Multiple sequence alignment - TraesCS2A01G271700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G271700 chr2A 100.000 4099 0 0 1 4099 444626920 444622822 0.000000e+00 7570.0
1 TraesCS2A01G271700 chr2A 95.018 281 13 1 80 360 381498120 381498399 1.350000e-119 440.0
2 TraesCS2A01G271700 chr2A 94.872 273 13 1 82 354 331630302 331630573 3.790000e-115 425.0
3 TraesCS2A01G271700 chr2A 97.110 173 4 1 3171 3342 603083439 603083611 1.440000e-74 291.0
4 TraesCS2A01G271700 chr2A 90.476 168 10 5 2760 2921 702944283 702944116 2.480000e-52 217.0
5 TraesCS2A01G271700 chr2B 94.065 2241 74 29 556 2764 402220592 402218379 0.000000e+00 3347.0
6 TraesCS2A01G271700 chr2B 95.000 400 15 4 3330 3726 402218042 402217645 1.250000e-174 623.0
7 TraesCS2A01G271700 chr2B 93.478 276 17 1 2918 3192 402218377 402218102 3.810000e-110 409.0
8 TraesCS2A01G271700 chr2B 93.358 271 14 1 3758 4028 402217649 402217383 8.260000e-107 398.0
9 TraesCS2A01G271700 chr2B 92.258 155 8 4 356 509 402258003 402257852 2.480000e-52 217.0
10 TraesCS2A01G271700 chr2D 95.002 2141 52 24 645 2764 334043721 334041615 0.000000e+00 3310.0
11 TraesCS2A01G271700 chr2D 91.914 371 14 10 3728 4097 334041000 334040645 4.730000e-139 505.0
12 TraesCS2A01G271700 chr2D 90.934 364 25 4 3341 3697 334041359 334040997 2.220000e-132 483.0
13 TraesCS2A01G271700 chr2D 95.708 233 10 0 2949 3181 334041595 334041363 3.870000e-100 375.0
14 TraesCS2A01G271700 chr2D 90.805 174 13 3 357 530 334044192 334044022 3.190000e-56 230.0
15 TraesCS2A01G271700 chr2D 96.875 96 3 0 547 642 334044036 334043941 1.180000e-35 161.0
16 TraesCS2A01G271700 chr6D 84.528 530 77 2 1478 2007 161382100 161381576 1.690000e-143 520.0
17 TraesCS2A01G271700 chr6D 86.957 69 9 0 1375 1443 161382177 161382109 1.220000e-10 78.7
18 TraesCS2A01G271700 chr5D 92.883 281 18 2 80 360 232354492 232354214 1.370000e-109 407.0
19 TraesCS2A01G271700 chr5D 92.254 284 16 4 82 360 354814011 354813729 8.260000e-107 398.0
20 TraesCS2A01G271700 chr7B 91.901 284 22 1 76 359 107926059 107926341 2.970000e-106 396.0
21 TraesCS2A01G271700 chr1D 93.040 273 15 2 82 354 223030197 223030465 2.970000e-106 396.0
22 TraesCS2A01G271700 chr1D 92.473 279 17 3 82 360 291411879 291411605 2.970000e-106 396.0
23 TraesCS2A01G271700 chr1D 93.789 161 8 2 2760 2918 42271593 42271753 1.470000e-59 241.0
24 TraesCS2A01G271700 chr7A 91.608 286 23 1 74 359 556166930 556166646 1.070000e-105 394.0
25 TraesCS2A01G271700 chr7A 96.552 174 5 1 3170 3342 486649166 486649339 1.860000e-73 287.0
26 TraesCS2A01G271700 chr7A 91.975 162 11 2 2759 2918 158656437 158656276 4.120000e-55 226.0
27 TraesCS2A01G271700 chr6B 83.412 422 70 0 1478 1899 291184797 291184376 3.840000e-105 392.0
28 TraesCS2A01G271700 chr6B 90.625 64 6 0 1380 1443 291184869 291184806 7.300000e-13 86.1
29 TraesCS2A01G271700 chr7D 91.786 280 22 1 80 359 412828993 412829271 4.970000e-104 388.0
30 TraesCS2A01G271700 chr1B 98.830 171 2 0 3175 3345 639425689 639425859 5.150000e-79 305.0
31 TraesCS2A01G271700 chr1B 94.118 187 7 4 3171 3355 46873042 46872858 8.670000e-72 281.0
32 TraesCS2A01G271700 chr4B 98.246 171 3 0 3174 3344 671749679 671749849 2.390000e-77 300.0
33 TraesCS2A01G271700 chr3A 96.571 175 5 1 3170 3344 692357382 692357209 5.180000e-74 289.0
34 TraesCS2A01G271700 chr5A 96.532 173 6 0 3177 3349 659145358 659145530 1.860000e-73 287.0
35 TraesCS2A01G271700 chr4A 94.565 184 7 3 3161 3343 594145390 594145209 8.670000e-72 281.0
36 TraesCS2A01G271700 chr4A 94.054 185 10 1 3179 3362 570473211 570473027 3.120000e-71 279.0
37 TraesCS2A01G271700 chr4A 93.168 161 9 2 2760 2918 336084012 336084172 6.850000e-58 235.0
38 TraesCS2A01G271700 chr6A 93.210 162 8 2 2760 2918 64662255 64662416 6.850000e-58 235.0
39 TraesCS2A01G271700 chr6A 92.025 163 9 3 2760 2918 34240561 34240399 4.120000e-55 226.0
40 TraesCS2A01G271700 chr5B 92.949 156 10 1 2760 2914 128461397 128461552 4.120000e-55 226.0
41 TraesCS2A01G271700 chr1A 91.463 164 10 4 2759 2918 542369945 542369782 5.330000e-54 222.0
42 TraesCS2A01G271700 chr3B 91.975 162 6 4 2760 2918 157369800 157369957 1.920000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G271700 chr2A 444622822 444626920 4098 True 7570.00 7570 100.000000 1 4099 1 chr2A.!!$R1 4098
1 TraesCS2A01G271700 chr2B 402217383 402220592 3209 True 1194.25 3347 93.975250 556 4028 4 chr2B.!!$R2 3472
2 TraesCS2A01G271700 chr2D 334040645 334044192 3547 True 844.00 3310 93.539667 357 4097 6 chr2D.!!$R1 3740
3 TraesCS2A01G271700 chr6D 161381576 161382177 601 True 299.35 520 85.742500 1375 2007 2 chr6D.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.105039 ATAGCGCTTCCCGAGAAAGG 59.895 55.0 18.68 0.00 40.02 3.11 F
227 228 0.175760 CGCTTCCCGAGAAAGGATGA 59.824 55.0 0.00 0.00 40.02 2.92 F
1545 1763 0.392193 AGTACATCCAGCAGCTGCAC 60.392 55.0 38.24 25.34 45.16 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1693 0.389817 CATCTGCAACGACGAGGGAA 60.390 55.00 0.0 0.0 0.0 3.97 R
2144 2370 4.850680 ACAAAACTGTGGACTTGACCTTA 58.149 39.13 0.0 0.0 0.0 2.69 R
3108 3357 0.098376 CCAGCGACTAGTGACCGTAC 59.902 60.00 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.733337 AGAATTGAGATACATGCGACCC 58.267 45.455 0.00 0.00 0.00 4.46
56 57 2.550830 ATTGAGATACATGCGACCCC 57.449 50.000 0.00 0.00 0.00 4.95
57 58 1.199615 TTGAGATACATGCGACCCCA 58.800 50.000 0.00 0.00 0.00 4.96
58 59 0.464036 TGAGATACATGCGACCCCAC 59.536 55.000 0.00 0.00 0.00 4.61
59 60 0.753262 GAGATACATGCGACCCCACT 59.247 55.000 0.00 0.00 0.00 4.00
60 61 1.139058 GAGATACATGCGACCCCACTT 59.861 52.381 0.00 0.00 0.00 3.16
61 62 1.139058 AGATACATGCGACCCCACTTC 59.861 52.381 0.00 0.00 0.00 3.01
62 63 0.180406 ATACATGCGACCCCACTTCC 59.820 55.000 0.00 0.00 0.00 3.46
63 64 1.906105 TACATGCGACCCCACTTCCC 61.906 60.000 0.00 0.00 0.00 3.97
64 65 2.933287 ATGCGACCCCACTTCCCA 60.933 61.111 0.00 0.00 0.00 4.37
65 66 2.308722 ATGCGACCCCACTTCCCAT 61.309 57.895 0.00 0.00 0.00 4.00
66 67 0.986019 ATGCGACCCCACTTCCCATA 60.986 55.000 0.00 0.00 0.00 2.74
67 68 1.202099 TGCGACCCCACTTCCCATAA 61.202 55.000 0.00 0.00 0.00 1.90
68 69 0.182775 GCGACCCCACTTCCCATAAT 59.817 55.000 0.00 0.00 0.00 1.28
69 70 1.409661 GCGACCCCACTTCCCATAATT 60.410 52.381 0.00 0.00 0.00 1.40
70 71 2.948600 GCGACCCCACTTCCCATAATTT 60.949 50.000 0.00 0.00 0.00 1.82
71 72 3.361786 CGACCCCACTTCCCATAATTTT 58.638 45.455 0.00 0.00 0.00 1.82
72 73 3.767131 CGACCCCACTTCCCATAATTTTT 59.233 43.478 0.00 0.00 0.00 1.94
73 74 4.142249 CGACCCCACTTCCCATAATTTTTC 60.142 45.833 0.00 0.00 0.00 2.29
74 75 5.023452 GACCCCACTTCCCATAATTTTTCT 58.977 41.667 0.00 0.00 0.00 2.52
75 76 6.160483 ACCCCACTTCCCATAATTTTTCTA 57.840 37.500 0.00 0.00 0.00 2.10
76 77 6.752091 ACCCCACTTCCCATAATTTTTCTAT 58.248 36.000 0.00 0.00 0.00 1.98
77 78 7.196187 ACCCCACTTCCCATAATTTTTCTATT 58.804 34.615 0.00 0.00 0.00 1.73
78 79 7.344612 ACCCCACTTCCCATAATTTTTCTATTC 59.655 37.037 0.00 0.00 0.00 1.75
79 80 7.565029 CCCCACTTCCCATAATTTTTCTATTCT 59.435 37.037 0.00 0.00 0.00 2.40
80 81 8.981659 CCCACTTCCCATAATTTTTCTATTCTT 58.018 33.333 0.00 0.00 0.00 2.52
85 86 9.936329 TTCCCATAATTTTTCTATTCTTAGGCT 57.064 29.630 0.00 0.00 0.00 4.58
96 97 8.410673 TTCTATTCTTAGGCTAGTCATAGTGG 57.589 38.462 0.00 0.00 0.00 4.00
97 98 6.948886 TCTATTCTTAGGCTAGTCATAGTGGG 59.051 42.308 0.00 0.00 0.00 4.61
98 99 4.808767 TCTTAGGCTAGTCATAGTGGGA 57.191 45.455 0.00 0.00 0.00 4.37
99 100 4.730966 TCTTAGGCTAGTCATAGTGGGAG 58.269 47.826 0.00 0.00 0.00 4.30
100 101 4.168283 TCTTAGGCTAGTCATAGTGGGAGT 59.832 45.833 0.00 0.00 0.00 3.85
101 102 5.371769 TCTTAGGCTAGTCATAGTGGGAGTA 59.628 44.000 0.00 0.00 0.00 2.59
102 103 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
103 104 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
104 105 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
