGTGTGTGTTGGGG 60.963 55.000 0.00 0.00 0.00 4.96
3156 3493 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.000 0.00 0.00 0.00 4.12
3157 3494 0.877743 TGTGTGTGTGTGTGTGTTGG 59.122 50.000 0.00 0.00 0.00 3.77
3158 3495 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
3159 3496 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
3160 3497 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3161 3498 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3162 3499 1.295357 CCGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
3163 3500 1.016653 TCCGTGTGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 0.00 3.82
3164 3501 1.017177 GTCCGTGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 0.00 3.72
3165 3502 1.016653 TGTCCGTGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 0.00 3.82
3166 3503 1.017177 GTGTCCGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 0.00 3.72
3167 3504 1.016653 TGTGTCCGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 0.00 3.82
3168 3505 0.320858 TTGTGTCCGTGTGTGTGTGT 60.321 50.000 0.00 0.00 0.00 3.72
3169 3506 0.799393 TTTGTGTCCGTGTGTGTGTG 59.201 50.000 0.00 0.00 0.00 3.82
3170 3507 1.524848 TTTTGTGTCCGTGTGTGTGT 58.475 45.000 0.00 0.00 0.00 3.72
3171 3508 2.160615 TCTTTTTGTGTCCGTGTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
3172 3509 2.428491 TCTTTTTGTGTCCGTGTGTGT 58.572 42.857 0.00 0.00 0.00 3.72
3173 3510 3.479505 TTCTTTTTGTGTCCGTGTGTG 57.520 42.857 0.00 0.00 0.00 3.82
3174 3511 4.439563 GGAATTCTTTTTGTGTCCGTGTGT 60.440 41.667 5.23 0.00 0.00 3.72
3175 3512 4.041723 GGAATTCTTTTTGTGTCCGTGTG 58.958 43.478 5.23 0.00 0.00 3.82
3176 3513 3.697045 TGGAATTCTTTTTGTGTCCGTGT 59.303 39.130 5.23 0.00 0.00 4.49
3177 3514 4.202010 ACTGGAATTCTTTTTGTGTCCGTG 60.202 41.667 5.23 0.00 0.00 4.94
3178 3515 3.951680 ACTGGAATTCTTTTTGTGTCCGT 59.048 39.130 5.23 0.00 0.00 4.69
3179 3516 4.568152 ACTGGAATTCTTTTTGTGTCCG 57.432 40.909 5.23 0.00 0.00 4.79
3180 3517 7.272037 TCTTACTGGAATTCTTTTTGTGTCC 57.728 36.000 5.23 0.00 0.00 4.02
3216 3823 0.872388 CCGGCCCAAAATATCGTAGC 59.128 55.000 0.00 0.00 0.00 3.58
3220 3827 0.889186 CTCCCCGGCCCAAAATATCG 60.889 60.000 0.00 0.00 0.00 2.92
3225 3832 2.758434 GTACTCCCCGGCCCAAAA 59.242 61.111 0.00 0.00 0.00 2.44
3227 3834 3.876255 AAGGTACTCCCCGGCCCAA 62.876 63.158 0.00 0.00 38.49 4.12
3229 3836 2.547640 GAAAAGGTACTCCCCGGCCC 62.548 65.000 0.00 0.00 38.49 5.80
3230 3837 1.077930 GAAAAGGTACTCCCCGGCC 60.078 63.158 0.00 0.00 38.49 6.13
3231 3838 0.392595 CAGAAAAGGTACTCCCCGGC 60.393 60.000 0.00 0.00 38.49 6.13
3232 3839 1.272807 TCAGAAAAGGTACTCCCCGG 58.727 55.000 0.00 0.00 38.49 5.73
3233 3840 3.055385 TCAATCAGAAAAGGTACTCCCCG 60.055 47.826 0.00 0.00 38.49 5.73
