Multiple sequence alignment - TraesCS2A01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G274700 chr2A 100.000 4481 0 0 1 4481 450998218 450993738 0.000000e+00 8275.0
1 TraesCS2A01G274700 chr2A 82.804 535 73 13 1000 1524 451013650 451013125 1.140000e-125 460.0
2 TraesCS2A01G274700 chr2A 89.362 235 23 1 1 233 724339288 724339054 1.220000e-75 294.0
3 TraesCS2A01G274700 chr2A 92.105 190 15 0 2523 2712 451006154 451005965 7.390000e-68 268.0
4 TraesCS2A01G274700 chr2D 95.758 2428 88 10 2058 4480 340511798 340514215 0.000000e+00 3899.0
5 TraesCS2A01G274700 chr2D 94.608 1391 58 10 551 1930 340510421 340511805 0.000000e+00 2137.0
6 TraesCS2A01G274700 chr2D 82.243 535 76 11 1000 1524 340270360 340270885 1.140000e-120 444.0
7 TraesCS2A01G274700 chr2D 81.235 421 63 9 2495 2903 340271971 340272387 4.320000e-85 326.0
8 TraesCS2A01G274700 chr2D 89.744 234 18 2 244 477 340276775 340277002 1.220000e-75 294.0
9 TraesCS2A01G274700 chr2D 88.462 234 25 1 1 232 340279296 340279529 9.490000e-72 281.0
10 TraesCS2A01G274700 chr2D 88.745 231 24 1 1 229 619860064 619859834 9.490000e-72 281.0
11 TraesCS2A01G274700 chr2D 87.124 233 30 0 998 1230 430441971 430441739 9.560000e-67 265.0
12 TraesCS2A01G274700 chr2B 97.802 1592 28 5 2363 3952 406279984 406281570 0.000000e+00 2739.0
13 TraesCS2A01G274700 chr2B 94.724 815 26 4 805 1616 406277145 406277945 0.000000e+00 1251.0
14 TraesCS2A01G274700 chr2B 86.323 563 35 14 3940 4480 406401005 406401547 3.890000e-160 575.0
15 TraesCS2A01G274700 chr2B 98.208 279 5 0 2098 2376 406278228 406278506 5.210000e-134 488.0
16 TraesCS2A01G274700 chr2B 82.991 535 72 11 1000 1524 406098743 406099268 2.440000e-127 466.0
17 TraesCS2A01G274700 chr2B 96.364 275 7 3 1658 1930 406277948 406278221 2.460000e-122 449.0
18 TraesCS2A01G274700 chr2B 81.473 421 63 8 2495 2903 406115020 406115437 9.290000e-87 331.0
19 TraesCS2A01G274700 chr5D 87.978 366 42 2 3115 3479 542991278 542990914 8.900000e-117 431.0
20 TraesCS2A01G274700 chr5D 82.136 515 76 11 1014 1520 542992476 542991970 1.150000e-115 427.0
21 TraesCS2A01G274700 chr5B 82.239 518 74 13 1016 1523 684449050 684448541 8.900000e-117 431.0
22 TraesCS2A01G274700 chr5B 86.612 366 47 2 3115 3479 684447792 684447428 1.940000e-108 403.0
23 TraesCS2A01G274700 chr4A 88.333 360 40 2 3115 3473 626168241 626168599 8.900000e-117 431.0
24 TraesCS2A01G274700 chr4A 80.052 386 66 11 2522 2898 626166425 626166808 4.420000e-70 276.0
25 TraesCS2A01G274700 chr4A 89.401 217 23 0 1010 1226 626164947 626165163 1.590000e-69 274.0
26 TraesCS2A01G274700 chr4A 98.540 137 2 0 1920 2056 2037450 2037586 4.480000e-60 243.0
27 TraesCS2A01G274700 chr1D 89.610 231 22 1 1 229 346039188 346039418 4.380000e-75 292.0
28 TraesCS2A01G274700 chr1D 89.316 234 23 1 1 232 379461966 379462199 4.380000e-75 292.0
29 TraesCS2A01G274700 chr1D 88.841 233 24 1 1 231 450104006 450104238 7.340000e-73 285.0
30 TraesCS2A01G274700 chr1D 88.034 234 26 1 1 232 361208643 361208410 4.420000e-70 276.0
31 TraesCS2A01G274700 chr1D 87.983 233 26 1 1 231 41307051 41307283 1.590000e-69 274.0
32 TraesCS2A01G274700 chr1D 89.024 164 14 3 1603 1764 132857672 132857833 2.730000e-47 200.0
33 TraesCS2A01G274700 chr7B 88.696 230 24 1 1 228 605110215 605110444 3.410000e-71 279.0
34 TraesCS2A01G274700 chr7B 89.634 164 13 3 1601 1762 401532561 401532722 5.880000e-49 206.0
35 TraesCS2A01G274700 chr5A 100.000 132 0 0 1925 2056 6212947 6212816 1.250000e-60 244.0
36 TraesCS2A01G274700 chr5A 98.540 137 1 1 1921 2056 117507951 117508087 1.610000e-59 241.0
37 TraesCS2A01G274700 chr5A 89.024 164 15 3 1601 1762 569179317 569179155 2.730000e-47 200.0
38 TraesCS2A01G274700 chr3A 100.000 132 0 0 1925 2056 208067508 208067639 1.250000e-60 244.0
39 TraesCS2A01G274700 chr1B 99.259 135 1 0 1922 2056 348517582 348517716 1.250000e-60 244.0
40 TraesCS2A01G274700 chr1B 96.575 146 1 3 1911 2056 378408225 378408366 5.790000e-59 239.0
41 TraesCS2A01G274700 chr6B 97.842 139 3 0 1918 2056 101735775 101735913 1.610000e-59 241.0
42 TraesCS2A01G274700 chr6B 88.235 170 15 4 1595 1762 482473825 482473991 9.830000e-47 198.0
43 TraesCS2A01G274700 chr6B 80.702 114 20 2 1404 1516 176275118 176275230 2.220000e-13 87.9
44 TraesCS2A01G274700 chr3B 98.540 137 1 1 1921 2056 581706330 581706466 1.610000e-59 241.0
45 TraesCS2A01G274700 chr6A 94.231 156 7 2 1903 2056 363520087 363519932 2.080000e-58 237.0
46 TraesCS2A01G274700 chr6A 82.456 114 18 2 1404 1516 111536213 111536325 1.030000e-16 99.0
47 TraesCS2A01G274700 chr7A 88.506 174 16 3 1594 1765 494786997 494786826 1.630000e-49 207.0
48 TraesCS2A01G274700 chr3D 89.697 165 11 5 1601 1762 87926000 87926161 5.880000e-49 206.0
49 TraesCS2A01G274700 chr4D 88.235 170 15 3 1596 1762 421331239 421331072 9.830000e-47 198.0
50 TraesCS2A01G274700 chr6D 82.143 112 18 2 1404 1514 91842964 91843074 1.330000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G274700 chr2A 450993738 450998218 4480 True 8275.00 8275 100.000000 1 4481 1 chr2A.!!$R1 4480
1 TraesCS2A01G274700 chr2A 451013125 451013650 525 True 460.00 460 82.804000 1000 1524 1 chr2A.!!$R3 524
2 TraesCS2A01G274700 chr2D 340510421 340514215 3794 False 3018.00 3899 95.183000 551 4480 2 chr2D.!!$F3 3929
3 TraesCS2A01G274700 chr2D 340270360 340272387 2027 False 385.00 444 81.739000 1000 2903 2 chr2D.!!$F1 1903
4 TraesCS2A01G274700 chr2D 340276775 340279529 2754 False 287.50 294 89.103000 1 477 2 chr2D.!!$F2 476
5 TraesCS2A01G274700 chr2B 406277145 406281570 4425 False 1231.75 2739 96.774500 805 3952 4 chr2B.!!$F4 3147
6 TraesCS2A01G274700 chr2B 406401005 406401547 542 False 575.00 575 86.323000 3940 4480 1 chr2B.!!$F3 540
7 TraesCS2A01G274700 chr2B 406098743 406099268 525 False 466.00 466 82.991000 1000 1524 1 chr2B.!!$F1 524
8 TraesCS2A01G274700 chr5D 542990914 542992476 1562 True 429.00 431 85.057000 1014 3479 2 chr5D.!!$R1 2465
9 TraesCS2A01G274700 chr5B 684447428 684449050 1622 True 417.00 431 84.425500 1016 3479 2 chr5B.!!$R1 2463
10 TraesCS2A01G274700 chr4A 626164947 626168599 3652 False 327.00 431 85.928667 1010 3473 3 chr4A.!!$F2 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.040067 GGGCGGATGAAATTGATCGC 60.040 55.0 0.0 0.0 42.02 4.58 F
225 226 0.101219 GATCGCCCCATTGAAGTTGC 59.899 55.0 0.0 0.0 0.00 4.17 F
492 493 0.103208 GATGCTTGATCGGTCTCGGT 59.897 55.0 0.0 0.0 36.95 4.69 F
2021 3182 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.0 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 3163 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.0 0.0 37.28 3.67 R
2004 3165 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.0 0.0 0.00 5.24 R
