Multiple sequence alignment - TraesCS2A01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G278000 chr2A 100.000 7712 0 0 1 7712 460909143 460901432 0.000000e+00 14242.0
1 TraesCS2A01G278000 chr2A 97.849 186 2 2 5151 5336 460903785 460903602 3.470000e-83 320.0
2 TraesCS2A01G278000 chr2A 97.849 186 2 2 5359 5542 460903993 460903808 3.470000e-83 320.0
3 TraesCS2A01G278000 chr2B 94.548 4916 161 41 64 4934 412409277 412404424 0.000000e+00 7494.0
4 TraesCS2A01G278000 chr2B 91.955 1069 37 24 6666 7712 412402446 412401405 0.000000e+00 1452.0
5 TraesCS2A01G278000 chr2B 94.917 905 22 4 5359 6261 412403608 412402726 0.000000e+00 1395.0
6 TraesCS2A01G278000 chr2B 92.746 193 10 4 5146 5336 412403613 412403423 7.620000e-70 276.0
7 TraesCS2A01G278000 chr2D 94.442 3940 100 50 4 3880 346585399 346581516 0.000000e+00 5952.0
8 TraesCS2A01G278000 chr2D 94.741 1217 25 15 5362 6541 346579227 346578013 0.000000e+00 1857.0
9 TraesCS2A01G278000 chr2D 94.585 1182 34 17 6543 7712 346577773 346576610 0.000000e+00 1801.0
10 TraesCS2A01G278000 chr2D 94.444 1188 37 8 3760 4934 346581518 346580347 0.000000e+00 1801.0
11 TraesCS2A01G278000 chr2D 93.434 198 10 3 5140 5336 346579241 346579046 2.720000e-74 291.0
12 TraesCS2A01G278000 chr2D 97.561 41 1 0 4938 4978 346580279 346580239 3.860000e-08 71.3
13 TraesCS2A01G278000 chr7D 90.526 760 66 4 6958 7712 91678514 91679272 0.000000e+00 1000.0
14 TraesCS2A01G278000 chr7A 89.804 765 68 10 6956 7712 93251287 93252049 0.000000e+00 972.0
15 TraesCS2A01G278000 chr7B 89.737 760 72 4 6958 7712 43250146 43249388 0.000000e+00 966.0
16 TraesCS2A01G278000 chr5D 85.116 692 91 4 7033 7712 543586044 543586735 0.000000e+00 697.0
17 TraesCS2A01G278000 chr5A 91.821 379 31 0 7334 7712 9593204 9593582 5.300000e-146 529.0
18 TraesCS2A01G278000 chr5A 85.677 384 44 7 6958 7330 9589856 9590239 2.020000e-105 394.0
19 TraesCS2A01G278000 chr5A 96.429 168 5 1 4980 5147 698500800 698500634 7.620000e-70 276.0
20 TraesCS2A01G278000 chr1D 97.605 167 4 0 4976 5142 37883900 37884066 3.520000e-73 287.0
21 TraesCS2A01G278000 chr1D 93.407 182 10 1 4978 5157 121624624 121624443 1.280000e-67 268.0
22 TraesCS2A01G278000 chr3A 97.576 165 4 0 4978 5142 725121669 725121505 4.560000e-72 283.0
23 TraesCS2A01G278000 chr3D 96.491 171 5 1 4971 5141 410670055 410670224 1.640000e-71 281.0
24 TraesCS2A01G278000 chr3D 93.889 180 9 2 4969 5148 528190693 528190516 3.550000e-68 270.0
25 TraesCS2A01G278000 chr3D 94.798 173 8 1 4970 5141 238999403 238999575 1.280000e-67 268.0
26 TraesCS2A01G278000 chr6D 93.889 180 9 2 4968 5145 428047043 428047222 3.550000e-68 270.0
27 TraesCS2A01G278000 chr3B 93.889 180 8 3 4968 5145 410043715 410043893 1.280000e-67 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G278000 chr2A 460901432 460909143 7711 True 14242.000000 14242 100.000000 1 7712 1 chr2A.!!$R1 7711
1 TraesCS2A01G278000 chr2B 412401405 412409277 7872 True 2654.250000 7494 93.541500 64 7712 4 chr2B.!!$R1 7648
2 TraesCS2A01G278000 chr2D 346576610 346585399 8789 True 1962.216667 5952 94.867833 4 7712 6 chr2D.!!$R1 7708
3 TraesCS2A01G278000 chr7D 91678514 91679272 758 False 1000.000000 1000 90.526000 6958 7712 1 chr7D.!!$F1 754
4 TraesCS2A01G278000 chr7A 93251287 93252049 762 False 972.000000 972 89.804000 6956 7712 1 chr7A.!!$F1 756
5 TraesCS2A01G278000 chr7B 43249388 43250146 758 True 966.000000 966 89.737000 6958 7712 1 chr7B.!!$R1 754
6 TraesCS2A01G278000 chr5D 543586044 543586735 691 False 697.000000 697 85.116000 7033 7712 1 chr5D.!!$F1 679
7 TraesCS2A01G278000 chr5A 9589856 9593582 3726 False 461.500000 529 88.749000 6958 7712 2 chr5A.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 659 0.034476 AGATCACCATCGCATCGCAT 59.966 50.000 0.00 0.00 33.75 4.73 F
688 745 0.249120 TGGATCAGTGTTACTGGCCG 59.751 55.000 8.91 0.00 45.94 6.13 F
1388 1459 0.335019 GGGGGCCTTAGAATGTTGGT 59.665 55.000 0.84 0.00 0.00 3.67 F
2070 2141 0.541863 CTCCCCCTGTACCACATGAC 59.458 60.000 0.00 0.00 0.00 3.06 F
2988 3063 1.142870 AGTTAGAAGCCACAAGGTGCA 59.857 47.619 0.00 0.00 37.19 4.57 F
4236 4447 0.038892 TTCGTTACTGTGAGGACGCC 60.039 55.000 0.00 0.00 35.63 5.68 F
4393 4605 0.319405 GCTGCTGGCTTGGTCATTTT 59.681 50.000 0.00 0.00 38.06 1.82 F
5230 5528 0.032952 CACTGCTTGCCACTTTGCAT 59.967 50.000 0.00 0.00 41.70 3.96 F
5782 7112 0.459078 GAGAGGCCGTGGTAGTTACC 59.541 60.000 0.00 1.25 46.62 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1994 0.030705 CCTCCTCCTTGGGATCCTCA 60.031 60.000 12.58 5.2 34.56 3.86 R
1968 2039 0.550914 TTTCCTCCACAACAGGCACT 59.449 50.000 0.00 0.0 43.88 4.40 R
2710 2785 1.002430 GAGGATCAACAGCCACAGACA 59.998 52.381 0.00 0.0 33.17 3.41 R
4056 4255 2.043953 GGGATTGGGGTGCAGGAC 60.044 66.667 0.00 0.0 0.00 3.85 R
4580 4804 0.172352 CCGGCAATGTAAACGGCATT 59.828 50.000 0.00 0.0 39.85 3.56 R
5076 5373 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.0 0.00 3.68 R
5782 7112 0.835543 CCATAGCCTCTCCCTCCAGG 60.836 65.000 0.00 0.0 0.00 4.45 R
6648 8258 0.686769 AGAACAGTAGGGGCGTAGGG 60.687 60.000 0.00 0.0 0.00 3.53 R
7041 8674 1.005557 GCTGATCGTCGTCAATGCTTC 60.006 52.381 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.905415 TCATCCTCAAAGGCCACATT 57.095 45.000 5.01 0.00 34.61 2.71
75 76 5.567138 CACATTATGGAACTCACTTTCCC 57.433 43.478 0.00 0.00 44.11 3.97
80 81 1.571457 TGGAACTCACTTTCCCCCAAA 59.429 47.619 0.00 0.00 44.11 3.28
155 159 2.029290 TCCACTTCTCCGCTTTGTAGAC 60.029 50.000 0.00 0.00 0.00 2.59
194 198 6.122277 TGTTGTCTTCTCACTTCTCCAAAAT 58.878 36.000 0.00 0.00 0.00 1.82
224 228 4.263435 TGAGAAAACCGTGGTTTGTACTT 58.737 39.130 17.21 1.69 46.22 2.24
303 308 2.757099 GAGCGACGGGGTTAGGGA 60.757 66.667 0.00 0.00 0.00 4.20
