Multiple sequence alignment - TraesCS2A01G275200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G275200 chr2A 100.000 6389 0 0 1 6389 452587132 452593520 0.000000e+00 11799.0
1 TraesCS2A01G275200 chr2A 84.028 144 8 4 2361 2504 452589426 452589554 2.420000e-24 124.0
2 TraesCS2A01G275200 chr2A 84.028 144 8 4 2295 2423 452589492 452589635 2.420000e-24 124.0
3 TraesCS2A01G275200 chr2A 88.095 84 9 1 518 600 691848820 691848903 1.470000e-16 99.0
4 TraesCS2A01G275200 chr2A 95.000 60 3 0 2445 2504 452589429 452589488 1.900000e-15 95.3
5 TraesCS2A01G275200 chr2A 95.000 60 3 0 2298 2357 452589576 452589635 1.900000e-15 95.3
6 TraesCS2A01G275200 chr2D 96.071 4683 125 30 831 5483 342482768 342487421 0.000000e+00 7574.0
7 TraesCS2A01G275200 chr2D 89.695 262 5 6 5650 5903 342487841 342488088 1.340000e-81 315.0
8 TraesCS2A01G275200 chr2D 98.810 168 2 0 5486 5653 342487615 342487782 3.740000e-77 300.0
9 TraesCS2A01G275200 chr2D 91.304 92 7 1 2361 2452 342484224 342484314 2.420000e-24 124.0
10 TraesCS2A01G275200 chr2D 83.333 144 9 4 2295 2423 342484290 342484433 1.130000e-22 119.0
11 TraesCS2A01G275200 chr2D 87.640 89 10 1 518 605 43277228 43277140 1.130000e-17 102.0
12 TraesCS2A01G275200 chr2D 95.000 60 3 0 2445 2504 342484227 342484286 1.900000e-15 95.3
13 TraesCS2A01G275200 chr2D 95.000 60 3 0 2298 2357 342484374 342484433 1.900000e-15 95.3
14 TraesCS2A01G275200 chr2B 94.709 3591 123 26 2361 5903 407910044 407913615 0.000000e+00 5517.0
15 TraesCS2A01G275200 chr2B 96.217 1216 30 6 1224 2423 407908972 407910187 0.000000e+00 1977.0
16 TraesCS2A01G275200 chr2B 86.847 593 39 16 599 1190 407908037 407908591 1.510000e-175 627.0
17 TraesCS2A01G275200 chr2B 96.667 60 2 0 2298 2357 407910128 407910187 4.080000e-17 100.0
18 TraesCS2A01G275200 chr2B 82.759 87 14 1 518 603 126735191 126735105 6.870000e-10 76.8
19 TraesCS2A01G275200 chr6A 84.878 615 75 6 2 600 125881116 125881728 7.090000e-169 604.0
20 TraesCS2A01G275200 chr7D 88.039 510 57 4 1 510 585427452 585426947 9.170000e-168 601.0
21 TraesCS2A01G275200 chr7D 94.167 120 7 0 5685 5804 586023542 586023423 3.930000e-42 183.0
22 TraesCS2A01G275200 chr7D 90.076 131 12 1 5684 5813 586112661 586112531 1.100000e-37 169.0
23 TraesCS2A01G275200 chr7D 90.909 121 11 0 5684 5804 586105929 586105809 5.130000e-36 163.0
24 TraesCS2A01G275200 chr7D 90.909 121 11 0 5684 5804 586118886 586118766 5.130000e-36 163.0
25 TraesCS2A01G275200 chr7D 86.131 137 18 1 2749 2885 334404948 334404813 5.160000e-31 147.0
26 TraesCS2A01G275200 chr6D 84.790 618 73 8 4 604 328617096 328617709 9.170000e-168 601.0
27 TraesCS2A01G275200 chr6D 84.628 618 74 9 4 604 146943148 146943761 4.260000e-166 595.0
28 TraesCS2A01G275200 chr5D 87.791 516 59 3 1 515 458530721 458530209 9.170000e-168 601.0
29 TraesCS2A01G275200 chr4D 84.420 629 77 9 1 614 51959552 51960174 3.300000e-167 599.0
30 TraesCS2A01G275200 chr4D 91.667 48 1 3 553 600 379914076 379914032 5.350000e-06 63.9
31 TraesCS2A01G275200 chr6B 87.621 517 53 10 1 515 702278622 702278115 1.980000e-164 590.0
32 TraesCS2A01G275200 chr3B 84.959 605 66 11 1 583 157904211 157903610 1.980000e-164 590.0
33 TraesCS2A01G275200 chr3D 84.109 623 76 15 4 608 562219328 562219945 1.190000e-161 580.0
34 TraesCS2A01G275200 chr3D 81.361 617 72 20 4 600 192060470 192059877 4.510000e-126 462.0
35 TraesCS2A01G275200 chr1B 86.545 275 35 2 5903 6176 249207673 249207946 1.040000e-77 302.0
36 TraesCS2A01G275200 chr1B 88.889 153 16 1 6176 6328 249207989 249208140 3.040000e-43 187.0
37 TraesCS2A01G275200 chr1B 93.258 89 6 0 6250 6338 249208109 249208197 1.450000e-26 132.0
38 TraesCS2A01G275200 chr7B 94.215 121 7 0 5684 5804 722089967 722090087 1.090000e-42 185.0
39 TraesCS2A01G275200 chr7B 90.164 122 11 1 5684 5804 656301384 656301263 2.380000e-34 158.0
