Multiple sequence alignment - TraesCS2A01G276600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G276600 chr2A 100.000 2192 0 0 1 2192 457220647 457222838 0.000000e+00 4048.0
1 TraesCS2A01G276600 chr2A 90.496 242 22 1 231 471 606519317 606519076 3.510000e-83 318.0
2 TraesCS2A01G276600 chr2A 90.496 242 22 1 231 471 699240860 699241101 3.510000e-83 318.0
3 TraesCS2A01G276600 chr2A 88.889 162 13 4 1645 1802 585704271 585704111 6.170000e-46 195.0
4 TraesCS2A01G276600 chr2A 84.848 132 13 6 1635 1762 701781123 701781251 2.280000e-25 126.0
5 TraesCS2A01G276600 chr2D 87.600 1000 53 28 490 1458 345247586 345248545 0.000000e+00 1094.0
6 TraesCS2A01G276600 chr2D 91.561 237 19 1 236 471 455942474 455942238 2.100000e-85 326.0
7 TraesCS2A01G276600 chr2D 88.235 272 26 5 203 471 380694571 380694303 9.760000e-84 320.0
8 TraesCS2A01G276600 chr2D 88.679 212 11 5 1929 2139 345249536 345249735 1.680000e-61 246.0
9 TraesCS2A01G276600 chr2D 92.593 162 9 2 1654 1813 150887021 150887181 1.690000e-56 230.0
10 TraesCS2A01G276600 chr2D 89.062 192 8 7 1 181 345247392 345247581 2.190000e-55 226.0
11 TraesCS2A01G276600 chr2B 93.042 618 29 8 877 1486 410942881 410943492 0.000000e+00 891.0
12 TraesCS2A01G276600 chr2B 86.486 259 20 8 490 746 410942325 410942570 9.970000e-69 270.0
13 TraesCS2A01G276600 chr2B 91.579 190 7 3 1 181 410942102 410942291 1.000000e-63 254.0
14 TraesCS2A01G276600 chr2B 82.182 275 14 19 1937 2192 410943622 410943880 1.030000e-48 204.0
15 TraesCS2A01G276600 chr2B 82.609 115 18 2 1540 1653 724397400 724397513 1.380000e-17 100.0
16 TraesCS2A01G276600 chr1D 80.192 626 56 33 807 1398 471848751 471849342 7.290000e-110 407.0
17 TraesCS2A01G276600 chr1D 94.737 152 5 2 1653 1802 322624767 322624917 1.310000e-57 233.0
18 TraesCS2A01G276600 chr1B 79.708 616 60 37 815 1398 655858473 655859055 3.410000e-103 385.0
19 TraesCS2A01G276600 chr1B 93.617 47 0 1 1523 1569 498079128 498079171 1.400000e-07 67.6
20 TraesCS2A01G276600 chr1A 79.048 630 58 38 814 1398 566123769 566124369 4.450000e-97 364.0
21 TraesCS2A01G276600 chr1A 87.209 86 8 1 547 632 566123573 566123655 6.440000e-16 95.3
22 TraesCS2A01G276600 chr7A 92.083 240 17 2 234 471 60605230 60604991 9.700000e-89 337.0
23 TraesCS2A01G276600 chr7A 90.496 242 22 1 231 471 669666611 669666370 3.510000e-83 318.0
24 TraesCS2A01G276600 chr7A 85.714 161 16 5 1642 1799 63776634 63776790 1.740000e-36 163.0
25 TraesCS2A01G276600 chr3D 90.909 242 20 2 231 471 305497158 305497398 7.550000e-85 324.0
26 TraesCS2A01G276600 chr3D 94.631 149 7 1 1654 1802 491847337 491847190 1.690000e-56 230.0
27 TraesCS2A01G276600 chr5A 91.139 237 20 1 236 471 336841446 336841682 9.760000e-84 320.0
28 TraesCS2A01G276600 chr5A 82.000 150 19 6 1519 1663 671164175 671164029 1.060000e-23 121.0
29 TraesCS2A01G276600 chr4B 90.496 242 22 1 231 471 22857611 22857370 3.510000e-83 318.0
30 TraesCS2A01G276600 chr4B 85.034 147 14 5 1523 1663 447455464 447455320 2.270000e-30 143.0
31 TraesCS2A01G276600 chr5D 92.949 156 8 2 1649 1802 305850408 305850254 7.880000e-55 224.0
32 TraesCS2A01G276600 chr5D 91.411 163 11 2 1653 1813 497392885 497392724 1.020000e-53 220.0
33 TraesCS2A01G276600 chr5D 91.411 163 11 2 1653 1813 497393915 497393754 1.020000e-53 220.0
34 TraesCS2A01G276600 chr5D 91.358 162 11 2 1653 1812 497461377 497461217 3.660000e-53 219.0
35 TraesCS2A01G276600 chr5D 79.348 92 11 6 1521 1607 552700081 552700169 8.450000e-05 58.4
36 TraesCS2A01G276600 chr4D 91.975 162 9 3 1644 1802 31054547 31054387 7.880000e-55 224.0
37 TraesCS2A01G276600 chrUn 91.411 163 11 2 1653 1813 329701517 329701356 1.020000e-53 220.0
38 TraesCS2A01G276600 chr3A 87.671 73 6 3 1803 1874 24786366 24786296 5.020000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G276600 chr2A 457220647 457222838 2191 False 4048.00 4048 100.00000 1 2192 1 chr2A.!!$F1 2191
1 TraesCS2A01G276600 chr2D 345247392 345249735 2343 False 522.00 1094 88.44700 1 2139 3 chr2D.!!$F2 2138
2 TraesCS2A01G276600 chr2B 410942102 410943880 1778 False 404.75 891 88.32225 1 2192 4 chr2B.!!$F2 2191
3 TraesCS2A01G276600 chr1D 471848751 471849342 591 False 407.00 407 80.19200 807 1398 1 chr1D.!!$F2 591
4 TraesCS2A01G276600 chr1B 655858473 655859055 582 False 385.00 385 79.70800 815 1398 1 chr1B.!!$F2 583
5 TraesCS2A01G276600 chr1A 566123573 566124369 796 False 229.65 364 83.12850 547 1398 2 chr1A.!!$F1 851
6 TraesCS2A01G276600 chr5D 497392724 497393915 1191 True 220.00 220 91.41100 1653 1813 2 chr5D.!!$R3 160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 534 0.178909 ATTGCCATGGGTTGGGTTGA 60.179 50.0 15.13 0.0 46.55 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 4301 0.036952 CAGCAGTCTCGGTTCCACAT 60.037 55.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 1.271379 AGACACGCATCGTCCTTGTTA 59.729 47.619 0.00 0.00 38.32 2.41
139 148 2.224079 TCGTGTTCACTGTCGTACTACC 59.776 50.000 1.53 0.00 0.00 3.18
150 159 3.189910 TGTCGTACTACCACTGCTACTTG 59.810 47.826 0.00 0.00 0.00 3.16
166 175 6.999950 TGCTACTTGGTCAAGAAATACTGTA 58.000 36.000 16.55 0.00 40.79 2.74
171 182 3.259876 TGGTCAAGAAATACTGTAGCCGT 59.740 43.478 0.00 0.00 0.00 5.68
181 192 1.073284 ACTGTAGCCGTTGGACCAAAT 59.927 47.619 8.94 0.00 0.00 2.32
183 194 1.202830 TGTAGCCGTTGGACCAAATGT 60.203 47.619 8.94 0.00 0.00 2.71
185 196 2.507407 AGCCGTTGGACCAAATGTAT 57.493 45.000 8.94 0.00 0.00 2.29
186 197 2.365582 AGCCGTTGGACCAAATGTATC 58.634 47.619 8.94 0.00 0.00 2.24
187 198 1.063469 GCCGTTGGACCAAATGTATCG 59.937 52.381 8.94 7.08 0.00 2.92
188 199 2.352388 CCGTTGGACCAAATGTATCGT 58.648 47.619 8.94 0.00 0.00 3.73
189 200 2.095213 CCGTTGGACCAAATGTATCGTG 59.905 50.000 8.94 0.00 0.00 4.35
190 201 2.739913 CGTTGGACCAAATGTATCGTGT 59.260 45.455 8.94 0.00 0.00 4.49
191 202 3.927758 CGTTGGACCAAATGTATCGTGTA 59.072 43.478 8.94 0.00 0.00 2.90
192 203 4.569162 CGTTGGACCAAATGTATCGTGTAT 59.431 41.667 8.94 0.00 0.00 2.29
193 204 5.276678 CGTTGGACCAAATGTATCGTGTATC 60.277 44.000 8.94 0.00 0.00 2.24
194 205 5.607939 TGGACCAAATGTATCGTGTATCT 57.392 39.130 0.00 0.00 0.00 1.98
195 206 5.984725 TGGACCAAATGTATCGTGTATCTT 58.015 37.500 0.00 0.00 0.00 2.40
196 207 7.114866 TGGACCAAATGTATCGTGTATCTTA 57.885 36.000 0.00 0.00 0.00 2.10
197 208 7.557724 TGGACCAAATGTATCGTGTATCTTAA 58.442 34.615 0.00 0.00 0.00 1.85
198 209 8.208224 TGGACCAAATGTATCGTGTATCTTAAT 58.792 33.333 0.00 0.00 0.00 1.40
199 210 8.495949 GGACCAAATGTATCGTGTATCTTAATG 58.504 37.037 0.00 0.00 0.00 1.90
200 211 8.958119 ACCAAATGTATCGTGTATCTTAATGT 57.042 30.769 0.00 0.00 0.00 2.71