357 363 5.598416 TGAAATTAGATTCTGCGGAGAGA 57.402 39.130 6.76 0.00 0.00 3.10
370 376 5.886474 TCTGCGGAGAGAAGAGAAATACTAA 59.114 40.000 0.98 0.00 0.00 2.24
490 517 0.363512 CGAATCACAACAGAGCGACG 59.636 55.000 0.00 0.00 0.00 5.12
549 594 5.199982 TGGGGCTGGTCAAAATCTAATTA 57.800 39.130 0.00 0.00 0.00 1.40
613 658 0.877213 CAGATCACCATCGCATCGCA 60.877 55.000 0.00 0.00 33.75 5.10
614 659 0.034476 AGATCACCATCGCATCGCAT 59.966 50.000 0.00 0.00 33.75 4.73
615 660 0.441533 GATCACCATCGCATCGCATC 59.558 55.000 0.00 0.00 0.00 3.91
616 661 1.287041 ATCACCATCGCATCGCATCG 61.287 55.000 0.00 0.00 0.00 3.84
617 662 3.341043 ACCATCGCATCGCATCGC 61.341 61.111 0.00 0.00 0.00 4.58
618 663 3.340253 CCATCGCATCGCATCGCA 61.340 61.111 0.00 0.00 0.00 5.10
619 664 2.674084 CCATCGCATCGCATCGCAT 61.674 57.895 0.00 0.00 0.00 4.73
620 665 1.225664 CATCGCATCGCATCGCATC 60.226 57.895 0.00 0.00 0.00 3.91
621 666 2.723719 ATCGCATCGCATCGCATCG 61.724 57.895 0.00 0.00 0.00 3.84
623 668 4.004241 GCATCGCATCGCATCGCA 62.004 61.111 0.00 0.00 0.00 5.10
624 669 2.858158 CATCGCATCGCATCGCAT 59.142 55.556 0.00 0.00 0.00 4.73
625 670 1.225664 CATCGCATCGCATCGCATC 60.226 57.895 0.00 0.00 0.00 3.91
626 671 2.723719 ATCGCATCGCATCGCATCG 61.724 57.895 0.00 0.00 0.00 3.84
680 737 2.045926 GCCGGCTGGATCAGTGTT 60.046 61.111 22.15 0.00 37.49 3.32
685 742 1.740380 CGGCTGGATCAGTGTTACTGG 60.740 57.143 8.91 0.00 45.94 4.00
686 743 1.373570 GCTGGATCAGTGTTACTGGC 58.626 55.000 8.91 1.11 45.94 4.85
687 744 2.014068 GCTGGATCAGTGTTACTGGCC 61.014 57.143 8.91 0.00 45.94 5.36
688 745 0.249120 TGGATCAGTGTTACTGGCCG 59.751 55.000 8.91 0.00 45.94 6.13
689 746 0.535335 GGATCAGTGTTACTGGCCGA 59.465 55.000 8.91 0.00 45.94 5.54
690 747 1.066430 GGATCAGTGTTACTGGCCGAA 60.066 52.381 8.91 0.00 45.94 4.30
857 918 3.244112 CCACTCTCCCATTCCCGTATAAC 60.244 52.174 0.00 0.00 0.00 1.89
983 1045 4.986708 TGCCAAAACCCTCGCCCC 62.987 66.667 0.00 0.00 0.00 5.80
984 1046 4.678743 GCCAAAACCCTCGCCCCT 62.679 66.667 0.00 0.00 0.00 4.79
985 1047 2.361230 CCAAAACCCTCGCCCCTC 60.361 66.667 0.00 0.00 0.00 4.30
1345 1416 1.666872 CACTCCCCGTCCGTTGTTC 60.667 63.158 0.00 0.00 0.00 3.18
1388 1459 0.335019 GGGGGCCTTAGAATGTTGGT 59.665 55.000 0.84 0.00 0.00 3.67
1401 1472 5.241662 AGAATGTTGGTAGACTTTCTCAGC 58.758 41.667 0.00 0.00 38.77 4.26
1585 1656 1.374758 CGCGCAGTCCTTCTTCCTT 60.375 57.895 8.75 0.00 0.00 3.36
1749 1820 1.256812 GCAAATGGTACTGTTGCCCT 58.743 50.000 14.07 0.00 40.91 5.19
1968 2039 1.004320 CCCACCGAATGACGTGGAA 60.004 57.895 7.79 0.00 41.78 3.53
2070 2141 0.541863 CTCCCCCTGTACCACATGAC 59.458 60.000 0.00 0.00 0.00 3.06
2255 2327 7.594015 CAGGTTCTGCATATATTGAAATCTTGC 59.406 37.037 0.00 0.00 0.00 4.01
2276 2348 7.386573 TCTTGCGTGAAGATGTTTAATCAGTAA 59.613 33.333 0.00 0.00 35.64 2.24
2454 2529 4.093743 ACTTTTATCTTTTGCCGGGGAAT 58.906 39.130 2.18 0.00 0.00 3.01
2514 2589 5.112686 GTCTATCTAGTGCCTTTGGTTGAG 58.887 45.833 0.00 0.00 0.00 3.02
2558 2633 3.799963 TGTTGCGGATGATATGTACGTTC 59.200 43.478 0.00 0.00 0.00 3.95
2727 2802 1.446907 CCTGTCTGTGGCTGTTGATC 58.553 55.000 0.00 0.00 0.00 2.92
2884 2959 1.705337 ATGCGCTTGCGGTGTATGTC 61.705 55.000 16.79 0.00 43.34 3.06
2986 3061 2.554032 CCAAGTTAGAAGCCACAAGGTG 59.446 50.000 0.00 0.00 37.19 4.00
2988 3063 1.142870 AGTTAGAAGCCACAAGGTGCA 59.857 47.619 0.00 0.00 37.19 4.57
3020 3095 8.037382 TCTCTCAACATGATGATGAGTTTTTC 57.963 34.615 25.45 0.00 44.50 2.29
3024 3099 9.472361 CTCAACATGATGATGAGTTTTTCTTTT 57.528 29.630 20.55 0.00 40.87 2.27
3025 3100 9.820725 TCAACATGATGATGAGTTTTTCTTTTT 57.179 25.926 0.83 0.00 33.36 1.94
3161 3236 5.259832 AGCGGTAATTTCAGTCTACCTAC 57.740 43.478 0.00 0.00 34.15 3.18
3190 3265 3.005554 TCAGCTTGCTCTCTGTTATTGC 58.994 45.455 0.00 0.00 0.00 3.56
3195 3270 2.977914 TGCTCTCTGTTATTGCAGGAC 58.022 47.619 0.00 0.00 37.12 3.85
3196 3271 2.302733 TGCTCTCTGTTATTGCAGGACA 59.697 45.455 0.00 0.00 37.12 4.02
3280 3355 7.965107 GTGAGTTTGTTTTGGATGATGTAGATC 59.035 37.037 0.00 0.00 0.00 2.75
3281 3356 7.665145 TGAGTTTGTTTTGGATGATGTAGATCA 59.335 33.333 4.85 4.85 42.92 2.92
3282 3357 8.048534 AGTTTGTTTTGGATGATGTAGATCAG 57.951 34.615 8.68 0.00 42.01 2.90
3284 3359 8.946085 GTTTGTTTTGGATGATGTAGATCAGTA 58.054 33.333 8.68 0.00 42.01 2.74
3285 3360 8.722480 TTGTTTTGGATGATGTAGATCAGTAG 57.278 34.615 8.68 0.00 42.01 2.57
3286 3361 8.078060 TGTTTTGGATGATGTAGATCAGTAGA 57.922 34.615 8.68 0.00 42.01 2.59
3287 3362 8.708378 TGTTTTGGATGATGTAGATCAGTAGAT 58.292 33.333 8.68 0.00 42.01 1.98
3288 3363 8.986847 GTTTTGGATGATGTAGATCAGTAGATG 58.013 37.037 8.68 0.00 42.01 2.90
3289 3364 7.846101 TTGGATGATGTAGATCAGTAGATGT 57.154 36.000 8.68 0.00 42.01 3.06
3290 3365 7.224522 TGGATGATGTAGATCAGTAGATGTG 57.775 40.000 8.68 0.00 42.01 3.21
3299 3374 8.033038 TGTAGATCAGTAGATGTGTGTTTAACC 58.967 37.037 0.00 0.00 33.72 2.85
3320 3395 3.188667 CCATACAAGCATGAGCATAGCAG 59.811 47.826 0.00 0.00 45.49 4.24
3332 3407 6.042638 TGAGCATAGCAGTCTTTTACTTCT 57.957 37.500 0.00 0.00 35.76 2.85
3333 3408 6.102663 TGAGCATAGCAGTCTTTTACTTCTC 58.897 40.000 0.00 0.00 35.76 2.87
3334 3409 6.071108 TGAGCATAGCAGTCTTTTACTTCTCT 60.071 38.462 0.00 0.00 35.76 3.10
3439 3517 9.677567 GTTCATTGTGTTTATGTACTTGATTGT 57.322 29.630 0.00 0.00 0.00 2.71
3474 3552 4.589647 TTCTGGTCCAAATGATCATGGA 57.410 40.909 13.08 13.08 43.32 3.41
3912 4110 9.454859 CTCTTAATCCTAGATCTTGTTTGGTTT 57.545 33.333 0.00 1.16 0.00 3.27
3968 4166 3.340034 TGTTCAGTTGGGCTATAAACGG 58.660 45.455 0.00 0.00 0.00 4.44
4056 4255 1.653835 CTGCATCGCTCGTCTCTCG 60.654 63.158 0.00 0.00 41.41 4.04
4085 4284 1.227383 CAATCCCCTTTCCCCTCCG 59.773 63.158 0.00 0.00 0.00 4.63
4111 4310 3.402681 CCCACTCACCGCATCCCT 61.403 66.667 0.00 0.00 0.00 4.20
4185 4384 2.034878 TCGCTCCATATGAGAAGCACT 58.965 47.619 18.58 0.00 44.42 4.40