2461 5113 1.133513 TGTGCAACTGGGGTTCTCAAT 60.134 47.619 0.0 0.0 38.04 2.57 R
3984 9046 1.228124 TTCCACCTTGAGTTGCCCG 60.228 57.895 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.166434 TTGGGTGGCCTACAGGTG 58.834 61.111 3.32 0.00 37.57 4.00
18 19 2.534396 TTGGGTGGCCTACAGGTGG 61.534 63.158 3.32 0.00 37.57 4.61
19 20 3.728373 GGGTGGCCTACAGGTGGG 61.728 72.222 3.32 0.00 37.57 4.61
20 21 3.728373 GGTGGCCTACAGGTGGGG 61.728 72.222 3.32 0.00 37.57 4.96
21 22 2.609610 GTGGCCTACAGGTGGGGA 60.610 66.667 3.32 0.00 37.57 4.81
22 23 2.609610 TGGCCTACAGGTGGGGAC 60.610 66.667 3.32 0.00 37.57 4.46
23 24 3.782443 GGCCTACAGGTGGGGACG 61.782 72.222 0.00 0.00 37.57 4.79
24 25 4.468689 GCCTACAGGTGGGGACGC 62.469 72.222 3.91 0.00 41.20 5.19
25 26 4.143333 CCTACAGGTGGGGACGCG 62.143 72.222 3.53 3.53 43.50 6.01
26 27 4.143333 CTACAGGTGGGGACGCGG 62.143 72.222 12.47 0.00 43.50 6.46
40 41 4.803426 GCGGCAGACGGTGAGGAG 62.803 72.222 0.00 0.00 44.51 3.69
41 42 3.062466 CGGCAGACGGTGAGGAGA 61.062 66.667 0.00 0.00 39.42 3.71
42 43 2.574399 GGCAGACGGTGAGGAGAC 59.426 66.667 0.00 0.00 0.00 3.36
43 44 2.179517 GCAGACGGTGAGGAGACG 59.820 66.667 0.00 0.00 0.00 4.18
44 45 2.179517 CAGACGGTGAGGAGACGC 59.820 66.667 0.00 0.00 0.00 5.19
45 46 3.432588 AGACGGTGAGGAGACGCG 61.433 66.667 3.53 3.53 0.00 6.01
92 93 4.917474 GCATTCCAGGCGCAATTT 57.083 50.000 10.83 0.00 0.00 1.82
93 94 3.142124 GCATTCCAGGCGCAATTTT 57.858 47.368 10.83 0.00 0.00 1.82
94 95 0.722848 GCATTCCAGGCGCAATTTTG 59.277 50.000 10.83 0.00 0.00 2.44
95 96 1.361793 CATTCCAGGCGCAATTTTGG 58.638 50.000 10.83 8.73 0.00 3.28
96 97 0.249955 ATTCCAGGCGCAATTTTGGG 59.750 50.000 10.83 3.21 43.22 4.12
103 104 3.603144 CGCAATTTTGGGCTGGAAA 57.397 47.368 0.00 0.00 34.31 3.13
104 105 2.097680 CGCAATTTTGGGCTGGAAAT 57.902 45.000 0.00 0.00 34.31 2.17
105 106 1.733360 CGCAATTTTGGGCTGGAAATG 59.267 47.619 0.00 0.00 34.31 2.32
106 107 2.086094 GCAATTTTGGGCTGGAAATGG 58.914 47.619 0.00 0.00 0.00 3.16
107 108 2.713877 CAATTTTGGGCTGGAAATGGG 58.286 47.619 0.00 0.00 0.00 4.00
108 109 2.040145 CAATTTTGGGCTGGAAATGGGT 59.960 45.455 0.00 0.00 0.00 4.51
109 110 1.347062 TTTTGGGCTGGAAATGGGTC 58.653 50.000 0.00 0.00 0.00 4.46
110 111 0.897863 TTTGGGCTGGAAATGGGTCG 60.898 55.000 0.00 0.00 0.00 4.79
111 112 2.440247 GGGCTGGAAATGGGTCGG 60.440 66.667 0.00 0.00 0.00 4.79
112 113 3.140814 GGCTGGAAATGGGTCGGC 61.141 66.667 0.00 0.00 0.00 5.54
113 114 3.508840 GCTGGAAATGGGTCGGCG 61.509 66.667 0.00 0.00 0.00 6.46
114 115 3.508840 CTGGAAATGGGTCGGCGC 61.509 66.667 0.00 0.00 0.00 6.53
115 116 4.337177 TGGAAATGGGTCGGCGCA 62.337 61.111 9.93 9.93 41.83 6.09
116 117 3.508840 GGAAATGGGTCGGCGCAG 61.509 66.667 13.61 5.07 40.92 5.18
117 118 2.435938 GAAATGGGTCGGCGCAGA 60.436 61.111 13.61 8.36 40.92 4.26
118 119 2.746277 AAATGGGTCGGCGCAGAC 60.746 61.111 29.27 29.27 40.92 3.51
130 131 4.008933 GCAGACGCCAGGTGGACT 62.009 66.667 4.64 0.41 37.39 3.85
131 132 2.262915 CAGACGCCAGGTGGACTC 59.737 66.667 4.64 0.00 37.39 3.36
132 133 3.374402 AGACGCCAGGTGGACTCG 61.374 66.667 4.64 0.00 37.39 4.18
133 134 3.371063 GACGCCAGGTGGACTCGA 61.371 66.667 4.64 0.00 37.39 4.04
134 135 2.680352 ACGCCAGGTGGACTCGAT 60.680 61.111 4.64 0.00 37.39 3.59
135 136 2.227089 GACGCCAGGTGGACTCGATT 62.227 60.000 4.64 0.00 37.39 3.34
136 137 1.079127 CGCCAGGTGGACTCGATTT 60.079 57.895 0.00 0.00 37.39 2.17
137 138 0.174845 CGCCAGGTGGACTCGATTTA 59.825 55.000 0.00 0.00 37.39 1.40
138 139 1.404986 CGCCAGGTGGACTCGATTTAA 60.405 52.381 0.00 0.00 37.39 1.52
139 140 2.280628 GCCAGGTGGACTCGATTTAAG 58.719 52.381 0.00 0.00 37.39 1.85
140 141 2.354805 GCCAGGTGGACTCGATTTAAGT 60.355 50.000 0.00 0.00 37.39 2.24
141 142 3.868754 GCCAGGTGGACTCGATTTAAGTT 60.869 47.826 0.00 0.00 37.39 2.66
142 143 4.324267 CCAGGTGGACTCGATTTAAGTTT 58.676 43.478 0.00 0.00 37.39 2.66
143 144 4.154195 CCAGGTGGACTCGATTTAAGTTTG 59.846 45.833 0.00 0.00 37.39 2.93
144 145 4.154195 CAGGTGGACTCGATTTAAGTTTGG 59.846 45.833 0.00 0.00 0.00 3.28
145 146 3.439129 GGTGGACTCGATTTAAGTTTGGG 59.561 47.826 0.00 0.00 0.00 4.12
146 147 4.070009 GTGGACTCGATTTAAGTTTGGGT 58.930 43.478 0.00 0.00 0.00 4.51
147 148 4.153655 GTGGACTCGATTTAAGTTTGGGTC 59.846 45.833 0.00 0.96 0.00 4.46
148 149 3.370061 GGACTCGATTTAAGTTTGGGTCG 59.630 47.826 0.00 0.00 0.00 4.79
149 150 3.332034 ACTCGATTTAAGTTTGGGTCGG 58.668 45.455 0.00 0.00 0.00 4.79
150 151 2.078392 TCGATTTAAGTTTGGGTCGGC 58.922 47.619 0.00 0.00 0.00 5.54
151 152 1.201987 CGATTTAAGTTTGGGTCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
152 153 0.524414 ATTTAAGTTTGGGTCGGCGC 59.476 50.000 0.00 0.00 0.00 6.53
153 154 0.818445 TTTAAGTTTGGGTCGGCGCA 60.818 50.000 10.83 1.19 35.68 6.09
154 155 0.606944 TTAAGTTTGGGTCGGCGCAT 60.607 50.000 7.88 0.00 37.40 4.73
155 156 0.606944 TAAGTTTGGGTCGGCGCATT 60.607 50.000 7.88 1.74 37.40 3.56
156 157 2.126502 GTTTGGGTCGGCGCATTG 60.127 61.111 7.88 0.00 37.40 2.82
157 158 3.369400 TTTGGGTCGGCGCATTGG 61.369 61.111 7.88 0.00 37.40 3.16
162 163 3.747976 GTCGGCGCATTGGGCTTT 61.748 61.111 22.88 0.00 41.33 3.51
163 164 3.439540 TCGGCGCATTGGGCTTTC 61.440 61.111 22.88 7.83 41.33 2.62
164 165 3.746889 CGGCGCATTGGGCTTTCA 61.747 61.111 22.88 0.00 41.33 2.69
165 166 2.656055 GGCGCATTGGGCTTTCAA 59.344 55.556 22.88 0.00 41.33 2.69
166 167 1.218854 GGCGCATTGGGCTTTCAAT 59.781 52.632 22.88 0.00 41.33 2.57
167 168 0.391528 GGCGCATTGGGCTTTCAATT 60.392 50.000 22.88 0.00 41.33 2.32
168 169 1.441738 GCGCATTGGGCTTTCAATTT 58.558 45.000 17.59 0.00 41.67 1.82
169 170 1.805943 GCGCATTGGGCTTTCAATTTT 59.194 42.857 17.59 0.00 41.67 1.82
170 171 2.413108 GCGCATTGGGCTTTCAATTTTG 60.413 45.455 17.59 0.00 41.67 2.44
171 172 2.807392 CGCATTGGGCTTTCAATTTTGT 59.193 40.909 0.00 0.00 41.67 2.83
172 173 3.120580 CGCATTGGGCTTTCAATTTTGTC 60.121 43.478 0.00 0.00 41.67 3.18
173 174 3.189080 GCATTGGGCTTTCAATTTTGTCC 59.811 43.478 0.00 0.00 40.25 4.02
174 175 2.810439 TGGGCTTTCAATTTTGTCCG 57.190 45.000 0.00 0.00 0.00 4.79
175 176 1.270041 TGGGCTTTCAATTTTGTCCGC 60.270 47.619 0.00 0.00 0.00 5.54
176 177 1.000843 GGGCTTTCAATTTTGTCCGCT 59.999 47.619 0.00 0.00 0.00 5.52
177 178 2.328473 GGCTTTCAATTTTGTCCGCTC 58.672 47.619 0.00 0.00 0.00 5.03
178 179 2.328473 GCTTTCAATTTTGTCCGCTCC 58.672 47.619 0.00 0.00 0.00 4.70
179 180 2.584791 CTTTCAATTTTGTCCGCTCCG 58.415 47.619 0.00 0.00 0.00 4.63
180 181 1.885560 TTCAATTTTGTCCGCTCCGA 58.114 45.000 0.00 0.00 0.00 4.55
181 182 1.153353 TCAATTTTGTCCGCTCCGAC 58.847 50.000 0.00 0.00 0.00 4.79
182 183 0.168128 CAATTTTGTCCGCTCCGACC 59.832 55.000 0.00 0.00 31.35 4.79
183 184 0.958876 AATTTTGTCCGCTCCGACCC 60.959 55.000 0.00 0.00 31.35 4.46
184 185 3.869473 TTTTGTCCGCTCCGACCCG 62.869 63.158 0.00 0.00 31.35 5.28