105 106 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
106 107 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
107 108 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
108 109 6.016108 GCTAGTCATAGTGGGAGTAACTTAGG 60.016 46.154 0.00 0.00 0.00 2.69
109 110 4.650131 AGTCATAGTGGGAGTAACTTAGGC 59.350 45.833 0.00 0.00 0.00 3.93
110 111 4.404715 GTCATAGTGGGAGTAACTTAGGCA 59.595 45.833 0.00 0.00 0.00 4.75
111 112 4.649674 TCATAGTGGGAGTAACTTAGGCAG 59.350 45.833 0.00 0.00 0.00 4.85
112 113 2.903926 AGTGGGAGTAACTTAGGCAGT 58.096 47.619 0.00 0.00 37.30 4.40
113 114 4.057063 AGTGGGAGTAACTTAGGCAGTA 57.943 45.455 0.00 0.00 32.94 2.74
114 115 4.422984 AGTGGGAGTAACTTAGGCAGTAA 58.577 43.478 0.00 0.00 32.94 2.24
115 116 4.222366 AGTGGGAGTAACTTAGGCAGTAAC 59.778 45.833 0.00 0.00 32.94 2.50
116 117 4.020839 GTGGGAGTAACTTAGGCAGTAACA 60.021 45.833 0.00 0.00 32.94 2.41
117 118 4.781087 TGGGAGTAACTTAGGCAGTAACAT 59.219 41.667 0.00 0.00 32.94 2.71
118 119 5.959594 TGGGAGTAACTTAGGCAGTAACATA 59.040 40.000 0.00 0.00 32.94 2.29
119 120 6.097839 TGGGAGTAACTTAGGCAGTAACATAG 59.902 42.308 0.00 0.00 32.94 2.23
120 121 5.984323 GGAGTAACTTAGGCAGTAACATAGC 59.016 44.000 0.00 0.00 32.94 2.97
121 122 5.589192 AGTAACTTAGGCAGTAACATAGCG 58.411 41.667 0.00 0.00 32.94 4.26
122 123 2.822764 ACTTAGGCAGTAACATAGCGC 58.177 47.619 0.00 0.00 31.97 5.92
123 124 2.167693 ACTTAGGCAGTAACATAGCGCA 59.832 45.455 11.47 0.00 31.97 6.09
124 125 2.218953 TAGGCAGTAACATAGCGCAC 57.781 50.000 11.47 0.00 0.00 5.34
125 126 0.537188 AGGCAGTAACATAGCGCACT 59.463 50.000 11.47 0.00 0.00 4.40
126 127 1.066143 AGGCAGTAACATAGCGCACTT 60.066 47.619 11.47 0.00 0.00 3.16
127 128 1.327764 GGCAGTAACATAGCGCACTTC 59.672 52.381 11.47 0.00 0.00 3.01
128 129 1.999735 GCAGTAACATAGCGCACTTCA 59.000 47.619 11.47 0.00 0.00 3.02
129 130 2.415168 GCAGTAACATAGCGCACTTCAA 59.585 45.455 11.47 0.00 0.00 2.69
130 131 3.484229 GCAGTAACATAGCGCACTTCAAG 60.484 47.826 11.47 0.00 0.00 3.02
131 132 3.926527 CAGTAACATAGCGCACTTCAAGA 59.073 43.478 11.47 0.00 0.00 3.02
132 133 4.568359 CAGTAACATAGCGCACTTCAAGAT 59.432 41.667 11.47 0.00 0.00 2.40
133 134 5.063944 CAGTAACATAGCGCACTTCAAGATT 59.936 40.000 11.47 0.00 0.00 2.40
134 135 5.643777 AGTAACATAGCGCACTTCAAGATTT 59.356 36.000 11.47 0.00 0.00 2.17
135 136 5.376854 AACATAGCGCACTTCAAGATTTT 57.623 34.783 11.47 0.00 0.00 1.82
136 137 5.376854 ACATAGCGCACTTCAAGATTTTT 57.623 34.783 11.47 0.00 0.00 1.94
161 162 9.664332 TTTTTGCTTATGTGGCATGTATTTAAT 57.336 25.926 0.00 0.00 39.54 1.40
162 163 8.645730 TTTGCTTATGTGGCATGTATTTAATG 57.354 30.769 0.00 0.00 39.54 1.90
163 164 7.579761 TGCTTATGTGGCATGTATTTAATGA 57.420 32.000 0.00 0.00 34.56 2.57
164 165 7.650890 TGCTTATGTGGCATGTATTTAATGAG 58.349 34.615 0.00 0.00 34.56 2.90
165 166 7.086376 GCTTATGTGGCATGTATTTAATGAGG 58.914 38.462 0.00 0.00 0.00 3.86
166 167 7.040478 GCTTATGTGGCATGTATTTAATGAGGA 60.040 37.037 0.00 0.00 0.00 3.71
167 168 6.889301 ATGTGGCATGTATTTAATGAGGAG 57.111 37.500 0.00 0.00 0.00 3.69
168 169 6.000246 TGTGGCATGTATTTAATGAGGAGA 58.000 37.500 0.00 0.00 0.00 3.71
169 170 6.057533 TGTGGCATGTATTTAATGAGGAGAG 58.942 40.000 0.00 0.00 0.00 3.20
170 171 6.126796 TGTGGCATGTATTTAATGAGGAGAGA 60.127 38.462 0.00 0.00 0.00 3.10
171 172 6.426328 GTGGCATGTATTTAATGAGGAGAGAG 59.574 42.308 0.00 0.00 0.00 3.20
172 173 5.936956 GGCATGTATTTAATGAGGAGAGAGG 59.063 44.000 0.00 0.00 0.00 3.69
173 174 6.465035 GGCATGTATTTAATGAGGAGAGAGGT 60.465 42.308 0.00 0.00 0.00 3.85
174 175 6.426328 GCATGTATTTAATGAGGAGAGAGGTG 59.574 42.308 0.00 0.00 0.00 4.00
175 176 7.504403 CATGTATTTAATGAGGAGAGAGGTGT 58.496 38.462 0.00 0.00 0.00 4.16
176 177 7.496346 TGTATTTAATGAGGAGAGAGGTGTT 57.504 36.000 0.00 0.00 0.00 3.32
177 178 7.918076 TGTATTTAATGAGGAGAGAGGTGTTT 58.082 34.615 0.00 0.00 0.00 2.83
178 179 9.042450 TGTATTTAATGAGGAGAGAGGTGTTTA 57.958 33.333 0.00 0.00 0.00 2.01
179 180 9.535878 GTATTTAATGAGGAGAGAGGTGTTTAG 57.464 37.037 0.00 0.00 0.00 1.85
180 181 7.792364 TTTAATGAGGAGAGAGGTGTTTAGA 57.208 36.000 0.00 0.00 0.00 2.10
181 182 5.930837 AATGAGGAGAGAGGTGTTTAGAG 57.069 43.478 0.00 0.00 0.00 2.43
182 183 4.390129 TGAGGAGAGAGGTGTTTAGAGT 57.610 45.455 0.00 0.00 0.00 3.24
183 184 5.516059 TGAGGAGAGAGGTGTTTAGAGTA 57.484 43.478 0.00 0.00 0.00 2.59
184 185 5.888901 TGAGGAGAGAGGTGTTTAGAGTAA 58.111 41.667 0.00 0.00 0.00 2.24
185 186 5.711036 TGAGGAGAGAGGTGTTTAGAGTAAC 59.289 44.000 0.00 0.00 0.00 2.50
186 187 5.642165 AGGAGAGAGGTGTTTAGAGTAACA 58.358 41.667 0.00 0.00 35.75 2.41
187 188 6.257586 AGGAGAGAGGTGTTTAGAGTAACAT 58.742 40.000 0.00 0.00 39.93 2.71
188 189 7.411808 AGGAGAGAGGTGTTTAGAGTAACATA 58.588 38.462 0.00 0.00 39.93 2.29
189 190 7.894364 AGGAGAGAGGTGTTTAGAGTAACATAA 59.106 37.037 0.00 0.00 39.93 1.90
190 191 8.697292 GGAGAGAGGTGTTTAGAGTAACATAAT 58.303 37.037 0.00 0.00 39.93 1.28
214 215 4.178540 TGTTACTGTAACATAGCGCTTCC 58.821 43.478 25.14 0.00 43.23 3.46
215 216 2.311124 ACTGTAACATAGCGCTTCCC 57.689 50.000 18.68 0.00 0.00 3.97
216 217 1.209128 CTGTAACATAGCGCTTCCCG 58.791 55.000 18.68 4.15 40.75 5.14
217 218 0.818938 TGTAACATAGCGCTTCCCGA 59.181 50.000 18.68 0.00 40.02 5.14
218 219 1.202371 TGTAACATAGCGCTTCCCGAG 60.202 52.381 18.68 1.79 40.02 4.63
219 220 1.066605 GTAACATAGCGCTTCCCGAGA 59.933 52.381 18.68 0.00 40.02 4.04
220 221 0.535335 AACATAGCGCTTCCCGAGAA 59.465 50.000 18.68 0.00 40.02 2.87
221 222 0.535335 ACATAGCGCTTCCCGAGAAA 59.465 50.000 18.68 0.00 40.02 2.52
222 223 1.212616 CATAGCGCTTCCCGAGAAAG 58.787 55.000 18.68 0.00 40.02 2.62
223 224 0.105039 ATAGCGCTTCCCGAGAAAGG 59.895 55.000 18.68 0.00 40.02 3.11
224 225 0.968901 TAGCGCTTCCCGAGAAAGGA 60.969 55.000 18.68 0.00 40.02 3.36
225 226 1.153349 GCGCTTCCCGAGAAAGGAT 60.153 57.895 0.00 0.00 40.02 3.24
226 227 1.432270 GCGCTTCCCGAGAAAGGATG 61.432 60.000 0.00 0.00 40.02 3.51
227 228 0.175760 CGCTTCCCGAGAAAGGATGA 59.824 55.000 0.00 0.00 40.02 2.92
228 229 1.804372 CGCTTCCCGAGAAAGGATGAG 60.804 57.143 0.00 0.00 40.02 2.90
229 230 1.208293 GCTTCCCGAGAAAGGATGAGT 59.792 52.381 0.00 0.00 32.10 3.41
230 231 2.740256 GCTTCCCGAGAAAGGATGAGTC 60.740 54.545 0.00 0.00 32.10 3.36
231 232 2.534042 TCCCGAGAAAGGATGAGTCT 57.466 50.000 0.00 0.00 0.00 3.24
232 233 3.664551 TCCCGAGAAAGGATGAGTCTA 57.335 47.619 0.00 0.00 0.00 2.59
233 234 3.288964 TCCCGAGAAAGGATGAGTCTAC 58.711 50.000 0.00 0.00 0.00 2.59
234 235 3.024547 CCCGAGAAAGGATGAGTCTACA 58.975 50.000 0.00 0.00 0.00 2.74
235 236 3.447586 CCCGAGAAAGGATGAGTCTACAA 59.552 47.826 0.00 0.00 0.00 2.41
236 237 4.440802 CCCGAGAAAGGATGAGTCTACAAG 60.441 50.000 0.00 0.00 0.00 3.16
237 238 4.399618 CCGAGAAAGGATGAGTCTACAAGA 59.600 45.833 0.00 0.00 0.00 3.02
238 239 5.068460 CCGAGAAAGGATGAGTCTACAAGAT 59.932 44.000 0.00 0.00 0.00 2.40
239 240 6.263392 CCGAGAAAGGATGAGTCTACAAGATA 59.737 42.308 0.00 0.00 0.00 1.98
240 241 7.201830 CCGAGAAAGGATGAGTCTACAAGATAA 60.202 40.741 0.00 0.00 0.00 1.75
241 242 8.356657 CGAGAAAGGATGAGTCTACAAGATAAT 58.643 37.037 0.00 0.00 0.00 1.28
268 269 9.975218 AAATAAACCCATCTATGACACTACTTT 57.025 29.630 0.00 0.00 0.00 2.66
269 270 9.975218 AATAAACCCATCTATGACACTACTTTT 57.025 29.630 0.00 0.00 0.00 2.27
272 273 8.964476 AACCCATCTATGACACTACTTTTATG 57.036 34.615 0.00 0.00 0.00 1.90
273 274 8.090788 ACCCATCTATGACACTACTTTTATGT 57.909 34.615 0.00 0.00 0.00 2.29
274 275 8.548877 ACCCATCTATGACACTACTTTTATGTT 58.451 33.333 0.00 0.00 0.00 2.71
282 283 8.439993 TGACACTACTTTTATGTTACTTTGCA 57.560 30.769 0.00 0.00 0.00 4.08
283 284 8.339714 TGACACTACTTTTATGTTACTTTGCAC 58.660 33.333 0.00 0.00 0.00 4.57
284 285 8.446599 ACACTACTTTTATGTTACTTTGCACT 57.553 30.769 0.00 0.00 0.00 4.40
285 286 9.550406 ACACTACTTTTATGTTACTTTGCACTA 57.450 29.630 0.00 0.00 0.00 2.74
288 289 9.988350 CTACTTTTATGTTACTTTGCACTATGG 57.012 33.333 0.00 0.00 0.00 2.74