40 TraesCS2A01G275200 chr7B 88.506 87 8 2 519 604 68533791 68533876 3.150000e-18 104.0
41 TraesCS2A01G275200 chr7A 94.872 117 6 0 5688 5804 677612159 677612043 3.930000e-42 183.0
42 TraesCS2A01G275200 chr7A 86.420 81 10 1 529 608 660167267 660167187 3.170000e-13 87.9
43 TraesCS2A01G275200 chr7A 82.955 88 13 2 519 604 255578055 255578142 1.910000e-10 78.7
44 TraesCS2A01G275200 chr1A 92.683 123 9 0 5682 5804 584507800 584507922 1.830000e-40 178.0
45 TraesCS2A01G275200 chr1A 82.927 82 5 4 519 600 541318797 541318869 1.490000e-06 65.8
46 TraesCS2A01G275200 chr5A 86.364 88 11 1 518 604 64984428 64984515 1.900000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G275200 chr2A 452587132 452593520 6388 False 11799.00 11799 100.000000 1 6389 1 chr2A.!!$F1 6388
1 TraesCS2A01G275200 chr2D 342482768 342488088 5320 False 1231.80 7574 92.744714 831 5903 7 chr2D.!!$F1 5072
2 TraesCS2A01G275200 chr2B 407908037 407913615 5578 False 2055.25 5517 93.610000 599 5903 4 chr2B.!!$F1 5304
3 TraesCS2A01G275200 chr6A 125881116 125881728 612 False 604.00 604 84.878000 2 600 1 chr6A.!!$F1 598
4 TraesCS2A01G275200 chr7D 585426947 585427452 505 True 601.00 601 88.039000 1 510 1 chr7D.!!$R2 509
5 TraesCS2A01G275200 chr6D 328617096 328617709 613 False 601.00 601 84.790000 4 604 1 chr6D.!!$F2 600
6 TraesCS2A01G275200 chr6D 146943148 146943761 613 False 595.00 595 84.628000 4 604 1 chr6D.!!$F1 600
7 TraesCS2A01G275200 chr5D 458530209 458530721 512 True 601.00 601 87.791000 1 515 1 chr5D.!!$R1 514
8 TraesCS2A01G275200 chr4D 51959552 51960174 622 False 599.00 599 84.420000 1 614 1 chr4D.!!$F1 613
9 TraesCS2A01G275200 chr6B 702278115 702278622 507 True 590.00 590 87.621000 1 515 1 chr6B.!!$R1 514
10 TraesCS2A01G275200 chr3B 157903610 157904211 601 True 590.00 590 84.959000 1 583 1 chr3B.!!$R1 582
11 TraesCS2A01G275200 chr3D 562219328 562219945 617 False 580.00 580 84.109000 4 608 1 chr3D.!!$F1 604
12 TraesCS2A01G275200 chr3D 192059877 192060470 593 True 462.00 462 81.361000 4 600 1 chr3D.!!$R1 596
13 TraesCS2A01G275200 chr1B 249207673 249208197 524 False 207.00 302 89.564000 5903 6338 3 chr1B.!!$F1 435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 632 0.249531 TCGGTGCGTTGAAGTTGCTA 60.250 50.000 0.0 0.0 0.00 3.49 F
917 955 0.256464 CCCAGTCCCGTCTCTCTAGT 59.744 60.000 0.0 0.0 0.00 2.57 F
1823 2211 0.991920 GGTGGGAGACTTGGGATTCA 59.008 55.000 0.0 0.0 0.00 2.57 F
2490 2878 1.001393 TCGGAAGGTGGAAATGCCC 60.001 57.895 0.0 0.0 34.97 5.36 F
4255 4650 1.753073 AGCAGAAAAGTATGCCATGCC 59.247 47.619 0.0 0.0 43.25 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 2775 1.697432 ACATTTCCACCTTCCGAGTCA 59.303 47.619 0.00 0.0 0.00 3.41 R
2715 3103 1.623811 TGAGGCCACTGGAGTACTTTC 59.376 52.381 5.01 0.0 0.00 2.62 R
3091 3479 2.608506 GCCCCCGTGATTTTTGTAACAC 60.609 50.000 0.00 0.0 0.00 3.32 R
4374 4771 1.338020 GCTAGCACAGTTTTTGCCAGT 59.662 47.619 10.63 0.0 41.18 4.00 R
5970 6659 0.179111 TCCGATGATCACCGTGCTTC 60.179 55.000 9.03 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.536915 GGATGCTTGAGATGGAGGCC 60.537 60.000 0.00 0.00 0.00 5.19
56 57 1.395045 ATGCTCGAGATTGAGGCCGA 61.395 55.000 18.75 0.00 36.47 5.54
72 73 0.958091 CCGACAATGCCAAGACCAAA 59.042 50.000 0.00 0.00 0.00 3.28
87 88 0.385974 CCAAAGCGAAAGAAGTGGCG 60.386 55.000 0.00 0.00 0.00 5.69
109 110 3.150949 CTAGCATGATGGCGGGGA 58.849 61.111 0.00 0.00 39.27 4.81
163 164 1.755783 CCAAGGAAGAGGCCATGGC 60.756 63.158 29.47 29.47 39.65 4.40
270 271 2.665000 CTGGCATGACCACGACCT 59.335 61.111 0.00 0.00 46.36 3.85
329 339 1.962822 CATGTGTGCCTGTCGCTGT 60.963 57.895 0.00 0.00 38.78 4.40
349 359 0.998226 CAAGTGCGCCAACATGAACG 60.998 55.000 4.18 0.00 0.00 3.95
416 430 1.664965 GCTGGCGTGAACTTCGAGT 60.665 57.895 0.00 0.00 0.00 4.18
432 446 0.388649 GAGTGACGACATGACCGCTT 60.389 55.000 0.00 0.00 0.00 4.68