201 212 9.042008 ACCAAATGTATCGTGTATCTTAATGTC 57.958 33.333 0.00 0.00 0.00 3.06
227 238 4.448537 AGAGTTCGAGTCAGAAAGGATG 57.551 45.455 0.00 0.00 0.00 3.51
228 239 3.829601 AGAGTTCGAGTCAGAAAGGATGT 59.170 43.478 0.00 0.00 0.00 3.06
229 240 5.010933 AGAGTTCGAGTCAGAAAGGATGTA 58.989 41.667 0.00 0.00 0.00 2.29
230 241 5.061920 AGTTCGAGTCAGAAAGGATGTAC 57.938 43.478 0.00 0.00 0.00 2.90
231 242 4.767928 AGTTCGAGTCAGAAAGGATGTACT 59.232 41.667 0.00 0.00 0.00 2.73
232 243 4.966965 TCGAGTCAGAAAGGATGTACTC 57.033 45.455 0.00 0.00 0.00 2.59
233 244 4.590918 TCGAGTCAGAAAGGATGTACTCT 58.409 43.478 0.00 0.00 32.96 3.24
234 245 4.396478 TCGAGTCAGAAAGGATGTACTCTG 59.604 45.833 0.00 0.00 37.28 3.35
235 246 4.156922 CGAGTCAGAAAGGATGTACTCTGT 59.843 45.833 7.26 0.00 37.25 3.41
236 247 5.336055 CGAGTCAGAAAGGATGTACTCTGTT 60.336 44.000 7.26 0.00 37.25 3.16
237 248 6.426646 AGTCAGAAAGGATGTACTCTGTTT 57.573 37.500 7.26 0.00 37.25 2.83
238 249 6.831976 AGTCAGAAAGGATGTACTCTGTTTT 58.168 36.000 7.26 0.00 37.25 2.43
239 250 7.283329 AGTCAGAAAGGATGTACTCTGTTTTT 58.717 34.615 7.26 0.00 37.25 1.94
240 251 8.429641 AGTCAGAAAGGATGTACTCTGTTTTTA 58.570 33.333 7.26 0.00 37.25 1.52
241 252 9.220767 GTCAGAAAGGATGTACTCTGTTTTTAT 57.779 33.333 7.26 0.00 37.25 1.40
242 253 9.793259 TCAGAAAGGATGTACTCTGTTTTTATT 57.207 29.630 7.26 0.00 37.25 1.40
250 261 9.974750 GATGTACTCTGTTTTTATTTACTCTGC 57.025 33.333 0.00 0.00 0.00 4.26
251 262 8.896320 TGTACTCTGTTTTTATTTACTCTGCA 57.104 30.769 0.00 0.00 0.00 4.41
252 263 9.502091 TGTACTCTGTTTTTATTTACTCTGCAT 57.498 29.630 0.00 0.00 0.00 3.96
266 277 8.492673 TTTACTCTGCATATTAGGTTTGACTG 57.507 34.615 0.00 0.00 0.00 3.51
267 278 6.299805 ACTCTGCATATTAGGTTTGACTGA 57.700 37.500 0.00 0.00 0.00 3.41
268 279 6.711277 ACTCTGCATATTAGGTTTGACTGAA 58.289 36.000 0.00 0.00 0.00 3.02
269 280 6.820656 ACTCTGCATATTAGGTTTGACTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
270 281 6.711277 TCTGCATATTAGGTTTGACTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
271 282 6.818644 TCTGCATATTAGGTTTGACTGAAGTC 59.181 38.462 3.41 3.41 44.97 3.01
334 345 7.604657 ACAAACATTTACCCTAACAAATCCA 57.395 32.000 0.00 0.00 0.00 3.41
335 346 8.201242 ACAAACATTTACCCTAACAAATCCAT 57.799 30.769 0.00 0.00 0.00 3.41
336 347 9.315363 ACAAACATTTACCCTAACAAATCCATA 57.685 29.630 0.00 0.00 0.00 2.74
339 350 9.707957 AACATTTACCCTAACAAATCCATATGA 57.292 29.630 3.65 0.00 0.00 2.15
340 351 9.131791 ACATTTACCCTAACAAATCCATATGAC 57.868 33.333 3.65 0.00 0.00 3.06
341 352 7.795482 TTTACCCTAACAAATCCATATGACG 57.205 36.000 3.65 0.00 0.00 4.35
342 353 5.367945 ACCCTAACAAATCCATATGACGT 57.632 39.130 3.65 0.00 0.00 4.34
343 354 5.123227 ACCCTAACAAATCCATATGACGTG 58.877 41.667 3.65 0.00 0.00 4.49
344 355 5.104693 ACCCTAACAAATCCATATGACGTGA 60.105 40.000 3.65 0.00 0.00 4.35
345 356 5.820423 CCCTAACAAATCCATATGACGTGAA 59.180 40.000 3.65 0.00 0.00 3.18
346 357 6.317642 CCCTAACAAATCCATATGACGTGAAA 59.682 38.462 3.65 0.00 0.00 2.69
347 358 7.409697 CCTAACAAATCCATATGACGTGAAAG 58.590 38.462 3.65 1.18 0.00 2.62
348 359 6.817765 AACAAATCCATATGACGTGAAAGT 57.182 33.333 3.65 0.00 0.00 2.66
349 360 7.915293 AACAAATCCATATGACGTGAAAGTA 57.085 32.000 3.65 0.00 0.00 2.24
350 361 7.303634 ACAAATCCATATGACGTGAAAGTAC 57.696 36.000 3.65 0.00 0.00 2.73
351 362 6.876789 ACAAATCCATATGACGTGAAAGTACA 59.123 34.615 3.65 0.00 0.00 2.90
352 363 7.552687 ACAAATCCATATGACGTGAAAGTACAT 59.447 33.333 3.65 0.00 0.00 2.29
353 364 8.397906 CAAATCCATATGACGTGAAAGTACATT 58.602 33.333 3.65 0.00 0.00 2.71
354 365 7.715265 ATCCATATGACGTGAAAGTACATTC 57.285 36.000 3.65 3.88 0.00 2.67
355 366 6.635755 TCCATATGACGTGAAAGTACATTCA 58.364 36.000 9.38 9.38 36.99 2.57
356 367 7.100409 TCCATATGACGTGAAAGTACATTCAA 58.900 34.615 14.64 0.60 40.76 2.69
357 368 7.768582 TCCATATGACGTGAAAGTACATTCAAT 59.231 33.333 14.64 6.81 40.76 2.57
358 369 9.040939 CCATATGACGTGAAAGTACATTCAATA 57.959 33.333 14.64 9.55 40.76 1.90
362 373 8.541133 TGACGTGAAAGTACATTCAATAATGA 57.459 30.769 14.64 0.00 44.50 2.57
445 456 5.891451 AGTTTACAAAGTTTGACCTTGAGC 58.109 37.500 22.23 0.00 0.00 4.26
446 457 5.417580 AGTTTACAAAGTTTGACCTTGAGCA 59.582 36.000 22.23 0.00 0.00 4.26
447 458 5.906113 TTACAAAGTTTGACCTTGAGCAA 57.094 34.783 22.23 0.00 0.00 3.91
448 459 4.799564 ACAAAGTTTGACCTTGAGCAAA 57.200 36.364 22.23 0.00 0.00 3.68
449 460 4.747810 ACAAAGTTTGACCTTGAGCAAAG 58.252 39.130 22.23 0.00 34.95 2.77
450 461 3.443099 AAGTTTGACCTTGAGCAAAGC 57.557 42.857 0.00 0.00 34.95 3.51
451 462 2.659428 AGTTTGACCTTGAGCAAAGCT 58.341 42.857 0.00 0.00 43.88 3.74
452 463 3.820557 AGTTTGACCTTGAGCAAAGCTA 58.179 40.909 0.00 0.00 39.88 3.32
453 464 4.207165 AGTTTGACCTTGAGCAAAGCTAA 58.793 39.130 0.00 0.00 39.88 3.09
454 465 4.829492 AGTTTGACCTTGAGCAAAGCTAAT 59.171 37.500 0.00 0.00 39.88 1.73
455 466 6.003950 AGTTTGACCTTGAGCAAAGCTAATA 58.996 36.000 0.00 0.00 39.88 0.98
456 467 5.880054 TTGACCTTGAGCAAAGCTAATAC 57.120 39.130 0.00 0.00 39.88 1.89
457 468 3.932710 TGACCTTGAGCAAAGCTAATACG 59.067 43.478 0.00 0.00 39.88 3.06
458 469 3.933332 GACCTTGAGCAAAGCTAATACGT 59.067 43.478 0.00 0.00 39.88 3.57
459 470 3.684788 ACCTTGAGCAAAGCTAATACGTG 59.315 43.478 0.00 0.00 39.88 4.49
460 471 3.063997 CCTTGAGCAAAGCTAATACGTGG 59.936 47.826 0.00 0.00 39.88 4.94
461 472 3.603158 TGAGCAAAGCTAATACGTGGA 57.397 42.857 0.00 0.00 39.88 4.02
462 473 4.137116 TGAGCAAAGCTAATACGTGGAT 57.863 40.909 0.00 0.00 39.88 3.41
463 474 4.513442 TGAGCAAAGCTAATACGTGGATT 58.487 39.130 0.00 0.00 39.88 3.01
464 475 5.666462 TGAGCAAAGCTAATACGTGGATTA 58.334 37.500 0.00 0.00 39.88 1.75
465 476 6.110033 TGAGCAAAGCTAATACGTGGATTAA 58.890 36.000 0.00 0.00 39.88 1.40
466 477 6.596106 TGAGCAAAGCTAATACGTGGATTAAA 59.404 34.615 0.00 0.00 39.88 1.52
467 478 7.282224 TGAGCAAAGCTAATACGTGGATTAAAT 59.718 33.333 0.00 0.00 39.88 1.40
468 479 8.671384 AGCAAAGCTAATACGTGGATTAAATA 57.329 30.769 0.00 0.00 36.99 1.40
469 480 9.116067 AGCAAAGCTAATACGTGGATTAAATAA 57.884 29.630 0.00 0.00 36.99 1.40
470 481 9.724839 GCAAAGCTAATACGTGGATTAAATAAA 57.275 29.630 0.00 0.00 0.00 1.40
504 515 4.849810 AGGGGCAATATATGTTGGTAGCTA 59.150 41.667 13.35 0.00 0.00 3.32
513 524 2.653726 TGTTGGTAGCTATTGCCATGG 58.346 47.619 7.63 7.63 41.54 3.66
514 525 1.956477 GTTGGTAGCTATTGCCATGGG 59.044 52.381 15.13 0.00 41.54 4.00
516 527 1.568597 TGGTAGCTATTGCCATGGGTT 59.431 47.619 15.13 0.00 36.55 4.11
519 530 0.397535 AGCTATTGCCATGGGTTGGG 60.398 55.000 15.13 0.00 46.55 4.12
520 531 0.687427 GCTATTGCCATGGGTTGGGT 60.687 55.000 15.13 0.00 46.55 4.51