289 290 8.630054 ACTTTTATGTTACTTTGCACTATGGA 57.370 30.769 0.00 0.00 0.00 3.41
290 291 8.730680 ACTTTTATGTTACTTTGCACTATGGAG 58.269 33.333 0.00 0.00 0.00 3.86
291 292 8.856153 TTTTATGTTACTTTGCACTATGGAGA 57.144 30.769 0.00 0.00 0.00 3.71
292 293 9.461312 TTTTATGTTACTTTGCACTATGGAGAT 57.539 29.630 0.00 0.00 0.00 2.75
294 295 9.764363 TTATGTTACTTTGCACTATGGAGATAG 57.236 33.333 0.00 0.00 38.06 2.08
295 296 7.182817 TGTTACTTTGCACTATGGAGATAGT 57.817 36.000 0.00 0.00 44.86 2.12
296 297 8.301252 TGTTACTTTGCACTATGGAGATAGTA 57.699 34.615 0.00 0.00 42.55 1.82
297 298 8.755028 TGTTACTTTGCACTATGGAGATAGTAA 58.245 33.333 0.00 0.00 42.55 2.24
298 299 9.032420 GTTACTTTGCACTATGGAGATAGTAAC 57.968 37.037 0.00 0.00 42.55 2.50
299 300 7.425224 ACTTTGCACTATGGAGATAGTAACT 57.575 36.000 0.00 0.00 42.55 2.24
300 301 7.852263 ACTTTGCACTATGGAGATAGTAACTT 58.148 34.615 0.00 0.00 42.55 2.66
301 302 8.978472 ACTTTGCACTATGGAGATAGTAACTTA 58.022 33.333 0.00 0.00 42.55 2.24
302 303 9.469807 CTTTGCACTATGGAGATAGTAACTTAG 57.530 37.037 0.00 0.00 42.55 2.18
303 304 8.762481 TTGCACTATGGAGATAGTAACTTAGA 57.238 34.615 0.00 0.00 42.55 2.10
304 305 8.167605 TGCACTATGGAGATAGTAACTTAGAC 57.832 38.462 0.00 0.00 42.55 2.59
305 306 7.999545 TGCACTATGGAGATAGTAACTTAGACT 59.000 37.037 0.00 0.00 42.55 3.24
306 307 9.504708 GCACTATGGAGATAGTAACTTAGACTA 57.495 37.037 0.00 0.00 42.55 2.59
311 312 8.961294 TGGAGATAGTAACTTAGACTAGTGTC 57.039 38.462 0.00 0.00 43.22 3.67
312 313 8.546322 TGGAGATAGTAACTTAGACTAGTGTCA 58.454 37.037 0.00 0.00 45.20 3.58
313 314 9.563748 GGAGATAGTAACTTAGACTAGTGTCAT 57.436 37.037 0.00 0.00 45.20 3.06
315 316 9.908747 AGATAGTAACTTAGACTAGTGTCATGT 57.091 33.333 0.00 0.00 45.20 3.21
341 342 8.694581 ATATGACACTAGTCTAAGTTACTCCC 57.305 38.462 0.00 0.00 45.20 4.30
342 343 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
343 344 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
344 345 5.015515 ACACTAGTCTAAGTTACTCCCCAC 58.984 45.833 0.00 0.00 0.00 4.61
345 346 5.222296 ACACTAGTCTAAGTTACTCCCCACT 60.222 44.000 0.00 0.00 0.00 4.00
346 347 6.012157 ACACTAGTCTAAGTTACTCCCCACTA 60.012 42.308 0.00 0.00 0.00 2.74
347 348 7.061688 CACTAGTCTAAGTTACTCCCCACTAT 58.938 42.308 0.00 0.00 0.00 2.12
348 349 7.013464 CACTAGTCTAAGTTACTCCCCACTATG 59.987 44.444 0.00 0.00 0.00 2.23
349 350 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
350 351 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
351 352 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
352 353 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
353 354 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
354 355 2.434702 GTTACTCCCCACTATGACCAGG 59.565 54.545 0.00 0.00 0.00 4.45
355 356 0.983378 ACTCCCCACTATGACCAGGC 60.983 60.000 0.00 0.00 0.00 4.85
374 375 9.160496 GACCAGGCTTATGATATTTCTATCTTG 57.840 37.037 0.00 0.00 35.69 3.02
375 376 8.664079 ACCAGGCTTATGATATTTCTATCTTGT 58.336 33.333 0.00 0.00 35.69 3.16
390 391 6.826668 TCTATCTTGTGAACCAAAGAAGACA 58.173 36.000 0.00 0.00 31.20 3.41
394 395 8.641498 ATCTTGTGAACCAAAGAAGACATTAT 57.359 30.769 0.00 0.00 31.20 1.28
395 396 9.739276 ATCTTGTGAACCAAAGAAGACATTATA 57.261 29.630 0.00 0.00 31.20 0.98
441 442 6.208599 CCAGTAGTAAACCCAAACATTCATGT 59.791 38.462 0.00 0.00 44.20 3.21
483 484 9.976511 TTTTAGTATGTGTAGGAATTAGGATCG 57.023 33.333 0.00 0.00 0.00 3.69
509 510 8.727910 GTCTTTAGTTTTAGGTAATGTCCTTGG 58.272 37.037 0.00 0.00 38.86 3.61
510 511 8.662255 TCTTTAGTTTTAGGTAATGTCCTTGGA 58.338 33.333 0.00 0.00 38.86 3.53
519 520 4.082190 GGTAATGTCCTTGGAAAAAGCCTC 60.082 45.833 0.00 0.00 0.00 4.70
521 522 2.306847 TGTCCTTGGAAAAAGCCTCAC 58.693 47.619 0.00 0.00 0.00 3.51
522 523 2.091885 TGTCCTTGGAAAAAGCCTCACT 60.092 45.455 0.00 0.00 0.00 3.41
523 524 2.959030 GTCCTTGGAAAAAGCCTCACTT 59.041 45.455 0.00 0.00 41.70 3.16
551 552 4.695014 TTTTTGCAGGGTGCCTCA 57.305 50.000 0.00 0.00 44.23 3.86
552 553 2.123409 TTTTTGCAGGGTGCCTCAC 58.877 52.632 0.00 0.00 44.23 3.51
902 1120 5.972382 CGCTTATATATAAGGGCTCGAAGAC 59.028 44.000 27.10 11.03 43.30 3.01
912 1130 1.423395 GCTCGAAGACACAAGTGAGG 58.577 55.000 7.28 0.00 0.00 3.86
981 1199 3.382832 AGCGACGAACCAGAGGGG 61.383 66.667 0.00 0.00 44.81 4.79
998 1216 4.910913 AGAGGGGAGAAGAAAGAAAGAAGT 59.089 41.667 0.00 0.00 0.00 3.01
1137 1355 2.029110 CGCCATTGTTGAGGGATTTTGT 60.029 45.455 0.00 0.00 0.00 2.83
1298 1516 3.171388 GGGATGGGGATGAGCGGT 61.171 66.667 0.00 0.00 0.00 5.68
1445 1663 0.877071 CCGAAACACAGCAGCATCTT 59.123 50.000 0.00 0.00 0.00 2.40
1475 1693 1.002773 AGAGACGGTTTTAACGGCCAT 59.997 47.619 2.24 0.00 41.14 4.40
1545 1763 0.392193 AGTACATCCAGCAGCTGCAC 60.392 55.000 38.24 25.34 45.16 4.57
1566 1784 1.687146 AGAGGAGCGGCAGATGGAA 60.687 57.895 1.45 0.00 0.00 3.53
2014 2234 3.861131 GCTCTGTTTCTGCTTCCGTTAGA 60.861 47.826 0.00 0.00 0.00 2.10
2017 2237 3.596214 TGTTTCTGCTTCCGTTAGATCC 58.404 45.455 0.00 0.00 0.00 3.36
2027 2247 5.615289 CTTCCGTTAGATCCCTTGATTGAT 58.385 41.667 0.00 0.00 0.00 2.57
2028 2248 4.960938 TCCGTTAGATCCCTTGATTGATG 58.039 43.478 0.00 0.00 0.00 3.07
2029 2249 4.653801 TCCGTTAGATCCCTTGATTGATGA 59.346 41.667 0.00 0.00 0.00 2.92
2052 2272 7.578852 TGATTGAATTGATGATAAGATGACGC 58.421 34.615 0.00 0.00 0.00 5.19
2144 2370 3.383505 AGGCACTTTTAGTTTCCGCTTTT 59.616 39.130 0.00 0.00 27.25 2.27
2260 2488 5.143369 ACTCAAAAGGCTCCAGAAAAAGAT 58.857 37.500 0.00 0.00 0.00 2.40
2302 2531 4.583871 GGCATCTCCTCGATCCATATTTT 58.416 43.478 0.00 0.00 0.00 1.82
2328 2557 1.645455 CTCGATTTGCCGCTGGATG 59.355 57.895 0.00 0.00 0.00 3.51
2378 2607 0.098552 TGGCAATCAATAAGCACGCG 59.901 50.000 3.53 3.53 0.00 6.01
2499 2728 3.968837 ATCACGTGGTCGGGGCCTA 62.969 63.158 17.00 0.00 41.28 3.93
2549 2778 1.811359 GCTCAGTGCAAGAAGATGCTT 59.189 47.619 0.00 0.00 46.54 3.91
2560 2789 2.500910 AGAAGATGCTTCCTCCTGTCTG 59.499 50.000 3.71 0.00 0.00 3.51
2633 2878 0.742505 TTCTCTTCCACACGTCACGT 59.257 50.000 0.00 0.00 42.36 4.49
2639 2884 1.942677 TCCACACGTCACGTTTGATT 58.057 45.000 18.01 0.00 39.48 2.57
2640 2885 2.281517 TCCACACGTCACGTTTGATTT 58.718 42.857 18.01 0.00 39.48 2.17
2641 2886 2.678836 TCCACACGTCACGTTTGATTTT 59.321 40.909 18.01 0.00 39.48 1.82
2709 2957 2.223572 GCGCCACATGCTTTAAGCTAAT 60.224 45.455 18.20 1.11 42.97 1.73
2727 2975 4.322801 GCTAATCCCCGTGCTGTATTATCT 60.323 45.833 0.00 0.00 0.00 1.98
2731 2979 3.572682 TCCCCGTGCTGTATTATCTGTAG 59.427 47.826 0.00 0.00 0.00 2.74
2733 2981 4.521639 CCCCGTGCTGTATTATCTGTAGTA 59.478 45.833 0.00 0.00 0.00 1.82
2735 2983 5.241064 CCCGTGCTGTATTATCTGTAGTAGT 59.759 44.000 0.00 0.00 0.00 2.73
2764 3012 4.637483 TTCAATCCGGATGAGATTTTGC 57.363 40.909 19.95 0.00 31.56 3.68
2765 3013 3.889815 TCAATCCGGATGAGATTTTGCT 58.110 40.909 19.95 0.00 31.56 3.91
2766 3014 5.034852 TCAATCCGGATGAGATTTTGCTA 57.965 39.130 19.95 0.00 31.56 3.49
2767 3015 5.436175 TCAATCCGGATGAGATTTTGCTAA 58.564 37.500 19.95 0.00 31.56 3.09
2768 3016 5.885352 TCAATCCGGATGAGATTTTGCTAAA 59.115 36.000 19.95 0.00 31.56 1.85
2769 3017 6.038603 TCAATCCGGATGAGATTTTGCTAAAG 59.961 38.462 19.95 0.00 31.56 1.85
2770 3018 3.627577 TCCGGATGAGATTTTGCTAAAGC 59.372 43.478 0.00 0.41 42.50 3.51
2771 3019 9.490337 CAATCCGGATGAGATTTTGCTAAAGCA 62.490 40.741 19.95 0.00 39.46 3.91
2805 3053 5.928976 TGCATAAGTATTGCACATCTAGGT 58.071 37.500 0.00 0.00 44.73 3.08
2806 3054 5.991606 TGCATAAGTATTGCACATCTAGGTC 59.008 40.000 0.00 0.00 44.73 3.85
2807 3055 5.409826 GCATAAGTATTGCACATCTAGGTCC 59.590 44.000 0.00 0.00 39.90 4.46
2808 3056 6.742644 GCATAAGTATTGCACATCTAGGTCCT 60.743 42.308 0.00 0.00 39.90 3.85
2809 3057 7.525526 GCATAAGTATTGCACATCTAGGTCCTA 60.526 40.741 0.00 0.00 39.90 2.94
2810 3058 8.535335 CATAAGTATTGCACATCTAGGTCCTAT 58.465 37.037 0.00 0.00 0.00 2.57
2811 3059 9.769677 ATAAGTATTGCACATCTAGGTCCTATA 57.230 33.333 0.00 0.00 0.00 1.31
2812 3060 8.671987 AAGTATTGCACATCTAGGTCCTATAT 57.328 34.615 0.00 0.00 0.00 0.86
