AutoCloner

Multiple sequence alignment - TraesCS2A01G271400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G271400	chr2A	100.000	2435	0	0	1	2435	444004090	444006524	0.000000e+00	4497.0
1	TraesCS2A01G271400	chr2A	92.980	1339	57	5	1	1337	487932276	487933579	0.000000e+00	1917.0
2	TraesCS2A01G271400	chr2A	87.064	688	80	7	1752	2435	360947315	360946633	0.000000e+00	769.0
3	TraesCS2A01G271400	chr2A	94.079	152	9	0	1579	1730	487933690	487933841	5.240000e-57	231.0
4	TraesCS2A01G271400	chr2A	91.275	149	4	2	1437	1577	487933575	487933722	6.870000e-46	195.0
5	TraesCS2A01G271400	chr3D	92.190	1434	60	21	1	1406	301339562	301340971	0.000000e+00	1980.0
6	TraesCS2A01G271400	chr3D	89.383	1573	90	26	1	1545	52000266	51998743	0.000000e+00	1908.0
7	TraesCS2A01G271400	chr3D	93.684	190	9	2	1545	1733	51998668	51998481	5.130000e-72	281.0
8	TraesCS2A01G271400	chr3D	98.780	82	1	0	1649	1730	301341217	301341298	1.950000e-31	147.0
9	TraesCS2A01G271400	chr3D	91.954	87	7	0	1405	1491	301341010	301341096	3.290000e-24	122.0
10	TraesCS2A01G271400	chr4D	91.762	1311	54	23	1	1290	417871486	417872763	0.000000e+00	1773.0
11	TraesCS2A01G271400	chr4D	98.780	82	1	0	1649	1730	417873093	417873174	1.950000e-31	147.0
12	TraesCS2A01G271400	chr4D	91.954	87	7	0	1405	1491	417872889	417872975	3.290000e-24	122.0
13	TraesCS2A01G271400	chr4D	90.110	91	4	3	1319	1406	417872762	417872850	1.980000e-21	113.0
14	TraesCS2A01G271400	chr7A	93.563	1072	55	5	1	1071	365399731	365400789	0.000000e+00	1585.0
15	TraesCS2A01G271400	chr7A	87.097	713	80	11	1728	2432	533501966	533501258	0.000000e+00	797.0
16	TraesCS2A01G271400	chr7A	86.415	714	84	12	1731	2435	173054157	173054866	0.000000e+00	769.0
17	TraesCS2A01G271400	chr7A	84.848	693	90	10	1751	2435	85069951	85070636	0.000000e+00	684.0
18	TraesCS2A01G271400	chr7A	95.425	153	7	0	1578	1730	365401040	365401192	6.730000e-61	244.0
19	TraesCS2A01G271400	chr7A	90.196	153	12	1	1173	1325	365400851	365401000	1.910000e-46	196.0
20	TraesCS2A01G271400	chr7A	97.917	48	1	0	1068	1115	365400803	365400850	1.550000e-12	84.2
21	TraesCS2A01G271400	chr7A	100.000	29	0	0	1728	1756	450670626	450670598	1.000000e-03	54.7
22	TraesCS2A01G271400	chrUn	91.553	1172	54	19	1	1130	104493571	104492403	0.000000e+00	1574.0
23	TraesCS2A01G271400	chr5D	86.860	898	67	25	1	885	289068424	289069283	0.000000e+00	957.0
24	TraesCS2A01G271400	chr5D	86.888	694	81	8	1747	2435	318873240	318872552	0.000000e+00	769.0
25	TraesCS2A01G271400	chr5D	89.865	148	8	2	1183	1330	289069325	289069465	1.490000e-42	183.0
26	TraesCS2A01G271400	chr5D	95.833	72	3	0	1324	1395	289069619	289069690	1.530000e-22	117.0
27	TraesCS2A01G271400	chr1D	85.969	898	65	25	1	885	432223141	432223990	0.000000e+00	904.0
28	TraesCS2A01G271400	chr1D	89.865	148	8	2	1183	1330	432224032	432224172	1.490000e-42	183.0
29	TraesCS2A01G271400	chr1D	94.366	71	4	0	1325	1395	432224327	432224397	2.560000e-20	110.0
30	TraesCS2A01G271400	chr2D	88.904	739	56	15	1	724	608192744	608192017	0.000000e+00	887.0
31	TraesCS2A01G271400	chr2D	94.872	156	6	1	1577	1730	583587589	583587744	2.420000e-60	243.0