453 467 1.544982 GCATGATCTATGGCTGCTGGT 60.545 52.381 0.00 0.00 37.26 4.00
500 516 1.001068 TGAAATGGGTCGCAGTCGTTA 59.999 47.619 0.00 0.00 36.96 3.18
510 526 1.372997 CAGTCGTTAGGCGCACTGT 60.373 57.895 10.83 0.00 40.45 3.55
567 599 2.732597 CGGTCAAAAGCGGACAAAAACA 60.733 45.455 0.00 0.00 42.53 2.83
585 617 2.349755 CCATCCGTTTGGGTCGGT 59.650 61.111 4.36 0.00 46.86 4.69
592 624 2.181521 GTTTGGGTCGGTGCGTTGA 61.182 57.895 0.00 0.00 0.00 3.18
600 632 0.249531 TCGGTGCGTTGAAGTTGCTA 60.250 50.000 0.00 0.00 0.00 3.49
609 641 7.042321 GGTGCGTTGAAGTTGCTATAACATATA 60.042 37.037 0.00 0.00 0.00 0.86
612 644 9.318041 GCGTTGAAGTTGCTATAACATATATTG 57.682 33.333 0.00 0.00 0.00 1.90
669 701 1.135689 GGGCATGCAACTGAAGTTACG 60.136 52.381 21.36 0.00 36.32 3.18
671 703 1.197721 GCATGCAACTGAAGTTACGCT 59.802 47.619 14.21 0.00 36.32 5.07
673 705 1.136690 TGCAACTGAAGTTACGCTCG 58.863 50.000 6.95 0.00 36.32 5.03
683 715 0.454600 GTTACGCTCGACTGGATGGA 59.545 55.000 0.00 0.00 0.00 3.41
696 728 3.181445 ACTGGATGGACTTGCAAGTGTAA 60.181 43.478 35.67 20.34 39.88 2.41
718 750 7.656542 TGTAATTGTATACACCGTGAAAAGACA 59.343 33.333 4.68 1.51 31.03 3.41
724 756 4.974368 ACACCGTGAAAAGACAATTGAA 57.026 36.364 13.59 0.00 0.00 2.69
725 757 4.920376 ACACCGTGAAAAGACAATTGAAG 58.080 39.130 13.59 0.00 0.00 3.02
785 818 9.237846 GAAAAGAAAAAGATGAAGAACATTCGT 57.762 29.630 0.00 0.00 39.56 3.85
828 861 6.840780 AAATATCCACACTCTTTTTCAGGG 57.159 37.500 0.00 0.00 0.00 4.45
829 862 2.656947 TCCACACTCTTTTTCAGGGG 57.343 50.000 0.00 0.00 0.00 4.79
870 908 1.989966 CTTCATTGAGCCTGCCTGCG 61.990 60.000 0.00 0.00 36.02 5.18
893 931 4.495349 GCATCTTCTCGGTGTCAATTGATG 60.495 45.833 12.12 2.27 33.93 3.07
915 953 1.076923 GCCCAGTCCCGTCTCTCTA 60.077 63.158 0.00 0.00 0.00 2.43
916 954 1.104577 GCCCAGTCCCGTCTCTCTAG 61.105 65.000 0.00 0.00 0.00 2.43
917 955 0.256464 CCCAGTCCCGTCTCTCTAGT 59.744 60.000 0.00 0.00 0.00 2.57
918 956 1.489649 CCCAGTCCCGTCTCTCTAGTA 59.510 57.143 0.00 0.00 0.00 1.82
919 957 2.106857 CCCAGTCCCGTCTCTCTAGTAT 59.893 54.545 0.00 0.00 0.00 2.12
920 958 3.142951 CCAGTCCCGTCTCTCTAGTATG 58.857 54.545 0.00 0.00 0.00 2.39
932 970 8.737175 CGTCTCTCTAGTATGAGTACTCTCTAT 58.263 40.741 23.01 11.34 41.35 1.98
1095 1133 4.173924 GCTGCTCTGAGCCCTCCC 62.174 72.222 25.61 6.76 41.51 4.30
1315 1700 1.600636 CACGCTGTGGGAATGGTGT 60.601 57.895 1.40 0.00 0.00 4.16
1323 1708 1.204786 TGGGAATGGTGTCCGGTGAT 61.205 55.000 0.00 0.00 38.72 3.06
1381 1768 3.424962 GCTTCACTGAAAGGTATGCGTTC 60.425 47.826 0.00 0.00 39.30 3.95
1382 1769 3.678056 TCACTGAAAGGTATGCGTTCT 57.322 42.857 0.00 0.00 39.30 3.01
1629 2016 1.281899 GTATGCACGTTCTCTCCTGC 58.718 55.000 0.00 0.00 0.00 4.85
1823 2211 0.991920 GGTGGGAGACTTGGGATTCA 59.008 55.000 0.00 0.00 0.00 2.57
1831 2219 2.094675 GACTTGGGATTCACACATGGG 58.905 52.381 0.00 0.00 32.32 4.00
1930 2318 9.119418 CAATTTTATTCAAAAGTTTGGACCCTT 57.881 29.630 4.04 0.00 37.08 3.95
2172 2560 7.826252 ACATTGAGTGTAATGTATCTCTTGCTT 59.174 33.333 2.56 0.00 46.40 3.91
2302 2690 3.009723 CCGATTGGACTTGCACTATGTT 58.990 45.455 0.00 0.00 37.49 2.71
2358 2746 2.284754 TGCCACCAGTGCTGAAAATA 57.715 45.000 0.02 0.00 0.00 1.40
2387 2775 3.662148 TGTCCCCTGATAATATGCCCAAT 59.338 43.478 0.00 0.00 0.00 3.16
2435 2823 3.056607 GTGCTAAAAATGCCACCATGTCT 60.057 43.478 0.00 0.00 0.00 3.41
2490 2878 1.001393 TCGGAAGGTGGAAATGCCC 60.001 57.895 0.00 0.00 34.97 5.36
2530 2918 6.098266 TCAGTAGAACTGCTGGCTAAATATCA 59.902 38.462 17.00 0.00 45.54 2.15
2744 3132 1.815003 CCAGTGGCCTCATTGAAGAAC 59.185 52.381 3.32 0.00 33.10 3.01
2876 3264 8.398665 GTGAGTTATAAATCCCACAGCTAAAAG 58.601 37.037 10.23 0.00 0.00 2.27
2877 3265 8.107095 TGAGTTATAAATCCCACAGCTAAAAGT 58.893 33.333 10.23 0.00 0.00 2.66
2885 3273 5.175859 TCCCACAGCTAAAAGTTTAGATCG 58.824 41.667 13.75 6.14 42.05 3.69