2813 3061 8.299990 AGTATTGCACATCTAGGTCCTATATC 57.700 38.462 0.00 0.00 0.00 1.63
2814 3062 7.895962 AGTATTGCACATCTAGGTCCTATATCA 59.104 37.037 0.00 0.00 0.00 2.15
2815 3063 7.746243 ATTGCACATCTAGGTCCTATATCAT 57.254 36.000 0.00 0.00 0.00 2.45
2816 3064 7.559335 TTGCACATCTAGGTCCTATATCATT 57.441 36.000 0.00 0.00 0.00 2.57
2817 3065 6.939622 TGCACATCTAGGTCCTATATCATTG 58.060 40.000 0.00 0.00 0.00 2.82
2818 3066 6.725834 TGCACATCTAGGTCCTATATCATTGA 59.274 38.462 0.00 0.00 0.00 2.57
2819 3067 7.401204 TGCACATCTAGGTCCTATATCATTGAT 59.599 37.037 4.28 4.28 0.00 2.57
2820 3068 7.925483 GCACATCTAGGTCCTATATCATTGATC 59.075 40.741 1.55 0.00 0.00 2.92
2821 3069 9.199645 CACATCTAGGTCCTATATCATTGATCT 57.800 37.037 1.55 0.00 0.00 2.75
2822 3070 9.781425 ACATCTAGGTCCTATATCATTGATCTT 57.219 33.333 1.55 0.00 0.00 2.40
2825 3073 9.397280 TCTAGGTCCTATATCATTGATCTTACG 57.603 37.037 1.55 0.00 0.00 3.18
2826 3074 9.179909 CTAGGTCCTATATCATTGATCTTACGT 57.820 37.037 1.55 0.00 0.00 3.57
2827 3075 8.423906 AGGTCCTATATCATTGATCTTACGTT 57.576 34.615 1.55 0.00 0.00 3.99
2828 3076 9.529823 AGGTCCTATATCATTGATCTTACGTTA 57.470 33.333 1.55 0.00 0.00 3.18
2845 3093 9.590451 TCTTACGTTAAGATTCGTATGGATTTT 57.410 29.630 0.00 0.00 39.73 1.82
2872 3120 7.984422 TTTCTCTTTATGCTTGATTCACTCA 57.016 32.000 0.00 0.00 0.00 3.41
2873 3121 8.571461 TTTCTCTTTATGCTTGATTCACTCAT 57.429 30.769 5.49 5.49 32.72 2.90
2874 3122 8.571461 TTCTCTTTATGCTTGATTCACTCATT 57.429 30.769 5.48 0.00 32.72 2.57
2875 3123 8.571461 TCTCTTTATGCTTGATTCACTCATTT 57.429 30.769 5.48 0.00 32.72 2.32
2876 3124 9.671279 TCTCTTTATGCTTGATTCACTCATTTA 57.329 29.630 5.48 0.00 32.72 1.40
2877 3125 9.932699 CTCTTTATGCTTGATTCACTCATTTAG 57.067 33.333 5.48 4.66 32.72 1.85
2878 3126 9.671279 TCTTTATGCTTGATTCACTCATTTAGA 57.329 29.630 5.48 6.26 32.72 2.10
2881 3129 7.876936 ATGCTTGATTCACTCATTTAGATGT 57.123 32.000 0.00 0.00 34.77 3.06
2882 3130 7.080353 TGCTTGATTCACTCATTTAGATGTG 57.920 36.000 0.00 0.00 34.77 3.21
2883 3131 5.970023 GCTTGATTCACTCATTTAGATGTGC 59.030 40.000 0.00 0.00 34.77 4.57
2884 3132 6.403964 GCTTGATTCACTCATTTAGATGTGCA 60.404 38.462 0.00 0.00 34.77 4.57
2885 3133 7.451501 TTGATTCACTCATTTAGATGTGCAA 57.548 32.000 0.00 0.00 34.77 4.08
2886 3134 7.634671 TGATTCACTCATTTAGATGTGCAAT 57.365 32.000 0.00 0.00 34.77 3.56
2887 3135 8.735692 TGATTCACTCATTTAGATGTGCAATA 57.264 30.769 0.00 0.00 34.77 1.90
2888 3136 9.176460 TGATTCACTCATTTAGATGTGCAATAA 57.824 29.630 0.00 0.00 34.77 1.40
2889 3137 9.443283 GATTCACTCATTTAGATGTGCAATAAC 57.557 33.333 0.00 0.00 34.77 1.89
2890 3138 8.565896 TTCACTCATTTAGATGTGCAATAACT 57.434 30.769 0.00 0.00 34.77 2.24
2891 3139 9.665719 TTCACTCATTTAGATGTGCAATAACTA 57.334 29.630 0.00 0.00 34.77 2.24
2892 3140 9.317936 TCACTCATTTAGATGTGCAATAACTAG 57.682 33.333 0.00 0.00 34.77 2.57
2893 3141 9.317936 CACTCATTTAGATGTGCAATAACTAGA 57.682 33.333 0.00 0.00 34.77 2.43
2894 3142 9.539825 ACTCATTTAGATGTGCAATAACTAGAG 57.460 33.333 0.00 0.00 34.77 2.43
2895 3143 8.370493 TCATTTAGATGTGCAATAACTAGAGC 57.630 34.615 0.00 0.00 34.77 4.09
2896 3144 7.986889 TCATTTAGATGTGCAATAACTAGAGCA 59.013 33.333 0.00 0.00 34.77 4.26
2930 3178 5.691754 GTGCCCTAAACATAATATTTGCTGC 59.308 40.000 0.00 0.00 0.00 5.25
2966 3214 3.071602 TCTGGAGACAATATTAGCAGCCC 59.928 47.826 0.00 0.00 42.06 5.19
3050 3299 1.685421 GGTGGAGGCTGCTCTCTCT 60.685 63.158 7.74 0.00 34.39 3.10
3092 3341 0.525668 CGCCGCTTAGTTCGATGAGT 60.526 55.000 0.00 0.00 0.00 3.41
3108 3357 5.243954 TCGATGAGTTATTAGGGATCACTGG 59.756 44.000 8.05 0.00 0.00 4.00
3135 3384 1.816835 CACTAGTCGCTGGTCACCTAA 59.183 52.381 0.00 0.00 0.00 2.69
3158 3407 3.358111 TCACCTCACCTAGTCTCTCTG 57.642 52.381 0.00 0.00 0.00 3.35
3168 3417 1.055040 AGTCTCTCTGTTGCAAGGCT 58.945 50.000 0.00 0.00 0.00 4.58
3188 3437 8.361139 CAAGGCTAATATTATATACTCCCTCCG 58.639 40.741 0.00 0.00 0.00 4.63
3192 3441 8.358895 GCTAATATTATATACTCCCTCCGTTCC 58.641 40.741 0.00 0.00 0.00 3.62
3193 3442 9.643735 CTAATATTATATACTCCCTCCGTTCCT 57.356 37.037 0.00 0.00 0.00 3.36
3201 3450 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3205 3454 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3207 3456 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3208 3457 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3210 3459 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3211 3460 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3212 3461 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3213 3462 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3214 3463 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3221 3470 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3222 3471 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3223 3472 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3225 3474 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3226 3475 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3227 3476 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3228 3477 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3229 3478 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3231 3480 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3233 3482 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3234 3483 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3235 3484 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3236 3485 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3237 3486 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3238 3487 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3239 3488 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3240 3489 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3241 3490 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3242 3491 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3243 3492 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3244 3493 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3245 3494 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3246 3495 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3247 3496 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3248 3497 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3249 3498 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3250 3499 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3251 3500 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3252 3501 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3253 3502 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3254 3503 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3255 3504 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3256 3505 3.438087 ACGGAGCAAAATGAGTGAATCTG 59.562 43.478 0.00 0.00 0.00 2.90
3257 3506 3.730061 CGGAGCAAAATGAGTGAATCTGC 60.730 47.826 0.00 0.00 0.00 4.26
3258 3507 3.192001 GGAGCAAAATGAGTGAATCTGCA 59.808 43.478 0.00 0.00 0.00 4.41
3259 3508 4.164294 GAGCAAAATGAGTGAATCTGCAC 58.836 43.478 0.00 0.00 39.05 4.57
3273 3522 9.236006 AGTGAATCTGCACTTTAAAATATGTCT 57.764 29.630 0.00 0.00 46.42 3.41
3302 3551 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
3303 3552 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
3304 3553 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
3305 3554 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
3306 3555 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
3307 3556 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
3308 3557 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
3309 3558 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
3448 3700 1.065418 ACGAGGCAATAACTCAAGGGG 60.065 52.381 0.00 0.00 34.66 4.79
3451 3703 3.542648 GAGGCAATAACTCAAGGGGTAC 58.457 50.000 0.00 0.00 35.09 3.34