202 203 4.444838 CGGACACGGGCGGATGAA 62.445 66.667 0.00 0.00 36.18 2.57
203 204 2.046700 GGACACGGGCGGATGAAA 60.047 61.111 0.00 0.00 0.00 2.69
204 205 1.451387 GGACACGGGCGGATGAAAT 60.451 57.895 0.00 0.00 0.00 2.17
205 206 1.029947 GGACACGGGCGGATGAAATT 61.030 55.000 0.00 0.00 0.00 1.82
206 207 0.098728 GACACGGGCGGATGAAATTG 59.901 55.000 0.00 0.00 0.00 2.32
207 208 0.322098 ACACGGGCGGATGAAATTGA 60.322 50.000 0.00 0.00 0.00 2.57
208 209 1.024271 CACGGGCGGATGAAATTGAT 58.976 50.000 0.00 0.00 0.00 2.57
209 210 1.002468 CACGGGCGGATGAAATTGATC 60.002 52.381 0.00 0.00 0.00 2.92
210 211 0.235665 CGGGCGGATGAAATTGATCG 59.764 55.000 0.00 0.00 0.00 3.69
211 212 0.040067 GGGCGGATGAAATTGATCGC 60.040 55.000 0.00 0.00 42.02 4.58
212 213 3.461843 GCGGATGAAATTGATCGCC 57.538 52.632 0.00 0.00 37.62 5.54
213 214 0.040067 GCGGATGAAATTGATCGCCC 60.040 55.000 0.00 0.00 37.62 6.13
214 215 0.593128 CGGATGAAATTGATCGCCCC 59.407 55.000 0.00 0.00 0.00 5.80
215 216 1.691196 GGATGAAATTGATCGCCCCA 58.309 50.000 0.00 0.00 0.00 4.96
216 217 2.242043 GGATGAAATTGATCGCCCCAT 58.758 47.619 0.00 0.00 0.00 4.00
217 218 2.629617 GGATGAAATTGATCGCCCCATT 59.370 45.455 0.00 0.00 0.00 3.16
218 219 3.553508 GGATGAAATTGATCGCCCCATTG 60.554 47.826 0.00 0.00 0.00 2.82
219 220 2.732763 TGAAATTGATCGCCCCATTGA 58.267 42.857 0.00 0.00 0.00 2.57
220 221 3.095332 TGAAATTGATCGCCCCATTGAA 58.905 40.909 0.00 0.00 0.00 2.69
221 222 3.130869 TGAAATTGATCGCCCCATTGAAG 59.869 43.478 0.00 0.00 0.00 3.02
222 223 2.442236 ATTGATCGCCCCATTGAAGT 57.558 45.000 0.00 0.00 0.00 3.01
223 224 2.214376 TTGATCGCCCCATTGAAGTT 57.786 45.000 0.00 0.00 0.00 2.66
224 225 1.462616 TGATCGCCCCATTGAAGTTG 58.537 50.000 0.00 0.00 0.00 3.16
225 226 0.101219 GATCGCCCCATTGAAGTTGC 59.899 55.000 0.00 0.00 0.00 4.17
226 227 0.323725 ATCGCCCCATTGAAGTTGCT 60.324 50.000 0.00 0.00 0.00 3.91
227 228 0.960364 TCGCCCCATTGAAGTTGCTC 60.960 55.000 0.00 0.00 0.00 4.26
228 229 0.962356 CGCCCCATTGAAGTTGCTCT 60.962 55.000 0.00 0.00 0.00 4.09
229 230 1.260544 GCCCCATTGAAGTTGCTCTT 58.739 50.000 0.00 0.00 39.32 2.85
230 231 2.446435 GCCCCATTGAAGTTGCTCTTA 58.554 47.619 0.00 0.00 36.40 2.10
231 232 2.424956 GCCCCATTGAAGTTGCTCTTAG 59.575 50.000 0.00 0.00 36.40 2.18
232 233 3.873801 GCCCCATTGAAGTTGCTCTTAGA 60.874 47.826 0.00 0.00 36.40 2.10
233 234 4.530875 CCCCATTGAAGTTGCTCTTAGAT 58.469 43.478 0.00 0.00 36.40 1.98
234 235 4.578105 CCCCATTGAAGTTGCTCTTAGATC 59.422 45.833 0.00 0.00 36.40 2.75
235 236 5.188434 CCCATTGAAGTTGCTCTTAGATCA 58.812 41.667 0.00 0.00 36.40 2.92
236 237 5.065731 CCCATTGAAGTTGCTCTTAGATCAC 59.934 44.000 0.00 0.00 36.40 3.06
237 238 5.879223 CCATTGAAGTTGCTCTTAGATCACT 59.121 40.000 0.00 0.00 36.40 3.41
238 239 7.044181 CCATTGAAGTTGCTCTTAGATCACTA 58.956 38.462 0.00 0.00 36.40 2.74
239 240 7.010923 CCATTGAAGTTGCTCTTAGATCACTAC 59.989 40.741 0.00 0.00 36.40 2.73
240 241 6.842437 TGAAGTTGCTCTTAGATCACTACT 57.158 37.500 0.00 0.00 36.40 2.57
241 242 7.233389 TGAAGTTGCTCTTAGATCACTACTT 57.767 36.000 3.67 3.67 36.40 2.24
242 243 8.349568 TGAAGTTGCTCTTAGATCACTACTTA 57.650 34.615 3.94 0.00 36.40 2.24
243 244 8.972127 TGAAGTTGCTCTTAGATCACTACTTAT 58.028 33.333 3.94 0.00 36.40 1.73
274 275 6.645790 TTTACGGAGAGAGTACTTCTTGTT 57.354 37.500 0.00 0.00 35.87 2.83
275 276 6.645790 TTACGGAGAGAGTACTTCTTGTTT 57.354 37.500 0.00 0.00 35.87 2.83
293 294 8.025243 TCTTGTTTACGTTTATCATCTTGACC 57.975 34.615 0.00 0.00 0.00 4.02
307 308 0.613260 TTGACCGGAGAATCACCCTG 59.387 55.000 9.46 0.00 36.25 4.45
310 311 0.326618 ACCGGAGAATCACCCTGGAT 60.327 55.000 9.46 0.00 36.25 3.41
340 341 2.040544 CGTGCATCAACCCCTCACC 61.041 63.158 0.00 0.00 0.00 4.02
358 359 2.359967 CCCCTCCCTCGACCACTTC 61.360 68.421 0.00 0.00 0.00 3.01
379 380 2.843401 AGTGTGGTGGCAACGTATTA 57.157 45.000 0.00 0.00 42.51 0.98
388 389 2.680841 TGGCAACGTATTATGCAACCTC 59.319 45.455 11.72 0.00 44.32 3.85
389 390 2.943033 GGCAACGTATTATGCAACCTCT 59.057 45.455 11.72 0.00 44.32 3.69
405 406 0.809241 CTCTCTCCATCAACAGCGGC 60.809 60.000 0.00 0.00 0.00 6.53
430 431 3.065510 TGGCGACTCTATTCTCTTCTTCG 59.934 47.826 0.00 0.00 0.00 3.79
444 445 2.027625 CTTCGGTGAAGGCGGTGTC 61.028 63.158 0.00 0.00 36.16 3.67
450 451 2.156098 GGTGAAGGCGGTGTCAATAAA 58.844 47.619 0.00 0.00 0.00 1.40
453 454 4.396790 GGTGAAGGCGGTGTCAATAAATAA 59.603 41.667 0.00 0.00 0.00 1.40
454 455 5.106078 GGTGAAGGCGGTGTCAATAAATAAA 60.106 40.000 0.00 0.00 0.00 1.40
455 456 6.405397 GGTGAAGGCGGTGTCAATAAATAAAT 60.405 38.462 0.00 0.00 0.00 1.40
456 457 6.472163 GTGAAGGCGGTGTCAATAAATAAATG 59.528 38.462 0.00 0.00 0.00 2.32
477 478 3.221964 CAGCCAAAAACACTAGGATGC 57.778 47.619 0.00 0.00 30.14 3.91
478 479 2.821969 CAGCCAAAAACACTAGGATGCT 59.178 45.455 0.00 0.00 30.14 3.79
480 481 3.256631 AGCCAAAAACACTAGGATGCTTG 59.743 43.478 0.00 0.00 0.00 4.01
481 482 3.255642 GCCAAAAACACTAGGATGCTTGA 59.744 43.478 2.19 0.00 0.00 3.02
482 483 4.082026 GCCAAAAACACTAGGATGCTTGAT 60.082 41.667 2.19 0.00 0.00 2.57
484 485 5.327091 CAAAAACACTAGGATGCTTGATCG 58.673 41.667 2.19 0.00 30.87 3.69
486 487 2.111384 ACACTAGGATGCTTGATCGGT 58.889 47.619 2.19 0.00 30.87 4.69
487 488 2.101582 ACACTAGGATGCTTGATCGGTC 59.898 50.000 2.19 0.00 30.87 4.79
488 489 2.363680 CACTAGGATGCTTGATCGGTCT 59.636 50.000 2.19 0.00 30.87 3.85
490 491 0.387202 AGGATGCTTGATCGGTCTCG 59.613 55.000 0.00 0.00 37.82 4.04
491 492 0.598680 GGATGCTTGATCGGTCTCGG 60.599 60.000 0.00 0.00 36.95 4.63
492 493 0.103208 GATGCTTGATCGGTCTCGGT 59.897 55.000 0.00 0.00 36.95 4.69
495 496 0.389948 GCTTGATCGGTCTCGGTTGT 60.390 55.000 0.00 0.00 36.95 3.32
496 497 1.939838 GCTTGATCGGTCTCGGTTGTT 60.940 52.381 0.00 0.00 36.95 2.83
497 498 2.413837 CTTGATCGGTCTCGGTTGTTT 58.586 47.619 0.00 0.00 36.95 2.83
498 499 3.581755 CTTGATCGGTCTCGGTTGTTTA 58.418 45.455 0.00 0.00 36.95 2.01
500 501 2.094390 TGATCGGTCTCGGTTGTTTAGG 60.094 50.000 0.00 0.00 36.95 2.69
503 504 1.271656 CGGTCTCGGTTGTTTAGGACT 59.728 52.381 0.00 0.00 0.00 3.85
504 505 2.288640 CGGTCTCGGTTGTTTAGGACTT 60.289 50.000 0.00 0.00 0.00 3.01
505 506 3.064931 GGTCTCGGTTGTTTAGGACTTG 58.935 50.000 0.00 0.00 0.00 3.16
506 507 3.493873 GGTCTCGGTTGTTTAGGACTTGT 60.494 47.826 0.00 0.00 0.00 3.16
507 508 3.493503 GTCTCGGTTGTTTAGGACTTGTG 59.506 47.826 0.00 0.00 0.00 3.33
508 509 2.806244 CTCGGTTGTTTAGGACTTGTGG 59.194 50.000 0.00 0.00 0.00 4.17
509 510 2.435069 TCGGTTGTTTAGGACTTGTGGA 59.565 45.455 0.00 0.00 0.00 4.02
511 512 3.743269 CGGTTGTTTAGGACTTGTGGACT 60.743 47.826 0.00 0.00 0.00 3.85
512 513 4.204799 GGTTGTTTAGGACTTGTGGACTT 58.795 43.478 0.00 0.00 0.00 3.01
514 515 4.497291 TGTTTAGGACTTGTGGACTTGT 57.503 40.909 0.00 0.00 0.00 3.16
515 516 4.196193 TGTTTAGGACTTGTGGACTTGTG 58.804 43.478 0.00 0.00 0.00 3.33