2972 3360 7.724305 AATAGTTAATATGCAACTACCACCG 57.276 36.000 10.75 0.00 40.35 4.94
3021 3409 4.164221 TGTCTCCTCCAATTAGGACATTCC 59.836 45.833 0.00 0.00 43.07 3.01
3038 3426 6.293462 GGACATTCCCGATTTAGCTTTATCAC 60.293 42.308 0.00 0.00 0.00 3.06
3091 3479 5.003692 TGTACTCAAGAGAAGCATAGCTG 57.996 43.478 3.73 0.00 39.62 4.24
3201 3590 7.103641 AGTCATTTAGATACACCGTCAATGTT 58.896 34.615 0.00 0.00 0.00 2.71
3307 3696 6.014755 TGCCCTTTGTGACATTTCATGATTAA 60.015 34.615 0.00 0.00 33.11 1.40
3308 3697 7.043565 GCCCTTTGTGACATTTCATGATTAAT 58.956 34.615 0.00 0.00 33.11 1.40
3309 3698 7.550196 GCCCTTTGTGACATTTCATGATTAATT 59.450 33.333 0.00 0.00 33.11 1.40
3366 3757 5.817296 TGATTACTGGGATGAAACAGATTCG 59.183 40.000 0.00 0.00 41.18 3.34
3650 4044 6.597832 AGCTAGTGATCTTAGTTGTGTTCT 57.402 37.500 0.00 0.00 0.00 3.01
3886 4280 8.806146 ACTTGTTAAATGCTGATGGTTAAAGAT 58.194 29.630 0.00 0.00 0.00 2.40
4255 4650 1.753073 AGCAGAAAAGTATGCCATGCC 59.247 47.619 0.00 0.00 43.25 4.40
4307 4704 6.884836 GCCACCTTCTTCCTTAATTCTTAAGA 59.115 38.462 0.00 0.00 44.19 2.10
4374 4771 4.893524 TCCACTCTCTGTTACTTGACTCAA 59.106 41.667 0.00 0.00 0.00 3.02
4509 4906 6.409695 CCCAGTCATTATCTATTTCCACACCT 60.410 42.308 0.00 0.00 0.00 4.00
4572 4969 2.972625 TCGGTTGGATTCTGCTACTTG 58.027 47.619 0.00 0.00 0.00 3.16
4642 5039 0.033699 GGTCGAGTGGTAGTACCCCT 60.034 60.000 16.91 10.69 37.50 4.79
4676 5073 5.843421 AGGAAGCAGTAGGATTGTCTATGAT 59.157 40.000 0.00 0.00 0.00 2.45
4755 5152 7.141363 GTGCCCATGATTAGCTAATTTGTTAG 58.859 38.462 19.77 11.88 0.00 2.34
4794 5191 0.950836 TGGTCTTGTTCATTGCACCG 59.049 50.000 0.00 0.00 0.00 4.94
4807 5204 1.021202 TGCACCGAAGTCCAAAACTG 58.979 50.000 0.00 0.00 38.58 3.16
4969 5367 5.242393 AGGGTAATGCATGCATAATCTGAAC 59.758 40.000 32.36 19.37 35.31 3.18
5075 5473 8.019669 GCAATGCATAACTTATCATGTAGAAGG 58.980 37.037 0.00 0.00 30.30 3.46
5085 5483 2.012673 CATGTAGAAGGGCAGTGAAGC 58.987 52.381 0.00 0.00 0.00 3.86
5143 5545 5.564550 AGGATATGGATGCATAACTTGTCC 58.435 41.667 11.23 12.42 0.00 4.02
5277 5697 0.800012 CTGCCAAATTTGCATGCCAC 59.200 50.000 16.68 0.00 38.22 5.01
5278 5698 0.397187 TGCCAAATTTGCATGCCACT 59.603 45.000 16.68 0.00 32.85 4.00
5279 5699 1.081094 GCCAAATTTGCATGCCACTC 58.919 50.000 16.68 0.00 0.00 3.51
5280 5700 1.608542 GCCAAATTTGCATGCCACTCA 60.609 47.619 16.68 0.00 0.00 3.41
5281 5701 2.343101 CCAAATTTGCATGCCACTCAG 58.657 47.619 16.68 1.10 0.00 3.35
5296 5716 6.528321 TGCCACTCAGTACTACGTATATAGT 58.472 40.000 0.00 0.00 38.89 2.12
5381 5804 1.675641 CAAGGAAGACAAGGGGGCG 60.676 63.158 0.00 0.00 0.00 6.13
5718 6394 1.230324 GTTTCAGCTCGTTTCTGGCT 58.770 50.000 0.00 0.00 36.70 4.75
5830 6518 1.122019 AAGAGTGGGTCCGTTCTGCT 61.122 55.000 0.00 0.00 0.00 4.24
5859 6547 1.609061 CGAGTGGGAGCATCAGTTTGT 60.609 52.381 0.00 0.00 36.25 2.83
5867 6555 2.680339 GAGCATCAGTTTGTTCCTAGGC 59.320 50.000 2.96 0.00 33.17 3.93
5908 6596 5.820947 GGAAAGCTCGTTAATAAATGGGAGA 59.179 40.000 0.00 0.00 0.00 3.71
5927 6615 1.532007 GACGCTAGGGATCAGACTACG 59.468 57.143 14.59 4.05 0.00 3.51
5931 6619 2.750712 GCTAGGGATCAGACTACGGATC 59.249 54.545 0.00 0.00 43.44 3.36
5957 6645 3.756963 TGCGTTGTATCAGACTAGTCACT 59.243 43.478 24.44 10.77 0.00 3.41
5961 6649 5.642686 GTTGTATCAGACTAGTCACTGACC 58.357 45.833 24.44 13.83 44.18 4.02
5970 6659 4.193090 ACTAGTCACTGACCGTAGATGAG 58.807 47.826 5.51 0.00 32.18 2.90
5982 6671 2.223595 CGTAGATGAGAAGCACGGTGAT 60.224 50.000 13.29 1.50 0.00 3.06
5986 6675 2.299993 TGAGAAGCACGGTGATCATC 57.700 50.000 13.29 8.00 0.00 2.92
6005 6694 1.067142 TCGGATCCAGCAGTACAACAC 60.067 52.381 13.41 0.00 0.00 3.32
6006 6695 1.739067 GGATCCAGCAGTACAACACC 58.261 55.000 6.95 0.00 0.00 4.16
6007 6696 1.003118 GGATCCAGCAGTACAACACCA 59.997 52.381 6.95 0.00 0.00 4.17
6008 6697 2.076863 GATCCAGCAGTACAACACCAC 58.923 52.381 0.00 0.00 0.00 4.16