521 532 1.864669 CTATTGCCATGGGTTGGGTT 58.135 50.000 15.13 0.00 46.55 4.11
523 534 0.178909 ATTGCCATGGGTTGGGTTGA 60.179 50.000 15.13 0.00 46.55 3.18
524 535 0.399091 TTGCCATGGGTTGGGTTGAA 60.399 50.000 15.13 0.00 46.55 2.69
525 536 0.178909 TGCCATGGGTTGGGTTGAAT 60.179 50.000 15.13 0.00 46.55 2.57
526 537 0.983467 GCCATGGGTTGGGTTGAATT 59.017 50.000 15.13 0.00 46.55 2.17
527 538 2.183679 GCCATGGGTTGGGTTGAATTA 58.816 47.619 15.13 0.00 46.55 1.40
528 539 2.569404 GCCATGGGTTGGGTTGAATTAA 59.431 45.455 15.13 0.00 46.55 1.40
529 540 3.369366 GCCATGGGTTGGGTTGAATTAAG 60.369 47.826 15.13 0.00 46.55 1.85
530 541 3.837731 CCATGGGTTGGGTTGAATTAAGT 59.162 43.478 2.85 0.00 42.33 2.24
534 545 5.707495 TGGGTTGGGTTGAATTAAGTAACT 58.293 37.500 0.00 0.00 0.00 2.24
554 565 4.836825 ACTAACTGATGTCTTGTCCATGG 58.163 43.478 4.97 4.97 0.00 3.66
634 646 2.423577 AGGTAAATCAACGGTGCTGAC 58.576 47.619 0.00 0.00 0.00 3.51
656 668 2.159680 CGTCTCTAAGGTCTGTGTCGAC 60.160 54.545 9.11 9.11 0.00 4.20
657 669 2.074576 TCTCTAAGGTCTGTGTCGACG 58.925 52.381 11.62 0.00 34.75 5.12
777 797 1.875963 GCATGTGTGTGCACCTACC 59.124 57.895 15.69 0.00 44.65 3.18
798 818 1.684734 CTACGTGCACCTACCCCCT 60.685 63.158 12.15 0.00 0.00 4.79
799 819 1.673808 CTACGTGCACCTACCCCCTC 61.674 65.000 12.15 0.00 0.00 4.30
800 820 2.159101 TACGTGCACCTACCCCCTCT 62.159 60.000 12.15 0.00 0.00 3.69
801 821 2.722201 CGTGCACCTACCCCCTCTC 61.722 68.421 12.15 0.00 0.00 3.20
802 822 1.612442 GTGCACCTACCCCCTCTCA 60.612 63.158 5.22 0.00 0.00 3.27
803 823 1.612442 TGCACCTACCCCCTCTCAC 60.612 63.158 0.00 0.00 0.00 3.51
804 824 2.722201 GCACCTACCCCCTCTCACG 61.722 68.421 0.00 0.00 0.00 4.35
805 825 2.058595 CACCTACCCCCTCTCACGG 61.059 68.421 0.00 0.00 0.00 4.94
823 843 7.232188 TCTCACGGTCTCACCTCTATATAAAT 58.768 38.462 0.00 0.00 35.66 1.40
830 851 7.390996 GGTCTCACCTCTATATAAATCGAGACA 59.609 40.741 19.86 0.00 45.43 3.41
989 1217 1.810606 CTGTCTCCCGTCTGCACAGT 61.811 60.000 0.00 0.00 31.59 3.55
1144 1378 0.761187 CGGGATGGTGATGGAGATGT 59.239 55.000 0.00 0.00 0.00 3.06
1272 1535 6.935167 TCTCTTTTTCTTTTTGCCTCTTTGT 58.065 32.000 0.00 0.00 0.00 2.83
1357 1624 9.052759 CAACAAAGGTCTAACTGTAACTATGTT 57.947 33.333 0.00 0.00 0.00 2.71
1359 1626 9.702494 ACAAAGGTCTAACTGTAACTATGTTAC 57.298 33.333 12.15 12.15 0.00 2.50
1414 1685 0.107703 ATCGGTGGCAGTGTGTATGG 60.108 55.000 0.00 0.00 0.00 2.74
1426 1697 2.939103 GTGTGTATGGATTGTCTCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
1442 1713 4.003648 CTCTGGCCTTAAATGTTTCGACT 58.996 43.478 3.32 0.00 0.00 4.18
1475 2616 1.299850 GCTTTTGCGTCCCCACAAC 60.300 57.895 0.00 0.00 34.86 3.32
1481 2622 1.065109 GCGTCCCCACAACAACAAC 59.935 57.895 0.00 0.00 0.00 3.32
1530 2686 9.139174 ACTCTTTGCATTTTATTTACGGAAATG 57.861 29.630 16.10 0.87 41.41 2.32
1531 2687 9.352784 CTCTTTGCATTTTATTTACGGAAATGA 57.647 29.630 16.10 4.47 41.14 2.57
1532 2688 9.868277 TCTTTGCATTTTATTTACGGAAATGAT 57.132 25.926 16.10 4.48 41.14 2.45
1540 2696 5.761165 ATTTACGGAAATGATAAACCCCG 57.239 39.130 4.38 0.00 42.30 5.73
1541 2697 2.793288 ACGGAAATGATAAACCCCGT 57.207 45.000 0.00 0.00 44.37 5.28
1542 2698 3.076079 ACGGAAATGATAAACCCCGTT 57.924 42.857 0.00 0.00 46.64 4.44
1543 2699 3.011818 ACGGAAATGATAAACCCCGTTC 58.988 45.455 0.00 0.00 46.64 3.95
1544 2700 2.031191 CGGAAATGATAAACCCCGTTCG 59.969 50.000 0.00 0.00 33.02 3.95
1545 2701 2.356695 GGAAATGATAAACCCCGTTCGG 59.643 50.000 4.08 4.08 0.00 4.30
1546 2702 3.272581 GAAATGATAAACCCCGTTCGGA 58.727 45.455 13.08 0.00 0.00 4.55
1547 2703 3.570912 AATGATAAACCCCGTTCGGAT 57.429 42.857 13.08 0.00 0.00 4.18
1548 2704 3.570912 ATGATAAACCCCGTTCGGATT 57.429 42.857 13.08 7.33 0.00 3.01
1549 2705 3.353370 TGATAAACCCCGTTCGGATTT 57.647 42.857 13.08 13.84 0.00 2.17
1550 2706 3.688235 TGATAAACCCCGTTCGGATTTT 58.312 40.909 13.08 12.53 0.00 1.82
1551 2707 4.841422 TGATAAACCCCGTTCGGATTTTA 58.159 39.130 13.08 14.06 0.00 1.52
1552 2708 5.251764 TGATAAACCCCGTTCGGATTTTAA 58.748 37.500 13.08 0.53 0.00 1.52
1553 2709 5.354792 TGATAAACCCCGTTCGGATTTTAAG 59.645 40.000 13.08 0.00 0.00 1.85
1554 2710 1.456296 ACCCCGTTCGGATTTTAAGC 58.544 50.000 13.08 0.00 0.00 3.09
1555 2711 1.271488 ACCCCGTTCGGATTTTAAGCA 60.271 47.619 13.08 0.00 0.00 3.91
1556 2712 2.021457 CCCCGTTCGGATTTTAAGCAT 58.979 47.619 13.08 0.00 0.00 3.79
1557 2713 2.223479 CCCCGTTCGGATTTTAAGCATG 60.223 50.000 13.08 0.00 0.00 4.06
1558 2714 2.680841 CCCGTTCGGATTTTAAGCATGA 59.319 45.455 13.08 0.00 0.00 3.07
1559 2715 3.486875 CCCGTTCGGATTTTAAGCATGAC 60.487 47.826 13.08 0.00 0.00 3.06
1560 2716 3.126171 CCGTTCGGATTTTAAGCATGACA 59.874 43.478 5.19 0.00 0.00 3.58
1561 2717 4.378978 CCGTTCGGATTTTAAGCATGACAA 60.379 41.667 5.19 0.00 0.00 3.18
1562 2718 4.553429 CGTTCGGATTTTAAGCATGACAAC 59.447 41.667 0.00 0.00 0.00 3.32
1563 2719 4.695217 TCGGATTTTAAGCATGACAACC 57.305 40.909 0.00 0.00 0.00 3.77
1564 2720 3.442273 TCGGATTTTAAGCATGACAACCC 59.558 43.478 0.00 0.00 0.00 4.11
1565 2721 3.730662 CGGATTTTAAGCATGACAACCCG 60.731 47.826 0.00 0.00 0.00 5.28
1566 2722 3.442273 GGATTTTAAGCATGACAACCCGA 59.558 43.478 0.00 0.00 0.00 5.14
1567 2723 4.082463 GGATTTTAAGCATGACAACCCGAA 60.082 41.667 0.00 0.00 0.00 4.30
1568 2724 3.907894 TTTAAGCATGACAACCCGAAC 57.092 42.857 0.00 0.00 0.00 3.95
1569 2725 2.552599 TAAGCATGACAACCCGAACA 57.447 45.000 0.00 0.00 0.00 3.18
1570 2726 1.909700 AAGCATGACAACCCGAACAT 58.090 45.000 0.00 0.00 0.00 2.71
1571 2727 1.909700 AGCATGACAACCCGAACATT 58.090 45.000 0.00 0.00 0.00 2.71
1572 2728 2.238521 AGCATGACAACCCGAACATTT 58.761 42.857 0.00 0.00 0.00 2.32
1573 2729 2.228822 AGCATGACAACCCGAACATTTC 59.771 45.455 0.00 0.00 0.00 2.17
1574 2730 2.228822 GCATGACAACCCGAACATTTCT 59.771 45.455 0.00 0.00 0.00 2.52
1575 2731 3.670627 GCATGACAACCCGAACATTTCTC 60.671 47.826 0.00 0.00 0.00 2.87
1576 2732 3.201353 TGACAACCCGAACATTTCTCA 57.799 42.857 0.00 0.00 0.00 3.27
1577 2733 3.750371 TGACAACCCGAACATTTCTCAT 58.250 40.909 0.00 0.00 0.00 2.90
1578 2734 4.900684 TGACAACCCGAACATTTCTCATA 58.099 39.130 0.00 0.00 0.00 2.15
1579 2735 4.693566 TGACAACCCGAACATTTCTCATAC 59.306 41.667 0.00 0.00 0.00 2.39
1580 2736 4.906618 ACAACCCGAACATTTCTCATACT 58.093 39.130 0.00 0.00 0.00 2.12
1581 2737 6.045072 ACAACCCGAACATTTCTCATACTA 57.955 37.500 0.00 0.00 0.00 1.82
1582 2738 6.469410 ACAACCCGAACATTTCTCATACTAA 58.531 36.000 0.00 0.00 0.00 2.24
1583 2739 6.370718 ACAACCCGAACATTTCTCATACTAAC 59.629 38.462 0.00 0.00 0.00 2.34
1584 2740 6.295719 ACCCGAACATTTCTCATACTAACT 57.704 37.500 0.00 0.00 0.00 2.24
1585 2741 6.708285 ACCCGAACATTTCTCATACTAACTT 58.292 36.000 0.00 0.00 0.00 2.66