516 517 3.485463 TTAGGACTTGTGGACTTGTGG 57.515 47.619 0.00 0.00 0.00 4.17
517 518 1.507140 AGGACTTGTGGACTTGTGGA 58.493 50.000 0.00 0.00 0.00 4.02
519 520 1.141053 GGACTTGTGGACTTGTGGAGT 59.859 52.381 0.00 0.00 42.70 3.85
521 522 3.555168 GGACTTGTGGACTTGTGGAGTAG 60.555 52.174 0.00 0.00 39.19 2.57
522 523 3.305720 ACTTGTGGACTTGTGGAGTAGA 58.694 45.455 0.00 0.00 39.19 2.59
523 524 3.904339 ACTTGTGGACTTGTGGAGTAGAT 59.096 43.478 0.00 0.00 39.19 1.98
526 527 2.093447 GTGGACTTGTGGAGTAGATGGG 60.093 54.545 0.00 0.00 39.19 4.00
530 531 3.375699 ACTTGTGGAGTAGATGGGTAGG 58.624 50.000 0.00 0.00 36.65 3.18
531 532 1.789523 TGTGGAGTAGATGGGTAGGC 58.210 55.000 0.00 0.00 0.00 3.93
532 533 0.674534 GTGGAGTAGATGGGTAGGCG 59.325 60.000 0.00 0.00 0.00 5.52
533 534 1.113517 TGGAGTAGATGGGTAGGCGC 61.114 60.000 0.00 0.00 0.00 6.53
534 535 1.286260 GAGTAGATGGGTAGGCGCG 59.714 63.158 0.00 0.00 0.00 6.86
535 536 2.355956 GTAGATGGGTAGGCGCGC 60.356 66.667 25.94 25.94 0.00 6.86
538 539 1.682451 TAGATGGGTAGGCGCGCTTT 61.682 55.000 32.29 21.51 0.00 3.51
571 572 3.507622 ACTTTTGCTATTCCCAGTCAAGC 59.492 43.478 0.00 0.00 0.00 4.01
581 582 6.670695 ATTCCCAGTCAAGCTGTTATTTTT 57.329 33.333 0.00 0.00 43.55 1.94
612 613 6.091718 ACTTAACGTAATTTTTGTGGCCAT 57.908 33.333 9.72 0.00 0.00 4.40
628 629 7.041635 TGTGGCCATGAATATGAATTTGTAG 57.958 36.000 9.72 0.00 36.36 2.74
638 639 8.547894 TGAATATGAATTTGTAGGACGATTTCG 58.452 33.333 0.00 0.00 46.33 3.46
690 691 2.435059 GAAGGACGTGCCAGGAGC 60.435 66.667 2.38 0.00 44.14 4.70
691 692 3.959991 GAAGGACGTGCCAGGAGCC 62.960 68.421 2.38 0.00 42.71 4.70
694 695 4.767255 GACGTGCCAGGAGCCCAG 62.767 72.222 0.00 0.00 42.71 4.45
704 1062 3.787001 GAGCCCAGGAGAACCCGG 61.787 72.222 0.00 0.00 40.87 5.73
744 1114 4.800993 CACGTGATGAGGTCTACTTCATTC 59.199 45.833 10.90 5.59 41.85 2.67
819 1189 1.346722 TCCCTTCTGAACGGAAACTCC 59.653 52.381 5.77 0.00 0.00 3.85
877 1247 3.329889 TTCCCGCCAGCCTCACAT 61.330 61.111 0.00 0.00 0.00 3.21
1142 1650 3.333189 CATGGTCGCGCTCATCCG 61.333 66.667 5.56 0.00 0.00 4.18
1212 2346 3.027170 GCCGCACACCAACGAGATG 62.027 63.158 0.00 0.00 0.00 2.90
1606 2763 8.204836 CCACATACTAGCTAAACAATTACTCCT 58.795 37.037 0.00 0.00 0.00 3.69
1667 2824 3.676172 TGAACTACGTACGGAGCAAAATG 59.324 43.478 27.33 3.03 0.00 2.32
1669 2826 2.231964 ACTACGTACGGAGCAAAATGGA 59.768 45.455 27.33 0.00 0.00 3.41
1730 2887 8.933653 TGTATGTGGTCCATATTGAAATCTCTA 58.066 33.333 6.41 0.00 38.29 2.43
1923 3084 6.738114 TCAAAATGTTTAGCTGAAAGACAGG 58.262 36.000 0.00 0.00 45.82 4.00
1924 3085 6.545666 TCAAAATGTTTAGCTGAAAGACAGGA 59.454 34.615 0.00 0.00 45.82 3.86
1925 3086 7.231317 TCAAAATGTTTAGCTGAAAGACAGGAT 59.769 33.333 0.00 0.00 45.82 3.24
1926 3087 7.530426 AAATGTTTAGCTGAAAGACAGGATT 57.470 32.000 0.00 0.00 45.82 3.01
1927 3088 8.635765 AAATGTTTAGCTGAAAGACAGGATTA 57.364 30.769 0.00 0.00 45.82 1.75
1928 3089 8.635765 AATGTTTAGCTGAAAGACAGGATTAA 57.364 30.769 0.00 0.00 45.82 1.40
1929 3090 8.635765 ATGTTTAGCTGAAAGACAGGATTAAA 57.364 30.769 0.00 0.00 45.82 1.52
1930 3091 8.458573 TGTTTAGCTGAAAGACAGGATTAAAA 57.541 30.769 0.00 0.00 45.82 1.52
1931 3092 8.908903 TGTTTAGCTGAAAGACAGGATTAAAAA 58.091 29.630 0.00 0.00 45.82 1.94
1932 3093 9.399403 GTTTAGCTGAAAGACAGGATTAAAAAG 57.601 33.333 0.00 0.00 45.82 2.27
1933 3094 6.581171 AGCTGAAAGACAGGATTAAAAAGG 57.419 37.500 0.00 0.00 45.82 3.11
1934 3095 5.478332 AGCTGAAAGACAGGATTAAAAAGGG 59.522 40.000 0.00 0.00 45.82 3.95
1935 3096 5.714047 CTGAAAGACAGGATTAAAAAGGGC 58.286 41.667 0.00 0.00 42.39 5.19
1936 3097 5.144100 TGAAAGACAGGATTAAAAAGGGCA 58.856 37.500 0.00 0.00 0.00 5.36
1937 3098 5.600484 TGAAAGACAGGATTAAAAAGGGCAA 59.400 36.000 0.00 0.00 0.00 4.52
1938 3099 5.468540 AAGACAGGATTAAAAAGGGCAAC 57.531 39.130 0.00 0.00 0.00 4.17
1950 3111 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1951 3112 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1952 3113 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1953 3114 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1954 3115 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1960 3121 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1961 3122 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1962 3123 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1963 3124 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1966 3127 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1978 3139 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1979 3140 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1980 3141 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1981 3142 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1982 3143 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1983 3144 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1984 3145 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1985 3146 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1986 3147 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1987 3148 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1988 3149 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1989 3150 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1990 3151 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1991 3152 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1992 3153 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1993 3154 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1994 3155 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1995 3156 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1996 3157 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2006 3167 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2007 3168 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2008 3169 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2009 3170 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2010 3171 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2011 3172 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2012 3173 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2013 3174 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2014 3175 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2015 3176 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2016 3177 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2017 3178 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2018 3179 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2019 3180 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2020 3181 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2021 3182 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2022 3183 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2023 