6010 6699 1.569493 CAGCAGTACAACACCACGC 59.431 57.895 0.00 0.00 0.00 5.34
6016 6705 1.270274 AGTACAACACCACGCGTGATA 59.730 47.619 39.10 17.71 46.20 2.15
6017 6706 1.652124 GTACAACACCACGCGTGATAG 59.348 52.381 39.10 27.74 46.20 2.08
6087 6776 5.534207 TTGTTTCCTAACAACGACTCCTA 57.466 39.130 0.00 0.00 46.46 2.94
6093 6782 7.472334 TTCCTAACAACGACTCCTATAAACT 57.528 36.000 0.00 0.00 0.00 2.66
6117 6806 3.486875 GGGAACGTCAAATTGATTAGGCG 60.487 47.826 0.00 0.00 0.00 5.52
6122 6811 3.489059 CGTCAAATTGATTAGGCGCCATT 60.489 43.478 31.54 15.65 0.00 3.16
6151 6840 4.906065 TGCATGAGATTTGCTTCCATAC 57.094 40.909 0.00 0.00 40.77 2.39
6156 6845 6.200286 GCATGAGATTTGCTTCCATACATTTG 59.800 38.462 0.00 0.00 37.14 2.32
6165 6854 6.397272 TGCTTCCATACATTTGTTTCCAATC 58.603 36.000 0.00 0.00 0.00 2.67
6176 6865 4.712122 TGTTTCCAATCCTTATTTCGGC 57.288 40.909 0.00 0.00 0.00 5.54
6177 6866 3.445805 TGTTTCCAATCCTTATTTCGGCC 59.554 43.478 0.00 0.00 0.00 6.13
6181 6913 1.002468 CAATCCTTATTTCGGCCAGCG 60.002 52.381 2.24 0.00 0.00 5.18
6183 6915 0.825410 TCCTTATTTCGGCCAGCGTA 59.175 50.000 2.24 0.00 0.00 4.42
6199 6931 4.799949 CCAGCGTATCAAATTGTTTCCATG 59.200 41.667 0.00 0.00 0.00 3.66
6200 6932 4.799949 CAGCGTATCAAATTGTTTCCATGG 59.200 41.667 4.97 4.97 0.00 3.66
6214 6946 9.835389 ATTGTTTCCATGGAAAATATACATTGG 57.165 29.630 35.70 0.00 44.40 3.16
6216 6948 8.820831 TGTTTCCATGGAAAATATACATTGGTT 58.179 29.630 35.70 0.00 44.40 3.67
6239 6971 8.346300 GGTTACATTGGGTTAAATTTTGTTTGG 58.654 33.333 0.00 0.00 0.00 3.28
6247 6979 8.440771 TGGGTTAAATTTTGTTTGGTAATGGAT 58.559 29.630 0.00 0.00 0.00 3.41
6253 7032 8.504812 AATTTTGTTTGGTAATGGATATTGCC 57.495 30.769 0.00 0.00 45.93 4.52
6262 7041 1.434188 TGGATATTGCCTCCATCGGT 58.566 50.000 0.00 0.00 37.87 4.69
6286 7065 7.595130 GGTTTAGGATTTGTTTGCTTCAGTTAG 59.405 37.037 0.00 0.00 0.00 2.34
6293 7072 3.378742 TGTTTGCTTCAGTTAGCCGAAAA 59.621 39.130 0.00 0.00 40.49 2.29
6328 7107 3.501950 GGCTTAGGATTTGTTTGCTTCG 58.498 45.455 0.00 0.00 0.00 3.79
6331 7110 4.723248 CTTAGGATTTGTTTGCTTCGGTC 58.277 43.478 0.00 0.00 0.00 4.79
6338 7117 0.317854 GTTTGCTTCGGTCAGCCAAC 60.318 55.000 4.27 4.27 38.01 3.77
6339 7118 0.465460 TTTGCTTCGGTCAGCCAACT 60.465 50.000 0.54 0.00 39.25 3.16
6340 7119 1.165907 TTGCTTCGGTCAGCCAACTG 61.166 55.000 0.54 0.00 45.95 3.16
6349 7128 2.510906 AGCCAACTGACCAACGCT 59.489 55.556 0.00 0.00 0.00 5.07
6350 7129 1.152963 AGCCAACTGACCAACGCTT 60.153 52.632 0.00 0.00 0.00 4.68
6351 7130 1.008538 GCCAACTGACCAACGCTTG 60.009 57.895 0.00 0.00 0.00 4.01
6378 7157 9.601971 GATCTAGTTAGATCGTATTTGTGTCTC 57.398 37.037 12.09 0.00 46.31 3.36
6379 7158 7.628235 TCTAGTTAGATCGTATTTGTGTCTCG 58.372 38.462 0.00 0.00 0.00 4.04
6380 7159 6.192234 AGTTAGATCGTATTTGTGTCTCGT 57.808 37.500 0.00 0.00 0.00 4.18
6381 7160 6.028368 AGTTAGATCGTATTTGTGTCTCGTG 58.972 40.000 0.00 0.00 0.00 4.35
6382 7161 4.436242 AGATCGTATTTGTGTCTCGTGT 57.564 40.909 0.00 0.00 0.00 4.49
6383 7162 5.556355 AGATCGTATTTGTGTCTCGTGTA 57.444 39.130 0.00 0.00 0.00 2.90
6384 7163 5.330295 AGATCGTATTTGTGTCTCGTGTAC 58.670 41.667 0.00 0.00 0.00 2.90
6385 7164 3.481839 TCGTATTTGTGTCTCGTGTACG 58.518 45.455 0.00 0.00 41.45 3.67
6386 7165 2.026038 CGTATTTGTGTCTCGTGTACGC 59.974 50.000 0.00 0.00 39.60 4.42
6387 7166 2.143008 ATTTGTGTCTCGTGTACGCA 57.857 45.000 7.29 0.00 39.60 5.24
6388 7167 1.923899 TTTGTGTCTCGTGTACGCAA 58.076 45.000 7.29 8.64 43.52 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.098376 GCATCTTGGCTTGCTTCTCG 59.902 55.000 0.00 0.00 35.95 4.04
42 43 0.933097 CATTGTCGGCCTCAATCTCG 59.067 55.000 16.56 6.17 33.92 4.04
56 57 0.314935 CGCTTTGGTCTTGGCATTGT 59.685 50.000 0.00 0.00 0.00 2.71
103 104 0.397941 TTCATGATCTCCATCCCCGC 59.602 55.000 0.00 0.00 31.94 6.13
109 110 4.241151 AGATCCACCTTCATGATCTCCAT 58.759 43.478 0.00 0.00 40.88 3.41
163 164 0.735471 TCGGTCTGCATCTTCTCGAG 59.265 55.000 5.93 5.93 0.00 4.04