1586 2742 7.166167 ACCCGAACATTTCTCATACTAACTTT 58.834 34.615 0.00 0.00 0.00 2.66
1587 2743 8.316214 ACCCGAACATTTCTCATACTAACTTTA 58.684 33.333 0.00 0.00 0.00 1.85
1588 2744 8.818057 CCCGAACATTTCTCATACTAACTTTAG 58.182 37.037 0.00 0.00 36.82 1.85
1589 2745 9.367444 CCGAACATTTCTCATACTAACTTTAGT 57.633 33.333 6.85 6.85 45.39 2.24
1595 2751 7.807687 TTCTCATACTAACTTTAGTTCACGC 57.192 36.000 6.95 0.00 40.96 5.34
1596 2752 6.916440 TCTCATACTAACTTTAGTTCACGCA 58.084 36.000 6.95 0.00 40.96 5.24
1597 2753 7.372714 TCTCATACTAACTTTAGTTCACGCAA 58.627 34.615 6.95 0.00 40.96 4.85
1598 2754 7.541091 TCTCATACTAACTTTAGTTCACGCAAG 59.459 37.037 6.95 0.00 40.96 4.01
1599 2755 7.372714 TCATACTAACTTTAGTTCACGCAAGA 58.627 34.615 6.95 0.00 40.96 3.02
1600 2756 8.033038 TCATACTAACTTTAGTTCACGCAAGAT 58.967 33.333 6.95 0.00 40.96 2.40
1601 2757 8.656849 CATACTAACTTTAGTTCACGCAAGATT 58.343 33.333 6.95 0.00 40.96 2.40
1602 2758 6.888430 ACTAACTTTAGTTCACGCAAGATTG 58.112 36.000 0.00 0.00 40.96 2.67
1603 2759 4.749245 ACTTTAGTTCACGCAAGATTGG 57.251 40.909 0.00 0.00 43.62 3.16
1604 2760 3.058224 ACTTTAGTTCACGCAAGATTGGC 60.058 43.478 0.00 0.00 43.62 4.52
1605 2761 2.177394 TAGTTCACGCAAGATTGGCA 57.823 45.000 0.00 0.00 43.62 4.92
1606 2762 1.317613 AGTTCACGCAAGATTGGCAA 58.682 45.000 0.68 0.68 43.62 4.52
1607 2763 1.680735 AGTTCACGCAAGATTGGCAAA 59.319 42.857 3.01 0.00 43.62 3.68
1608 2764 1.786579 GTTCACGCAAGATTGGCAAAC 59.213 47.619 3.01 0.42 43.62 2.93
1609 2765 1.028130 TCACGCAAGATTGGCAAACA 58.972 45.000 3.01 0.00 43.62 2.83
1610 2766 1.612950 TCACGCAAGATTGGCAAACAT 59.387 42.857 3.01 0.00 43.62 2.71
1611 2767 1.722464 CACGCAAGATTGGCAAACATG 59.278 47.619 3.01 6.15 43.62 3.21
1612 2768 1.612950 ACGCAAGATTGGCAAACATGA 59.387 42.857 15.51 0.00 43.62 3.07
1613 2769 2.231964 ACGCAAGATTGGCAAACATGAT 59.768 40.909 15.51 1.37 43.62 2.45
1614 2770 3.443329 ACGCAAGATTGGCAAACATGATA 59.557 39.130 15.51 0.00 43.62 2.15
1615 2771 4.082300 ACGCAAGATTGGCAAACATGATAA 60.082 37.500 15.51 0.00 43.62 1.75
1616 2772 5.045215 CGCAAGATTGGCAAACATGATAAT 58.955 37.500 15.51 0.00 43.02 1.28
1617 2773 5.521010 CGCAAGATTGGCAAACATGATAATT 59.479 36.000 15.51 0.00 43.02 1.40
1618 2774 6.036300 CGCAAGATTGGCAAACATGATAATTT 59.964 34.615 15.51 0.00 43.02 1.82
1619 2775 7.413219 CGCAAGATTGGCAAACATGATAATTTT 60.413 33.333 15.51 0.00 43.02 1.82
1620 2776 7.906527 GCAAGATTGGCAAACATGATAATTTTC 59.093 33.333 15.51 0.00 0.00 2.29
1621 2777 9.158233 CAAGATTGGCAAACATGATAATTTTCT 57.842 29.630 3.01 0.00 0.00 2.52
1622 2778 8.712285 AGATTGGCAAACATGATAATTTTCTG 57.288 30.769 3.01 0.00 0.00 3.02
1623 2779 8.533657 AGATTGGCAAACATGATAATTTTCTGA 58.466 29.630 3.01 0.00 0.00 3.27
1624 2780 7.887996 TTGGCAAACATGATAATTTTCTGAC 57.112 32.000 0.00 0.00 0.00 3.51
1625 2781 6.990798 TGGCAAACATGATAATTTTCTGACA 58.009 32.000 0.00 0.00 0.00 3.58
1626 2782 7.440198 TGGCAAACATGATAATTTTCTGACAA 58.560 30.769 0.00 0.00 0.00 3.18
1627 2783 7.930325 TGGCAAACATGATAATTTTCTGACAAA 59.070 29.630 0.00 0.00 0.00 2.83
1628 2784 8.772705 GGCAAACATGATAATTTTCTGACAAAA 58.227 29.630 0.00 0.00 0.00 2.44
1648 2804 4.718940 AAAACAGACTGGGACAAAGTTG 57.281 40.909 7.51 0.00 38.70 3.16
1649 2805 3.366052 AACAGACTGGGACAAAGTTGT 57.634 42.857 7.51 0.00 45.65 3.32
1688 2844 2.127251 CAGACGCAAGCGCTCATATAA 58.873 47.619 12.06 0.00 44.19 0.98
1719 3904 0.469917 CTCACCCCCTATGAACGCAT 59.530 55.000 0.00 0.00 38.54 4.73
1747 3934 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
1762 3949 0.832135 ACCTCCGAAAGACTGAGCCA 60.832 55.000 0.00 0.00 0.00 4.75
1767 3954 3.628008 TCCGAAAGACTGAGCCAGTATA 58.372 45.455 7.69 0.00 45.44 1.47
1802 3989 0.527817 CGAAGTCATCGTAGGCACCC 60.528 60.000 0.00 0.00 46.52 4.61
1804 3991 1.623542 AAGTCATCGTAGGCACCCCC 61.624 60.000 0.00 0.00 0.00 5.40
1805 3992 2.039787 TCATCGTAGGCACCCCCA 59.960 61.111 0.00 0.00 35.39 4.96
1813 4000 4.265056 GGCACCCCCACGTCAACT 62.265 66.667 0.00 0.00 0.00 3.16
1814 4001 2.745037 GCACCCCCACGTCAACTA 59.255 61.111 0.00 0.00 0.00 2.24
1815 4002 1.071814 GCACCCCCACGTCAACTAA 59.928 57.895 0.00 0.00 0.00 2.24
1816 4003 0.535553 GCACCCCCACGTCAACTAAA 60.536 55.000 0.00 0.00 0.00 1.85
1817 4004 1.519408 CACCCCCACGTCAACTAAAG 58.481 55.000 0.00 0.00 0.00 1.85
1818 4005 1.134228 ACCCCCACGTCAACTAAAGT 58.866 50.000 0.00 0.00 0.00 2.66
1819 4006 1.491754 ACCCCCACGTCAACTAAAGTT 59.508 47.619 0.00 0.00 39.12 2.66
1848 4035 3.764885 AAAACGTTAGAGATGGCATGC 57.235 42.857 9.90 9.90 0.00 4.06
1849 4036 2.698855 AACGTTAGAGATGGCATGCT 57.301 45.000 18.92 4.58 0.00 3.79
1850 4037 2.698855 ACGTTAGAGATGGCATGCTT 57.301 45.000 18.92 5.43 0.00 3.91
1851 4038 3.819564 ACGTTAGAGATGGCATGCTTA 57.180 42.857 18.92 7.69 0.00 3.09
1852 4039 4.137116 ACGTTAGAGATGGCATGCTTAA 57.863 40.909 18.92 4.07 0.00 1.85
1853 4040 4.513442 ACGTTAGAGATGGCATGCTTAAA 58.487 39.130 18.92 1.32 0.00 1.52
1854 4041 4.941263 ACGTTAGAGATGGCATGCTTAAAA 59.059 37.500 18.92 0.70 0.00 1.52
1855 4042 5.590259 ACGTTAGAGATGGCATGCTTAAAAT 59.410 36.000 18.92 3.96 0.00 1.82
1856 4043 6.138761 CGTTAGAGATGGCATGCTTAAAATC 58.861 40.000 18.92 12.53 0.00 2.17
1857 4044 6.017605 CGTTAGAGATGGCATGCTTAAAATCT 60.018 38.462 18.92 16.61 0.00 2.40
1858 4045 5.769484 AGAGATGGCATGCTTAAAATCTG 57.231 39.130 18.92 0.00 0.00 2.90
1859 4046 5.443283 AGAGATGGCATGCTTAAAATCTGA 58.557 37.500 18.92 0.00 0.00 3.27
1860 4047 5.889853 AGAGATGGCATGCTTAAAATCTGAA 59.110 36.000 18.92 0.00 0.00 3.02
1861 4048 5.899299 AGATGGCATGCTTAAAATCTGAAC 58.101 37.500 18.92 0.00 0.00 3.18
1862 4049 4.095410 TGGCATGCTTAAAATCTGAACG 57.905 40.909 18.92 0.00 0.00 3.95
1863 4050 3.505680 TGGCATGCTTAAAATCTGAACGT 59.494 39.130 18.92 0.00 0.00 3.99
1864 4051 4.022416 TGGCATGCTTAAAATCTGAACGTT 60.022 37.500 18.92 0.00 0.00 3.99
1865 4052 4.923281 GGCATGCTTAAAATCTGAACGTTT 59.077 37.500 18.92 0.00 0.00 3.60
1866 4053 5.164061 GGCATGCTTAAAATCTGAACGTTTG 60.164 40.000 18.92 0.00 0.00 2.93
1867 4054 5.629020 GCATGCTTAAAATCTGAACGTTTGA 59.371 36.000 11.37 4.75 0.00 2.69
1868 4055 6.183359 GCATGCTTAAAATCTGAACGTTTGAG 60.183 38.462 11.37 1.79 0.00 3.02
1869 4056 6.612247 TGCTTAAAATCTGAACGTTTGAGA 57.388 33.333 0.46 7.85 0.00 3.27
1870 4057 7.202016 TGCTTAAAATCTGAACGTTTGAGAT 57.798 32.000 14.77 14.77 0.00 2.75
1871 4058 7.648142 TGCTTAAAATCTGAACGTTTGAGATT 58.352 30.769 21.82 21.82 37.92 2.40
1872 4059 8.134895 TGCTTAAAATCTGAACGTTTGAGATTT 58.865 29.630 27.33 27.33 44.56 2.17
1873 4060 9.607285 GCTTAAAATCTGAACGTTTGAGATTTA 57.393 29.630 30.14 21.67 42.79 1.40
1875 4062 9.887406 TTAAAATCTGAACGTTTGAGATTTACC 57.113 29.630 30.14 8.76 42.79 2.85