4187 4386 3.636764 TCGCTCCATATGAGAAGCACTAA 59.363 43.478 18.58 4.77 44.42 2.24
4227 4438 3.703420 GACCGCTGATATTCGTTACTGT 58.297 45.455 0.00 0.00 0.00 3.55
4228 4439 3.444916 ACCGCTGATATTCGTTACTGTG 58.555 45.455 0.00 0.00 0.00 3.66
4229 4440 3.129813 ACCGCTGATATTCGTTACTGTGA 59.870 43.478 0.00 0.00 0.00 3.58
4230 4441 3.731216 CCGCTGATATTCGTTACTGTGAG 59.269 47.826 0.00 0.00 0.00 3.51
4231 4442 3.731216 CGCTGATATTCGTTACTGTGAGG 59.269 47.826 0.00 0.00 0.00 3.86
4232 4443 4.497507 CGCTGATATTCGTTACTGTGAGGA 60.498 45.833 0.00 0.00 0.00 3.71
4233 4444 4.740695 GCTGATATTCGTTACTGTGAGGAC 59.259 45.833 0.00 0.00 0.00 3.85
4234 4445 4.916870 TGATATTCGTTACTGTGAGGACG 58.083 43.478 0.00 0.00 36.89 4.79
4235 4446 1.992170 ATTCGTTACTGTGAGGACGC 58.008 50.000 0.00 0.00 35.63 5.19
4236 4447 0.038892 TTCGTTACTGTGAGGACGCC 60.039 55.000 0.00 0.00 35.63 5.68
4237 4448 0.892358 TCGTTACTGTGAGGACGCCT 60.892 55.000 0.00 0.00 36.03 5.52
4238 4449 0.732880 CGTTACTGTGAGGACGCCTG 60.733 60.000 2.98 0.00 31.76 4.85
4257 4468 3.635373 CCTGCATGAACTTGAATGGCTAT 59.365 43.478 0.00 0.00 0.00 2.97
4268 4479 3.270027 TGAATGGCTATGAACGAACTGG 58.730 45.455 0.00 0.00 0.00 4.00
4277 4488 1.077357 AACGAACTGGGTTGTGCCA 60.077 52.632 0.00 0.00 39.65 4.92
4345 4556 4.335647 CAGCCGAGGGTGCAGGTT 62.336 66.667 8.48 0.00 36.81 3.50
4348 4559 2.200337 GCCGAGGGTGCAGGTTTTT 61.200 57.895 0.00 0.00 0.00 1.94
4393 4605 0.319405 GCTGCTGGCTTGGTCATTTT 59.681 50.000 0.00 0.00 38.06 1.82
4429 4641 2.245159 TGATGCTGGATCAATCGGAC 57.755 50.000 9.55 0.00 38.19 4.79
4473 4685 8.537728 TGGTTAAATCAATGCCAGATCTATTT 57.462 30.769 0.00 0.00 0.00 1.40
4474 4686 8.980596 TGGTTAAATCAATGCCAGATCTATTTT 58.019 29.630 0.00 0.00 0.00 1.82
4475 4687 9.468532 GGTTAAATCAATGCCAGATCTATTTTC 57.531 33.333 0.00 0.00 0.00 2.29
4479 4691 8.763984 AATCAATGCCAGATCTATTTTCTTCT 57.236 30.769 0.00 0.00 0.00 2.85
4480 4692 8.763984 ATCAATGCCAGATCTATTTTCTTCTT 57.236 30.769 0.00 0.00 0.00 2.52
4481 4693 8.218338 TCAATGCCAGATCTATTTTCTTCTTC 57.782 34.615 0.00 0.00 0.00 2.87
4580 4804 6.325286 AGCCAAACAAGTTTCCTATTTTGGTA 59.675 34.615 11.46 0.00 41.05 3.25
4667 4891 5.241506 ACACATGTTCCTGGATTGTTAGTTG 59.758 40.000 0.00 0.00 0.00 3.16
4680 4904 6.803807 GGATTGTTAGTTGTGCTTCTGATTTC 59.196 38.462 0.00 0.00 0.00 2.17
4747 4971 6.830324 TCAATTTCATAAGCTCCATACTTGCT 59.170 34.615 0.00 0.00 38.87 3.91
4868 5092 5.587043 ACGTGGTATGTTTCTGAAAGTTCAA 59.413 36.000 2.48 0.00 36.64 2.69
4910 5143 7.039313 AGAATGTACAAGGTTTTGGTCTTTC 57.961 36.000 0.00 0.00 38.66 2.62
4966 5263 7.522901 TTGAAGTTTCAATGTTTGACATGTG 57.477 32.000 1.15 0.00 41.88 3.21
4994 5291 5.799978 ATATATCTACTCCCTCCGTTCCT 57.200 43.478 0.00 0.00 0.00 3.36
4995 5292 6.905067 ATATATCTACTCCCTCCGTTCCTA 57.095 41.667 0.00 0.00 0.00 2.94
4996 5293 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
4997 5294 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4998 5295 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4999 5296 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
5000 5297 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
5001 5298 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
5002 5299 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
5003 5300 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5004 5301 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5005 5302 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5006 5303 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5007 5304 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5008 5305 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5009 5306 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5010 5307 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5026 5323 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
5027 5324 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
5028 5325 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
5029 5326 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
5030 5327 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
5031 5328 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
5032 5329 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
5033 5330 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
5034 5331 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
5035 5332 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
5036 5333 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
5037 5334 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
5038 5335 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
5039 5336 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
5040 5337 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
5042 5339 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
5043 5340 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
5044 5341 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
5045 5342 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
5046 5343 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
5047 5344 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
5048 5345 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
5049 5346 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
5050 5347 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
5051 5348 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
5052 5349 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
5053 5350 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
5054 5351 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
5055 5352 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
5056 5353 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