270 271 0.167470 GAGTTCGACCACGTCATCGA 59.833 55.000 14.89 14.89 45.17 3.59
329 339 0.310543 GTTCATGTTGGCGCACTTGA 59.689 50.000 10.83 10.97 0.00 3.02
349 359 2.427095 AGCTTCAGAAAAACACCACACC 59.573 45.455 0.00 0.00 0.00 4.16
400 413 0.596600 GTCACTCGAAGTTCACGCCA 60.597 55.000 3.32 0.00 0.00 5.69
416 430 2.027073 GCAAGCGGTCATGTCGTCA 61.027 57.895 11.42 0.00 0.00 4.35
426 440 1.888215 CCATAGATCATGCAAGCGGT 58.112 50.000 0.00 0.00 32.84 5.68
432 446 1.544759 CCAGCAGCCATAGATCATGCA 60.545 52.381 0.00 0.00 39.34 3.96
500 516 4.406173 CGAGTCGACAGTGCGCCT 62.406 66.667 19.50 0.00 0.00 5.52
549 579 2.231478 TGGTGTTTTTGTCCGCTTTTGA 59.769 40.909 0.00 0.00 0.00 2.69
585 617 6.918892 ATATGTTATAGCAACTTCAACGCA 57.081 33.333 0.00 0.00 0.00 5.24
669 701 1.086634 GCAAGTCCATCCAGTCGAGC 61.087 60.000 0.00 0.00 0.00 5.03
671 703 0.684535 TTGCAAGTCCATCCAGTCGA 59.315 50.000 0.00 0.00 0.00 4.20
673 705 1.808945 CACTTGCAAGTCCATCCAGTC 59.191 52.381 28.97 0.00 37.08 3.51
696 728 7.681939 ATTGTCTTTTCACGGTGTATACAAT 57.318 32.000 7.25 13.66 31.95 2.71
734 766 7.503230 TCTTCGGTTGGACTAATTTACCTTTTT 59.497 33.333 0.00 0.00 0.00 1.94
739 771 6.806388 TTTCTTCGGTTGGACTAATTTACC 57.194 37.500 0.00 0.00 0.00 2.85
740 772 8.091385 TCTTTTCTTCGGTTGGACTAATTTAC 57.909 34.615 0.00 0.00 0.00 2.01
755 788 8.841444 TGTTCTTCATCTTTTTCTTTTCTTCG 57.159 30.769 0.00 0.00 0.00 3.79
803 836 7.256296 CCCCTGAAAAAGAGTGTGGATATTTTT 60.256 37.037 0.00 0.00 36.17 1.94
804 837 6.211384 CCCCTGAAAAAGAGTGTGGATATTTT 59.789 38.462 0.00 0.00 0.00 1.82
805 838 5.716703 CCCCTGAAAAAGAGTGTGGATATTT 59.283 40.000 0.00 0.00 0.00 1.40
806 839 5.015178 TCCCCTGAAAAAGAGTGTGGATATT 59.985 40.000 0.00 0.00 0.00 1.28
807 840 4.540099 TCCCCTGAAAAAGAGTGTGGATAT 59.460 41.667 0.00 0.00 0.00 1.63
808 841 3.913799 TCCCCTGAAAAAGAGTGTGGATA 59.086 43.478 0.00 0.00 0.00 2.59
809 842 2.716424 TCCCCTGAAAAAGAGTGTGGAT 59.284 45.455 0.00 0.00 0.00 3.41
810 843 2.131854 TCCCCTGAAAAAGAGTGTGGA 58.868 47.619 0.00 0.00 0.00 4.02
811 844 2.656947 TCCCCTGAAAAAGAGTGTGG 57.343 50.000 0.00 0.00 0.00 4.17
821 854 5.261216 GAGTGTGGATATTTTCCCCTGAAA 58.739 41.667 0.00 0.00 44.77 2.69
822 855 4.325030 GGAGTGTGGATATTTTCCCCTGAA 60.325 45.833 0.00 0.00 44.77 3.02
823 856 3.202151 GGAGTGTGGATATTTTCCCCTGA 59.798 47.826 0.00 0.00 44.77 3.86
824 857 3.053693 TGGAGTGTGGATATTTTCCCCTG 60.054 47.826 0.00 0.00 44.77 4.45
825 858 3.197983 TGGAGTGTGGATATTTTCCCCT 58.802 45.455 0.00 0.00 44.77 4.79
826 859 3.662759 TGGAGTGTGGATATTTTCCCC 57.337 47.619 0.00 0.00 44.77 4.81
827 860 5.183904 GCATATGGAGTGTGGATATTTTCCC 59.816 44.000 4.56 0.00 44.77 3.97
828 861 6.006449 AGCATATGGAGTGTGGATATTTTCC 58.994 40.000 4.56 0.00 45.69 3.13
829 862 7.229306 TGAAGCATATGGAGTGTGGATATTTTC 59.771 37.037 4.56 0.00 0.00 2.29
870 908 3.002791 TCAATTGACACCGAGAAGATGC 58.997 45.455 3.38 0.00 0.00 3.91
893 931 3.003763 AGACGGGACTGGGCCTTC 61.004 66.667 4.53 0.40 0.00 3.46
915 953 7.534723 AGACGAGATAGAGAGTACTCATACT 57.465 40.000 24.44 20.00 44.74 2.12
916 954 6.525628 CGAGACGAGATAGAGAGTACTCATAC 59.474 46.154 24.44 14.56 44.79 2.39
917 955 6.614160 CGAGACGAGATAGAGAGTACTCATA 58.386 44.000 24.44 16.30 44.79 2.15
918 956 5.466819 CGAGACGAGATAGAGAGTACTCAT 58.533 45.833 24.44 14.69 44.79 2.90
919 957 4.793678 GCGAGACGAGATAGAGAGTACTCA 60.794 50.000 24.44 4.70 44.79 3.41
920 958 3.671928 GCGAGACGAGATAGAGAGTACTC 59.328 52.174 15.41 15.41 42.90 2.59
932 970 2.564975 GGAAACGGCGAGACGAGA 59.435 61.111 16.62 0.00 37.61 4.04
1080 1118 1.992277 GAAGGGAGGGCTCAGAGCA 60.992 63.158 24.09 0.00 44.75 4.26
1095 1133 3.330720 AACGGGGCAGGGGAGAAG 61.331 66.667 0.00 0.00 0.00 2.85
1315 1700 2.297895 CCCTTCCACCATCACCGGA 61.298 63.158 9.46 0.00 0.00 5.14
1323 1708 2.610859 GCTCCTCCCCTTCCACCA 60.611 66.667 0.00 0.00 0.00 4.17