3234 3841 4.569719 TCAATCAGAAAAGGTACTCCCC 57.430 45.455 0.00 0.00 38.49 4.81
3235 3842 6.625960 GCAAATCAATCAGAAAAGGTACTCCC 60.626 42.308 0.00 0.00 38.49 4.30
3238 3845 7.014615 ACTTGCAAATCAATCAGAAAAGGTACT 59.985 33.333 0.00 0.00 34.82 2.73
3320 3948 4.443978 ACTGATCTCAAATACCCATGGG 57.556 45.455 30.23 30.23 42.03 4.00
3390 4018 4.016444 TGACCAGGATTAGCAAACATTCC 58.984 43.478 0.00 0.00 0.00 3.01
3482 4110 9.793259 ATTAACCTCACTAAAACTGAGAATTGA 57.207 29.630 0.00 0.00 37.90 2.57
3750 4378 6.202954 GCTACAGAGTCAAATACAACAGTGTT 59.797 38.462 1.64 1.64 39.30 3.32
3755 4383 4.041075 TGGGCTACAGAGTCAAATACAACA 59.959 41.667 0.00 0.00 0.00 3.33
3801 4429 8.763984 TGTTAAGTTTGGTAAGACCCAATTAA 57.236 30.769 0.00 0.00 43.77 1.40
3802 4430 8.943594 ATGTTAAGTTTGGTAAGACCCAATTA 57.056 30.769 0.00 0.00 43.77 1.40
3841 4469 9.919416 TTTCTTATCCATTAGATCAACATCCAA 57.081 29.630 0.00 0.00 36.33 3.53
3846 4474 9.904198 TCACATTTCTTATCCATTAGATCAACA 57.096 29.630 0.00 0.00 36.33 3.33
3849 4477 9.551734 CAGTCACATTTCTTATCCATTAGATCA 57.448 33.333 0.00 0.00 36.33 2.92
3850 4478 8.997323 CCAGTCACATTTCTTATCCATTAGATC 58.003 37.037 0.00 0.00 36.33 2.75
3851 4479 7.941238 CCCAGTCACATTTCTTATCCATTAGAT 59.059 37.037 0.00 0.00 39.15 1.98
3853 4481 7.282585 TCCCAGTCACATTTCTTATCCATTAG 58.717 38.462 0.00 0.00 0.00 1.73
3855 4483 6.078456 TCCCAGTCACATTTCTTATCCATT 57.922 37.500 0.00 0.00 0.00 3.16
3856 4484 5.715439 TCCCAGTCACATTTCTTATCCAT 57.285 39.130 0.00 0.00 0.00 3.41
3857 4485 5.715439 ATCCCAGTCACATTTCTTATCCA 57.285 39.130 0.00 0.00 0.00 3.41
3858 4486 9.220767 GTTATATCCCAGTCACATTTCTTATCC 57.779 37.037 0.00 0.00 0.00 2.59
3859 4487 9.778741 TGTTATATCCCAGTCACATTTCTTATC 57.221 33.333 0.00 0.00 0.00 1.75
3861 4489 9.967451 TTTGTTATATCCCAGTCACATTTCTTA 57.033 29.630 0.00 0.00 0.00 2.10
3862 4490 8.877864 TTTGTTATATCCCAGTCACATTTCTT 57.122 30.769 0.00 0.00 0.00 2.52
3863 4491 8.877864 TTTTGTTATATCCCAGTCACATTTCT 57.122 30.769 0.00 0.00 0.00 2.52
3887 4515 7.506114 TGTCTAGTCACACCTTACTTGATTTT 58.494 34.615 0.00 0.00 31.78 1.82
3888 4516 7.062749 TGTCTAGTCACACCTTACTTGATTT 57.937 36.000 0.00 0.00 31.78 2.17
3889 4517 6.665992 TGTCTAGTCACACCTTACTTGATT 57.334 37.500 0.00 0.00 31.78 2.57
3891 4519 6.493802 AGATTGTCTAGTCACACCTTACTTGA 59.506 38.462 0.00 0.00 0.00 3.02
3892 4520 6.692486 AGATTGTCTAGTCACACCTTACTTG 58.308 40.000 0.00 0.00 0.00 3.16
3893 4521 6.493802 TGAGATTGTCTAGTCACACCTTACTT 59.506 38.462 0.00 0.00 0.00 2.24
3894 4522 6.010850 TGAGATTGTCTAGTCACACCTTACT 58.989 40.000 0.00 0.00 0.00 2.24
3895 4523 6.268825 TGAGATTGTCTAGTCACACCTTAC 57.731 41.667 0.00 0.00 0.00 2.34
3896 4524 6.911250 TTGAGATTGTCTAGTCACACCTTA 57.089 37.500 0.00 0.00 0.00 2.69