5060 5357 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
5061 5358 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
5071 5368 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
5082 5379 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5083 5380 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5084 5381 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5085 5382 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5086 5383 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5087 5384 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5088 5385 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5089 5386 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5090 5387 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
5091 5388 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
5092 5389 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
5093 5390 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
5094 5391 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
5095 5392 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
5096 5393 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
5097 5394 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
5098 5395 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
5099 5396 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
5100 5397 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
5101 5398 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
5102 5399 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
5132 5429 8.726870 TTCCAAAGACTTATATTTAGGAACGG 57.273 34.615 0.00 0.00 29.25 4.44
5133 5430 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
5134 5431 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
5135 5432 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
5136 5433 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5137 5434 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5138 5435 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5190 5488 2.545106 GCACTTCCATTTTGCCAGTTTG 59.455 45.455 0.00 0.00 0.00 2.93
5192 5490 4.440880 CACTTCCATTTTGCCAGTTTGAA 58.559 39.130 0.00 0.00 0.00 2.69
5214 5512 9.432982 TTGAATTAAATATTATTCCAGCCCACT 57.567 29.630 8.00 0.00 31.29 4.00
5215 5513 8.859090 TGAATTAAATATTATTCCAGCCCACTG 58.141 33.333 8.00 0.00 44.05 3.66
5216 5514 6.648879 TTAAATATTATTCCAGCCCACTGC 57.351 37.500 0.00 0.00 43.02 4.40
5226 5524 2.501602 GCCCACTGCTTGCCACTTT 61.502 57.895 0.00 0.00 36.87 2.66
5227 5525 1.364901 CCCACTGCTTGCCACTTTG 59.635 57.895 0.00 0.00 0.00 2.77
5228 5526 1.300388 CCACTGCTTGCCACTTTGC 60.300 57.895 0.00 0.00 0.00 3.68
5229 5527 1.438399 CACTGCTTGCCACTTTGCA 59.562 52.632 0.00 0.00 40.07 4.08
5230 5528 0.032952 CACTGCTTGCCACTTTGCAT 59.967 50.000 0.00 0.00 41.70 3.96
5232 5530 1.139455 ACTGCTTGCCACTTTGCATTT 59.861 42.857 0.00 0.00 41.70 2.32
5234 5532 1.941294 TGCTTGCCACTTTGCATTTTG 59.059 42.857 0.00 0.00 41.70 2.44
5235 5533 1.264826 GCTTGCCACTTTGCATTTTGG 59.735 47.619 4.05 4.05 41.70 3.28
5236 5534 2.563702 CTTGCCACTTTGCATTTTGGT 58.436 42.857 9.14 0.00 41.70 3.67
5237 5535 3.726607 CTTGCCACTTTGCATTTTGGTA 58.273 40.909 9.14 2.98 41.70 3.25
5238 5536 4.317488 CTTGCCACTTTGCATTTTGGTAT 58.683 39.130 9.14 0.00 41.70 2.73
5240 5538 4.314121 TGCCACTTTGCATTTTGGTATTC 58.686 39.130 9.14 0.00 36.04 1.75
5241 5539 4.040217 TGCCACTTTGCATTTTGGTATTCT 59.960 37.500 9.14 0.00 36.04 2.40
5242 5540 4.389687 GCCACTTTGCATTTTGGTATTCTG 59.610 41.667 9.14 0.00 0.00 3.02
5243 5541 4.389687 CCACTTTGCATTTTGGTATTCTGC 59.610 41.667 0.00 0.00 0.00 4.26
5244 5542 4.989797 CACTTTGCATTTTGGTATTCTGCA 59.010 37.500 0.00 0.00 40.79 4.41
5245 5543 5.640357 CACTTTGCATTTTGGTATTCTGCAT 59.360 36.000 0.00 0.00 41.95 3.96
5246 5544 6.812656 CACTTTGCATTTTGGTATTCTGCATA 59.187 34.615 0.00 0.00 41.95 3.14
5247 5545 7.493320 CACTTTGCATTTTGGTATTCTGCATAT 59.507 33.333 0.00 0.00 41.95 1.78
5249 5547 8.789825 TTTGCATTTTGGTATTCTGCATATTT 57.210 26.923 0.00 0.00 41.95 1.40
5252 5550 8.666573 TGCATTTTGGTATTCTGCATATTTTTG 58.333 29.630 0.00 0.00 37.88 2.44
5253 5551 8.667463 GCATTTTGGTATTCTGCATATTTTTGT 58.333 29.630 0.00 0.00 33.13 2.83
5254 5552 9.976255 CATTTTGGTATTCTGCATATTTTTGTG 57.024 29.630 0.00 0.00 0.00 3.33
5256 5554 8.531622 TTTGGTATTCTGCATATTTTTGTGTG 57.468 30.769 0.00 0.00 0.00 3.82
5257 5555 6.098679 TGGTATTCTGCATATTTTTGTGTGC 58.901 36.000 0.00 0.00 36.83 4.57
5258 5556 6.098679 GGTATTCTGCATATTTTTGTGTGCA 58.901 36.000 0.00 0.00 42.74 4.57
5259 5557 6.757947 GGTATTCTGCATATTTTTGTGTGCAT 59.242 34.615 0.00 0.00 43.69 3.96
5261 5559 6.469139 TTCTGCATATTTTTGTGTGCATTG 57.531 33.333 0.00 0.00 43.69 2.82
5262 5560 5.539979 TCTGCATATTTTTGTGTGCATTGT 58.460 33.333 0.00 0.00 43.69 2.71
5264 5562 5.295152 TGCATATTTTTGTGTGCATTGTGA 58.705 33.333 0.00 0.00 40.59 3.58
5265 5563 5.756833 TGCATATTTTTGTGTGCATTGTGAA 59.243 32.000 0.00 0.00 40.59 3.18
5268 5566 7.628235 CATATTTTTGTGTGCATTGTGAACAA 58.372 30.769 0.00 0.00 37.73 2.83
5269 5567 5.929697 TTTTTGTGTGCATTGTGAACAAA 57.070 30.435 0.00 0.00 37.73 2.83
5270 5568 6.492007 TTTTTGTGTGCATTGTGAACAAAT 57.508 29.167 0.00 0.00 37.73 2.32
5273 5571 6.580963 TTGTGTGCATTGTGAACAAATTAC 57.419 33.333 0.00 0.99 37.73 1.89
5275 5573 6.101997 TGTGTGCATTGTGAACAAATTACAA 58.898 32.000 0.00 0.00 37.73 2.41
5277 5575 7.279536 TGTGTGCATTGTGAACAAATTACAATT 59.720 29.630 0.00 0.00 37.73 2.32
5278 5576 8.121708 GTGTGCATTGTGAACAAATTACAATTT 58.878 29.630 0.00 0.00 37.73 1.82
5279 5577 8.333908 TGTGCATTGTGAACAAATTACAATTTC 58.666 29.630 0.00 0.00 41.60 2.17
5280 5578 8.550376 GTGCATTGTGAACAAATTACAATTTCT 58.450 29.630 0.00 0.00 41.60 2.52
5286 5584 9.681692 TGTGAACAAATTACAATTTCTGAGATG 57.318 29.630 0.00 0.00 36.52 2.90