3184 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2024 3185 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2025 3186 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2026 3187 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2027 3188 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2028 3189 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2029 3190 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2030 3191 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2031 3192 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2032 3193 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2044 3205 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2045 3206 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2046 3207 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2047 3208 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2048 3209 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2049 3210 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2050 3211 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2051 3212 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2052 3213 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2053 3214 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2054 3215 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2055 3216 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2056 3217 1.850345 TGTTTCCAGGACTTGAACCCT 59.150 47.619 0.00 0.00 0.00 4.34
2087 3248 4.401925 CTTTCCCCAAAGTTCATCTCACT 58.598 43.478 0.00 0.00 35.20 3.41
2166 3327 8.812972 AGTTCAAAATAGTACTACACTCCATCA 58.187 33.333 4.31 0.00 38.80 3.07
2233 3394 4.141287 TGAACTTCACCCAAACGATTCAT 58.859 39.130 0.00 0.00 0.00 2.57
2356 3517 8.077836 CTGTAAGTAATGATACCTTTAGCAGC 57.922 38.462 0.00 0.00 32.08 5.25
2461 5113 2.104792 AGCTTGCTAGATTGGCGGAATA 59.895 45.455 0.00 0.00 0.00 1.75
2936 6694 7.698130 GCTATGTAGACTTTGCTATTTTTGGTG 59.302 37.037 0.00 0.00 0.00 4.17
3338 8399 3.287867 CCAGAATGTGGGAGCACTATT 57.712 47.619 0.00 0.00 43.63 1.73
3366 8427 0.252421 TCACACCAGAGGAGATGGCT 60.252 55.000 0.00 0.00 41.87 4.75
3385 8447 1.751351 CTGAACTCGAGTCCTATGCCA 59.249 52.381 20.33 7.49 0.00 4.92
3476 8538 3.508762 CATTGTCATCCTTGAAAGCTGC 58.491 45.455 0.00 0.00 32.48 5.25
3556 8618 7.176690 AGGAGGGTAATCATAGTTGTGTTTTTG 59.823 37.037 0.00 0.00 0.00 2.44
3976 9038 3.999663 AGGATGAGCTTTTTCGAGTTCAG 59.000 43.478 0.00 0.00 39.68 3.02
3984 9046 1.878953 TTTCGAGTTCAGACAAGGGC 58.121 50.000 0.00 0.00 0.00 5.19
4089 9151 1.375013 CGGTGTACCCCGGAGTTTG 60.375 63.158 9.13 0.00 44.32 2.93
4126 9188 2.040464 GGGCTCCCCTGAGATCCA 60.040 66.667 0.00 0.00 41.42 3.41
4182 9244 1.473257 GGCGAGCCAACAGATATCACA 60.473 52.381 9.58 0.00 35.81 3.58
4245 9307 1.980765 GGAGATGCCATGGATACCTCA 59.019 52.381 18.40 2.37 36.34 3.86
4256 9318 2.326428 GGATACCTCAAAGATCCCGGA 58.674 52.381 0.73 0.00 0.00 5.14
4259 9321 1.657804 ACCTCAAAGATCCCGGAGTT 58.342 50.000 0.73 0.00 0.00 3.01
4285 9347 1.386057 AGGGAGCCATAGGAACCCC 60.386 63.158 12.19 0.00 39.24 4.95
4293 9355 0.977395 CATAGGAACCCCGGAGATCC 59.023 60.000 0.73 2.58 37.58 3.36
4301 9363 4.227134 CCGGAGATCCAGGGCACG 62.227 72.222 0.00 0.00 35.14 5.34
4341 9790 0.764752 ATGGGACCCCGAAGAGATCC 60.765 60.000 8.45 0.00 39.42 3.36
4345 9794 0.535797 GACCCCGAAGAGATCCGTTT 59.464 55.000 0.00 0.00 0.00 3.60
4371 9820 1.636003 GAGAGGAAACCATTGGACCCT 59.364 52.381 10.37 11.80 0.00 4.34
4409 9929 6.763135 GCACTAGAAGGATGTGTATTTGATGA 59.237 38.462 0.00 0.00 34.52 2.92
4414 9934 8.641498 AGAAGGATGTGTATTTGATGAAACTT 57.359 30.769 0.00 0.00 0.00 2.66
4480 10000 7.800380 GTGAGTGTATGAATTGAAGTGAACTTG 59.200 37.037 0.00 0.00 36.11 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.933287 CCACCTGTAGGCCACCCA 60.933 66.667 5.01 0.00 39.32 4.51
2 3 3.728373 CCCACCTGTAGGCCACCC 61.728 72.222 5.01 0.00 39.32 4.61
3 4 3.728373 CCCCACCTGTAGGCCACC 61.728 72.222 5.01 0.00 39.32 4.61
4 5 2.609610 TCCCCACCTGTAGGCCAC 60.610 66.667 5.01 1.31 39.32 5.01
5 6 2.609610 GTCCCCACCTGTAGGCCA 60.610 66.667 5.01 0.00 39.32 5.36
6 7 3.782443 CGTCCCCACCTGTAGGCC 61.782 72.222 0.00 0.00 39.32 5.19
7 8 4.468689 GCGTCCCCACCTGTAGGC 62.469 72.222 0.00 0.00 39.32 3.93
8 9 4.143333 CGCGTCCCCACCTGTAGG 62.143 72.222 0.00 0.00 42.17 3.18
9 10 4.143333 CCGCGTCCCCACCTGTAG 62.143 72.222 4.92 0.00 0.00 2.74
23 24 4.803426 CTCCTCACCGTCTGCCGC 62.803 72.222 0.00 0.00 34.38 6.53
24 25 3.062466 TCTCCTCACCGTCTGCCG 61.062 66.667 0.00 0.00 0.00 5.69
25 26 2.574399 GTCTCCTCACCGTCTGCC 59.426 66.667 0.00 0.00 0.00 4.85
26 27 2.179517 CGTCTCCTCACCGTCTGC 59.820 66.667 0.00 0.00 0.00 4.26
27 28 2.179517 GCGTCTCCTCACCGTCTG 59.820 66.667 0.00 0.00 0.00 3.51
28 29 3.432588 CGCGTCTCCTCACCGTCT 61.433 66.667 0.00 0.00 0.00 4.18
75 76 0.722848 CAAAATTGCGCCTGGAATGC 59.277 50.000 4.18 0.00 36.15 3.56
76 77 1.361793 CCAAAATTGCGCCTGGAATG 58.638 50.000 4.18 0.00 36.15 2.67
77 78 0.249955 CCCAAAATTGCGCCTGGAAT 59.750 50.000 4.18 0.00 37.81 3.01
78 79 1.670590 CCCAAAATTGCGCCTGGAA 59.329 52.632 4.18 0.00 0.00 3.53
79 80 2.941616 GCCCAAAATTGCGCCTGGA 61.942 57.895 4.18 0.00 0.00 3.86
80 81 2.434709 GCCCAAAATTGCGCCTGG 60.435 61.111 4.18 3.67 0.00 4.45
81 82 1.738830 CAGCCCAAAATTGCGCCTG 60.739 57.895 4.18 0.00 32.57 4.85
82 83 2.658422 CAGCCCAAAATTGCGCCT 59.342 55.556 4.18 0.00 32.57 5.52
83 84 2.434709 CCAGCCCAAAATTGCGCC 60.435 61.111 4.18 0.00 32.57 6.53
84 85 0.602372 TTTCCAGCCCAAAATTGCGC 60.602 50.000 0.00 0.00 32.33 6.09
85 86 1.733360 CATTTCCAGCCCAAAATTGCG 59.267 47.619 0.00 0.00 0.00 4.85
86 87 2.086094 CCATTTCCAGCCCAAAATTGC 58.914 47.619 0.00 0.00 0.00 3.56
87 88 2.040145 ACCCATTTCCAGCCCAAAATTG 59.960 45.455 0.00 0.00 0.00 2.32
88 89 2.305635 GACCCATTTCCAGCCCAAAATT 59.694 45.455 0.00 0.00 0.00 1.82
89 90 1.908619 GACCCATTTCCAGCCCAAAAT 59.091 47.619 0.00 0.00 0.00 1.82
90 91 1.347062 GACCCATTTCCAGCCCAAAA 58.653 50.000 0.00 0.00 0.00 2.44
91 92 0.897863 CGACCCATTTCCAGCCCAAA 60.898 55.000 0.00 0.00 0.00 3.28
92 93 1.304052 CGACCCATTTCCAGCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
93 94 2.354729 CGACCCATTTCCAGCCCA 59.645 61.111 0.00 0.00 0.00 5.36
94 95 2.440247 CCGACCCATTTCCAGCCC 60.440 66.667 0.00 0.00 0.00 5.19
95 96 3.140814 GCCGACCCATTTCCAGCC 61.141 66.667 0.00 0.00 0.00 4.85
96 97 3.508840 CGCCGACCCATTTCCAGC 61.509 66.667 0.00 0.00 0.00 4.85
97 98 3.508840 GCGCCGACCCATTTCCAG 61.509 66.667 0.00 0.00 0.00 3.86
98 99 4.337177 TGCGCCGACCCATTTCCA 62.337 61.111 4.18 0.00 0.00 3.53
99 100 3.508840 CTGCGCCGACCCATTTCC 61.509 66.667 4.18 0.00 0.00 3.13
100 101 2.435938 TCTGCGCCGACCCATTTC 60.436 61.111 4.18 0.00 0.00 2.17