3505 3758 5.316167 TGTGTAAAGGTCTTCATGAGCATT 58.684 37.500 0.00 0.00 44.98 3.56
3624 3877 1.000385 TGCCGTTCTCCATGCAAAAAG 60.000 47.619 0.00 0.00 0.00 2.27
3659 3917 5.453567 AAATAGTTCTTGGAGTTTGGTGC 57.546 39.130 0.00 0.00 0.00 5.01
3692 3950 4.133013 GCAGGAAAAATCATCTGCCAAT 57.867 40.909 0.00 0.00 44.70 3.16
3719 3977 2.584791 CACAAGTTTGCCGCAACTATC 58.415 47.619 4.98 0.00 0.00 2.08
3721 3979 2.819608 ACAAGTTTGCCGCAACTATCAT 59.180 40.909 4.98 0.00 0.00 2.45
3722 3980 3.173599 CAAGTTTGCCGCAACTATCATG 58.826 45.455 4.98 0.00 0.00 3.07
3723 3981 2.436417 AGTTTGCCGCAACTATCATGT 58.564 42.857 4.98 0.00 0.00 3.21
3724 3982 2.819608 AGTTTGCCGCAACTATCATGTT 59.180 40.909 4.98 0.00 0.00 2.71
3725 3983 3.255642 AGTTTGCCGCAACTATCATGTTT 59.744 39.130 4.98 0.00 0.00 2.83
3726 3984 3.932545 TTGCCGCAACTATCATGTTTT 57.067 38.095 0.38 0.00 0.00 2.43
3727 3985 3.932545 TGCCGCAACTATCATGTTTTT 57.067 38.095 0.00 0.00 0.00 1.94
3728 3986 3.573598 TGCCGCAACTATCATGTTTTTG 58.426 40.909 0.00 0.00 0.00 2.44
3729 3987 3.005261 TGCCGCAACTATCATGTTTTTGT 59.995 39.130 0.00 0.00 0.00 2.83
3730 3988 3.364621 GCCGCAACTATCATGTTTTTGTG 59.635 43.478 0.00 0.00 0.00 3.33
3731 3989 4.793071 CCGCAACTATCATGTTTTTGTGA 58.207 39.130 11.56 0.00 30.81 3.58
3732 3990 5.401550 CCGCAACTATCATGTTTTTGTGAT 58.598 37.500 11.56 0.00 38.53 3.06
3733 3991 6.550843 CCGCAACTATCATGTTTTTGTGATA 58.449 36.000 11.56 0.00 36.53 2.15
3870 4128 1.209128 GTTGACGTGGTCACTGTCAG 58.791 55.000 19.36 0.00 42.60 3.51
3899 4157 1.202348 GCATTTCAGTAGTGGCAACCC 59.798 52.381 0.00 0.00 0.00 4.11
4029 4289 4.336889 TCCCATGCTATTTCGTCCTTAG 57.663 45.455 0.00 0.00 0.00 2.18
4030 4290 3.709653 TCCCATGCTATTTCGTCCTTAGT 59.290 43.478 0.00 0.00 0.00 2.24
4050 4311 2.611225 AGACCAATCTCTTCGATGGC 57.389 50.000 0.34 0.00 31.20 4.40
4062 4323 3.197766 TCTTCGATGGCACTACCTTCATT 59.802 43.478 0.00 0.00 41.68 2.57
4063 4324 3.179443 TCGATGGCACTACCTTCATTC 57.821 47.619 0.00 0.00 41.68 2.67
4077 4338 8.576442 ACTACCTTCATTCAACAAAATAGTTGG 58.424 33.333 6.95 0.00 46.74 3.77
4085 4346 4.641094 TCAACAAAATAGTTGGTCGGTTGT 59.359 37.500 6.95 0.00 46.74 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.337532 CGCATGTATCTCAATTCTTGTATGAAA 58.662 33.333 0.00 0.00 0.00 2.69
26 27 7.710475 TCGCATGTATCTCAATTCTTGTATGAA 59.290 33.333 0.00 0.00 0.00 2.57
27 28 7.169813 GTCGCATGTATCTCAATTCTTGTATGA 59.830 37.037 0.00 0.00 0.00 2.15
28 29 7.286508 GTCGCATGTATCTCAATTCTTGTATG 58.713 38.462 0.00 0.00 0.00 2.39
29 30 6.425114 GGTCGCATGTATCTCAATTCTTGTAT 59.575 38.462 0.00 0.00 0.00 2.29
30 31 5.753438 GGTCGCATGTATCTCAATTCTTGTA 59.247 40.000 0.00 0.00 0.00 2.41
31 32 4.572389 GGTCGCATGTATCTCAATTCTTGT 59.428 41.667 0.00 0.00 0.00 3.16
32 33 4.024556 GGGTCGCATGTATCTCAATTCTTG 60.025 45.833 0.00 0.00 0.00 3.02
33 34 4.130118 GGGTCGCATGTATCTCAATTCTT 58.870 43.478 0.00 0.00 0.00 2.52
34 35 3.495100 GGGGTCGCATGTATCTCAATTCT 60.495 47.826 0.00 0.00 0.00 2.40
35 36 2.808543 GGGGTCGCATGTATCTCAATTC 59.191 50.000 0.00 0.00 0.00 2.17
36 37 2.172505 TGGGGTCGCATGTATCTCAATT 59.827 45.455 0.00 0.00 0.00 2.32
37 38 1.768275 TGGGGTCGCATGTATCTCAAT 59.232 47.619 0.00 0.00 0.00 2.57
38 39 1.134521 GTGGGGTCGCATGTATCTCAA 60.135 52.381 0.00 0.00 0.00 3.02
39 40 0.464036 GTGGGGTCGCATGTATCTCA 59.536 55.000 0.00 0.00 0.00 3.27
40 41 0.753262 AGTGGGGTCGCATGTATCTC 59.247 55.000 0.00 0.00 0.00 2.75
41 42 1.139058 GAAGTGGGGTCGCATGTATCT 59.861 52.381 0.00 0.00 0.00 1.98
42 43 1.583054 GAAGTGGGGTCGCATGTATC 58.417 55.000 0.00 0.00 0.00 2.24
43 44 0.180406 GGAAGTGGGGTCGCATGTAT 59.820 55.000 0.00 0.00 0.00 2.29
44 45 1.600107 GGAAGTGGGGTCGCATGTA 59.400 57.895 0.00 0.00 0.00 2.29
45 46 2.351276 GGAAGTGGGGTCGCATGT 59.649 61.111 0.00 0.00 0.00 3.21
46 47 2.438434 GGGAAGTGGGGTCGCATG 60.438 66.667 0.00 0.00 0.00 4.06
47 48 0.986019 TATGGGAAGTGGGGTCGCAT 60.986 55.000 8.70 8.70 46.70 4.73
48 49 1.202099 TTATGGGAAGTGGGGTCGCA 61.202 55.000 0.00 0.00 41.53 5.10
49 50 0.182775 ATTATGGGAAGTGGGGTCGC 59.817 55.000 0.00 0.00 0.00 5.19
50 51 2.729028 AATTATGGGAAGTGGGGTCG 57.271 50.000 0.00 0.00 0.00 4.79
51 52 5.023452 AGAAAAATTATGGGAAGTGGGGTC 58.977 41.667 0.00 0.00 0.00 4.46
52 53 5.023514 AGAAAAATTATGGGAAGTGGGGT 57.976 39.130 0.00 0.00 0.00 4.95
53 54 7.565029 AGAATAGAAAAATTATGGGAAGTGGGG 59.435 37.037 0.00 0.00 0.00 4.96
54 55 8.539117 AGAATAGAAAAATTATGGGAAGTGGG 57.461 34.615 0.00 0.00 0.00 4.61
59 60 9.936329 AGCCTAAGAATAGAAAAATTATGGGAA 57.064 29.630 0.00 0.00 0.00 3.97
70 71 8.861086 CCACTATGACTAGCCTAAGAATAGAAA 58.139 37.037 0.00 0.00 0.00 2.52
71 72 7.451877 CCCACTATGACTAGCCTAAGAATAGAA 59.548 40.741 0.00 0.00 0.00 2.10
72 73 6.948886 CCCACTATGACTAGCCTAAGAATAGA 59.051 42.308 0.00 0.00 0.00 1.98
73 74 6.948886 TCCCACTATGACTAGCCTAAGAATAG 59.051 42.308 0.00 0.00 0.00 1.73
74 75 6.860034 TCCCACTATGACTAGCCTAAGAATA 58.140 40.000 0.00 0.00 0.00 1.75
75 76 5.716979 TCCCACTATGACTAGCCTAAGAAT 58.283 41.667 0.00 0.00 0.00 2.40
76 77 5.138758 TCCCACTATGACTAGCCTAAGAA 57.861 43.478 0.00 0.00 0.00 2.52
77 78 4.168283 ACTCCCACTATGACTAGCCTAAGA 59.832 45.833 0.00 0.00 0.00 2.10
78 79 4.475345 ACTCCCACTATGACTAGCCTAAG 58.525 47.826 0.00 0.00 0.00 2.18
79 80 4.537945 ACTCCCACTATGACTAGCCTAA 57.462 45.455 0.00 0.00 0.00 2.69
80 81 5.133999 AGTTACTCCCACTATGACTAGCCTA 59.866 44.000 0.00 0.00 0.00 3.93
81 82 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
82 83 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
83 84 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
84 85 6.016108 GCCTAAGTTACTCCCACTATGACTAG 60.016 46.154 0.00 0.00 0.00 2.57
85 86 5.832060 GCCTAAGTTACTCCCACTATGACTA 59.168 44.000 0.00 0.00 0.00 2.59
86 87 4.650131 GCCTAAGTTACTCCCACTATGACT 59.350 45.833 0.00 0.00 0.00 3.41
87 88 4.404715 TGCCTAAGTTACTCCCACTATGAC 59.595 45.833 0.00 0.00 0.00 3.06
88 89 4.616553 TGCCTAAGTTACTCCCACTATGA 58.383 43.478 0.00 0.00 0.00 2.15
89 90 4.406003 ACTGCCTAAGTTACTCCCACTATG 59.594 45.833 0.00 0.00 34.57 2.23
90 91 4.621769 ACTGCCTAAGTTACTCCCACTAT 58.378 43.478 0.00 0.00 34.57 2.12
91 92 4.057063 ACTGCCTAAGTTACTCCCACTA 57.943 45.455 0.00 0.00 34.57 2.74
92 93 2.903926 ACTGCCTAAGTTACTCCCACT 58.096 47.619 0.00 0.00 34.57 4.00
93 94 4.020839 TGTTACTGCCTAAGTTACTCCCAC 60.021 45.833 0.00 0.00 38.87 4.61
94 95 4.161876 TGTTACTGCCTAAGTTACTCCCA 58.838 43.478 0.00 0.00 38.87 4.37
95 96 4.813750 TGTTACTGCCTAAGTTACTCCC 57.186 45.455 0.00 0.00 38.87 4.30
96 97 5.984323 GCTATGTTACTGCCTAAGTTACTCC 59.016 44.000 0.00 0.00 38.87 3.85
97 98 5.686397 CGCTATGTTACTGCCTAAGTTACTC 59.314 44.000 0.00 0.00 38.87 2.59
98 99 5.589192 CGCTATGTTACTGCCTAAGTTACT 58.411 41.667 0.00 0.00 38.87 2.24
99 100 4.208666 GCGCTATGTTACTGCCTAAGTTAC 59.791 45.833 0.00 0.00 40.56 2.50
100 101 4.142116 TGCGCTATGTTACTGCCTAAGTTA 60.142 41.667 9.73 0.00 40.56 2.24
101 102 3.195661 GCGCTATGTTACTGCCTAAGTT 58.804 45.455 0.00 0.00 40.56 2.66
102 103 2.167693 TGCGCTATGTTACTGCCTAAGT 59.832 45.455 9.73 0.00 43.40 2.24
103 104 2.540101 GTGCGCTATGTTACTGCCTAAG 59.460 50.000 9.73 0.00 0.00 2.18
104 105 2.167693 AGTGCGCTATGTTACTGCCTAA 59.832 45.455 9.73 0.00 0.00 2.69
105 106 1.754803 AGTGCGCTATGTTACTGCCTA 59.245 47.619 9.73 0.00 0.00 3.93
106 107 0.537188 AGTGCGCTATGTTACTGCCT 59.463 50.000 9.73 0.00 0.00 4.75
107 108 1.327764 GAAGTGCGCTATGTTACTGCC 59.672 52.381 9.73 0.00 0.00 4.85
108 109 1.999735 TGAAGTGCGCTATGTTACTGC 59.000 47.619 9.73 0.94 0.00 4.40
109 110 3.926527 TCTTGAAGTGCGCTATGTTACTG 59.073 43.478 9.73 0.00 0.00 2.74
110 111 4.188247 TCTTGAAGTGCGCTATGTTACT 57.812 40.909 9.73 0.00 0.00 2.24
111 112 5.470845 AATCTTGAAGTGCGCTATGTTAC 57.529 39.130 9.73 0.00 0.00 2.50
112 113 6.494893 AAAATCTTGAAGTGCGCTATGTTA 57.505 33.333 9.73 0.00 0.00 2.41
113 114 5.376854 AAAATCTTGAAGTGCGCTATGTT 57.623 34.783 9.73 0.00 0.00 2.71
114 115 5.376854 AAAAATCTTGAAGTGCGCTATGT 57.623 34.783 9.73 0.00 0.00 2.29