5287 5585 9.897744 GTGAACAAATTACAATTTCTGAGATGA 57.102 29.630 0.00 0.00 36.52 2.92
5297 5595 6.208007 ACAATTTCTGAGATGAACATGAAGCA 59.792 34.615 0.00 0.00 0.00 3.91
5298 5596 5.618056 TTTCTGAGATGAACATGAAGCAC 57.382 39.130 0.00 0.00 0.00 4.40
5301 5599 5.981174 TCTGAGATGAACATGAAGCACATA 58.019 37.500 0.00 0.00 37.46 2.29
5303 5601 7.729116 TCTGAGATGAACATGAAGCACATATA 58.271 34.615 0.00 0.00 37.46 0.86
5306 5604 8.373220 TGAGATGAACATGAAGCACATATATCT 58.627 33.333 0.00 0.00 37.46 1.98
5307 5605 9.866798 GAGATGAACATGAAGCACATATATCTA 57.133 33.333 0.00 0.00 37.46 1.98
5313 5611 8.859236 ACATGAAGCACATATATCTAATTGCT 57.141 30.769 0.00 0.00 42.03 3.91
5315 5613 8.943002 CATGAAGCACATATATCTAATTGCTGA 58.057 33.333 0.00 0.00 40.15 4.26
5316 5614 8.907222 TGAAGCACATATATCTAATTGCTGAA 57.093 30.769 0.00 0.00 40.15 3.02
5350 5648 8.697846 AGATGAACATGAAGCACATATTTTTG 57.302 30.769 0.00 0.00 37.46 2.44
5351 5649 8.308931 AGATGAACATGAAGCACATATTTTTGT 58.691 29.630 0.00 0.00 37.46 2.83
5354 5652 7.710044 TGAACATGAAGCACATATTTTTGTGTT 59.290 29.630 0.00 0.00 46.93 3.32
5357 5655 7.874016 ACATGAAGCACATATTTTTGTGTTCAT 59.126 29.630 18.64 18.64 45.77 2.57
5398 6727 4.696455 AGCACTTCCATTTTTCCAGTTTG 58.304 39.130 0.00 0.00 0.00 2.93
5451 6780 4.389687 CCACTTTGCATTTTGGTATTCTGC 59.610 41.667 0.00 0.00 0.00 4.26
5452 6781 4.989797 CACTTTGCATTTTGGTATTCTGCA 59.010 37.500 0.00 0.00 40.79 4.41
5465 6795 6.098679 TGGTATTCTGCATATTTTTGTGTGC 58.901 36.000 0.00 0.00 36.83 4.57
5782 7112 0.459078 GAGAGGCCGTGGTAGTTACC 59.541 60.000 0.00 1.25 46.62 2.85
6305 7656 2.063156 TTTAAAGCAAGCATGGCACG 57.937 45.000 0.00 0.00 37.68 5.34
6308 7672 2.366480 AAAGCAAGCATGGCACGCAA 62.366 50.000 8.75 0.00 37.68 4.85
6468 7839 6.934048 AGTACAGTAGTTTACTCCGTATCC 57.066 41.667 0.00 0.00 36.76 2.59
6541 7913 6.379386 GTTGGGTAATTGTTTAGAGTTGCTC 58.621 40.000 0.00 0.00 0.00 4.26
6561 8171 5.830991 TGCTCAAAATTAGTACACCAAACCT 59.169 36.000 0.00 0.00 0.00 3.50
6575 8185 5.843969 ACACCAAACCTCTTTTTATGGGAAT 59.156 36.000 0.00 0.00 32.21 3.01
6583 8193 8.950007 ACCTCTTTTTATGGGAATGACTAAAA 57.050 30.769 0.00 0.00 0.00 1.52
6648 8258 3.984633 GGTCTGCTATATTCAAGAGACGC 59.015 47.826 0.00 0.00 32.32 5.19
6686 8296 2.093288 TCTGCTTTGGGCTCTCAGTATG 60.093 50.000 0.00 0.00 42.39 2.39
6687 8297 1.630369 TGCTTTGGGCTCTCAGTATGT 59.370 47.619 0.00 0.00 42.39 2.29
7014 8643 5.007385 ACATCTAAGTATTCACGTCCACC 57.993 43.478 0.00 0.00 0.00 4.61
7041 8674 7.868415 GTCTGTATGCAAGTCCTTAATACTAGG 59.132 40.741 0.00 0.00 0.00 3.02
7124 8767 4.254709 TGCTCTGCCACGCCTTGT 62.255 61.111 0.00 0.00 0.00 3.16
7155 8798 0.039708 AACGGGAACTTCGAGTCGAC 60.040 55.000 16.28 7.70 34.89 4.20
7195 8838 1.133199 TCCTTGAGCAACCCAACCAAT 60.133 47.619 0.00 0.00 0.00 3.16
7260 8906 2.094545 GGCGCTTCTTGGAAAATGTCAT 60.095 45.455 7.64 0.00 0.00 3.06
7624 12240 0.188342 ACTTGGCACCAATGGACCTT 59.812 50.000 6.16 0.00 35.20 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.482593 GGAGATGAAGTGGATGACGGT 59.517 52.381 0.00 0.00 0.00 4.83
1 2 1.759445 AGGAGATGAAGTGGATGACGG 59.241 52.381 0.00 0.00 0.00 4.79
2 3 2.692557 AGAGGAGATGAAGTGGATGACG 59.307 50.000 0.00 0.00 0.00 4.35
75 76 2.508526 GCTAGAGCATATGGGTTTGGG 58.491 52.381 4.56 0.00 41.59 4.12
104 105 0.188587 AGGGCGAGGAGGATGTGATA 59.811 55.000 0.00 0.00 0.00 2.15
155 159 4.768659 GACAACATCAATGTCTAGCTCG 57.231 45.455 0.00 0.00 43.03 5.03
184 188 6.891306 TTCTCATCTAGGGATTTTGGAGAA 57.109 37.500 0.00 0.00 36.15 2.87
194 198 2.500098 CCACGGTTTTCTCATCTAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
224 228 2.186602 TTGGCGACGGATTAGGGCAA 62.187 55.000 0.00 0.00 41.77 4.52
303 308 5.441500 TCACCGTCATCTAGATCTCTTCTT 58.558 41.667 1.03 0.00 35.79 2.52
333 339 6.586344 TCTCTCCGCAGAATCTAATTTCATT 58.414 36.000 0.00 0.00 0.00 2.57
337 343 6.097554 TCTCTTCTCTCCGCAGAATCTAATTT 59.902 38.462 0.00 0.00 31.84 1.82
348 354 6.525578 TTTAGTATTTCTCTTCTCTCCGCA 57.474 37.500 0.00 0.00 0.00 5.69
468 495 2.058798 TCGCTCTGTTGTGATTCGTTC 58.941 47.619 0.00 0.00 0.00 3.95
490 517 2.678336 GGAGCCTACATTGTGTACTTGC 59.322 50.000 0.00 0.00 0.00 4.01
519 564 2.776526 ACCAGCCCCAACTCCACA 60.777 61.111 0.00 0.00 0.00 4.17
549 594 6.879458 GGTGTAATGTGTCAGACTAGGATTTT 59.121 38.462 1.31 0.00 0.00 1.82
589 634 2.808523 TGCGATGGTGATCTGATCTC 57.191 50.000 17.82 14.05 0.00 2.75
643 688 4.849329 CTACGGCTGGACGCGGAC 62.849 72.222 12.47 2.59 41.07 4.79
686 743 1.248101 ATTTGGGGTTTCGGCTTCGG 61.248 55.000 0.00 0.00 34.13 4.30
687 744 0.109319 CATTTGGGGTTTCGGCTTCG 60.109 55.000 0.00 0.00 0.00 3.79
688 745 0.246360 CCATTTGGGGTTTCGGCTTC 59.754 55.000 0.00 0.00 0.00 3.86
689 746 2.361189 CCATTTGGGGTTTCGGCTT 58.639 52.632 0.00 0.00 0.00 4.35
690 747 4.111967 CCATTTGGGGTTTCGGCT 57.888 55.556 0.00 0.00 0.00 5.52
718 775 2.110213 TGCGTGTGTTCTCCCCAC 59.890 61.111 0.00 0.00 0.00 4.61
983 1045 1.546773 CCATCGTAGGAGGAGGAGGAG 60.547 61.905 0.00 0.00 0.00 3.69
984 1046 0.478942 CCATCGTAGGAGGAGGAGGA 59.521 60.000 0.00 0.00 0.00 3.71
985 1047 1.182385 GCCATCGTAGGAGGAGGAGG 61.182 65.000 0.00 0.00 0.00 4.30
1140 1211 3.000819 ACGAATCGGGTCAGGGCA 61.001 61.111 7.80 0.00 0.00 5.36
1345 1416 1.826024 CCCAGATCTGAACCGAGGG 59.174 63.158 24.62 10.92 0.00 4.30
1401 1472 4.787598 CAAGAAGAAACCATTCAGAACCG 58.212 43.478 0.00 0.00 38.06 4.44
1656 1727 2.045926 GAGGTGGCGGCAATGACT 60.046 61.111 15.50 9.97 0.00 3.41
1749 1820 1.367471 CGAGGCACACTCTCCACAA 59.633 57.895 0.00 0.00 44.33 3.33
1923 1994 0.030705 CCTCCTCCTTGGGATCCTCA 60.031 60.000 12.58 5.20 34.56 3.86
1968 2039 0.550914 TTTCCTCCACAACAGGCACT 59.449 50.000 0.00 0.00 43.88 4.40
2070 2141 1.321074 ACGACTTCTTAGGGGCCTCG 61.321 60.000 0.84 4.57 0.00 4.63
2223 2295 8.450578 TTCAATATATGCAGAACCTGTAAAGG 57.549 34.615 0.00 0.00 33.43 3.11