32	TraesCS2A01G271400	chr2D	87.742	155	10	4	1183	1337	608191841	608191696	3.220000e-39	172.0
33	TraesCS2A01G271400	chr2D	92.373	118	8	1	1096	1213	583587166	583587282	1.500000e-37	167.0
34	TraesCS2A01G271400	chr2D	91.667	96	8	0	921	1016	583586946	583587041	1.520000e-27	134.0
35	TraesCS2A01G271400	chr2D	95.775	71	3	0	1325	1395	608191547	608191477	5.500000e-22	115.0
36	TraesCS2A01G271400	chr2D	95.000	60	3	0	1229	1288	583587339	583587398	7.170000e-16	95.3
37	TraesCS2A01G271400	chr4A	88.108	740	58	9	1	724	229878503	229877778	0.000000e+00	852.0
38	TraesCS2A01G271400	chr4A	83.834	699	92	17	1747	2435	621781946	621782633	0.000000e+00	645.0
39	TraesCS2A01G271400	chr4A	85.303	347	42	3	726	1071	310960383	310960721	1.390000e-92	350.0
40	TraesCS2A01G271400	chr4A	94.656	131	5	1	1602	1730	310961297	310961427	4.110000e-48	202.0
41	TraesCS2A01G271400	chr4A	88.983	118	11	1	1096	1213	310960827	310960942	7.020000e-31	145.0
42	TraesCS2A01G271400	chr4A	88.764	89	9	1	1324	1411	310961138	310961226	9.210000e-20	108.0
43	TraesCS2A01G271400	chr3B	87.701	683	79	5	1756	2435	770105203	770105883	0.000000e+00	791.0
44	TraesCS2A01G271400	chr3A	87.157	693	80	7	1749	2435	316665034	316664345	0.000000e+00	778.0
45	TraesCS2A01G271400	chr5B	88.474	616	58	9	1747	2359	427998832	427998227	0.000000e+00	732.0
46	TraesCS2A01G271400	chr5B	91.195	159	12	1	1575	1733	240704778	240704622	5.270000e-52	215.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G271400	chr2A	444004090	444006524	2434	False	4497.000000	4497	100.000000	1	2435	1	chr2A.!!$F1	2434
1	TraesCS2A01G271400	chr2A	487932276	487933841	1565	False	781.000000	1917	92.778000	1	1730	3	chr2A.!!$F2	1729
2	TraesCS2A01G271400	chr2A	360946633	360947315	682	True	769.000000	769	87.064000	1752	2435	1	chr2A.!!$R1	683
3	TraesCS2A01G271400	chr3D	51998481	52000266	1785	True	1094.500000	1908	91.533500	1	1733	2	chr3D.!!$R1	1732
4	TraesCS2A01G271400	chr3D	301339562	301341298	1736	False	749.666667	1980	94.308000	1	1730	3	chr3D.!!$F1	1729
5	TraesCS2A01G271400	chr4D	417871486	417873174	1688	False	538.750000	1773	93.151500	1	1730	4	chr4D.!!$F1	1729
6	TraesCS2A01G271400	chr7A	533501258	533501966	708	True	797.000000	797	87.097000	1728	2432	1	chr7A.!!$R2	704
7	TraesCS2A01G271400	chr7A	173054157	173054866	709	False	769.000000	769	86.415000	1731	2435	1	chr7A.!!$F2	704
8	TraesCS2A01G271400	chr7A	85069951	85070636	685	False	684.000000	684	84.848000	1751	2435	1	chr7A.!!$F1	684
9	TraesCS2A01G271400	chr7A	365399731	365401192	1461	False	527.300000	1585	94.275250	1	1730	4	chr7A.!!$F3	1729
10	TraesCS2A01G271400	chrUn	104492403	104493571	1168	True	1574.000000	1574	91.553000	1	1130	1	chrUn.!!$R1	1129
11	TraesCS2A01G271400	chr5D	318872552	318873240	688	True	769.000000	769	86.888000	1747	2435	1	chr5D.!!$R1	688
12	TraesCS2A01G271400	chr5D	289068424	289069690	1266	False	419.000000	957	90.852667	1	1395	3	chr5D.!!$F1	1394
13	TraesCS2A01G271400	chr1D	432223141	432224397	1256	False	399.000000	904	90.066667	1	1395	3	chr1D.!!$F1	1394