101 102 2.746277 GTCTGCGCCGACCCATTT 60.746 61.111 19.96 0.00 0.00 2.32
113 114 3.941657 GAGTCCACCTGGCGTCTGC 62.942 68.421 0.00 0.00 41.71 4.26
114 115 2.262915 GAGTCCACCTGGCGTCTG 59.737 66.667 0.00 0.00 34.44 3.51
115 116 3.374402 CGAGTCCACCTGGCGTCT 61.374 66.667 0.00 0.00 34.44 4.18
116 117 2.227089 AATCGAGTCCACCTGGCGTC 62.227 60.000 0.00 0.00 34.44 5.19
117 118 1.827399 AAATCGAGTCCACCTGGCGT 61.827 55.000 0.00 0.00 34.44 5.68
118 119 0.174845 TAAATCGAGTCCACCTGGCG 59.825 55.000 0.00 0.00 34.44 5.69
119 120 2.280628 CTTAAATCGAGTCCACCTGGC 58.719 52.381 0.00 0.00 34.44 4.85
120 121 3.611766 ACTTAAATCGAGTCCACCTGG 57.388 47.619 0.00 0.00 0.00 4.45
121 122 4.154195 CCAAACTTAAATCGAGTCCACCTG 59.846 45.833 0.00 0.00 0.00 4.00
122 123 4.324267 CCAAACTTAAATCGAGTCCACCT 58.676 43.478 0.00 0.00 0.00 4.00
123 124 3.439129 CCCAAACTTAAATCGAGTCCACC 59.561 47.826 0.00 0.00 0.00 4.61
124 125 4.070009 ACCCAAACTTAAATCGAGTCCAC 58.930 43.478 0.00 0.00 0.00 4.02
125 126 4.320870 GACCCAAACTTAAATCGAGTCCA 58.679 43.478 0.00 0.00 0.00 4.02
126 127 3.370061 CGACCCAAACTTAAATCGAGTCC 59.630 47.826 0.00 0.00 0.00 3.85
127 128 3.370061 CCGACCCAAACTTAAATCGAGTC 59.630 47.826 0.00 0.00 0.00 3.36
128 129 3.332034 CCGACCCAAACTTAAATCGAGT 58.668 45.455 0.00 0.00 0.00 4.18
129 130 2.095372 GCCGACCCAAACTTAAATCGAG 59.905 50.000 0.00 0.00 0.00 4.04
130 131 2.078392 GCCGACCCAAACTTAAATCGA 58.922 47.619 0.00 0.00 0.00 3.59
131 132 1.201987 CGCCGACCCAAACTTAAATCG 60.202 52.381 0.00 0.00 0.00 3.34
132 133 1.466866 GCGCCGACCCAAACTTAAATC 60.467 52.381 0.00 0.00 0.00 2.17
133 134 0.524414 GCGCCGACCCAAACTTAAAT 59.476 50.000 0.00 0.00 0.00 1.40
134 135 0.818445 TGCGCCGACCCAAACTTAAA 60.818 50.000 4.18 0.00 0.00 1.52
135 136 0.606944 ATGCGCCGACCCAAACTTAA 60.607 50.000 4.18 0.00 0.00 1.85
136 137 0.606944 AATGCGCCGACCCAAACTTA 60.607 50.000 4.18 0.00 0.00 2.24
137 138 1.901464 AATGCGCCGACCCAAACTT 60.901 52.632 4.18 0.00 0.00 2.66
138 139 2.282180 AATGCGCCGACCCAAACT 60.282 55.556 4.18 0.00 0.00 2.66
139 140 2.126502 CAATGCGCCGACCCAAAC 60.127 61.111 4.18 0.00 0.00 2.93
140 141 3.369400 CCAATGCGCCGACCCAAA 61.369 61.111 4.18 0.00 0.00 3.28
151 152 3.189080 GGACAAAATTGAAAGCCCAATGC 59.811 43.478 0.00 0.00 36.90 3.56
152 153 3.432933 CGGACAAAATTGAAAGCCCAATG 59.567 43.478 0.00 0.00 36.90 2.82
153 154 3.663025 CGGACAAAATTGAAAGCCCAAT 58.337 40.909 0.00 0.00 38.30 3.16
154 155 2.804933 GCGGACAAAATTGAAAGCCCAA 60.805 45.455 0.00 0.00 0.00 4.12
155 156 1.270041 GCGGACAAAATTGAAAGCCCA 60.270 47.619 0.00 0.00 0.00 5.36
156 157 1.000843 AGCGGACAAAATTGAAAGCCC 59.999 47.619 0.00 0.00 0.00 5.19
157 158 2.328473 GAGCGGACAAAATTGAAAGCC 58.672 47.619 0.00 0.00 0.00 4.35
158 159 2.328473 GGAGCGGACAAAATTGAAAGC 58.672 47.619 0.00 2.39 0.00 3.51
159 160 2.225491 TCGGAGCGGACAAAATTGAAAG 59.775 45.455 0.00 0.00 0.00 2.62
160 161 2.031508 GTCGGAGCGGACAAAATTGAAA 60.032 45.455 0.00 0.00 36.91 2.69
161 162 1.533731 GTCGGAGCGGACAAAATTGAA 59.466 47.619 0.00 0.00 36.91 2.69
162 163 1.153353 GTCGGAGCGGACAAAATTGA 58.847 50.000 0.00 0.00 36.91 2.57
163 164 0.168128 GGTCGGAGCGGACAAAATTG 59.832 55.000 9.84 0.00 38.70 2.32
164 165 0.958876 GGGTCGGAGCGGACAAAATT 60.959 55.000 9.84 0.00 38.70 1.82
165 166 1.376812 GGGTCGGAGCGGACAAAAT 60.377 57.895 9.84 0.00 38.70 1.82
166 167 2.031465 GGGTCGGAGCGGACAAAA 59.969 61.111 9.84 0.00 38.70 2.44
167 168 4.367023 CGGGTCGGAGCGGACAAA 62.367 66.667 8.87 0.00 38.70 2.83
185 186 3.943479 TTTCATCCGCCCGTGTCCG 62.943 63.158 0.00 0.00 0.00 4.79
186 187 1.029947 AATTTCATCCGCCCGTGTCC 61.030 55.000 0.00 0.00 0.00 4.02
187 188 0.098728 CAATTTCATCCGCCCGTGTC 59.901 55.000 0.00 0.00 0.00 3.67
188 189 0.322098 TCAATTTCATCCGCCCGTGT 60.322 50.000 0.00 0.00 0.00 4.49
189 190 1.002468 GATCAATTTCATCCGCCCGTG 60.002 52.381 0.00 0.00 0.00 4.94
190 191 1.308998 GATCAATTTCATCCGCCCGT 58.691 50.000 0.00 0.00 0.00 5.28
191 192 0.235665 CGATCAATTTCATCCGCCCG 59.764 55.000 0.00 0.00 0.00 6.13
192 193 0.040067 GCGATCAATTTCATCCGCCC 60.040 55.000 0.00 0.00 0.00 6.13
193 194 0.040067 GGCGATCAATTTCATCCGCC 60.040 55.000 7.84 7.84 34.82 6.13
194 195 0.040067 GGGCGATCAATTTCATCCGC 60.040 55.000 0.00 0.00 0.00 5.54
195 196 0.593128 GGGGCGATCAATTTCATCCG 59.407 55.000 0.00 0.00 0.00 4.18
196 197 1.691196 TGGGGCGATCAATTTCATCC 58.309 50.000 0.00 0.00 0.00 3.51
197 198 3.318839 TCAATGGGGCGATCAATTTCATC 59.681 43.478 0.00 0.00 0.00 2.92
198 199 3.298619 TCAATGGGGCGATCAATTTCAT 58.701 40.909 0.00 0.00 0.00 2.57
199 200 2.732763 TCAATGGGGCGATCAATTTCA 58.267 42.857 0.00 0.00 0.00 2.69
200 201 3.131046 ACTTCAATGGGGCGATCAATTTC 59.869 43.478 0.00 0.00 0.00 2.17
201 202 3.099141 ACTTCAATGGGGCGATCAATTT 58.901 40.909 0.00 0.00 0.00 1.82
202 203 2.738743 ACTTCAATGGGGCGATCAATT 58.261 42.857 0.00 0.00 0.00 2.32
203 204 2.428171 CAACTTCAATGGGGCGATCAAT 59.572 45.455 0.00 0.00 0.00 2.57
204 205 1.818060 CAACTTCAATGGGGCGATCAA 59.182 47.619 0.00 0.00 0.00 2.57
205 206 1.462616 CAACTTCAATGGGGCGATCA 58.537 50.000 0.00 0.00 0.00 2.92
206 207 0.101219 GCAACTTCAATGGGGCGATC 59.899 55.000 0.00 0.00 0.00 3.69
207 208 0.323725 AGCAACTTCAATGGGGCGAT 60.324 50.000 0.00 0.00 0.00 4.58
208 209 0.960364 GAGCAACTTCAATGGGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
209 210 0.962356 AGAGCAACTTCAATGGGGCG 60.962 55.000 0.00 0.00 0.00 6.13
210 211 1.260544 AAGAGCAACTTCAATGGGGC 58.739 50.000 0.00 0.00 32.91 5.80
211 212 3.955471 TCTAAGAGCAACTTCAATGGGG 58.045 45.455 0.00 0.00 39.72 4.96
212 213 5.065731 GTGATCTAAGAGCAACTTCAATGGG 59.934 44.000 0.00 0.00 39.72 4.00
213 214 5.879223 AGTGATCTAAGAGCAACTTCAATGG 59.121 40.000 0.00 0.00 39.72 3.16
214 215 6.981762 AGTGATCTAAGAGCAACTTCAATG 57.018 37.500 0.00 0.00 39.72 2.82
215 216 7.846066 AGTAGTGATCTAAGAGCAACTTCAAT 58.154 34.615 0.00 0.00 39.72 2.57
216 217 7.233389 AGTAGTGATCTAAGAGCAACTTCAA 57.767 36.000 0.00 0.00 39.72 2.69
217 218 6.842437 AGTAGTGATCTAAGAGCAACTTCA 57.158 37.500 0.00 0.00 39.72 3.02
257 258 7.927305 AAACGTAAACAAGAAGTACTCTCTC 57.073 36.000 0.00 0.00 31.02 3.20
260 261 9.924650 ATGATAAACGTAAACAAGAAGTACTCT 57.075 29.630 0.00 0.00 35.13 3.24
274 275 5.125900 TCTCCGGTCAAGATGATAAACGTAA 59.874 40.000 0.00 0.00 0.00 3.18
275 276 4.641541 TCTCCGGTCAAGATGATAAACGTA 59.358 41.667 0.00 0.00 0.00 3.57
293 294 0.833287 ACATCCAGGGTGATTCTCCG 59.167 55.000 6.75 0.00 0.00 4.63
307 308 1.335780 TGCACGCAATCAAACACATCC 60.336 47.619 0.00 0.00 0.00 3.51
310 311 1.336125 TGATGCACGCAATCAAACACA 59.664 42.857 0.00 0.00 0.00 3.72
340 341 2.284699 AAGTGGTCGAGGGAGGGG 60.285 66.667 0.00 0.00 0.00 4.79
358 359 2.380084 ATACGTTGCCACCACACTAG 57.620 50.000 0.00 0.00 0.00 2.57
367 368 2.680841 GAGGTTGCATAATACGTTGCCA 59.319 45.455 7.44 0.00 38.08 4.92