2314 2386 6.313905 AGCTTCATGTAAACATTTACTCTCCG 59.686 38.462 14.03 3.81 42.61 4.63
2476 2551 8.409371 CACTAGATAGACAACAGTGATGTACAT 58.591 37.037 8.43 8.43 39.13 2.29
2477 2552 7.628580 GCACTAGATAGACAACAGTGATGTACA 60.629 40.741 5.96 0.00 39.13 2.90
2514 2589 5.754890 ACATCAACAAGCTTCAAACAATTCC 59.245 36.000 0.00 0.00 0.00 3.01
2558 2633 6.182039 TCTCAAAAGGTGAATTCATAAGCG 57.818 37.500 12.12 0.00 35.22 4.68
2710 2785 1.002430 GAGGATCAACAGCCACAGACA 59.998 52.381 0.00 0.00 33.17 3.41
2884 2959 3.524541 GGCATGTAAGGGCAGATTTTTG 58.475 45.455 0.00 0.00 45.28 2.44
2986 3061 6.849502 TCATCATGTTGAGAGAAGAAAATGC 58.150 36.000 2.22 0.00 0.00 3.56
2988 3063 8.803397 TCATCATCATGTTGAGAGAAGAAAAT 57.197 30.769 11.87 0.00 0.00 1.82
3161 3236 5.117584 ACAGAGAGCAAGCTGATGATTTAG 58.882 41.667 0.00 0.00 36.07 1.85
3280 3355 7.899178 TGTATGGTTAAACACACATCTACTG 57.101 36.000 0.00 0.00 0.00 2.74
3281 3356 7.119262 GCTTGTATGGTTAAACACACATCTACT 59.881 37.037 5.26 0.00 0.00 2.57
3282 3357 7.094975 TGCTTGTATGGTTAAACACACATCTAC 60.095 37.037 5.26 0.00 0.00 2.59
3284 3359 5.767665 TGCTTGTATGGTTAAACACACATCT 59.232 36.000 5.26 0.00 0.00 2.90
3285 3360 6.007936 TGCTTGTATGGTTAAACACACATC 57.992 37.500 5.26 1.88 0.00 3.06
3286 3361 6.208402 TCATGCTTGTATGGTTAAACACACAT 59.792 34.615 5.26 0.00 0.00 3.21
3287 3362 5.532779 TCATGCTTGTATGGTTAAACACACA 59.467 36.000 0.00 0.00 0.00 3.72
3288 3363 6.007936 TCATGCTTGTATGGTTAAACACAC 57.992 37.500 0.00 0.00 0.00 3.82
3289 3364 5.335583 GCTCATGCTTGTATGGTTAAACACA 60.336 40.000 0.00 0.00 36.03 3.72
3290 3365 5.095490 GCTCATGCTTGTATGGTTAAACAC 58.905 41.667 0.00 0.00 36.03 3.32
3299 3374 3.813724 ACTGCTATGCTCATGCTTGTATG 59.186 43.478 0.00 0.00 40.48 2.39
3439 3517 2.297033 GACCAGAAATCAAAGGCAGCAA 59.703 45.455 0.00 0.00 0.00 3.91
3474 3552 2.224967 ACTTCCTGCTGCTCTCCATTTT 60.225 45.455 0.00 0.00 0.00 1.82
3640 3721 7.041780 ACACATTCTCAAACTAAGTTGTAGCAG 60.042 37.037 0.00 0.00 0.00 4.24
3656 3737 4.897509 ATCTCCAACTCACACATTCTCA 57.102 40.909 0.00 0.00 0.00 3.27
3849 4047 6.815089 AGTGGAAGCAACAATTAAATGTCAA 58.185 32.000 0.00 0.00 31.81 3.18
3968 4166 8.157476 AGAGGTGTTATCCAATTACATGGTATC 58.843 37.037 0.00 0.00 41.46 2.24
4056 4255 2.043953 GGGATTGGGGTGCAGGAC 60.044 66.667 0.00 0.00 0.00 3.85
4085 4284 1.806623 GCGGTGAGTGGGATATGTGAC 60.807 57.143 0.00 0.00 0.00 3.67
4185 4384 3.006430 TCGACACTGCTCTTTCCATGTTA 59.994 43.478 0.00 0.00 0.00 2.41
4187 4386 1.344438 TCGACACTGCTCTTTCCATGT 59.656 47.619 0.00 0.00 0.00 3.21
4227 4438 1.375908 GTTCATGCAGGCGTCCTCA 60.376 57.895 0.00 0.00 0.00 3.86
4228 4439 0.674895 AAGTTCATGCAGGCGTCCTC 60.675 55.000 0.00 0.00 0.00 3.71
4229 4440 0.957395 CAAGTTCATGCAGGCGTCCT 60.957 55.000 0.00 0.00 0.00 3.85
4230 4441 0.955428 TCAAGTTCATGCAGGCGTCC 60.955 55.000 0.00 0.00 0.00 4.79
4231 4442 0.874390 TTCAAGTTCATGCAGGCGTC 59.126 50.000 0.00 0.00 0.00 5.19
4232 4443 1.200716 CATTCAAGTTCATGCAGGCGT 59.799 47.619 0.00 0.00 0.00 5.68
4233 4444 1.468565 CCATTCAAGTTCATGCAGGCG 60.469 52.381 0.00 0.00 0.00 5.52
4234 4445 1.738030 GCCATTCAAGTTCATGCAGGC 60.738 52.381 0.00 0.00 0.00 4.85
4235 4446 1.822990 AGCCATTCAAGTTCATGCAGG 59.177 47.619 0.00 0.00 0.00 4.85
4236 4447 4.337274 TCATAGCCATTCAAGTTCATGCAG 59.663 41.667 0.00 0.00 0.00 4.41
4237 4448 4.271661 TCATAGCCATTCAAGTTCATGCA 58.728 39.130 0.00 0.00 0.00 3.96
4238 4449 4.906065 TCATAGCCATTCAAGTTCATGC 57.094 40.909 0.00 0.00 0.00 4.06
4257 4468 1.098712 GGCACAACCCAGTTCGTTCA 61.099 55.000 0.00 0.00 0.00 3.18
4277 4488 3.017581 GCCTCCTCCCACCACCAT 61.018 66.667 0.00 0.00 0.00 3.55
4345 4556 1.950909 ACGGAATCGAAGCAACCAAAA 59.049 42.857 0.00 0.00 40.11 2.44
4348 4559 1.153353 GAACGGAATCGAAGCAACCA 58.847 50.000 0.00 0.00 40.11 3.67
4393 4605 7.039853 TCCAGCATCAATCTCACAAATAACAAA 60.040 33.333 0.00 0.00 0.00 2.83
4429 4641 9.771534 TTTAACCAACCCAATCAATAAAAGAAG 57.228 29.630 0.00 0.00 0.00 2.85
4473 4685 7.425606 GGTAAGATGCAACAAAAGAAGAAGAA 58.574 34.615 0.00 0.00 0.00 2.52
4474 4686 6.016276 GGGTAAGATGCAACAAAAGAAGAAGA 60.016 38.462 0.00 0.00 0.00 2.87
4475 4687 6.152379 GGGTAAGATGCAACAAAAGAAGAAG 58.848 40.000 0.00 0.00 0.00 2.85
4476 4688 5.596361 TGGGTAAGATGCAACAAAAGAAGAA 59.404 36.000 0.00 0.00 0.00 2.52
4477 4689 5.136828 TGGGTAAGATGCAACAAAAGAAGA 58.863 37.500 0.00 0.00 0.00 2.87
4478 4690 5.452078 TGGGTAAGATGCAACAAAAGAAG 57.548 39.130 0.00 0.00 0.00 2.85
4479 4691 5.127845 TGTTGGGTAAGATGCAACAAAAGAA 59.872 36.000 0.00 0.00 33.53 2.52
4480 4692 4.646945 TGTTGGGTAAGATGCAACAAAAGA 59.353 37.500 0.00 0.00 33.53 2.52
4481 4693 4.942852 TGTTGGGTAAGATGCAACAAAAG 58.057 39.130 0.00 0.00 33.53 2.27
4580 4804 0.172352 CCGGCAATGTAAACGGCATT 59.828 50.000 0.00 0.00 39.85 3.56
4667 4891 7.592051 AGAGAAGAAAATGAAATCAGAAGCAC 58.408 34.615 0.00 0.00 0.00 4.40
4696 4920 3.350833 GGCAGTCATGGAAGTTGATTCT 58.649 45.455 0.00 0.00 38.07 2.40
4868 5092 5.163195 ACATTCTTACAGTCAGGGTTGAGTT 60.163 40.000 0.00 0.00 34.74 3.01
4978 5275 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
4980 5277 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4981 5278 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4982 5279 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4983 5280 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4984 5281 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4985 5282 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5000 5297 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
5001 5298 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
5002 5299 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
5003 5300 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
5004 5301 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