14	TraesCS2A01G271400	chr2D	608191477	608192744	1267	True	391.333333	887	90.807000	1	1395	3	chr2D.!!$R1	1394
15	TraesCS2A01G271400	chr4A	229877778	229878503	725	True	852.000000	852	88.108000	1	724	1	chr4A.!!$R1	723
16	TraesCS2A01G271400	chr4A	621781946	621782633	687	False	645.000000	645	83.834000	1747	2435	1	chr4A.!!$F1	688
17	TraesCS2A01G271400	chr4A	310960383	310961427	1044	False	201.250000	350	89.426500	726	1730	4	chr4A.!!$F2	1004
18	TraesCS2A01G271400	chr3B	770105203	770105883	680	False	791.000000	791	87.701000	1756	2435	1	chr3B.!!$F1	679
19	TraesCS2A01G271400	chr3A	316664345	316665034	689	True	778.000000	778	87.157000	1749	2435	1	chr3A.!!$R1	686
20	TraesCS2A01G271400	chr5B	427998227	427998832	605	True	732.000000	732	88.474000	1747	2359	1	chr5B.!!$R2	612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
170	173	0.039035	GGTACCCCAATGCAACCAGA	59.961	55.0	0.0	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1478	1845	0.603065	GCCAAAACTCGCAAGGGAAT	59.397	50.0	0.0	0.0	44.69	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	129	5.622007	CGCCTTAATCATGACAACCAACATT	60.622	40.000	0.00	0.00	0.00	2.71
170	173	0.039035	GGTACCCCAATGCAACCAGA	59.961	55.000	0.00	0.00	0.00	3.86
197	200	1.674441	ACTCGACGTCTGACACTTTGA	59.326	47.619	14.70	0.00	0.00	2.69
466	469	1.676006	TCAGCTTCGCACTATCATCGA	59.324	47.619	0.00	0.00	0.00	3.59
494	498	7.174426	TGAAAGAGTAGTTGTAGATCGAAGTGA	59.826	37.037	0.00	0.00	0.00	3.41
575	579	8.831715	ATTTTATTGGAGAATGTTGGTTGTTC	57.168	30.769	0.00	0.00	0.00	3.18
582	586	5.048294	GGAGAATGTTGGTTGTTCGGTTTAT	60.048	40.000	0.00	0.00	0.00	1.40
586	590	8.581578	AGAATGTTGGTTGTTCGGTTTATAAAT	58.418	29.630	0.31	0.00	0.00	1.40
647	676	8.914654	CCAAACATAAACATTTCACATACACAG	58.085	33.333	0.00	0.00	0.00	3.66
690	725	2.497675	ACAGATACGCACACATCTTCCT	59.502	45.455	0.00	0.00	28.88	3.36
772	808	5.236478	TGTTTCTTCTGAGTAAAAAGCCTCG	59.764	40.000	0.00	0.00	0.00	4.63
774	810	3.323979	TCTTCTGAGTAAAAAGCCTCGGT	59.676	43.478	0.00	0.00	0.00	4.69
778	814	2.367567	TGAGTAAAAAGCCTCGGTCAGT	59.632	45.455	0.00	0.00	0.00	3.41
805	841	4.424061	AACACACACCGATCATTCATTG	57.576	40.909	0.00	0.00	0.00	2.82
885	954	2.148916	ACACACACCATCACGTGTAG	57.851	50.000	16.51	9.15	45.14	2.74
886	955	1.411246	ACACACACCATCACGTGTAGT	59.589	47.619	16.51	8.67	45.14	2.73
887	956	2.058798	CACACACCATCACGTGTAGTC	58.941	52.381	16.51	0.00	45.14	2.59
888	957	1.335597	ACACACCATCACGTGTAGTCG	60.336	52.381	16.51	5.52	45.14	4.18
889	958	0.956633	ACACCATCACGTGTAGTCGT	59.043	50.000	16.51	6.17	45.08	4.34
898	967	0.110056	CGTGTAGTCGTGTACGCCTT	60.110	55.000	0.00	0.00	39.60	4.35
1004	1073	1.043673	AGTAGGAGTCCGGCCATGAC	61.044	60.000	13.29	13.29	0.00	3.06
1036	1105	2.777094	GCTCAAAAAGCCAGAGACTCT	58.223	47.619	0.00	0.00	45.92	3.24
1037	1106	3.145286	GCTCAAAAAGCCAGAGACTCTT	58.855	45.455	0.98	0.00	45.92	2.85
1178	1330	3.965258	ATGCCTGCGTGGAACCCA	61.965	61.111	0.00	0.00	38.35	4.51
1220	1372	3.872696	CCATCTGGCGCCATAATACATA	58.127	45.455	32.87	2.72	0.00	2.29
1401	1730	4.131088	GTGGGTCCTCCTCGACGC	62.131	72.222	0.00	0.00	43.88	5.19