135 136 9.664332 ATTAAATACATGCCACATAAGCAAAAA 57.336 25.926 0.00 0.00 44.83 1.94
136 137 9.096160 CATTAAATACATGCCACATAAGCAAAA 57.904 29.630 0.00 0.00 44.83 2.44
137 138 8.473219 TCATTAAATACATGCCACATAAGCAAA 58.527 29.630 0.00 0.00 44.83 3.68
138 139 8.005192 TCATTAAATACATGCCACATAAGCAA 57.995 30.769 0.00 0.00 44.83 3.91
139 140 7.255555 CCTCATTAAATACATGCCACATAAGCA 60.256 37.037 0.00 0.00 45.94 3.91
140 141 7.040478 TCCTCATTAAATACATGCCACATAAGC 60.040 37.037 0.00 0.00 0.00 3.09
141 142 8.394971 TCCTCATTAAATACATGCCACATAAG 57.605 34.615 0.00 0.00 0.00 1.73
142 143 8.217111 TCTCCTCATTAAATACATGCCACATAA 58.783 33.333 0.00 0.00 0.00 1.90
143 144 7.744733 TCTCCTCATTAAATACATGCCACATA 58.255 34.615 0.00 0.00 0.00 2.29
144 145 6.604171 TCTCCTCATTAAATACATGCCACAT 58.396 36.000 0.00 0.00 0.00 3.21
145 146 6.000246 TCTCCTCATTAAATACATGCCACA 58.000 37.500 0.00 0.00 0.00 4.17
146 147 6.291377 TCTCTCCTCATTAAATACATGCCAC 58.709 40.000 0.00 0.00 0.00 5.01
147 148 6.464892 CCTCTCTCCTCATTAAATACATGCCA 60.465 42.308 0.00 0.00 0.00 4.92
148 149 5.936956 CCTCTCTCCTCATTAAATACATGCC 59.063 44.000 0.00 0.00 0.00 4.40
149 150 6.426328 CACCTCTCTCCTCATTAAATACATGC 59.574 42.308 0.00 0.00 0.00 4.06
150 151 7.504403 ACACCTCTCTCCTCATTAAATACATG 58.496 38.462 0.00 0.00 0.00 3.21
151 152 7.682787 ACACCTCTCTCCTCATTAAATACAT 57.317 36.000 0.00 0.00 0.00 2.29
152 153 7.496346 AACACCTCTCTCCTCATTAAATACA 57.504 36.000 0.00 0.00 0.00 2.29
153 154 9.535878 CTAAACACCTCTCTCCTCATTAAATAC 57.464 37.037 0.00 0.00 0.00 1.89
154 155 9.488762 TCTAAACACCTCTCTCCTCATTAAATA 57.511 33.333 0.00 0.00 0.00 1.40
155 156 8.380742 TCTAAACACCTCTCTCCTCATTAAAT 57.619 34.615 0.00 0.00 0.00 1.40
156 157 7.455008 ACTCTAAACACCTCTCTCCTCATTAAA 59.545 37.037 0.00 0.00 0.00 1.52
157 158 6.954684 ACTCTAAACACCTCTCTCCTCATTAA 59.045 38.462 0.00 0.00 0.00 1.40
158 159 6.494952 ACTCTAAACACCTCTCTCCTCATTA 58.505 40.000 0.00 0.00 0.00 1.90
159 160 5.337788 ACTCTAAACACCTCTCTCCTCATT 58.662 41.667 0.00 0.00 0.00 2.57
160 161 4.941713 ACTCTAAACACCTCTCTCCTCAT 58.058 43.478 0.00 0.00 0.00 2.90
161 162 4.390129 ACTCTAAACACCTCTCTCCTCA 57.610 45.455 0.00 0.00 0.00 3.86
162 163 5.711036 TGTTACTCTAAACACCTCTCTCCTC 59.289 44.000 0.00 0.00 34.50 3.71
163 164 5.642165 TGTTACTCTAAACACCTCTCTCCT 58.358 41.667 0.00 0.00 34.50 3.69
164 165 5.979288 TGTTACTCTAAACACCTCTCTCC 57.021 43.478 0.00 0.00 34.50 3.71
193 194 3.554731 GGGAAGCGCTATGTTACAGTAAC 59.445 47.826 12.05 15.58 39.11 2.50
194 195 3.735820 CGGGAAGCGCTATGTTACAGTAA 60.736 47.826 12.05 0.00 0.00 2.24
195 196 2.223641 CGGGAAGCGCTATGTTACAGTA 60.224 50.000 12.05 0.00 0.00 2.74
196 197 1.470979 CGGGAAGCGCTATGTTACAGT 60.471 52.381 12.05 0.00 0.00 3.55
197 198 1.202371 TCGGGAAGCGCTATGTTACAG 60.202 52.381 12.05 0.00 0.00 2.74
198 199 0.818938 TCGGGAAGCGCTATGTTACA 59.181 50.000 12.05 0.00 0.00 2.41
199 200 1.066605 TCTCGGGAAGCGCTATGTTAC 59.933 52.381 12.05 0.00 0.00 2.50
200 201 1.395635 TCTCGGGAAGCGCTATGTTA 58.604 50.000 12.05 0.00 0.00 2.41
201 202 0.535335 TTCTCGGGAAGCGCTATGTT 59.465 50.000 12.05 0.00 0.00 2.71
202 203 0.535335 TTTCTCGGGAAGCGCTATGT 59.465 50.000 12.05 0.00 32.61 2.29
203 204 1.212616 CTTTCTCGGGAAGCGCTATG 58.787 55.000 12.05 0.24 32.61 2.23
204 205 0.105039 CCTTTCTCGGGAAGCGCTAT 59.895 55.000 12.05 0.00 32.61 2.97
205 206 0.968901 TCCTTTCTCGGGAAGCGCTA 60.969 55.000 12.05 0.00 32.61 4.26
206 207 1.617947 ATCCTTTCTCGGGAAGCGCT 61.618 55.000 2.64 2.64 36.37 5.92
207 208 1.153349 ATCCTTTCTCGGGAAGCGC 60.153 57.895 0.00 0.00 36.37 5.92
208 209 0.175760 TCATCCTTTCTCGGGAAGCG 59.824 55.000 0.00 0.00 36.37 4.68
209 210 1.208293 ACTCATCCTTTCTCGGGAAGC 59.792 52.381 0.00 0.00 36.37 3.86
210 211 2.763448 AGACTCATCCTTTCTCGGGAAG 59.237 50.000 0.00 0.00 36.37 3.46
211 212 2.821437 AGACTCATCCTTTCTCGGGAA 58.179 47.619 0.00 0.00 36.37 3.97
212 213 2.534042 AGACTCATCCTTTCTCGGGA 57.466 50.000 0.00 0.00 37.26 5.14
213 214 3.024547 TGTAGACTCATCCTTTCTCGGG 58.975 50.000 0.00 0.00 0.00 5.14
214 215 4.399618 TCTTGTAGACTCATCCTTTCTCGG 59.600 45.833 0.00 0.00 0.00 4.63
215 216 5.568685 TCTTGTAGACTCATCCTTTCTCG 57.431 43.478 0.00 0.00 0.00 4.04
242 243 9.975218 AAAGTAGTGTCATAGATGGGTTTATTT 57.025 29.630 0.00 0.00 0.00 1.40
243 244 9.975218 AAAAGTAGTGTCATAGATGGGTTTATT 57.025 29.630 0.00 0.00 0.00 1.40
246 247 9.396022 CATAAAAGTAGTGTCATAGATGGGTTT 57.604 33.333 0.00 0.00 0.00 3.27
247 248 8.548877 ACATAAAAGTAGTGTCATAGATGGGTT 58.451 33.333 0.00 0.00 0.00 4.11
248 249 8.090788 ACATAAAAGTAGTGTCATAGATGGGT 57.909 34.615 0.00 0.00 0.00 4.51
249 250 8.964476 AACATAAAAGTAGTGTCATAGATGGG 57.036 34.615 0.00 0.00 0.00 4.00
256 257 9.062524 TGCAAAGTAACATAAAAGTAGTGTCAT 57.937 29.630 0.00 0.00 0.00 3.06
257 258 8.339714 GTGCAAAGTAACATAAAAGTAGTGTCA 58.660 33.333 0.00 0.00 0.00 3.58
258 259 8.557029 AGTGCAAAGTAACATAAAAGTAGTGTC 58.443 33.333 0.00 0.00 0.00 3.67
259 260 8.446599 AGTGCAAAGTAACATAAAAGTAGTGT 57.553 30.769 0.00 0.00 0.00 3.55
262 263 9.988350 CCATAGTGCAAAGTAACATAAAAGTAG 57.012 33.333 0.00 0.00 0.00 2.57
263 264 9.727859 TCCATAGTGCAAAGTAACATAAAAGTA 57.272 29.630 0.00 0.00 0.00 2.24
264 265 8.630054 TCCATAGTGCAAAGTAACATAAAAGT 57.370 30.769 0.00 0.00 0.00 2.66
265 266 8.946085 TCTCCATAGTGCAAAGTAACATAAAAG 58.054 33.333 0.00 0.00 0.00 2.27
266 267 8.856153 TCTCCATAGTGCAAAGTAACATAAAA 57.144 30.769 0.00 0.00 0.00 1.52
268 269 9.764363 CTATCTCCATAGTGCAAAGTAACATAA 57.236 33.333 0.00 0.00 0.00 1.90
269 270 8.924303 ACTATCTCCATAGTGCAAAGTAACATA 58.076 33.333 0.00 0.00 43.21 2.29
270 271 7.796054 ACTATCTCCATAGTGCAAAGTAACAT 58.204 34.615 0.00 0.00 43.21 2.71
271 272 7.182817 ACTATCTCCATAGTGCAAAGTAACA 57.817 36.000 0.00 0.00 43.21 2.41
272 273 9.032420 GTTACTATCTCCATAGTGCAAAGTAAC 57.968 37.037 5.12 0.00 44.33 2.50
273 274 8.978472 AGTTACTATCTCCATAGTGCAAAGTAA 58.022 33.333 5.12 0.00 44.33 2.24
274 275 8.534954 AGTTACTATCTCCATAGTGCAAAGTA 57.465 34.615 5.12 0.00 44.33 2.24
275 276 7.425224 AGTTACTATCTCCATAGTGCAAAGT 57.575 36.000 5.12 0.00 44.33 2.66
276 277 9.469807 CTAAGTTACTATCTCCATAGTGCAAAG 57.530 37.037 5.12 0.00 44.33 2.77
277 278 9.197306 TCTAAGTTACTATCTCCATAGTGCAAA 57.803 33.333 5.12 0.00 44.33 3.68
278 279 8.630917 GTCTAAGTTACTATCTCCATAGTGCAA 58.369 37.037 5.12 0.00 44.33 4.08
279 280 7.999545 AGTCTAAGTTACTATCTCCATAGTGCA 59.000 37.037 5.12 0.00 44.33 4.57
280 281 8.398878 AGTCTAAGTTACTATCTCCATAGTGC 57.601 38.462 5.12 0.00 44.33 4.40
285 286 9.563748 GACACTAGTCTAAGTTACTATCTCCAT 57.436 37.037 0.00 0.00 41.64 3.41
286 287 8.546322 TGACACTAGTCTAAGTTACTATCTCCA 58.454 37.037 0.00 0.00 45.20 3.86
287 288 8.961294 TGACACTAGTCTAAGTTACTATCTCC 57.039 38.462 0.00 0.00 45.20 3.71
289 290 9.908747 ACATGACACTAGTCTAAGTTACTATCT 57.091 33.333 0.00 0.00 45.20 1.98
315 316 9.790344 GGGAGTAACTTAGACTAGTGTCATATA 57.210 37.037 0.00 0.00 45.20 0.86
316 317 7.724951 GGGGAGTAACTTAGACTAGTGTCATAT 59.275 40.741 0.00 0.00 45.20 1.78
317 318 7.059156 GGGGAGTAACTTAGACTAGTGTCATA 58.941 42.308 0.00 0.00 45.20 2.15
318 319 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
319 320 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
320 321 5.125257 GTGGGGAGTAACTTAGACTAGTGTC 59.875 48.000 0.00 0.00 43.22 3.67
321 322 5.015515 GTGGGGAGTAACTTAGACTAGTGT 58.984 45.833 0.00 0.00 0.00 3.55
322 323 5.262804 AGTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
323 324 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
324 325 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
325 326 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
326 327 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
327 328 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
328 329 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
329 330 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