5005 5302 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
5006 5303 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
5007 5304 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
5008 5305 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
5009 5306 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
5010 5307 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
5011 5308 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
5012 5309 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
5013 5310 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
5014 5311 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
5015 5312 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
5016 5313 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
5017 5314 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
5018 5315 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
5019 5316 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
5020 5317 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
5021 5318 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
5022 5319 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
5023 5320 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
5024 5321 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
5025 5322 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
5026 5323 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
5027 5324 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
5028 5325 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
5029 5326 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
5034 5331 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
5035 5332 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
5045 5342 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
5046 5343 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
5047 5344 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
5060 5357 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5061 5358 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5062 5359 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5063 5360 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5064 5361 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5065 5362 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5066 5363 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5067 5364 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
5068 5365 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
5069 5366 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
5070 5367 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
5071 5368 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
5072 5369 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
5073 5370 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
5074 5371 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
5075 5372 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
5076 5373 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
5077 5374 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
5078 5375 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
5079 5376 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
5080 5377 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
5081 5378 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
5082 5379 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
5106 5403 9.169592 CCGTTCCTAAATATAAGTCTTTGGAAA 57.830 33.333 0.00 0.00 33.62 3.13
5107 5404 8.542080 TCCGTTCCTAAATATAAGTCTTTGGAA 58.458 33.333 0.00 0.00 0.00 3.53
5108 5405 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
5109 5406 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
5110 5407 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5111 5408 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5112 5409 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5113 5410 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5114 5411 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5115 5412 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5116 5413 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5121 5418 8.912614 AATATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
5122 5419 8.591072 CAAATATATACTCCCTCCGTTCCTAAA 58.409 37.037 0.00 0.00 0.00 1.85
5123 5420 7.179694 CCAAATATATACTCCCTCCGTTCCTAA 59.820 40.741 0.00 0.00 0.00 2.69
5124 5421 6.666546 CCAAATATATACTCCCTCCGTTCCTA 59.333 42.308 0.00 0.00 0.00 2.94
5125 5422 5.484290 CCAAATATATACTCCCTCCGTTCCT 59.516 44.000 0.00 0.00 0.00 3.36
5126 5423 5.731591 CCAAATATATACTCCCTCCGTTCC 58.268 45.833 0.00 0.00 0.00 3.62
5127 5424 5.046520 AGCCAAATATATACTCCCTCCGTTC 60.047 44.000 0.00 0.00 0.00 3.95
5128 5425 4.844655 AGCCAAATATATACTCCCTCCGTT 59.155 41.667 0.00 0.00 0.00 4.44
5129 5426 4.426704 AGCCAAATATATACTCCCTCCGT 58.573 43.478 0.00 0.00 0.00 4.69
5130 5427 4.466370 TGAGCCAAATATATACTCCCTCCG 59.534 45.833 0.00 0.00 0.00 4.63
5131 5428 5.248477 TGTGAGCCAAATATATACTCCCTCC 59.752 44.000 0.00 0.00 0.00 4.30
5132 5429 6.360370 TGTGAGCCAAATATATACTCCCTC 57.640 41.667 0.00 0.00 0.00 4.30
5133 5430 6.273260 ACATGTGAGCCAAATATATACTCCCT 59.727 38.462 0.00 0.00 0.00 4.20
5134 5431 6.476378 ACATGTGAGCCAAATATATACTCCC 58.524 40.000 0.00 0.00 0.00 4.30
5135 5432 9.672673 AATACATGTGAGCCAAATATATACTCC 57.327 33.333 9.11 0.00 0.00 3.85
5162 5459 6.155049 ACTGGCAAAATGGAAGTGCTAATAAT 59.845 34.615 0.00 0.00 38.36 1.28
5165 5462 3.834231 ACTGGCAAAATGGAAGTGCTAAT 59.166 39.130 0.00 0.00 38.36 1.73
5168 5465 1.708341 ACTGGCAAAATGGAAGTGCT 58.292 45.000 0.00 0.00 38.36 4.40
5190 5488 7.814587 GCAGTGGGCTGGAATAATATTTAATTC 59.185 37.037 0.00 0.00 42.78 2.17