1876 4063 5.779806 ATCTGAACGTTTGAGATTTACCG 57.220 39.130 14.77 0.00 0.00 4.02
1877 4064 3.991773 TCTGAACGTTTGAGATTTACCGG 59.008 43.478 0.46 0.00 0.00 5.28
1878 4065 3.068560 TGAACGTTTGAGATTTACCGGG 58.931 45.455 6.32 0.00 0.00 5.73
1879 4066 2.103537 ACGTTTGAGATTTACCGGGG 57.896 50.000 6.32 0.00 0.00 5.73
1880 4067 1.348696 ACGTTTGAGATTTACCGGGGT 59.651 47.619 6.32 0.00 0.00 4.95
1881 4068 2.004733 CGTTTGAGATTTACCGGGGTC 58.995 52.381 6.32 0.00 0.00 4.46
1882 4069 2.354403 CGTTTGAGATTTACCGGGGTCT 60.354 50.000 6.32 2.81 0.00 3.85
1883 4070 3.682696 GTTTGAGATTTACCGGGGTCTT 58.317 45.455 6.32 0.00 0.00 3.01
1884 4071 4.077108 GTTTGAGATTTACCGGGGTCTTT 58.923 43.478 6.32 0.00 0.00 2.52
1885 4072 4.376225 TTGAGATTTACCGGGGTCTTTT 57.624 40.909 6.32 0.00 0.00 2.27
1886 4073 4.376225 TGAGATTTACCGGGGTCTTTTT 57.624 40.909 6.32 0.00 0.00 1.94
1911 4101 7.730364 TTATGTCCACTTTCTTTCAGAGAAC 57.270 36.000 0.00 0.00 43.90 3.01
1914 4104 5.760253 TGTCCACTTTCTTTCAGAGAACATC 59.240 40.000 0.00 0.00 43.90 3.06
1917 4107 4.212004 CACTTTCTTTCAGAGAACATCGCA 59.788 41.667 0.00 0.00 43.90 5.10
1922 4112 4.996758 TCTTTCAGAGAACATCGCATTTCA 59.003 37.500 0.00 0.00 0.00 2.69
1998 4217 8.948631 ACTCAAATGATCATACACGAAATACT 57.051 30.769 9.04 0.00 0.00 2.12
2035 4258 1.335506 CCGACCACAAAATTTGACCCG 60.336 52.381 13.19 9.48 0.00 5.28
2036 4259 1.335496 CGACCACAAAATTTGACCCGT 59.665 47.619 13.19 2.51 0.00 5.28
2037 4260 2.738135 GACCACAAAATTTGACCCGTG 58.262 47.619 13.19 0.00 0.00 4.94
2038 4261 1.202475 ACCACAAAATTTGACCCGTGC 60.202 47.619 13.19 0.00 0.00 5.34
2039 4262 1.496934 CACAAAATTTGACCCGTGCC 58.503 50.000 13.19 0.00 0.00 5.01
2040 4263 0.031449 ACAAAATTTGACCCGTGCCG 59.969 50.000 13.19 0.00 0.00 5.69
2068 4291 2.983592 GGGCCGGTTGTTGGTCTG 60.984 66.667 1.90 0.00 0.00 3.51
2069 4292 2.983592 GGCCGGTTGTTGGTCTGG 60.984 66.667 1.90 0.00 0.00 3.86
2071 4294 2.258726 GCCGGTTGTTGGTCTGGTC 61.259 63.158 1.90 0.00 33.07 4.02
2075 4298 1.270839 CGGTTGTTGGTCTGGTCTCAT 60.271 52.381 0.00 0.00 0.00 2.90
2076 4299 2.028476 CGGTTGTTGGTCTGGTCTCATA 60.028 50.000 0.00 0.00 0.00 2.15
2077 4300 3.369471 CGGTTGTTGGTCTGGTCTCATAT 60.369 47.826 0.00 0.00 0.00 1.78
2078 4301 4.142026 CGGTTGTTGGTCTGGTCTCATATA 60.142 45.833 0.00 0.00 0.00 0.86
2079 4302 5.453339 CGGTTGTTGGTCTGGTCTCATATAT 60.453 44.000 0.00 0.00 0.00 0.86
2080 4303 5.760253 GGTTGTTGGTCTGGTCTCATATATG 59.240 44.000 6.36 6.36 0.00 1.78
2110 4333 4.092091 CGAGACTGCTGACCAATTAAACTC 59.908 45.833 0.00 0.00 0.00 3.01
2122 4345 1.710013 TTAAACTCGAGCTGCCGAAG 58.290 50.000 13.61 9.93 38.17 3.79
2139 4362 2.034558 CGAAGCTGGTGTGGTCAAATTT 59.965 45.455 0.00 0.00 0.00 1.82
2140 4363 3.490761 CGAAGCTGGTGTGGTCAAATTTT 60.491 43.478 0.00 0.00 0.00 1.82
2141 4364 3.457610 AGCTGGTGTGGTCAAATTTTG 57.542 42.857 2.59 2.59 0.00 2.44
2142 4365 2.765699 AGCTGGTGTGGTCAAATTTTGT 59.234 40.909 8.89 0.00 0.00 2.83
2143 4366 2.865551 GCTGGTGTGGTCAAATTTTGTG 59.134 45.455 8.89 0.00 0.00 3.33
2144 4367 3.456280 CTGGTGTGGTCAAATTTTGTGG 58.544 45.455 8.89 0.00 0.00 4.17
2145 4368 2.834549 TGGTGTGGTCAAATTTTGTGGT 59.165 40.909 8.89 0.00 0.00 4.16
2146 4369 3.118956 TGGTGTGGTCAAATTTTGTGGTC 60.119 43.478 8.89 1.08 0.00 4.02
2147 4370 3.453424 GTGTGGTCAAATTTTGTGGTCC 58.547 45.455 8.89 8.19 0.00 4.46
2149 4372 2.359531 GTGGTCAAATTTTGTGGTCCGA 59.640 45.455 8.89 0.00 0.00 4.55
2150 4373 3.024547 TGGTCAAATTTTGTGGTCCGAA 58.975 40.909 8.89 0.00 0.00 4.30
2163 4398 1.077644 TCCGAACGGGAGAGGAGAG 60.078 63.158 13.29 0.00 40.94 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 3.507233 AGATTGTTCATGTTGGCGACATT 59.493 39.130 17.77 2.33 46.80 2.71
139 148 5.934625 AGTATTTCTTGACCAAGTAGCAGTG 59.065 40.000 9.31 0.00 39.38 3.66
150 159 3.858247 ACGGCTACAGTATTTCTTGACC 58.142 45.455 0.00 0.00 0.00 4.02
166 175 2.365582 GATACATTTGGTCCAACGGCT 58.634 47.619 2.98 0.00 0.00 5.52
171 182 5.984725 AGATACACGATACATTTGGTCCAA 58.015 37.500 0.00 0.00 0.00 3.53
192 203 9.392259 TGACTCGAACTCTATAAGACATTAAGA 57.608 33.333 0.00 0.00 0.00 2.10
193 204 9.658475 CTGACTCGAACTCTATAAGACATTAAG 57.342 37.037 0.00 0.00 0.00 1.85
194 205 9.392259 TCTGACTCGAACTCTATAAGACATTAA 57.608 33.333 0.00 0.00 0.00 1.40
195 206 8.959705 TCTGACTCGAACTCTATAAGACATTA 57.040 34.615 0.00 0.00 0.00 1.90
196 207 7.867305 TCTGACTCGAACTCTATAAGACATT 57.133 36.000 0.00 0.00 0.00 2.71
197 208 7.867305 TTCTGACTCGAACTCTATAAGACAT 57.133 36.000 0.00 0.00 0.00 3.06
198 209 7.148222 CCTTTCTGACTCGAACTCTATAAGACA 60.148 40.741 0.00 0.00 0.00 3.41
199 210 7.066043 TCCTTTCTGACTCGAACTCTATAAGAC 59.934 40.741 0.00 0.00 0.00 3.01
200 211 7.110810 TCCTTTCTGACTCGAACTCTATAAGA 58.889 38.462 0.00 0.00 0.00 2.10
201 212 7.323049 TCCTTTCTGACTCGAACTCTATAAG 57.677 40.000 0.00 0.00 0.00 1.73
240 251 9.113838 CAGTCAAACCTAATATGCAGAGTAAAT 57.886 33.333 0.00 0.00 0.00 1.40
241 252 8.318412 TCAGTCAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
242 253 7.847096 TCAGTCAAACCTAATATGCAGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
243 254 7.418337 TCAGTCAAACCTAATATGCAGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
244 255 6.299805 TCAGTCAAACCTAATATGCAGAGT 57.700 37.500 0.00 0.00 0.00 3.24
245 256 6.820656 ACTTCAGTCAAACCTAATATGCAGAG 59.179 38.462 0.00 0.00 0.00 3.35
246 257 6.711277 ACTTCAGTCAAACCTAATATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
247 258 6.992063 ACTTCAGTCAAACCTAATATGCAG 57.008 37.500 0.00 0.00 0.00 4.41
248 259 6.985188 GACTTCAGTCAAACCTAATATGCA 57.015 37.500 1.86 0.00 44.18 3.96
308 319 9.315363 TGGATTTGTTAGGGTAAATGTTTGTAT 57.685 29.630 0.00 0.00 0.00 2.29
309 320 8.707796 TGGATTTGTTAGGGTAAATGTTTGTA 57.292 30.769 0.00 0.00 0.00 2.41
310 321 7.604657 TGGATTTGTTAGGGTAAATGTTTGT 57.395 32.000 0.00 0.00 0.00 2.83
313 324 9.707957 TCATATGGATTTGTTAGGGTAAATGTT 57.292 29.630 2.13 0.00 0.00 2.71
314 325 9.131791 GTCATATGGATTTGTTAGGGTAAATGT 57.868 33.333 2.13 0.00 0.00 2.71
315 326 8.289618 CGTCATATGGATTTGTTAGGGTAAATG 58.710 37.037 2.13 0.00 0.00 2.32
316 327 7.996644 ACGTCATATGGATTTGTTAGGGTAAAT 59.003 33.333 2.13 0.00 0.00 1.40
317 328 7.281324 CACGTCATATGGATTTGTTAGGGTAAA 59.719 37.037 2.13 0.00 0.00 2.01
318 329 6.764085 CACGTCATATGGATTTGTTAGGGTAA 59.236 38.462 2.13 0.00 0.00 2.85
319 330 6.098552 TCACGTCATATGGATTTGTTAGGGTA 59.901 38.462 2.13 0.00 0.00 3.69
320 331 5.104693 TCACGTCATATGGATTTGTTAGGGT 60.105 40.000 2.13 0.00 0.00 4.34
321 332 5.364778 TCACGTCATATGGATTTGTTAGGG 58.635 41.667 2.13 0.00 0.00 3.53
322 333 6.918892 TTCACGTCATATGGATTTGTTAGG 57.081 37.500 2.13 0.00 0.00 2.69