1381 1768 4.966850 TCGCAAAGTCGTAGAAAGAAAG 57.033 40.909 0.00 0.00 39.69 2.62
1382 1769 4.387862 GGATCGCAAAGTCGTAGAAAGAAA 59.612 41.667 0.00 0.00 39.69 2.52
1618 2005 3.033368 AGAAGAAACGCAGGAGAGAAC 57.967 47.619 0.00 0.00 0.00 3.01
1831 2219 7.279750 TCAATAAAACAGTTTGGGTAAGACC 57.720 36.000 0.00 0.00 37.60 3.85
1930 2318 5.677319 ATTAAGAAGGTCCTCGATGAACA 57.323 39.130 8.51 0.00 0.00 3.18
2172 2560 5.675684 TCACCAGTATATGTTTCTGCAGA 57.324 39.130 13.74 13.74 0.00 4.26
2302 2690 2.988148 TCATTGGGCATATGATCAGGGA 59.012 45.455 6.97 2.81 0.00 4.20
2358 2746 1.979809 TTATCAGGGGACATGGTGGT 58.020 50.000 0.00 0.00 0.00 4.16
2387 2775 1.697432 ACATTTCCACCTTCCGAGTCA 59.303 47.619 0.00 0.00 0.00 3.41
2435 2823 3.636018 TCAGGGGACATATGATCAGGA 57.364 47.619 10.38 0.00 0.00 3.86
2530 2918 2.969950 TCAGGCGGTACTATGGCTAAAT 59.030 45.455 8.54 0.00 39.20 1.40
2715 3103 1.623811 TGAGGCCACTGGAGTACTTTC 59.376 52.381 5.01 0.00 0.00 2.62
2876 3264 8.912787 TCAAAGACTGATTACTCGATCTAAAC 57.087 34.615 0.00 0.00 0.00 2.01
2877 3265 9.355215 GTTCAAAGACTGATTACTCGATCTAAA 57.645 33.333 0.00 0.00 32.78 1.85
3021 3409 5.332355 GCAGTACGTGATAAAGCTAAATCGG 60.332 44.000 0.00 0.00 0.00 4.18
3091 3479 2.608506 GCCCCCGTGATTTTTGTAACAC 60.609 50.000 0.00 0.00 0.00 3.32
3309 3698 8.397906 GCTACAGAAATAGTGTCATTGCAAATA 58.602 33.333 1.71 0.00 0.00 1.40
3366 3757 6.088824 CACAACATTGAACCTAAAGATGCTC 58.911 40.000 0.00 0.00 0.00 4.26
4052 4447 2.738643 CGAAGTGGTGTGATATCGGCTT 60.739 50.000 0.00 0.00 0.00 4.35
4127 4522 6.422776 AATCATTACAAGTTTACTCCTGCG 57.577 37.500 0.00 0.00 0.00 5.18
4255 4650 4.867047 AGTCAATCTTGATCACAGTAAGCG 59.133 41.667 0.00 0.00 39.73 4.68
4374 4771 1.338020 GCTAGCACAGTTTTTGCCAGT 59.662 47.619 10.63 0.00 41.18 4.00
4642 5039 3.648067 CCTACTGCTTCCTGGATCCAATA 59.352 47.826 17.00 3.53 0.00 1.90
4717 5114 0.749649 TGGGCACAAACACACAATCC 59.250 50.000 0.00 0.00 0.00 3.01
4755 5152 8.507524 AGACCAAACTAGGATAATTTAAGCAC 57.492 34.615 0.00 0.00 0.00 4.40
4794 5191 5.560966 TTCACTGTTCAGTTTTGGACTTC 57.439 39.130 2.47 0.00 36.10 3.01
4807 5204 5.180868 ACTCTTCTTGCATCATTCACTGTTC 59.819 40.000 0.00 0.00 0.00 3.18
4969 5367 4.785301 ACACTATGAAGGGATGGTGAATG 58.215 43.478 0.00 0.00 37.06 2.67
5150 5552 5.396213 GCCATTAGCAGATAGATCTAAGGGG 60.396 48.000 6.52 0.00 41.75 4.79
5151 5553 5.669477 GCCATTAGCAGATAGATCTAAGGG 58.331 45.833 6.52 2.52 43.32 3.95
5296 5716 7.227910 GTGATTATTATGCTTACCGAGGGAAAA 59.772 37.037 0.00 0.00 0.00 2.29
5381 5804 2.230266 GTCCAAGAGGTCACTCAGAGAC 59.770 54.545 3.79 0.00 46.44 3.36
5718 6394 2.023695 AGGAGGTCCGTATCCTAAACCA 60.024 50.000 0.00 0.00 44.28 3.67
5807 6489 0.735287 GAACGGACCCACTCTTACGC 60.735 60.000 0.00 0.00 0.00 4.42
5830 6518 4.343814 TGATGCTCCCACTCGACATAATAA 59.656 41.667 0.00 0.00 0.00 1.40
5859 6547 0.543410 TTCCGTGGTCAGCCTAGGAA 60.543 55.000 14.75 8.48 43.35 3.36
5908 6596 1.595466 CGTAGTCTGATCCCTAGCGT 58.405 55.000 0.00 0.00 0.00 5.07
5927 6615 2.158957 TCTGATACAACGCAAGGGATCC 60.159 50.000 1.92 1.92 46.39 3.36
5931 6619 2.386661 AGTCTGATACAACGCAAGGG 57.613 50.000 0.00 0.00 46.39 3.95
5939 6627 4.395231 CGGTCAGTGACTAGTCTGATACAA 59.605 45.833 23.01 0.00 41.67 2.41
5940 6628 3.939592 CGGTCAGTGACTAGTCTGATACA 59.060 47.826 23.01 0.00 41.67 2.29
5941 6629 3.940221 ACGGTCAGTGACTAGTCTGATAC 59.060 47.826 23.01 12.93 41.67 2.24
5957 6645 1.132453 CGTGCTTCTCATCTACGGTCA 59.868 52.381 0.00 0.00 0.00 4.02
5961 6649 1.132453 TCACCGTGCTTCTCATCTACG 59.868 52.381 0.00 0.00 34.78 3.51
5970 6659 0.179111 TCCGATGATCACCGTGCTTC 60.179 55.000 9.03 0.00 0.00 3.86
5982 6671 1.775385 TGTACTGCTGGATCCGATGA 58.225 50.000 7.39 0.00 0.00 2.92
5986 6675 1.359848 GTGTTGTACTGCTGGATCCG 58.640 55.000 7.39 3.14 0.00 4.18
5992 6681 1.569493 GCGTGGTGTTGTACTGCTG 59.431 57.895 0.00 0.00 0.00 4.41
5993 6682 1.954146 CGCGTGGTGTTGTACTGCT 60.954 57.895 0.00 0.00 0.00 4.24