330 331 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
331 332 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
332 333 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
333 334 2.434702 CCTGGTCATAGTGGGGAGTAAC 59.565 54.545 0.00 0.00 0.00 2.50
334 335 2.759355 CCTGGTCATAGTGGGGAGTAA 58.241 52.381 0.00 0.00 0.00 2.24
335 336 1.691482 GCCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
336 337 0.983378 GCCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
337 338 0.692419 AGCCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
338 339 0.253160 AAGCCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
339 340 1.507140 TAAGCCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
340 341 2.705658 TCATAAGCCTGGTCATAGTGGG 59.294 50.000 0.00 0.00 0.00 4.61
341 342 4.630644 ATCATAAGCCTGGTCATAGTGG 57.369 45.455 0.00 0.00 0.00 4.00
342 343 8.099537 AGAAATATCATAAGCCTGGTCATAGTG 58.900 37.037 0.00 0.00 0.00 2.74
343 344 8.212259 AGAAATATCATAAGCCTGGTCATAGT 57.788 34.615 0.00 0.00 0.00 2.12
346 347 9.055689 AGATAGAAATATCATAAGCCTGGTCAT 57.944 33.333 0.00 0.00 0.00 3.06
347 348 8.441311 AGATAGAAATATCATAAGCCTGGTCA 57.559 34.615 0.00 0.00 0.00 4.02
348 349 9.160496 CAAGATAGAAATATCATAAGCCTGGTC 57.840 37.037 0.00 0.00 0.00 4.02
349 350 8.664079 ACAAGATAGAAATATCATAAGCCTGGT 58.336 33.333 0.00 0.00 0.00 4.00
350 351 8.944029 CACAAGATAGAAATATCATAAGCCTGG 58.056 37.037 0.00 0.00 0.00 4.45
351 352 9.716531 TCACAAGATAGAAATATCATAAGCCTG 57.283 33.333 0.00 0.00 0.00 4.85
370 371 9.567776 TTATAATGTCTTCTTTGGTTCACAAGA 57.432 29.630 0.00 0.00 40.82 3.02
394 395 6.404708 TGGTGCTACCACGTGTTATAATTTA 58.595 36.000 15.65 0.00 44.79 1.40
395 396 5.247084 TGGTGCTACCACGTGTTATAATTT 58.753 37.500 15.65 0.00 44.79 1.82
407 408 3.593096 GGTTTACTACTGGTGCTACCAC 58.407 50.000 4.16 0.00 44.79 4.16
467 468 7.893124 ACTAAAGACGATCCTAATTCCTACA 57.107 36.000 0.00 0.00 0.00 2.74
483 484 8.727910 CCAAGGACATTACCTAAAACTAAAGAC 58.272 37.037 0.00 0.00 39.62 3.01
539 540 0.032540 CAAAAAGTGAGGCACCCTGC 59.967 55.000 0.00 0.00 44.08 4.85
540 541 1.338020 GACAAAAAGTGAGGCACCCTG 59.662 52.381 0.00 0.00 34.49 4.45
541 542 1.064017 TGACAAAAAGTGAGGCACCCT 60.064 47.619 0.00 0.00 34.49 4.34
542 543 1.398692 TGACAAAAAGTGAGGCACCC 58.601 50.000 0.00 0.00 34.49 4.61
543 544 2.481276 GGTTGACAAAAAGTGAGGCACC 60.481 50.000 0.00 0.00 34.49 5.01
544 545 2.165437 TGGTTGACAAAAAGTGAGGCAC 59.835 45.455 0.00 0.00 34.10 5.01
545 546 2.451490 TGGTTGACAAAAAGTGAGGCA 58.549 42.857 0.00 0.00 0.00 4.75
546 547 3.518634 TTGGTTGACAAAAAGTGAGGC 57.481 42.857 0.00 0.00 35.79 4.70
642 643 8.156553 GCATTGATGATAACTCGATTTACTACG 58.843 37.037 0.00 0.00 0.00 3.51
855 1073 1.303074 CTCACATGTGTGGCTGGCT 60.303 57.895 24.63 0.00 45.65 4.75
902 1120 2.924185 CAGGTGCTCCTCACTTGTG 58.076 57.895 3.81 0.00 44.79 3.33
912 1130 0.739112 CGCTCTTTCTCCAGGTGCTC 60.739 60.000 0.00 0.00 0.00 4.26
973 1191 3.584848 TCTTTCTTTCTTCTCCCCTCTGG 59.415 47.826 0.00 0.00 0.00 3.86
981 1199 6.148645 GGTCCATGACTTCTTTCTTTCTTCTC 59.851 42.308 0.00 0.00 32.47 2.87
998 1216 2.374525 CCCATGTCCGGGTCCATGA 61.375 63.158 22.98 0.00 41.83 3.07
1137 1355 2.503765 TGAATTCAATCACCCTCGCCTA 59.496 45.455 5.45 0.00 0.00 3.93
1293 1511 4.078516 GTTCGCCCCAGTACCGCT 62.079 66.667 0.00 0.00 0.00 5.52
1298 1516 0.759959 TGTTCTTGTTCGCCCCAGTA 59.240 50.000 0.00 0.00 0.00 2.74
1445 1663 3.209812 CCGTCTCTCCGGCGATGA 61.210 66.667 9.30 4.92 41.78 2.92
1475 1693 0.389817 CATCTGCAACGACGAGGGAA 60.390 55.000 0.00 0.00 0.00 3.97
2014 2234 7.907841 TCAATTCAATCATCAATCAAGGGAT 57.092 32.000 0.00 0.00 34.43 3.85
2027 2247 7.569957 CGCGTCATCTTATCATCAATTCAATCA 60.570 37.037 0.00 0.00 0.00 2.57
2028 2248 6.735510 CGCGTCATCTTATCATCAATTCAATC 59.264 38.462 0.00 0.00 0.00 2.67
2029 2249 6.347969 CCGCGTCATCTTATCATCAATTCAAT 60.348 38.462 4.92 0.00 0.00 2.57
2144 2370 4.850680 ACAAAACTGTGGACTTGACCTTA 58.149 39.130 0.00 0.00 0.00 2.69
2260 2488 2.027561 CCGGGATGGGAAAGCGATATTA 60.028 50.000 0.00 0.00 0.00 0.98
2302 2531 3.430862 GCAAATCGAGCGTGGCCA 61.431 61.111 0.00 0.00 0.00 5.36
2549 2778 2.178764 AGGATAGATGCAGACAGGAGGA 59.821 50.000 0.00 0.00 0.00 3.71
2583 2812 8.974060 TTCACTTGTAGTACAAAAGGAGAAAT 57.026 30.769 16.26 0.00 37.69 2.17
2590 2819 8.856490 AAGCATTTTCACTTGTAGTACAAAAG 57.144 30.769 16.26 11.51 37.69 2.27
2602 2834 4.889409 TGTGGAAGAGAAGCATTTTCACTT 59.111 37.500 0.33 0.33 33.24 3.16
2604 2836 4.540824 GTGTGGAAGAGAAGCATTTTCAC 58.459 43.478 0.00 0.00 0.00 3.18
2605 2837 3.250762 CGTGTGGAAGAGAAGCATTTTCA 59.749 43.478 0.00 0.00 0.00 2.69
2606 2838 3.251004 ACGTGTGGAAGAGAAGCATTTTC 59.749 43.478 0.00 0.00 0.00 2.29
2607 2839 3.214328 ACGTGTGGAAGAGAAGCATTTT 58.786 40.909 0.00 0.00 0.00 1.82
2646 2891 3.181495 ACAACAAAAGAATCGTCCGCAAA 60.181 39.130 0.00 0.00 0.00 3.68
2709 2957 2.394632 ACAGATAATACAGCACGGGGA 58.605 47.619 0.00 0.00 0.00 4.81
2727 2975 7.611467 TCCGGATTGAAAACTACTACTACTACA 59.389 37.037 0.00 0.00 0.00 2.74
2731 2979 7.486647 TCATCCGGATTGAAAACTACTACTAC 58.513 38.462 16.19 0.00 0.00 2.73
2733 2981 6.380274 TCTCATCCGGATTGAAAACTACTACT 59.620 38.462 16.19 0.00 0.00 2.57
2735 2983 6.785337 TCTCATCCGGATTGAAAACTACTA 57.215 37.500 16.19 0.00 0.00 1.82
2783 3031 5.409826 GGACCTAGATGTGCAATACTTATGC 59.590 44.000 0.00 0.00 44.08 3.14
2784 3032 6.763355 AGGACCTAGATGTGCAATACTTATG 58.237 40.000 0.00 0.00 0.00 1.90
2785 3033 8.671987 ATAGGACCTAGATGTGCAATACTTAT 57.328 34.615 7.43 0.00 0.00 1.73
2786 3034 9.769677 ATATAGGACCTAGATGTGCAATACTTA 57.230 33.333 7.88 0.00 0.00 2.24
2787 3035 8.671987 ATATAGGACCTAGATGTGCAATACTT 57.328 34.615 7.88 0.00 0.00 2.24
2788 3036 7.895962 TGATATAGGACCTAGATGTGCAATACT 59.104 37.037 13.44 0.00 0.00 2.12
2789 3037 8.067751 TGATATAGGACCTAGATGTGCAATAC 57.932 38.462 13.44 0.00 0.00 1.89
2790 3038 8.844865 ATGATATAGGACCTAGATGTGCAATA 57.155 34.615 13.44 0.00 0.00 1.90
2791 3039 7.746243 ATGATATAGGACCTAGATGTGCAAT 57.254 36.000 13.44 0.00 0.00 3.56
2792 3040 7.235399 TCAATGATATAGGACCTAGATGTGCAA 59.765 37.037 13.44 0.00 0.00 4.08
2793 3041 6.725834 TCAATGATATAGGACCTAGATGTGCA 59.274 38.462 13.44 5.99 0.00 4.57
2794 3042 7.175347 TCAATGATATAGGACCTAGATGTGC 57.825 40.000 13.44 0.32 0.00 4.57
2795 3043 9.199645 AGATCAATGATATAGGACCTAGATGTG 57.800 37.037 13.44 8.59 0.00 3.21
2796 3044 9.781425 AAGATCAATGATATAGGACCTAGATGT 57.219 33.333 13.44 1.49 0.00 3.06
2799 3047 9.397280 CGTAAGATCAATGATATAGGACCTAGA 57.603 37.037 7.43 2.31 43.02 2.43
2800 3048 9.179909 ACGTAAGATCAATGATATAGGACCTAG 57.820 37.037 7.43 0.00 43.62 3.02
2801 3049 9.529823 AACGTAAGATCAATGATATAGGACCTA 57.470 33.333 3.00 3.00 43.62 3.08
2802 3050 8.423906 AACGTAAGATCAATGATATAGGACCT 57.576 34.615 0.00 0.00 43.62 3.85
2846 3094 8.849168 TGAGTGAATCAAGCATAAAGAGAAAAA 58.151 29.630 0.00 0.00 34.02 1.94
2847 3095 8.394971 TGAGTGAATCAAGCATAAAGAGAAAA 57.605 30.769 0.00 0.00 34.02 2.29
2848 3096 7.984422 TGAGTGAATCAAGCATAAAGAGAAA 57.016 32.000 0.00 0.00 34.02 2.52
2849 3097 8.571461 AATGAGTGAATCAAGCATAAAGAGAA 57.429 30.769 0.00 0.00 42.53 2.87
2850 3098 8.571461 AAATGAGTGAATCAAGCATAAAGAGA 57.429 30.769 0.00 0.00 42.53 3.10
2851 3099 9.932699 CTAAATGAGTGAATCAAGCATAAAGAG 57.067 33.333 0.00 0.00 42.53 2.85
2852 3100 9.671279 TCTAAATGAGTGAATCAAGCATAAAGA 57.329 29.630 0.00 4.17 42.53 2.52
2855 3103 9.399797 ACATCTAAATGAGTGAATCAAGCATAA 57.600 29.630 0.00 0.00 42.53 1.90
2856 3104 8.833493 CACATCTAAATGAGTGAATCAAGCATA 58.167 33.333 0.00 0.00 42.53 3.14
2857 3105 7.681304 GCACATCTAAATGAGTGAATCAAGCAT 60.681 37.037 0.00 0.00 42.53 3.79
2858 3106 6.403964 GCACATCTAAATGAGTGAATCAAGCA 60.404 38.462 0.00 0.00 42.53 3.91
2859 3107 5.970023 GCACATCTAAATGAGTGAATCAAGC 59.030 40.000 0.00 0.00 42.53 4.01
2860 3108 7.080353 TGCACATCTAAATGAGTGAATCAAG 57.920 36.000 0.00 0.00 42.53 3.02