323 334 7.974675 ACTTTCACGTCATATGGATTTGTTAG 58.025 34.615 2.13 0.00 0.00 2.34
324 335 7.915293 ACTTTCACGTCATATGGATTTGTTA 57.085 32.000 2.13 0.00 0.00 2.41
325 336 6.817765 ACTTTCACGTCATATGGATTTGTT 57.182 33.333 2.13 0.00 0.00 2.83
326 337 6.876789 TGTACTTTCACGTCATATGGATTTGT 59.123 34.615 2.13 0.00 0.00 2.83
327 338 7.302350 TGTACTTTCACGTCATATGGATTTG 57.698 36.000 2.13 0.00 0.00 2.32
328 339 8.506168 AATGTACTTTCACGTCATATGGATTT 57.494 30.769 2.13 0.00 0.00 2.17
329 340 7.768582 TGAATGTACTTTCACGTCATATGGATT 59.231 33.333 17.62 0.00 30.82 3.01
330 341 7.272244 TGAATGTACTTTCACGTCATATGGAT 58.728 34.615 17.62 0.00 30.82 3.41
331 342 6.635755 TGAATGTACTTTCACGTCATATGGA 58.364 36.000 17.62 0.00 30.82 3.41
332 343 6.902224 TGAATGTACTTTCACGTCATATGG 57.098 37.500 17.62 0.00 30.82 2.74
336 347 9.161629 TCATTATTGAATGTACTTTCACGTCAT 57.838 29.630 20.40 14.54 42.71 3.06
337 348 8.541133 TCATTATTGAATGTACTTTCACGTCA 57.459 30.769 20.40 9.22 42.71 4.35
415 426 6.931840 AGGTCAAACTTTGTAAACTTTGCAAA 59.068 30.769 12.14 12.14 41.79 3.68
416 427 6.459923 AGGTCAAACTTTGTAAACTTTGCAA 58.540 32.000 0.00 0.00 33.37 4.08
417 428 6.031751 AGGTCAAACTTTGTAAACTTTGCA 57.968 33.333 1.44 0.00 0.00 4.08
418 429 6.588373 TCAAGGTCAAACTTTGTAAACTTTGC 59.412 34.615 9.85 0.00 36.66 3.68
419 430 7.201435 GCTCAAGGTCAAACTTTGTAAACTTTG 60.201 37.037 8.97 8.97 36.66 2.77
420 431 6.811665 GCTCAAGGTCAAACTTTGTAAACTTT 59.188 34.615 1.44 0.00 36.66 2.66
421 432 6.071616 TGCTCAAGGTCAAACTTTGTAAACTT 60.072 34.615 1.44 0.00 36.66 2.66
422 433 5.417580 TGCTCAAGGTCAAACTTTGTAAACT 59.582 36.000 1.44 0.00 36.66 2.66
423 434 5.646606 TGCTCAAGGTCAAACTTTGTAAAC 58.353 37.500 1.44 0.00 36.66 2.01
424 435 5.906113 TGCTCAAGGTCAAACTTTGTAAA 57.094 34.783 1.44 0.00 36.66 2.01
425 436 5.906113 TTGCTCAAGGTCAAACTTTGTAA 57.094 34.783 1.44 0.00 36.66 2.41
426 437 5.678616 GCTTTGCTCAAGGTCAAACTTTGTA 60.679 40.000 1.44 0.00 36.66 2.41
427 438 4.747810 CTTTGCTCAAGGTCAAACTTTGT 58.252 39.130 1.44 0.00 36.66 2.83
428 439 3.553105 GCTTTGCTCAAGGTCAAACTTTG 59.447 43.478 0.00 0.00 36.63 2.77
429 440 3.448660 AGCTTTGCTCAAGGTCAAACTTT 59.551 39.130 0.00 0.00 39.06 2.66
430 441 3.026694 AGCTTTGCTCAAGGTCAAACTT 58.973 40.909 0.00 0.00 39.06 2.66
431 442 2.659428 AGCTTTGCTCAAGGTCAAACT 58.341 42.857 0.00 0.00 39.06 2.66
432 443 4.568152 TTAGCTTTGCTCAAGGTCAAAC 57.432 40.909 0.00 0.00 42.50 2.93
433 444 5.106712 CGTATTAGCTTTGCTCAAGGTCAAA 60.107 40.000 0.00 0.00 42.50 2.69
434 445 4.391830 CGTATTAGCTTTGCTCAAGGTCAA 59.608 41.667 0.00 0.70 42.50 3.18
435 446 3.932710 CGTATTAGCTTTGCTCAAGGTCA 59.067 43.478 0.00 0.00 42.50 4.02
436 447 3.933332 ACGTATTAGCTTTGCTCAAGGTC 59.067 43.478 0.00 0.00 42.50 3.85
437 448 3.684788 CACGTATTAGCTTTGCTCAAGGT 59.315 43.478 0.00 6.24 45.51 3.50
438 449 3.063997 CCACGTATTAGCTTTGCTCAAGG 59.936 47.826 0.00 0.00 40.44 3.61
439 450 3.932710 TCCACGTATTAGCTTTGCTCAAG 59.067 43.478 0.00 0.00 40.44 3.02
440 451 3.932822 TCCACGTATTAGCTTTGCTCAA 58.067 40.909 0.00 0.00 40.44 3.02
441 452 3.603158 TCCACGTATTAGCTTTGCTCA 57.397 42.857 0.00 0.00 40.44 4.26
442 453 6.598753 TTAATCCACGTATTAGCTTTGCTC 57.401 37.500 0.00 0.00 40.44 4.26
443 454 6.995511 TTTAATCCACGTATTAGCTTTGCT 57.004 33.333 0.00 0.00 43.41 3.91
444 455 9.724839 TTTATTTAATCCACGTATTAGCTTTGC 57.275 29.630 0.00 0.00 0.00 3.68
472 483 8.210265 CCAACATATATTGCCCCTGTTTTTATT 58.790 33.333 0.00 0.00 0.00 1.40
473 484 7.346960 ACCAACATATATTGCCCCTGTTTTTAT 59.653 33.333 0.00 0.00 0.00 1.40
474 485 6.670027 ACCAACATATATTGCCCCTGTTTTTA 59.330 34.615 0.00 0.00 0.00 1.52
475 486 5.487131 ACCAACATATATTGCCCCTGTTTTT 59.513 36.000 0.00 0.00 0.00 1.94
476 487 5.029474 ACCAACATATATTGCCCCTGTTTT 58.971 37.500 0.00 0.00 0.00 2.43
477 488 4.619679 ACCAACATATATTGCCCCTGTTT 58.380 39.130 0.00 0.00 0.00 2.83
478 489 4.264373 ACCAACATATATTGCCCCTGTT 57.736 40.909 0.00 0.00 0.00 3.16
479 490 3.971468 ACCAACATATATTGCCCCTGT 57.029 42.857 0.00 0.00 0.00 4.00
480 491 3.758554 GCTACCAACATATATTGCCCCTG 59.241 47.826 0.00 0.00 0.00 4.45
481 492 3.657727 AGCTACCAACATATATTGCCCCT 59.342 43.478 0.00 0.00 0.00 4.79
482 493 4.034285 AGCTACCAACATATATTGCCCC 57.966 45.455 0.00 0.00 0.00 5.80
483 494 6.404734 GCAATAGCTACCAACATATATTGCCC 60.405 42.308 13.93 0.00 44.77 5.36
484 495 6.555315 GCAATAGCTACCAACATATATTGCC 58.445 40.000 13.93 1.01 44.77 4.52
486 497 7.686438 TGGCAATAGCTACCAACATATATTG 57.314 36.000 0.00 0.00 41.70 1.90
487 498 7.340232 CCATGGCAATAGCTACCAACATATATT 59.660 37.037 0.00 0.00 41.70 1.28
488 499 6.830324 CCATGGCAATAGCTACCAACATATAT 59.170 38.462 0.00 0.00 41.70 0.86
492 503 3.225104 CCATGGCAATAGCTACCAACAT 58.775 45.455 0.00 2.03 41.70 2.71
513 524 8.294577 CAGTTAGTTACTTAATTCAACCCAACC 58.705 37.037 0.00 0.00 33.85 3.77
514 525 9.059260 TCAGTTAGTTACTTAATTCAACCCAAC 57.941 33.333 0.00 0.00 33.85 3.77
516 527 9.226606 CATCAGTTAGTTACTTAATTCAACCCA 57.773 33.333 0.00 0.00 33.85 4.51
524 535 9.654663 GGACAAGACATCAGTTAGTTACTTAAT 57.345 33.333 0.00 0.00 33.85 1.40
525 536 8.644216 TGGACAAGACATCAGTTAGTTACTTAA 58.356 33.333 0.00 0.00 33.85 1.85
526 537 8.185506 TGGACAAGACATCAGTTAGTTACTTA 57.814 34.615 0.00 0.00 33.85 2.24
527 538 7.062749 TGGACAAGACATCAGTTAGTTACTT 57.937 36.000 0.00 0.00 33.85 2.24
528 539 6.665992 TGGACAAGACATCAGTTAGTTACT 57.334 37.500 0.00 0.00 37.68 2.24
529 540 6.313905 CCATGGACAAGACATCAGTTAGTTAC 59.686 42.308 5.56 0.00 0.00 2.50
530 541 6.406370 CCATGGACAAGACATCAGTTAGTTA 58.594 40.000 5.56 0.00 0.00 2.24
534 545 3.843619 TCCCATGGACAAGACATCAGTTA 59.156 43.478 15.22 0.00 0.00 2.24
554 565 3.660865 ACACTGTACGGTCAATCTTTCC 58.339 45.455 3.76 0.00 0.00 3.13
634 646 1.130749 CGACACAGACCTTAGAGACGG 59.869 57.143 0.00 0.00 0.00 4.79
637 649 2.074576 CGTCGACACAGACCTTAGAGA 58.925 52.381 17.16 0.00 37.85 3.10
638 650 1.130749 CCGTCGACACAGACCTTAGAG 59.869 57.143 17.16 0.00 37.85 2.43
639 651 1.162698 CCGTCGACACAGACCTTAGA 58.837 55.000 17.16 0.00 37.85 2.10
640 652 0.170561 CCCGTCGACACAGACCTTAG 59.829 60.000 17.16 0.00 37.85 2.18
641 653 0.538057 ACCCGTCGACACAGACCTTA 60.538 55.000 17.16 0.00 37.85 2.69
642 654 1.803366 GACCCGTCGACACAGACCTT 61.803 60.000 17.16 0.00 37.85 3.50
649 661 1.666872 CCCTTTGACCCGTCGACAC 60.667 63.158 17.16 4.35 0.00 3.67
650 662 2.738480 CCCTTTGACCCGTCGACA 59.262 61.111 17.16 0.00 0.00 4.35
656 668 4.338710 TTCCGGCCCTTTGACCCG 62.339 66.667 0.00 0.00 41.60 5.28
657 669 2.675423 GTTCCGGCCCTTTGACCC 60.675 66.667 0.00 0.00 0.00 4.46
798 818 4.708576 ATATAGAGGTGAGACCGTGAGA 57.291 45.455 0.00 0.00 44.90 3.27