3897 4525 5.808366 TTGAGATTGTCTAGTCACACCTT 57.192 39.130 0.00 0.00 0.00 3.50
3898 4526 6.365970 AATTGAGATTGTCTAGTCACACCT 57.634 37.500 0.00 0.00 0.00 4.00
3900 4528 7.658179 TGAAATTGAGATTGTCTAGTCACAC 57.342 36.000 0.00 0.00 0.00 3.82
3925 4553 9.710900 TCTGCAATCGTATCAAACTGAATATAT 57.289 29.630 0.00 0.00 0.00 0.86
3926 4554 9.196552 CTCTGCAATCGTATCAAACTGAATATA 57.803 33.333 0.00 0.00 0.00 0.86
3927 4555 7.928167 TCTCTGCAATCGTATCAAACTGAATAT 59.072 33.333 0.00 0.00 0.00 1.28
3928 4556 7.222805 GTCTCTGCAATCGTATCAAACTGAATA 59.777 37.037 0.00 0.00 0.00 1.75
3929 4557 6.036517 GTCTCTGCAATCGTATCAAACTGAAT 59.963 38.462 0.00 0.00 0.00 2.57
3930 4558 5.348724 GTCTCTGCAATCGTATCAAACTGAA 59.651 40.000 0.00 0.00 0.00 3.02
3931 4559 4.864806 GTCTCTGCAATCGTATCAAACTGA 59.135 41.667 0.00 0.00 0.00 3.41
3932 4560 4.627035 TGTCTCTGCAATCGTATCAAACTG 59.373 41.667 0.00 0.00 0.00 3.16
3934 4562 4.388773 TGTGTCTCTGCAATCGTATCAAAC 59.611 41.667 0.00 0.00 0.00 2.93
3936 4564 3.926527 GTGTGTCTCTGCAATCGTATCAA 59.073 43.478 0.00 0.00 0.00 2.57
3939 4567 3.056536 ACAGTGTGTCTCTGCAATCGTAT 60.057 43.478 0.00 0.00 36.50 3.06
3940 4568 2.296190 ACAGTGTGTCTCTGCAATCGTA 59.704 45.455 0.00 0.00 36.50 3.43
3941 4569 1.069204 ACAGTGTGTCTCTGCAATCGT 59.931 47.619 0.00 0.00 36.50 3.73
3942 4570 1.788258 ACAGTGTGTCTCTGCAATCG 58.212 50.000 0.00 0.00 36.50 3.34
3943 4571 2.874701 ACAACAGTGTGTCTCTGCAATC 59.125 45.455 0.00 0.00 36.31 2.67
3944 4572 2.923121 ACAACAGTGTGTCTCTGCAAT 58.077 42.857 0.00 0.00 36.31 3.56
3946 4574 3.751479 ATACAACAGTGTGTCTCTGCA 57.249 42.857 0.00 0.00 38.82 4.41
3947 4575 4.511454 TCAAATACAACAGTGTGTCTCTGC 59.489 41.667 0.00 0.00 38.82 4.26
3948 4576 5.755375 AGTCAAATACAACAGTGTGTCTCTG 59.245 40.000 0.00 0.00 38.82 3.35
3949 4577 5.918608 AGTCAAATACAACAGTGTGTCTCT 58.081 37.500 0.00 0.00 38.82 3.10
3950 4578 5.986135 AGAGTCAAATACAACAGTGTGTCTC 59.014 40.000 0.00 0.00 38.82 3.36
3953 4581 5.428253 ACAGAGTCAAATACAACAGTGTGT 58.572 37.500 0.00 0.00 38.82 3.72
3954 4582 5.991328 ACAGAGTCAAATACAACAGTGTG 57.009 39.130 0.00 0.00 38.82 3.82
3955 4583 6.817184 ACTACAGAGTCAAATACAACAGTGT 58.183 36.000 0.00 0.00 42.09 3.55
3970 4598 5.279056 GCAGAGTACTTTTGGACTACAGAGT 60.279 44.000 0.00 0.00 39.20 3.24
3971 4599 5.047660 AGCAGAGTACTTTTGGACTACAGAG 60.048 44.000 0.00 0.00 0.00 3.35
3973 4601 5.140747 AGCAGAGTACTTTTGGACTACAG 57.859 43.478 0.00 0.00 0.00 2.74
3974 4602 4.587262 TGAGCAGAGTACTTTTGGACTACA 59.413 41.667 0.00 0.00 0.00 2.74
3975 4603 4.924462 GTGAGCAGAGTACTTTTGGACTAC 59.076 45.833 0.00 0.00 0.00 2.73
3977 4605 3.643792 AGTGAGCAGAGTACTTTTGGACT 59.356 43.478 0.00 0.00 0.00 3.85
3978 4606 3.743396 CAGTGAGCAGAGTACTTTTGGAC 59.257 47.826 0.00 0.00 0.00 4.02