5192 5490 7.232118 GCAGTGGGCTGGAATAATATTTAAT 57.768 36.000 0.00 0.00 42.78 1.40
5211 5509 1.438399 TGCAAAGTGGCAAGCAGTG 59.562 52.632 0.00 0.00 41.65 3.66
5219 5517 4.389687 CAGAATACCAAAATGCAAAGTGGC 59.610 41.667 11.66 0.00 34.27 5.01
5220 5518 4.389687 GCAGAATACCAAAATGCAAAGTGG 59.610 41.667 10.48 10.48 36.88 4.00
5221 5519 4.989797 TGCAGAATACCAAAATGCAAAGTG 59.010 37.500 0.00 0.00 43.41 3.16
5227 5525 8.667463 ACAAAAATATGCAGAATACCAAAATGC 58.333 29.630 0.00 0.00 37.40 3.56
5228 5526 9.976255 CACAAAAATATGCAGAATACCAAAATG 57.024 29.630 0.00 0.00 0.00 2.32
5229 5527 9.723601 ACACAAAAATATGCAGAATACCAAAAT 57.276 25.926 0.00 0.00 0.00 1.82
5230 5528 8.986847 CACACAAAAATATGCAGAATACCAAAA 58.013 29.630 0.00 0.00 0.00 2.44
5232 5530 6.589523 GCACACAAAAATATGCAGAATACCAA 59.410 34.615 0.00 0.00 38.00 3.67
5234 5532 6.098679 TGCACACAAAAATATGCAGAATACC 58.901 36.000 0.00 0.00 42.92 2.73
5242 5540 5.842619 TCACAATGCACACAAAAATATGC 57.157 34.783 0.00 0.00 38.59 3.14
5243 5541 7.175073 TGTTCACAATGCACACAAAAATATG 57.825 32.000 0.00 0.00 0.00 1.78
5244 5542 7.783090 TTGTTCACAATGCACACAAAAATAT 57.217 28.000 0.00 0.00 0.00 1.28
5245 5543 7.601073 TTTGTTCACAATGCACACAAAAATA 57.399 28.000 0.00 0.00 35.06 1.40
5246 5544 6.492007 TTTGTTCACAATGCACACAAAAAT 57.508 29.167 0.00 0.00 35.06 1.82
5247 5545 5.929697 TTTGTTCACAATGCACACAAAAA 57.070 30.435 0.00 0.00 35.06 1.94
5249 5547 6.591448 TGTAATTTGTTCACAATGCACACAAA 59.409 30.769 6.83 6.83 40.60 2.83
5252 5550 6.580963 TTGTAATTTGTTCACAATGCACAC 57.419 33.333 0.00 0.00 35.55 3.82
5253 5551 7.783090 AATTGTAATTTGTTCACAATGCACA 57.217 28.000 4.67 0.00 40.94 4.57
5254 5552 8.550376 AGAAATTGTAATTTGTTCACAATGCAC 58.450 29.630 7.27 1.46 40.94 4.57
5256 5554 8.763356 TCAGAAATTGTAATTTGTTCACAATGC 58.237 29.630 7.27 1.89 40.94 3.56
5261 5559 9.897744 TCATCTCAGAAATTGTAATTTGTTCAC 57.102 29.630 7.27 0.00 38.64 3.18
5270 5568 8.239314 GCTTCATGTTCATCTCAGAAATTGTAA 58.761 33.333 0.00 0.00 0.00 2.41
5273 5571 6.527023 GTGCTTCATGTTCATCTCAGAAATTG 59.473 38.462 0.00 0.00 0.00 2.32
5275 5573 5.708697 TGTGCTTCATGTTCATCTCAGAAAT 59.291 36.000 0.00 0.00 0.00 2.17
5277 5575 4.644498 TGTGCTTCATGTTCATCTCAGAA 58.356 39.130 0.00 0.00 0.00 3.02
5278 5576 4.276058 TGTGCTTCATGTTCATCTCAGA 57.724 40.909 0.00 0.00 0.00 3.27
5279 5577 6.862711 ATATGTGCTTCATGTTCATCTCAG 57.137 37.500 0.00 0.00 37.91 3.35
5280 5578 8.373220 AGATATATGTGCTTCATGTTCATCTCA 58.627 33.333 0.00 0.00 37.91 3.27
5286 5584 9.552114 GCAATTAGATATATGTGCTTCATGTTC 57.448 33.333 0.00 1.36 37.91 3.18
5287 5585 9.293404 AGCAATTAGATATATGTGCTTCATGTT 57.707 29.630 0.00 0.00 39.19 2.71
5288 5586 8.727910 CAGCAATTAGATATATGTGCTTCATGT 58.272 33.333 3.27 2.21 40.22 3.21
5289 5587 8.943002 TCAGCAATTAGATATATGTGCTTCATG 58.057 33.333 3.27 0.00 40.22 3.07
5291 5589 8.907222 TTCAGCAATTAGATATATGTGCTTCA 57.093 30.769 3.27 0.00 40.22 3.02
5325 5623 8.308931 ACAAAAATATGTGCTTCATGTTCATCT 58.691 29.630 0.00 0.00 36.98 2.90
5327 5625 8.246908 CACAAAAATATGTGCTTCATGTTCAT 57.753 30.769 0.00 0.00 43.67 2.57
5398 6727 7.814587 GCAGTGGGCTGGAATAATATTTAATTC 59.185 37.037 0.00 0.00 42.78 2.17
5451 6780 7.175073 TGTTCACAATGCACACAAAAATATG 57.825 32.000 0.00 0.00 0.00 1.78
5452 6781 7.783090 TTGTTCACAATGCACACAAAAATAT 57.217 28.000 0.00 0.00 0.00 1.28
5782 7112 0.835543 CCATAGCCTCTCCCTCCAGG 60.836 65.000 0.00 0.00 0.00 4.45
6324 7688 4.487714 AGTTATGTCGTGGGATGACAAT 57.512 40.909 2.87 0.00 46.03 2.71
6414 7784 3.512329 TGCGAATCAGGTGACCTAGTTTA 59.488 43.478 2.59 0.00 29.64 2.01
6415 7785 2.301870 TGCGAATCAGGTGACCTAGTTT 59.698 45.455 2.59 0.00 29.64 2.66
6460 7831 0.738975 CAAGCTCGTGAGGATACGGA 59.261 55.000 0.00 0.00 43.85 4.69
6468 7839 1.802960 ACAGCAAATCAAGCTCGTGAG 59.197 47.619 0.00 0.00 41.14 3.51
6541 7913 9.594478 AAAAAGAGGTTTGGTGTACTAATTTTG 57.406 29.630 0.00 0.00 0.00 2.44
6551 8161 4.810345 TCCCATAAAAAGAGGTTTGGTGT 58.190 39.130 0.00 0.00 0.00 4.16
6561 8171 7.453126 TGCCTTTTAGTCATTCCCATAAAAAGA 59.547 33.333 0.00 0.00 35.50 2.52
6568 8178 4.646492 GTGATGCCTTTTAGTCATTCCCAT 59.354 41.667 0.00 0.00 0.00 4.00
6575 8185 3.559171 GGGACTGTGATGCCTTTTAGTCA 60.559 47.826 0.00 0.00 37.01 3.41
6603 8213 9.841880 GACCAAATTAGGAAGTTCAATTCTAAC 57.158 33.333 5.01 0.00 0.00 2.34
6648 8258 0.686769 AGAACAGTAGGGGCGTAGGG 60.687 60.000 0.00 0.00 0.00 3.53
6686 8296 3.817647 ACCTCTGCAGAAGAACAAATCAC 59.182 43.478 19.22 0.00 33.37 3.06
6687 8297 4.090761 ACCTCTGCAGAAGAACAAATCA 57.909 40.909 19.22 0.00 33.37 2.57
6928 8550 8.885722 GGTGATGGTTCGTTTATTCAGTTTATA 58.114 33.333 0.00 0.00 0.00 0.98
6933 8555 4.007659 GGGTGATGGTTCGTTTATTCAGT 58.992 43.478 0.00 0.00 0.00 3.41
6948 8570 3.672867 GTGCGTTTGTTTATTGGGTGATG 59.327 43.478 0.00 0.00 0.00 3.07
6949 8571 3.319405 TGTGCGTTTGTTTATTGGGTGAT 59.681 39.130 0.00 0.00 0.00 3.06
6950 8572 2.688446 TGTGCGTTTGTTTATTGGGTGA 59.312 40.909 0.00 0.00 0.00 4.02
6951 8573 3.085443 TGTGCGTTTGTTTATTGGGTG 57.915 42.857 0.00 0.00 0.00 4.61
6952 8574 3.131400 ACTTGTGCGTTTGTTTATTGGGT 59.869 39.130 0.00 0.00 0.00 4.51
7014 8643 6.273825 AGTATTAAGGACTTGCATACAGACG 58.726 40.000 13.95 0.00 0.00 4.18
7041 8674 1.005557 GCTGATCGTCGTCAATGCTTC 60.006 52.381 0.00 0.00 0.00 3.86
7124 8767 4.069232 CCCGTTGAGCGAGGCAGA 62.069 66.667 0.00 0.00 44.77 4.26
7129 8772 1.344942 CGAAGTTCCCGTTGAGCGAG 61.345 60.000 0.00 0.00 44.77 5.03
7155 8798 2.328099 GGCAAGCTGAAGACGGTGG 61.328 63.158 0.00 0.00 0.00 4.61
7260 8906 2.435410 CATCTGCGCTGCACAGGA 60.435 61.111 16.79 5.27 35.78 3.86
7317 8963 4.783621 TGCTCAGTGATGCCGGGC 62.784 66.667 13.32 13.32 0.00 6.13
7624 12240 2.997315 ACTGCGCTCCAGGCACTA 60.997 61.111 9.73 0.00 46.14 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.