799 819 6.879276 TTTATATAGAGGTGAGACCGTGAG 57.121 41.667 0.00 0.00 44.90 3.51
800 820 6.148976 CGATTTATATAGAGGTGAGACCGTGA 59.851 42.308 0.00 0.00 44.90 4.35
801 821 6.148976 TCGATTTATATAGAGGTGAGACCGTG 59.851 42.308 0.00 0.00 44.90 4.94
802 822 6.236409 TCGATTTATATAGAGGTGAGACCGT 58.764 40.000 0.00 0.00 44.90 4.83
803 823 6.594547 TCTCGATTTATATAGAGGTGAGACCG 59.405 42.308 4.05 0.00 44.90 4.79
804 824 7.390996 TGTCTCGATTTATATAGAGGTGAGACC 59.609 40.741 19.03 0.00 45.61 3.85
805 825 8.231837 GTGTCTCGATTTATATAGAGGTGAGAC 58.768 40.741 16.98 16.98 46.10 3.36
823 843 2.076100 GATTTGCATGGTGTGTCTCGA 58.924 47.619 0.00 0.00 0.00 4.04
830 851 1.714541 TGGGTTGATTTGCATGGTGT 58.285 45.000 0.00 0.00 0.00 4.16
894 1107 1.738099 CAGGTTCCGAGGTTCAGCG 60.738 63.158 0.00 0.00 0.00 5.18
989 1217 2.395360 GCCGCCATCGCTGTTGTTA 61.395 57.895 0.00 0.00 0.00 2.41
1115 1349 4.969196 CCATCCCGATGCCGTCCG 62.969 72.222 0.00 0.00 37.49 4.79
1144 1378 3.137484 CTGATTTCAGGTCGCCGAA 57.863 52.632 0.00 0.00 40.20 4.30
1414 1685 5.904362 AACATTTAAGGCCAGAGACAATC 57.096 39.130 5.01 0.00 0.00 2.67
1426 1697 8.795786 TTTGAAATCAGTCGAAACATTTAAGG 57.204 30.769 0.00 0.00 0.00 2.69
1442 1713 4.448395 CGCAAAAGCCATTCTTTGAAATCA 59.552 37.500 0.00 0.00 43.84 2.57
1504 2659 9.139174 CATTTCCGTAAATAAAATGCAAAGAGT 57.861 29.630 0.00 0.00 34.65 3.24
1523 2679 2.031191 CGAACGGGGTTTATCATTTCCG 59.969 50.000 0.00 0.00 42.69 4.30
1524 2680 2.356695 CCGAACGGGGTTTATCATTTCC 59.643 50.000 5.25 0.00 0.00 3.13
1525 2681 3.272581 TCCGAACGGGGTTTATCATTTC 58.727 45.455 13.29 0.00 36.01 2.17
1526 2682 3.353370 TCCGAACGGGGTTTATCATTT 57.647 42.857 13.29 0.00 36.01 2.32
1527 2683 3.570912 ATCCGAACGGGGTTTATCATT 57.429 42.857 13.29 0.00 36.01 2.57
1528 2684 3.570912 AATCCGAACGGGGTTTATCAT 57.429 42.857 13.29 0.00 34.63 2.45
1534 2690 1.814394 GCTTAAAATCCGAACGGGGTT 59.186 47.619 13.29 6.25 42.51 4.11
1535 2691 1.271488 TGCTTAAAATCCGAACGGGGT 60.271 47.619 13.29 0.16 36.01 4.95
1536 2692 1.455248 TGCTTAAAATCCGAACGGGG 58.545 50.000 13.29 0.00 36.01 5.73
1537 2693 2.680841 TCATGCTTAAAATCCGAACGGG 59.319 45.455 13.29 0.00 35.59 5.28
1538 2694 3.126171 TGTCATGCTTAAAATCCGAACGG 59.874 43.478 6.94 6.94 0.00 4.44
1539 2695 4.335082 TGTCATGCTTAAAATCCGAACG 57.665 40.909 0.00 0.00 0.00 3.95
1540 2696 4.857037 GGTTGTCATGCTTAAAATCCGAAC 59.143 41.667 0.00 0.00 0.00 3.95
1541 2697 4.082463 GGGTTGTCATGCTTAAAATCCGAA 60.082 41.667 0.00 0.00 0.00 4.30
1542 2698 3.442273 GGGTTGTCATGCTTAAAATCCGA 59.558 43.478 0.00 0.00 0.00 4.55
1543 2699 3.730662 CGGGTTGTCATGCTTAAAATCCG 60.731 47.826 0.00 0.00 0.00 4.18
1544 2700 3.442273 TCGGGTTGTCATGCTTAAAATCC 59.558 43.478 0.00 0.00 0.00 3.01
1545 2701 4.695217 TCGGGTTGTCATGCTTAAAATC 57.305 40.909 0.00 0.00 0.00 2.17
1546 2702 4.279671 TGTTCGGGTTGTCATGCTTAAAAT 59.720 37.500 0.00 0.00 0.00 1.82
1547 2703 3.632604 TGTTCGGGTTGTCATGCTTAAAA 59.367 39.130 0.00 0.00 0.00 1.52
1548 2704 3.215151 TGTTCGGGTTGTCATGCTTAAA 58.785 40.909 0.00 0.00 0.00 1.52
1549 2705 2.852449 TGTTCGGGTTGTCATGCTTAA 58.148 42.857 0.00 0.00 0.00 1.85
1550 2706 2.552599 TGTTCGGGTTGTCATGCTTA 57.447 45.000 0.00 0.00 0.00 3.09
1551 2707 1.909700 ATGTTCGGGTTGTCATGCTT 58.090 45.000 0.00 0.00 0.00 3.91
1552 2708 1.909700 AATGTTCGGGTTGTCATGCT 58.090 45.000 0.00 0.00 0.00 3.79
1553 2709 2.228822 AGAAATGTTCGGGTTGTCATGC 59.771 45.455 0.00 0.00 34.02 4.06
1554 2710 3.501828 TGAGAAATGTTCGGGTTGTCATG 59.498 43.478 0.00 0.00 34.02 3.07
1555 2711 3.750371 TGAGAAATGTTCGGGTTGTCAT 58.250 40.909 0.00 0.00 34.02 3.06
1556 2712 3.201353 TGAGAAATGTTCGGGTTGTCA 57.799 42.857 0.00 0.00 34.02 3.58
1557 2713 4.935808 AGTATGAGAAATGTTCGGGTTGTC 59.064 41.667 0.00 0.00 34.02 3.18
1558 2714 4.906618 AGTATGAGAAATGTTCGGGTTGT 58.093 39.130 0.00 0.00 34.02 3.32
1559 2715 6.594159 AGTTAGTATGAGAAATGTTCGGGTTG 59.406 38.462 0.00 0.00 34.02 3.77
1560 2716 6.708285 AGTTAGTATGAGAAATGTTCGGGTT 58.292 36.000 0.00 0.00 34.02 4.11
1561 2717 6.295719 AGTTAGTATGAGAAATGTTCGGGT 57.704 37.500 0.00 0.00 34.02 5.28
1562 2718 7.611213 AAAGTTAGTATGAGAAATGTTCGGG 57.389 36.000 0.00 0.00 34.02 5.14
1563 2719 9.367444 ACTAAAGTTAGTATGAGAAATGTTCGG 57.633 33.333 1.81 0.00 41.92 4.30
1569 2725 8.870879 GCGTGAACTAAAGTTAGTATGAGAAAT 58.129 33.333 4.20 0.00 42.86 2.17
1570 2726 7.868922 TGCGTGAACTAAAGTTAGTATGAGAAA 59.131 33.333 4.20 0.00 42.86 2.52
1571 2727 7.372714 TGCGTGAACTAAAGTTAGTATGAGAA 58.627 34.615 4.20 0.00 42.86 2.87
1572 2728 6.916440 TGCGTGAACTAAAGTTAGTATGAGA 58.084 36.000 4.20 0.00 42.86 3.27
1573 2729 7.541091 TCTTGCGTGAACTAAAGTTAGTATGAG 59.459 37.037 4.20 0.00 42.86 2.90
1574 2730 7.372714 TCTTGCGTGAACTAAAGTTAGTATGA 58.627 34.615 4.20 0.00 42.86 2.15
1575 2731 7.576750 TCTTGCGTGAACTAAAGTTAGTATG 57.423 36.000 4.20 0.00 42.86 2.39
1576 2732 8.656849 CAATCTTGCGTGAACTAAAGTTAGTAT 58.343 33.333 4.20 0.00 42.86 2.12
1577 2733 7.117236 CCAATCTTGCGTGAACTAAAGTTAGTA 59.883 37.037 4.20 0.00 42.86 1.82
1578 2734 6.073222 CCAATCTTGCGTGAACTAAAGTTAGT 60.073 38.462 0.00 0.00 45.43 2.24
1579 2735 6.307155 CCAATCTTGCGTGAACTAAAGTTAG 58.693 40.000 0.00 0.00 38.56 2.34
1580 2736 5.334569 GCCAATCTTGCGTGAACTAAAGTTA 60.335 40.000 0.00 0.00 38.56 2.24
1581 2737 4.556699 GCCAATCTTGCGTGAACTAAAGTT 60.557 41.667 0.00 0.00 41.64 2.66
1582 2738 3.058224 GCCAATCTTGCGTGAACTAAAGT 60.058 43.478 0.00 0.00 0.00 2.66
1583 2739 3.058293 TGCCAATCTTGCGTGAACTAAAG 60.058 43.478 0.00 0.00 0.00 1.85
1584 2740 2.881513 TGCCAATCTTGCGTGAACTAAA 59.118 40.909 0.00 0.00 0.00 1.85
1585 2741 2.499197 TGCCAATCTTGCGTGAACTAA 58.501 42.857 0.00 0.00 0.00 2.24
1586 2742 2.177394 TGCCAATCTTGCGTGAACTA 57.823 45.000 0.00 0.00 0.00 2.24
1587 2743 1.317613 TTGCCAATCTTGCGTGAACT 58.682 45.000 0.00 0.00 0.00 3.01
1588 2744 1.786579 GTTTGCCAATCTTGCGTGAAC 59.213 47.619 0.00 0.00 0.00 3.18
1589 2745 1.406898 TGTTTGCCAATCTTGCGTGAA 59.593 42.857 0.00 0.00 0.00 3.18
1590 2746 1.028130 TGTTTGCCAATCTTGCGTGA 58.972 45.000 0.00 0.00 0.00 4.35
1591 2747 1.722464 CATGTTTGCCAATCTTGCGTG 59.278 47.619 0.00 0.00 0.00 5.34
1592 2748 1.612950 TCATGTTTGCCAATCTTGCGT 59.387 42.857 0.00 0.00 0.00 5.24
1593 2749 2.350899 TCATGTTTGCCAATCTTGCG 57.649 45.000 0.00 0.00 0.00 4.85
1594 2750 6.913873 AATTATCATGTTTGCCAATCTTGC 57.086 33.333 0.00 0.00 0.00 4.01
1595 2751 9.158233 AGAAAATTATCATGTTTGCCAATCTTG 57.842 29.630 0.00 0.00 0.00 3.02
1596 2752 9.158233 CAGAAAATTATCATGTTTGCCAATCTT 57.842 29.630 0.00 0.00 0.00 2.40
1597 2753 8.533657 TCAGAAAATTATCATGTTTGCCAATCT 58.466 29.630 0.00 0.00 0.00 2.40