3980 4608 3.733337 ACAGTGAGCAGAGTACTTTTGG 58.267 45.455 0.00 0.00 0.00 3.28
3981 4609 5.053145 AGAACAGTGAGCAGAGTACTTTTG 58.947 41.667 0.00 0.07 0.00 2.44
3982 4610 5.283457 AGAACAGTGAGCAGAGTACTTTT 57.717 39.130 0.00 0.00 0.00 2.27
3983 4611 4.946478 AGAACAGTGAGCAGAGTACTTT 57.054 40.909 0.00 0.00 0.00 2.66
3985 4613 4.658063 AGTAGAACAGTGAGCAGAGTACT 58.342 43.478 0.00 0.00 0.00 2.73
3986 4614 6.491394 CATAGTAGAACAGTGAGCAGAGTAC 58.509 44.000 0.00 0.00 0.00 2.73
3988 4616 4.142271 GCATAGTAGAACAGTGAGCAGAGT 60.142 45.833 0.00 0.00 0.00 3.24
3989 4617 4.097741 AGCATAGTAGAACAGTGAGCAGAG 59.902 45.833 0.00 0.00 0.00 3.35
3990 4618 4.019858 AGCATAGTAGAACAGTGAGCAGA 58.980 43.478 0.00 0.00 0.00 4.26
3991 4619 4.383850 AGCATAGTAGAACAGTGAGCAG 57.616 45.455 0.00 0.00 0.00 4.24
3993 4621 4.932200 ACAAAGCATAGTAGAACAGTGAGC 59.068 41.667 0.00 0.00 0.00 4.26
3994 4622 6.159293 TCACAAAGCATAGTAGAACAGTGAG 58.841 40.000 0.00 0.00 0.00 3.51
4006 4634 7.201758 TGAATATTCAAGGCTCACAAAGCATAG 60.202 37.037 15.82 0.00 46.19 2.23
4007 4635 6.602803 TGAATATTCAAGGCTCACAAAGCATA 59.397 34.615 15.82 0.00 46.19 3.14
4009 4637 4.766373 TGAATATTCAAGGCTCACAAAGCA 59.234 37.500 15.82 0.00 42.91 3.91
4010 4638 5.314923 TGAATATTCAAGGCTCACAAAGC 57.685 39.130 15.82 0.00 41.48 3.51
4011 4639 7.147312 TGTTTGAATATTCAAGGCTCACAAAG 58.853 34.615 25.58 0.00 46.68 2.77
4012 4640 7.048629 TGTTTGAATATTCAAGGCTCACAAA 57.951 32.000 25.58 9.50 46.68 2.83
4114 4836 1.334869 CAAAGTGACCACCTGCAGTTC 59.665 52.381 13.81 4.05 0.00 3.01
4120 4842 1.903404 GCCCCAAAGTGACCACCTG 60.903 63.158 0.00 0.00 0.00 4.00
4187 4909 2.173669 GCTTAGCTTCATCGCGGCA 61.174 57.895 6.13 0.00 34.40 5.69
4597 5321 0.252375 ATGCCCAAAGAGCCATTGGT 60.252 50.000 4.26 0.00 44.77 3.67
4615 5339 9.635284 TTCTCCCATATTTATTCTTCCTAGGAT 57.365 33.333 13.57 0.00 0.00 3.24
4652 5376 1.625818 ACTCTCACACCAAGTCCCATC 59.374 52.381 0.00 0.00 0.00 3.51
4657 5381 2.910688 TGGAACTCTCACACCAAGTC 57.089 50.000 0.00 0.00 0.00 3.01
4701 5425 6.878923 CGGAGAGAGTACATGATTAGAGAGAT 59.121 42.308 0.00 0.00 0.00 2.75
4766 5491 6.561737 TGAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 45.54 2.83
4836 5570 7.639062 AAGGTATGATACTCCCTTCATTCAT 57.361 36.000 2.24 0.00 31.73 2.57
4856 5594 7.793036 AGAGGCTTATATTTAGAAACGAAGGT 58.207 34.615 0.00 0.00 0.00 3.50
4979 5717 9.333724 TCCGTTCCTAAATATAAGCCTTTTTAG 57.666 33.333 1.71 1.71 33.47 1.85
5191 5935 4.829064 TTGTATCACTCAAAACTGTGGC 57.171 40.909 0.00 0.00 35.15 5.01
5345 6100 7.660208 TCCAGATGAATTGTATCATGTCATGAG 59.340 37.037 19.86 2.75 43.53 2.90
5346 6101 7.443272 GTCCAGATGAATTGTATCATGTCATGA 59.557 37.037 17.70 17.70 40.08 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.