2861 3109 7.451501 TTGCACATCTAAATGAGTGAATCAA 57.548 32.000 0.00 0.00 42.53 2.57
2862 3110 7.634671 ATTGCACATCTAAATGAGTGAATCA 57.365 32.000 0.00 0.00 43.70 2.57
2863 3111 9.443283 GTTATTGCACATCTAAATGAGTGAATC 57.557 33.333 0.00 0.00 36.67 2.52
2864 3112 9.182214 AGTTATTGCACATCTAAATGAGTGAAT 57.818 29.630 0.00 0.00 36.67 2.57
2865 3113 8.565896 AGTTATTGCACATCTAAATGAGTGAA 57.434 30.769 0.00 0.00 36.67 3.18
2866 3114 9.317936 CTAGTTATTGCACATCTAAATGAGTGA 57.682 33.333 0.00 0.00 36.67 3.41
2867 3115 9.317936 TCTAGTTATTGCACATCTAAATGAGTG 57.682 33.333 0.00 0.00 36.67 3.51
2868 3116 9.539825 CTCTAGTTATTGCACATCTAAATGAGT 57.460 33.333 0.00 0.00 36.67 3.41
2869 3117 8.494347 GCTCTAGTTATTGCACATCTAAATGAG 58.506 37.037 0.00 0.00 36.67 2.90
2870 3118 7.986889 TGCTCTAGTTATTGCACATCTAAATGA 59.013 33.333 0.00 0.00 36.67 2.57
2871 3119 8.146479 TGCTCTAGTTATTGCACATCTAAATG 57.854 34.615 0.00 0.00 38.93 2.32
2897 3145 9.896645 ATATTATGTTTAGGGCACATCTAGATG 57.103 33.333 27.63 27.63 44.15 2.90
2901 3149 8.792633 GCAAATATTATGTTTAGGGCACATCTA 58.207 33.333 0.00 0.00 36.28 1.98
2902 3150 7.506938 AGCAAATATTATGTTTAGGGCACATCT 59.493 33.333 0.00 0.00 36.28 2.90
2903 3151 7.596248 CAGCAAATATTATGTTTAGGGCACATC 59.404 37.037 0.00 0.00 36.28 3.06
2904 3152 7.436118 CAGCAAATATTATGTTTAGGGCACAT 58.564 34.615 0.00 0.00 38.45 3.21
2905 3153 6.682611 GCAGCAAATATTATGTTTAGGGCACA 60.683 38.462 0.00 0.00 0.00 4.57
2906 3154 5.691754 GCAGCAAATATTATGTTTAGGGCAC 59.308 40.000 0.00 0.00 0.00 5.01
2907 3155 5.507149 CGCAGCAAATATTATGTTTAGGGCA 60.507 40.000 0.00 0.00 0.00 5.36
2908 3156 4.917415 CGCAGCAAATATTATGTTTAGGGC 59.083 41.667 0.00 0.00 0.00 5.19
2909 3157 5.240623 TCCGCAGCAAATATTATGTTTAGGG 59.759 40.000 0.00 0.00 0.00 3.53
2910 3158 6.312399 TCCGCAGCAAATATTATGTTTAGG 57.688 37.500 0.00 0.00 0.00 2.69
2911 3159 5.853282 GCTCCGCAGCAAATATTATGTTTAG 59.147 40.000 0.00 0.00 46.06 1.85
2912 3160 5.757886 GCTCCGCAGCAAATATTATGTTTA 58.242 37.500 0.00 0.00 46.06 2.01
2913 3161 4.610945 GCTCCGCAGCAAATATTATGTTT 58.389 39.130 0.00 0.00 46.06 2.83
2914 3162 4.228912 GCTCCGCAGCAAATATTATGTT 57.771 40.909 0.00 0.00 46.06 2.71
2915 3163 3.904136 GCTCCGCAGCAAATATTATGT 57.096 42.857 0.00 0.00 46.06 2.29
2930 3178 4.098044 TGTCTCCAGAATAAGTAAGCTCCG 59.902 45.833 0.00 0.00 0.00 4.63
2946 3194 3.048600 AGGGCTGCTAATATTGTCTCCA 58.951 45.455 0.00 0.00 0.00 3.86
2947 3195 3.071602 TCAGGGCTGCTAATATTGTCTCC 59.928 47.826 0.00 0.00 0.00 3.71
2966 3214 4.753233 AGGAAATTGATCGAGTCAGTCAG 58.247 43.478 0.00 0.00 38.29 3.51
3030 3279 4.828925 GAGAGCAGCCTCCACCGC 62.829 72.222 0.00 0.00 38.96 5.68
3050 3299 1.757118 CTCCCCGTAGAATCAAGCTGA 59.243 52.381 0.00 0.00 0.00 4.26
3092 3341 4.549668 ACCGTACCAGTGATCCCTAATAA 58.450 43.478 0.00 0.00 0.00 1.40
3108 3357 0.098376 CCAGCGACTAGTGACCGTAC 59.902 60.000 0.00 0.00 0.00 3.67
3135 3384 4.709397 CAGAGAGACTAGGTGAGGTGAAAT 59.291 45.833 0.00 0.00 0.00 2.17
3158 3407 9.110502 GGGAGTATATAATATTAGCCTTGCAAC 57.889 37.037 0.00 0.00 0.00 4.17
3188 3437 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3193 3442 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3195 3444 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3196 3445 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3201 3450 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3205 3454 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
3207 3456 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3208 3457 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3210 3459 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3211 3460 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3212 3461 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3213 3462 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3214 3463 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3218 3467 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3221 3470 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3222 3471 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3223 3472 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3225 3474 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3226 3475 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3227 3476 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3228 3477 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3229 3478 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3231 3480 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3233 3482 4.631377 CAGATTCACTCATTTTGCTCCGTA 59.369 41.667 0.00 0.00 0.00 4.02
3234 3483 3.438087 CAGATTCACTCATTTTGCTCCGT 59.562 43.478 0.00 0.00 0.00 4.69
3235 3484 3.730061 GCAGATTCACTCATTTTGCTCCG 60.730 47.826 0.00 0.00 0.00 4.63
3236 3485 3.192001 TGCAGATTCACTCATTTTGCTCC 59.808 43.478 0.00 0.00 0.00 4.70
3237 3486 4.082895 AGTGCAGATTCACTCATTTTGCTC 60.083 41.667 0.00 0.00 43.28 4.26
3238 3487 3.825014 AGTGCAGATTCACTCATTTTGCT 59.175 39.130 0.00 0.00 43.28 3.91
3239 3488 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
3240 3489 8.578308 TTTAAAGTGCAGATTCACTCATTTTG 57.422 30.769 0.00 0.00 45.77 2.44
3241 3490 9.768662 ATTTTAAAGTGCAGATTCACTCATTTT 57.231 25.926 0.00 0.00 45.77 1.82
3245 3494 9.013229 ACATATTTTAAAGTGCAGATTCACTCA 57.987 29.630 0.00 0.00 45.77 3.41
3246 3495 9.495754 GACATATTTTAAAGTGCAGATTCACTC 57.504 33.333 0.00 0.00 45.77 3.51
3276 3525 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
3277 3526 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
3279 3528 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
3280 3529 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
3281 3530 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
3282 3531 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
3283 3532 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
3310 3559 8.565416 CCTCCGTTTCTAAATACTTGTCTTTTT 58.435 33.333 0.00 0.00 0.00 1.94
3311 3560 7.174426 CCCTCCGTTTCTAAATACTTGTCTTTT 59.826 37.037 0.00 0.00 0.00 2.27
3312 3561 6.653740 CCCTCCGTTTCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
3313 3562 6.013984 TCCCTCCGTTTCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
3314 3563 5.482878 TCCCTCCGTTTCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
3318 3567 7.672122 ATACTCCCTCCGTTTCTAAATACTT 57.328 36.000 0.00 0.00 0.00 2.24
3323 3572 7.909485 AAGATATACTCCCTCCGTTTCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
3324 3573 9.021807 CATAAGATATACTCCCTCCGTTTCTAA 57.978 37.037 0.00 0.00 0.00 2.10
3326 3575 7.011382 ACATAAGATATACTCCCTCCGTTTCT 58.989 38.462 0.00 0.00 0.00 2.52
3328 3577 8.716674 TTACATAAGATATACTCCCTCCGTTT 57.283 34.615 0.00 0.00 0.00 3.60
3384 3634 5.361427 CATCCACACATATAAACGGGTGTA 58.639 41.667 0.00 0.00 42.16 2.90
3425 3676 2.858344 CCTTGAGTTATTGCCTCGTACG 59.142 50.000 9.53 9.53 0.00 3.67
3448 3700 5.855045 AGCACACCTAGCCTATTTATGTAC 58.145 41.667 0.00 0.00 0.00 2.90
3451 3703 4.993584 CAGAGCACACCTAGCCTATTTATG 59.006 45.833 0.00 0.00 0.00 1.90
3601 3854 0.250684 TTGCATGGAGAACGGCAAGA 60.251 50.000 0.00 0.00 40.94 3.02
3650 3908 0.895100 ACCATGCGATGCACCAAACT 60.895 50.000 0.00 0.00 43.04 2.66
3654 3912 1.819208 GCTACCATGCGATGCACCA 60.819 57.895 0.00 0.00 43.04 4.17
3659 3917 1.667236 TTTCCTGCTACCATGCGATG 58.333 50.000 0.00 0.00 35.36 3.84
3870 4128 4.331168 CCACTACTGAAATGCACTAAGCTC 59.669 45.833 0.00 0.00 45.94 4.09
3905 4163 0.755686 TCACAAATGTGCCCAAACCC 59.244 50.000 8.67 0.00 45.25 4.11
3981 4241 2.436417 TCAGCAATAGCCACAAAGGAC 58.564 47.619 0.00 0.00 43.56 3.85
4029 4289 3.181475 TGCCATCGAAGAGATTGGTCTAC 60.181 47.826 2.64 0.00 43.63 2.59
4030 4290 3.031013 TGCCATCGAAGAGATTGGTCTA 58.969 45.455 2.64 0.00 43.63 2.59
4063 4324 4.737765 CACAACCGACCAACTATTTTGTTG 59.262 41.667 0.00 0.00 44.81 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.