1598 2754 8.598075 GTCAGAAAATTATCATGTTTGCCAATC 58.402 33.333 0.00 0.00 0.00 2.67
1599 2755 8.095792 TGTCAGAAAATTATCATGTTTGCCAAT 58.904 29.630 0.00 0.00 0.00 3.16
1600 2756 7.440198 TGTCAGAAAATTATCATGTTTGCCAA 58.560 30.769 0.00 0.00 0.00 4.52
1601 2757 6.990798 TGTCAGAAAATTATCATGTTTGCCA 58.009 32.000 0.00 0.00 0.00 4.92
1602 2758 7.887996 TTGTCAGAAAATTATCATGTTTGCC 57.112 32.000 0.00 0.00 0.00 4.52
1626 2782 4.526650 ACAACTTTGTCCCAGTCTGTTTTT 59.473 37.500 0.00 0.00 36.50 1.94
1627 2783 4.086457 ACAACTTTGTCCCAGTCTGTTTT 58.914 39.130 0.00 0.00 36.50 2.43
1628 2784 3.697166 ACAACTTTGTCCCAGTCTGTTT 58.303 40.909 0.00 0.00 36.50 2.83
1629 2785 3.366052 ACAACTTTGTCCCAGTCTGTT 57.634 42.857 0.00 0.00 36.50 3.16
1688 2844 1.740296 GGGTGAGTGTATGCGCGTT 60.740 57.895 7.78 0.00 0.00 4.84
1719 3904 2.315459 TCATAGGGGTAGGGTGTGTGTA 59.685 50.000 0.00 0.00 0.00 2.90
1747 3934 2.969628 ATACTGGCTCAGTCTTTCGG 57.030 50.000 10.60 0.00 41.21 4.30
1767 3954 8.331022 CGATGACTTCGTAAATTTCAAGATGAT 58.669 33.333 0.00 0.00 43.01 2.45
1797 3984 0.535553 TTTAGTTGACGTGGGGGTGC 60.536 55.000 0.00 0.00 0.00 5.01
1827 4014 3.758554 AGCATGCCATCTCTAACGTTTTT 59.241 39.130 15.66 0.00 0.00 1.94
1828 4015 3.347216 AGCATGCCATCTCTAACGTTTT 58.653 40.909 15.66 0.00 0.00 2.43
1829 4016 2.991250 AGCATGCCATCTCTAACGTTT 58.009 42.857 15.66 0.00 0.00 3.60
1830 4017 2.698855 AGCATGCCATCTCTAACGTT 57.301 45.000 15.66 5.88 0.00 3.99
1831 4018 2.698855 AAGCATGCCATCTCTAACGT 57.301 45.000 15.66 0.00 0.00 3.99
1832 4019 5.484173 TTTTAAGCATGCCATCTCTAACG 57.516 39.130 15.66 0.00 0.00 3.18
1833 4020 7.012704 TCAGATTTTAAGCATGCCATCTCTAAC 59.987 37.037 15.66 0.00 0.00 2.34
1834 4021 7.056006 TCAGATTTTAAGCATGCCATCTCTAA 58.944 34.615 15.66 0.33 0.00 2.10
1835 4022 6.594744 TCAGATTTTAAGCATGCCATCTCTA 58.405 36.000 15.66 2.31 0.00 2.43
1836 4023 5.443283 TCAGATTTTAAGCATGCCATCTCT 58.557 37.500 15.66 6.67 0.00 3.10
1837 4024 5.762825 TCAGATTTTAAGCATGCCATCTC 57.237 39.130 15.66 4.32 0.00 2.75
1838 4025 5.449588 CGTTCAGATTTTAAGCATGCCATCT 60.450 40.000 15.66 10.65 0.00 2.90
1839 4026 4.736793 CGTTCAGATTTTAAGCATGCCATC 59.263 41.667 15.66 8.52 0.00 3.51
1840 4027 4.158394 ACGTTCAGATTTTAAGCATGCCAT 59.842 37.500 15.66 6.44 0.00 4.40
1841 4028 3.505680 ACGTTCAGATTTTAAGCATGCCA 59.494 39.130 15.66 0.00 0.00 4.92
1842 4029 4.096732 ACGTTCAGATTTTAAGCATGCC 57.903 40.909 15.66 0.00 0.00 4.40
1843 4030 5.629020 TCAAACGTTCAGATTTTAAGCATGC 59.371 36.000 10.51 10.51 0.00 4.06
1844 4031 7.077605 TCTCAAACGTTCAGATTTTAAGCATG 58.922 34.615 0.00 0.00 0.00 4.06
1845 4032 7.202016 TCTCAAACGTTCAGATTTTAAGCAT 57.798 32.000 0.00 0.00 0.00 3.79
1846 4033 6.612247 TCTCAAACGTTCAGATTTTAAGCA 57.388 33.333 0.00 0.00 0.00 3.91
1847 4034 8.507470 AAATCTCAAACGTTCAGATTTTAAGC 57.493 30.769 27.14 0.00 41.89 3.09
1849 4036 9.887406 GGTAAATCTCAAACGTTCAGATTTTAA 57.113 29.630 32.34 21.99 41.89 1.52
1850 4037 8.225107 CGGTAAATCTCAAACGTTCAGATTTTA 58.775 33.333 32.34 22.42 41.89 1.52
1851 4038 7.075741 CGGTAAATCTCAAACGTTCAGATTTT 58.924 34.615 32.34 23.04 41.89 1.82
1852 4039 6.348213 CCGGTAAATCTCAAACGTTCAGATTT 60.348 38.462 31.11 31.11 44.99 2.17
1853 4040 5.121768 CCGGTAAATCTCAAACGTTCAGATT 59.878 40.000 21.48 21.48 38.30 2.40
1854 4041 4.630069 CCGGTAAATCTCAAACGTTCAGAT 59.370 41.667 14.20 14.20 0.00 2.90
1855 4042 3.991773 CCGGTAAATCTCAAACGTTCAGA 59.008 43.478 0.00 6.82 0.00 3.27
1856 4043 3.124636 CCCGGTAAATCTCAAACGTTCAG 59.875 47.826 0.00 0.51 0.00 3.02
1857 4044 3.068560 CCCGGTAAATCTCAAACGTTCA 58.931 45.455 0.00 0.00 0.00 3.18
1858 4045 2.417586 CCCCGGTAAATCTCAAACGTTC 59.582 50.000 0.00 0.00 0.00 3.95
1859 4046 2.224597 ACCCCGGTAAATCTCAAACGTT 60.225 45.455 0.00 0.00 0.00 3.99
1860 4047 1.348696 ACCCCGGTAAATCTCAAACGT 59.651 47.619 0.00 0.00 0.00 3.99
1861 4048 2.004733 GACCCCGGTAAATCTCAAACG 58.995 52.381 0.00 0.00 0.00 3.60
1862 4049 3.345508 AGACCCCGGTAAATCTCAAAC 57.654 47.619 0.00 0.00 0.00 2.93
1863 4050 4.376225 AAAGACCCCGGTAAATCTCAAA 57.624 40.909 0.00 0.00 0.00 2.69
1864 4051 4.376225 AAAAGACCCCGGTAAATCTCAA 57.624 40.909 0.00 0.00 0.00 3.02
1865 4052 4.376225 AAAAAGACCCCGGTAAATCTCA 57.624 40.909 0.00 0.00 0.00 3.27
1884 4071 8.746052 TCTCTGAAAGAAAGTGGACATAAAAA 57.254 30.769 0.00 0.00 46.34 1.94
1885 4072 8.621286 GTTCTCTGAAAGAAAGTGGACATAAAA 58.379 33.333 0.00 0.00 46.34 1.52
1886 4073 7.773224 TGTTCTCTGAAAGAAAGTGGACATAAA 59.227 33.333 0.00 0.00 46.34 1.40
1887 4074 7.279615 TGTTCTCTGAAAGAAAGTGGACATAA 58.720 34.615 0.00 0.00 46.34 1.90
1888 4075 6.826668 TGTTCTCTGAAAGAAAGTGGACATA 58.173 36.000 0.00 0.00 46.34 2.29
1889 4076 5.684704 TGTTCTCTGAAAGAAAGTGGACAT 58.315 37.500 0.00 0.00 46.34 3.06
1969 4188 9.770097 ATTTCGTGTATGATCATTTGAGTCTAT 57.230 29.630 14.65 0.00 0.00 1.98
1998 4217 5.234116 GTGGTCGGTTTTTAGACTCGTAAAA 59.766 40.000 0.00 0.00 37.52 1.52
2068 4291 4.523173 TCTCGGTTCCACATATATGAGACC 59.477 45.833 19.63 16.89 0.00 3.85
2069 4292 5.462405 GTCTCGGTTCCACATATATGAGAC 58.538 45.833 19.63 13.79 42.72 3.36
2071 4294 5.465051 CAGTCTCGGTTCCACATATATGAG 58.535 45.833 19.63 11.29 0.00 2.90
2075 4298 3.068165 CAGCAGTCTCGGTTCCACATATA 59.932 47.826 0.00 0.00 0.00 0.86
2076 4299 2.111384 AGCAGTCTCGGTTCCACATAT 58.889 47.619 0.00 0.00 0.00 1.78
2077 4300 1.204704 CAGCAGTCTCGGTTCCACATA 59.795 52.381 0.00 0.00 0.00 2.29
2078 4301 0.036952 CAGCAGTCTCGGTTCCACAT 60.037 55.000 0.00 0.00 0.00 3.21
2079 4302 1.112916 TCAGCAGTCTCGGTTCCACA 61.113 55.000 0.00 0.00 0.00 4.17
2080 4303 0.667792 GTCAGCAGTCTCGGTTCCAC 60.668 60.000 0.00 0.00 0.00 4.02
2122 4345 2.865551 CACAAAATTTGACCACACCAGC 59.134 45.455 13.19 0.00 0.00 4.85
2139 4362 1.812686 CTCTCCCGTTCGGACCACAA 61.813 60.000 13.08 0.00 34.86 3.33
2140 4363 2.203523 TCTCCCGTTCGGACCACA 60.204 61.111 13.08 0.00 34.86 4.17
2141 4364 2.572284 CTCTCCCGTTCGGACCAC 59.428 66.667 13.08 0.00 34.86 4.16
2142 4365 2.678934 CCTCTCCCGTTCGGACCA 60.679 66.667 13.08 0.00 34.86 4.02
2143 4366 2.362120 TCCTCTCCCGTTCGGACC 60.362 66.667 13.08 0.00 34.86 4.46
2144 4367 1.378124 CTCTCCTCTCCCGTTCGGAC 61.378 65.000 13.08 0.00 34.86 4.79
2145 4368 1.077644 CTCTCCTCTCCCGTTCGGA 60.078 63.158 13.08 0.00 38.83 4.55
2146 4369 2.122167 CCTCTCCTCTCCCGTTCGG 61.122 68.421 4.08 4.08 0.00 4.30
2147 4370 2.776913 GCCTCTCCTCTCCCGTTCG 61.777 68.421 0.00 0.00 0.00 3.95
2149 4372 2.364448 GGCCTCTCCTCTCCCGTT 60.364 66.667 0.00 0.00 0.00 4.44
2150 4373 4.824515 CGGCCTCTCCTCTCCCGT 62.825 72.222 0.00 0.00 34.56 5.28
2163 4398 4.489771 ACCTACCATGCAGCGGCC 62.490 66.667 6.32 0.00 40.13 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.