6010 6699 3.794564 TGCATACAAACTACGCTATCACG 59.205 43.478 0.00 0.00 39.50 4.35
6016 6705 2.093306 TGCTGCATACAAACTACGCT 57.907 45.000 0.00 0.00 0.00 5.07
6017 6706 2.708514 CATGCTGCATACAAACTACGC 58.291 47.619 15.78 0.00 0.00 4.42
6019 6708 2.095853 ACGCATGCTGCATACAAACTAC 59.904 45.455 15.78 0.00 45.36 2.73
6027 6716 0.946528 GGAATCACGCATGCTGCATA 59.053 50.000 15.78 0.00 45.36 3.14
6075 6764 5.513233 TCCCTAGTTTATAGGAGTCGTTGT 58.487 41.667 2.43 0.00 36.85 3.32
6076 6765 6.271566 GTTCCCTAGTTTATAGGAGTCGTTG 58.728 44.000 2.43 0.00 36.85 4.10
6080 6769 5.591877 TGACGTTCCCTAGTTTATAGGAGTC 59.408 44.000 2.43 7.04 36.85 3.36
6087 6776 8.575649 AATCAATTTGACGTTCCCTAGTTTAT 57.424 30.769 0.15 0.00 0.00 1.40
6093 6782 4.879545 GCCTAATCAATTTGACGTTCCCTA 59.120 41.667 0.15 0.00 0.00 3.53
6117 6806 2.691526 TCTCATGCATGGAAAGAATGGC 59.308 45.455 25.97 0.00 0.00 4.40
6122 6811 4.021229 AGCAAATCTCATGCATGGAAAGA 58.979 39.130 25.97 20.70 46.22 2.52
6156 6845 3.445805 TGGCCGAAATAAGGATTGGAAAC 59.554 43.478 0.00 0.00 0.00 2.78
6165 6854 1.798813 GATACGCTGGCCGAAATAAGG 59.201 52.381 0.00 0.00 41.02 2.69
6176 6865 4.433186 TGGAAACAATTTGATACGCTGG 57.567 40.909 2.79 0.00 37.44 4.85
6199 6931 8.700973 ACCCAATGTAACCAATGTATATTTTCC 58.299 33.333 0.00 0.00 0.00 3.13
6214 6946 8.894731 ACCAAACAAAATTTAACCCAATGTAAC 58.105 29.630 0.00 0.00 0.00 2.50
6230 6962 7.251321 AGGCAATATCCATTACCAAACAAAA 57.749 32.000 0.00 0.00 30.76 2.44
6247 6979 3.042682 TCCTAAACCGATGGAGGCAATA 58.957 45.455 0.00 0.00 33.69 1.90
6253 7032 5.640732 CAAACAAATCCTAAACCGATGGAG 58.359 41.667 0.00 0.00 32.95 3.86
6262 7041 7.145323 GCTAACTGAAGCAAACAAATCCTAAA 58.855 34.615 0.00 0.00 42.30 1.85
6286 7065 2.345341 CGATGGAAGCAAAATTTTCGGC 59.655 45.455 0.00 2.74 0.00 5.54
6293 7072 2.689983 CCTAAGCCGATGGAAGCAAAAT 59.310 45.455 0.00 0.00 0.00 1.82
6331 7110 1.447317 AAGCGTTGGTCAGTTGGCTG 61.447 55.000 0.00 0.00 43.87 4.85
6338 7117 9.503675 ATCTAACTAGATCCAAGCGTTGGTCAG 62.504 44.444 13.95 10.19 41.82 3.51
6339 7118 7.810472 ATCTAACTAGATCCAAGCGTTGGTCA 61.810 42.308 13.95 0.40 41.82 4.02
6340 7119 5.452077 ATCTAACTAGATCCAAGCGTTGGTC 60.452 44.000 13.95 11.32 41.82 4.02
6341 7120 4.406003 ATCTAACTAGATCCAAGCGTTGGT 59.594 41.667 13.95 4.82 41.82 3.67
6342 7121 4.950050 ATCTAACTAGATCCAAGCGTTGG 58.050 43.478 0.00 9.65 38.64 3.77
6353 7132 8.283992 CGAGACACAAATACGATCTAACTAGAT 58.716 37.037 0.00 0.00 45.26 1.98
6354 7133 7.279536 ACGAGACACAAATACGATCTAACTAGA 59.720 37.037 0.00 0.00 36.65 2.43
6355 7134 7.373703 CACGAGACACAAATACGATCTAACTAG 59.626 40.741 0.00 0.00 0.00 2.57
6356 7135 7.148356 ACACGAGACACAAATACGATCTAACTA 60.148 37.037 0.00 0.00 0.00 2.24
6357 7136 6.028368 CACGAGACACAAATACGATCTAACT 58.972 40.000 0.00 0.00 0.00 2.24
6358 7137 5.798934 ACACGAGACACAAATACGATCTAAC 59.201 40.000 0.00 0.00 0.00 2.34
6359 7138 5.946298 ACACGAGACACAAATACGATCTAA 58.054 37.500 0.00 0.00 0.00 2.10
6360 7139 5.556355 ACACGAGACACAAATACGATCTA 57.444 39.130 0.00 0.00 0.00 1.98
6361 7140 4.436242 ACACGAGACACAAATACGATCT 57.564 40.909 0.00 0.00 0.00 2.75
6362 7141 4.201758 CGTACACGAGACACAAATACGATC 59.798 45.833 0.00 0.00 43.02 3.69
6363 7142 4.093514 CGTACACGAGACACAAATACGAT 58.906 43.478 0.00 0.00 43.02 3.73
6364 7143 3.481839 CGTACACGAGACACAAATACGA 58.518 45.455 0.00 0.00 43.02 3.43
6365 7144 2.026038 GCGTACACGAGACACAAATACG 59.974 50.000 5.84 0.00 43.02 3.06
6366 7145 2.981805 TGCGTACACGAGACACAAATAC 59.018 45.455 5.84 0.00 43.02 1.89
6367 7146 3.285816 TGCGTACACGAGACACAAATA 57.714 42.857 5.84 0.00 43.02 1.40
6368 7147 2.143008 TGCGTACACGAGACACAAAT 57.857 45.000 5.84 0.00 43.02 2.32
6369 7148 1.923899 TTGCGTACACGAGACACAAA 58.076 45.000 5.84 0.00 43.02 2.83
6370 7149 3.644774 TTGCGTACACGAGACACAA 57.355 47.368 5.84 0.00 43.02 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.