379 380 2.306805 TGTTGATGGAGAGAGGTTGCAT 59.693 45.455 0.00 0.00 0.00 3.96
388 389 2.169789 CGCCGCTGTTGATGGAGAG 61.170 63.158 0.00 0.00 0.00 3.20
389 390 1.960040 ATCGCCGCTGTTGATGGAGA 61.960 55.000 0.00 0.00 36.02 3.71
405 406 3.252215 AGAAGAGAATAGAGTCGCCATCG 59.748 47.826 0.00 0.00 0.00 3.84
430 431 1.816074 TTATTGACACCGCCTTCACC 58.184 50.000 0.00 0.00 0.00 4.02
444 445 8.505625 AGTGTTTTTGGCTGCATTTATTTATTG 58.494 29.630 0.50 0.00 0.00 1.90
450 451 5.480073 TCCTAGTGTTTTTGGCTGCATTTAT 59.520 36.000 0.50 0.00 0.00 1.40
453 454 3.230134 TCCTAGTGTTTTTGGCTGCATT 58.770 40.909 0.50 0.00 0.00 3.56
454 455 2.875296 TCCTAGTGTTTTTGGCTGCAT 58.125 42.857 0.50 0.00 0.00 3.96
455 456 2.356665 TCCTAGTGTTTTTGGCTGCA 57.643 45.000 0.50 0.00 0.00 4.41
456 457 2.672195 GCATCCTAGTGTTTTTGGCTGC 60.672 50.000 0.00 0.00 35.14 5.25
477 478 2.080286 AACAACCGAGACCGATCAAG 57.920 50.000 0.00 0.00 38.22 3.02
478 479 2.536761 AAACAACCGAGACCGATCAA 57.463 45.000 0.00 0.00 38.22 2.57
480 481 2.165030 TCCTAAACAACCGAGACCGATC 59.835 50.000 0.00 0.00 38.22 3.69
481 482 2.094338 GTCCTAAACAACCGAGACCGAT 60.094 50.000 0.00 0.00 38.22 4.18
482 483 1.270550 GTCCTAAACAACCGAGACCGA 59.729 52.381 0.00 0.00 38.22 4.69
484 485 3.064931 CAAGTCCTAAACAACCGAGACC 58.935 50.000 0.00 0.00 0.00 3.85
486 487 3.493699 CCACAAGTCCTAAACAACCGAGA 60.494 47.826 0.00 0.00 0.00 4.04
487 488 2.806244 CCACAAGTCCTAAACAACCGAG 59.194 50.000 0.00 0.00 0.00 4.63
488 489 2.435069 TCCACAAGTCCTAAACAACCGA 59.565 45.455 0.00 0.00 0.00 4.69
490 491 3.816994 AGTCCACAAGTCCTAAACAACC 58.183 45.455 0.00 0.00 0.00 3.77
491 492 4.638865 ACAAGTCCACAAGTCCTAAACAAC 59.361 41.667 0.00 0.00 0.00 3.32
492 493 4.638421 CACAAGTCCACAAGTCCTAAACAA 59.362 41.667 0.00 0.00 0.00 2.83
495 496 3.456644 TCCACAAGTCCACAAGTCCTAAA 59.543 43.478 0.00 0.00 0.00 1.85
496 497 3.042682 TCCACAAGTCCACAAGTCCTAA 58.957 45.455 0.00 0.00 0.00 2.69
497 498 2.632996 CTCCACAAGTCCACAAGTCCTA 59.367 50.000 0.00 0.00 0.00 2.94
498 499 1.417890 CTCCACAAGTCCACAAGTCCT 59.582 52.381 0.00 0.00 0.00 3.85
500 501 2.622064 ACTCCACAAGTCCACAAGTC 57.378 50.000 0.00 0.00 30.02 3.01
503 504 3.007940 CCATCTACTCCACAAGTCCACAA 59.992 47.826 0.00 0.00 39.55 3.33
504 505 2.567169 CCATCTACTCCACAAGTCCACA 59.433 50.000 0.00 0.00 39.55 4.17
505 506 2.093447 CCCATCTACTCCACAAGTCCAC 60.093 54.545 0.00 0.00 39.55 4.02
506 507 2.187958 CCCATCTACTCCACAAGTCCA 58.812 52.381 0.00 0.00 39.55 4.02
507 508 2.188817 ACCCATCTACTCCACAAGTCC 58.811 52.381 0.00 0.00 39.55 3.85
508 509 3.385111 CCTACCCATCTACTCCACAAGTC 59.615 52.174 0.00 0.00 39.55 3.01
509 510 3.375699 CCTACCCATCTACTCCACAAGT 58.624 50.000 0.00 0.00 42.33 3.16
511 512 2.116238 GCCTACCCATCTACTCCACAA 58.884 52.381 0.00 0.00 0.00 3.33
512 513 1.789523 GCCTACCCATCTACTCCACA 58.210 55.000 0.00 0.00 0.00 4.17
514 515 1.113517 GCGCCTACCCATCTACTCCA 61.114 60.000 0.00 0.00 0.00 3.86
515 516 1.666580 GCGCCTACCCATCTACTCC 59.333 63.158 0.00 0.00 0.00 3.85
516 517 1.286260 CGCGCCTACCCATCTACTC 59.714 63.158 0.00 0.00 0.00 2.59
517 518 2.857744 GCGCGCCTACCCATCTACT 61.858 63.158 23.24 0.00 0.00 2.57
519 520 1.682451 AAAGCGCGCCTACCCATCTA 61.682 55.000 30.33 0.00 0.00 1.98
521 522 2.513897 AAAGCGCGCCTACCCATC 60.514 61.111 30.33 0.00 0.00 3.51
522 523 2.824041 CAAAGCGCGCCTACCCAT 60.824 61.111 30.33 3.60 0.00 4.00
541 542 1.977594 AATAGCAAAAGTCCGGCGCG 61.978 55.000 0.00 0.00 0.00 6.86
542 543 0.248094 GAATAGCAAAAGTCCGGCGC 60.248 55.000 0.00 0.00 0.00 6.53
543 544 0.377203 GGAATAGCAAAAGTCCGGCG 59.623 55.000 0.00 0.00 0.00 6.46
544 545 0.738975 GGGAATAGCAAAAGTCCGGC 59.261 55.000 0.00 0.00 0.00 6.13
545 546 2.017049 CTGGGAATAGCAAAAGTCCGG 58.983 52.381 0.00 0.00 0.00 5.14
546 547 2.678336 GACTGGGAATAGCAAAAGTCCG 59.322 50.000 0.00 0.00 0.00 4.79
547 548 3.686016 TGACTGGGAATAGCAAAAGTCC 58.314 45.455 0.00 0.00 34.49 3.85
549 550 3.507622 GCTTGACTGGGAATAGCAAAAGT 59.492 43.478 0.00 0.00 0.00 2.66
581 582 7.850003 CACAAAAATTACGTTAAGTCGTGGTAA 59.150 33.333 0.00 0.00 43.93 2.85
582 583 7.343691 CACAAAAATTACGTTAAGTCGTGGTA 58.656 34.615 0.00 0.00 43.93 3.25
599 600 8.679100 CAAATTCATATTCATGGCCACAAAAAT 58.321 29.630 8.16 8.27 32.61 1.82
612 613 8.547894 CGAAATCGTCCTACAAATTCATATTCA 58.452 33.333 0.00 0.00 34.11 2.57
638 639 4.874396 CCTAGTTGTTTATTCTTCGGGGAC 59.126 45.833 0.00 0.00 0.00 4.46
644 645 9.968743 CGTACAAATCCTAGTTGTTTATTCTTC 57.031 33.333 2.88 0.00 39.80 2.87
645 646 9.715121 TCGTACAAATCCTAGTTGTTTATTCTT 57.285 29.630 2.88 0.00 39.80 2.52
647 648 8.106348 CGTCGTACAAATCCTAGTTGTTTATTC 58.894 37.037 2.88 0.00 39.80 1.75
686 687 3.787001 CGGGTTCTCCTGGGCTCC 61.787 72.222 0.00 0.00 36.50 4.70
720 1090 2.094700 TGAAGTAGACCTCATCACGTGC 60.095 50.000 11.67 0.00 0.00 5.34
744 1114 2.509336 CGGGGCGTCTTGCTACAG 60.509 66.667 0.00 0.00 45.43 2.74
819 1189 1.657487 ACGTGAGTTGACGAGCGTG 60.657 57.895 0.00 0.00 46.40 5.34
877 1247 3.326588 ACCTTTATGTAGTGTCAGTGCCA 59.673 43.478 0.00 0.00 0.00 4.92
1212 2346 3.741476 CCAACCTTGCCGAGCAGC 61.741 66.667 0.00 0.00 40.61 5.25
1639 2796 4.336153 TGCTCCGTACGTAGTTCATATTGA 59.664 41.667 15.21 0.00 37.78 2.57
1646 2803 3.061697 CCATTTTGCTCCGTACGTAGTTC 59.938 47.826 15.21 0.00 37.78 3.01
1667 2824 9.182933 GACGTATTTTAGAGTGTAGATTCATCC 57.817 37.037 0.00 0.00 0.00 3.51
1922 3083 2.903784 ACCAGGTTGCCCTTTTTAATCC 59.096 45.455 0.00 0.00 39.89 3.01
1923 3084 3.864540 GCACCAGGTTGCCCTTTTTAATC 60.865 47.826 0.00 0.00 39.89 1.75
1924 3085 2.038426 GCACCAGGTTGCCCTTTTTAAT 59.962 45.455 0.00 0.00 39.89 1.40
1925 3086 1.414550 GCACCAGGTTGCCCTTTTTAA 59.585 47.619 0.00 0.00 39.89 1.52
1926 3087 1.044611 GCACCAGGTTGCCCTTTTTA 58.955 50.000 0.00 0.00 39.89 1.52
1927 3088 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
1928 3089 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
1929 3090 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
1930 3091 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
1931 3092 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1932 3093 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1933 3094 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1934 3095 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1935 3096 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1936 3097 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1961 3122 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1962 3123 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1963 3124 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1964 3125 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1965 3126 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1966 3127 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1967 3128 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1968 3129 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1969 3130 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1970 3131 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1971 3132 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1972 3133 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1973 3134 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1974 3135 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1975 3136 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1976 3137 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1977 3138 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1978 3139 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1979 3140 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1980 3141 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1985 3146 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1986 3147 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1987 3148 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1988 3149 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1989 3150 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1990 3151 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1991 3152 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1992 3153 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1993 3154 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1994 3155 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1995 3156 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1996 3157 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1997 3158 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1998 3159 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1999 3160 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2000 3161 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2001 3162 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2002 3163 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2003 3164 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2004 3165 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2005 3166 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2006 3167 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2007 3168 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2008 3169 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2009 3170 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2010 3171 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2011 3172 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2012 3173 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2013 3174 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2014 3175 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2015 3176 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2016 3177 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2017 3178 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2018 3179 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2019 3180 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2020 3181 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2021 3182 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2022 3183 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2036 3197 1.850345 AGGGTTCAAGTCCTGGAAACA 59.150 47.619 0.00 0.00 32.36 2.83
2037 3198 2.230660 CAGGGTTCAAGTCCTGGAAAC 58.769 52.381 0.00 0.00 44.99 2.78
2038 3199 2.656947 CAGGGTTCAAGTCCTGGAAA 57.343 50.000 0.00 0.00 44.99 3.13
2043 3204 4.354087 AGTTTAATCCAGGGTTCAAGTCCT 59.646 41.667 0.00 0.00 0.00 3.85
2044 3205 4.663334 AGTTTAATCCAGGGTTCAAGTCC 58.337 43.478 0.00 0.00 0.00 3.85
2045 3206 6.294564 GGAAAGTTTAATCCAGGGTTCAAGTC 60.295 42.308 0.00 0.00 35.71 3.01
2046 3207 5.538813 GGAAAGTTTAATCCAGGGTTCAAGT 59.461 40.000 0.00 0.00 35.71 3.16
2047 3208 5.047306 GGGAAAGTTTAATCCAGGGTTCAAG 60.047 44.000 0.00 0.00 37.46 3.02
2048 3209 4.836175 GGGAAAGTTTAATCCAGGGTTCAA 59.164 41.667 0.00 0.00 37.46 2.69
2049 3210 4.412843 GGGAAAGTTTAATCCAGGGTTCA 58.587 43.478 0.00 0.00 37.46 3.18
2050 3211 3.767673 GGGGAAAGTTTAATCCAGGGTTC 59.232 47.826 0.00 0.00 37.46 3.62
2051 3212 3.143168 TGGGGAAAGTTTAATCCAGGGTT 59.857 43.478 0.00 0.00 37.46 4.11
2052 3213 2.725227 TGGGGAAAGTTTAATCCAGGGT 59.275 45.455 0.00 0.00 37.46 4.34
2053 3214 3.466395 TGGGGAAAGTTTAATCCAGGG 57.534 47.619 0.00 0.00 37.46 4.45
2054 3215 4.838423 ACTTTGGGGAAAGTTTAATCCAGG 59.162 41.667 0.00 0.00 39.81 4.45
2323 3484 9.656323 AAGGTATCATTACTTACAGTGGATAGA 57.344 33.333 0.00 0.00 0.00 1.98
2356 3517 2.507339 AAAATGGTGCAAGTTCACGG 57.493 45.000 0.00 0.00 37.83 4.94
2461 5113 1.133513 TGTGCAACTGGGGTTCTCAAT 60.134 47.619 0.00 0.00 38.04 2.57
2956 6714 9.377312 GATTGATGAAGAGTTAGAAGCTAACTT 57.623 33.333 17.90 6.34 37.83 2.66
2957 6715 8.535335 TGATTGATGAAGAGTTAGAAGCTAACT 58.465 33.333 17.12 17.12 40.15 2.24
3104 8165 6.530019 AGTTTTCAGTGAAATGGACAACTT 57.470 33.333 18.69 1.75 31.34 2.66
3366 8427 1.476891 GTGGCATAGGACTCGAGTTCA 59.523 52.381 25.58 12.00 0.00 3.18
3385 8447 2.665000 CTGGACATCACCGGCAGT 59.335 61.111 0.00 0.00 0.00 4.40
3476 8538 3.119849 CCCACTGAAGAAAAATGGCTACG 60.120 47.826 0.00 0.00 0.00 3.51
3556 8618 3.515901 AGTCCAACTCTGGTCAATACTCC 59.484 47.826 0.00 0.00 43.97 3.85
3671 8733 2.900716 TGTAGCACTACAGCACACAA 57.099 45.000 6.41 0.00 40.77 3.33
3976 9038 3.056328 GAGTTGCCCGCCCTTGTC 61.056 66.667 0.00 0.00 0.00 3.18
3984 9046 1.228124 TTCCACCTTGAGTTGCCCG 60.228 57.895 0.00 0.00 0.00 6.13
4089 9151 0.178978 GGATCTCCAATGCTTCCCCC 60.179 60.000 0.00 0.00 35.64 5.40
4126 9188 4.414956 TCCGGGGTCTCATGGCCT 62.415 66.667 3.32 0.00 0.00 5.19
4182 9244 2.683768 GGTGTGAGACCCTGGATATCT 58.316 52.381 2.05 0.00 39.10 1.98
4203 9265 1.043116 TGGATGTGCTAGACCTCCGG 61.043 60.000 0.00 0.00 41.21 5.14
4213 9275 0.107312 GCATCTCCACTGGATGTGCT 60.107 55.000 20.07 0.00 44.92 4.40
4216 9278 2.700783 TGGCATCTCCACTGGATGT 58.299 52.632 0.00 0.00 40.72 3.06
4227 9289 3.718434 TCTTTGAGGTATCCATGGCATCT 59.282 43.478 6.96 2.30 0.00 2.90
4245 9307 2.237392 CTCTGGAAACTCCGGGATCTTT 59.763 50.000 0.00 0.00 43.23 2.52
4256 9318 0.178891 TGGCTCCCTCTCTGGAAACT 60.179 55.000 0.00 0.00 38.35 2.66
4259 9321 1.413662 CCTATGGCTCCCTCTCTGGAA 60.414 57.143 0.00 0.00 38.35 3.53
4285 9347 4.227134 CCGTGCCCTGGATCTCCG 62.227 72.222 0.00 0.00 39.43 4.63
4371 9820 0.399091 CTAGTGCCCCTGGATCTCCA 60.399 60.000 0.00 0.00 45.30 3.86
4409 9929 7.669427 TCAAATTCATCATTGCCACTAAGTTT 58.331 30.769 0.00 0.00 0.00 2.66
4414 9934 6.153170 ACACATCAAATTCATCATTGCCACTA 59.847 34.615 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.