1423	1790	1.898574	CAGCTTGGGCCTTCAACGT	60.899	57.895	4.53	0.00	39.73	3.99
1432	1799	1.403780	GGCCTTCAACGTCGTCTGTAT	60.404	52.381	0.00	0.00	0.00	2.29
1433	1800	2.159338	GGCCTTCAACGTCGTCTGTATA	60.159	50.000	0.00	0.00	0.00	1.47
1440	1807	1.783031	CGTCGTCTGTATAGCCGGCT	61.783	60.000	34.85	34.85	25.75	5.52
1478	1845	5.339200	CCCCTGCTAGTTAATTCTCTTTCCA	60.339	44.000	0.00	0.00	0.00	3.53
1646	2111	7.278868	GGTAAGAAGGGCATCTATAAATCATCG	59.721	40.741	0.00	0.00	0.00	3.84
1921	2396	6.350445	CCAGCTAACTCTTTTATGTGCCAAAT	60.350	38.462	0.00	0.00	0.00	2.32
1923	2398	5.807011	GCTAACTCTTTTATGTGCCAAATGG	59.193	40.000	0.00	0.00	38.53	3.16
1972	2447	3.327757	ACTTCTCCTTTGCATCTACACCA	59.672	43.478	0.00	0.00	0.00	4.17
1973	2448	3.616956	TCTCCTTTGCATCTACACCAG	57.383	47.619	0.00	0.00	0.00	4.00
2043	2525	6.485984	TCGGACCTGAGTATCTCATAACTAAC	59.514	42.308	0.00	0.00	39.92	2.34
2049	2531	8.247562	CCTGAGTATCTCATAACTAACCTATGC	58.752	40.741	0.00	0.00	39.92	3.14
2085	2575	9.301153	CAGCTCACTTAAATTACTTTTGTTGTT	57.699	29.630	0.00	0.00	0.00	2.83
2138	2629	5.357032	GCATGTTGGTTATAGTAGGCAGTTT	59.643	40.000	0.00	0.00	0.00	2.66
2203	2694	3.505293	GGTAGTAGGTCTCGTTGTCTTGT	59.495	47.826	0.00	0.00	0.00	3.16
2217	2708	4.715534	TGTCTTGTTCCCATTTCTACCA	57.284	40.909	0.00	0.00	0.00	3.25
2223	2714	3.332187	TGTTCCCATTTCTACCATGTCCA	59.668	43.478	0.00	0.00	0.00	4.02
2242	2733	8.485392	CATGTCCAAGGAAAATAAATAATGGGT	58.515	33.333	0.00	0.00	0.00	4.51
2316	2808	5.324409	TGGTAGCATGTTTCTCTCCATTTT	58.676	37.500	0.00	0.00	0.00	1.82
2320	2812	6.521151	AGCATGTTTCTCTCCATTTTAAGG	57.479	37.500	0.00	0.00	0.00	2.69
2321	2813	6.012745	AGCATGTTTCTCTCCATTTTAAGGT	58.987	36.000	0.00	0.00	0.00	3.50
2324	2816	7.533426	CATGTTTCTCTCCATTTTAAGGTCAG	58.467	38.462	0.00	0.00	0.00	3.51
2336	2829	3.414700	GGTCAGGAGCACGCAACG	61.415	66.667	0.00	0.00	0.00	4.10
2359	2852	0.179089	GCATGTCATCGAGCTCCTGT	60.179	55.000	8.47	0.00	0.00	4.00
2369	2862	5.536538	TCATCGAGCTCCTGTACTTGATAAT	59.463	40.000	8.47	0.00	35.29	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
65	68	8.726870	TTCAAGTAACCTTCCCTATTTATTCG	57.273	34.615	0.00	0.00	0.00	3.34
126	129	5.136068	TGCCCTATTAACCATCCAATCAA	57.864	39.130	0.00	0.00	0.00	2.57
170	173	4.215827	AGTGTCAGACGTCGAGTTTAATCT	59.784	41.667	10.46	0.00	0.00	2.40
466	469	8.524487	ACTTCGATCTACAACTACTCTTTCATT	58.476	33.333	0.00	0.00	0.00	2.57
647	676	5.586243	TGTTTTAGACAATGAGCCTATCTGC	59.414	40.000	0.00	0.00	34.69	4.26
772	808	2.870411	GGTGTGTGTTTACTGACTGACC	59.130	50.000	0.00	0.00	0.00	4.02
774	810	2.427812	TCGGTGTGTGTTTACTGACTGA	59.572	45.455	0.00	0.00	0.00	3.41
778	814	3.737032	TGATCGGTGTGTGTTTACTGA	57.263	42.857	0.00	0.00	36.69	3.41
805	841	2.545946	GCCGCTCAACCTCTGATTTATC	59.454	50.000	0.00	0.00	32.14	1.75
886	955	0.388134	GAGAAGCAAGGCGTACACGA	60.388	55.000	5.84	0.00	43.02	4.35
887	956	0.388649	AGAGAAGCAAGGCGTACACG	60.389	55.000	0.00	0.00	43.27	4.49
888	957	1.071605	CAGAGAAGCAAGGCGTACAC	58.928	55.000	0.00	0.00	0.00	2.90
889	958	0.037326	CCAGAGAAGCAAGGCGTACA	60.037	55.000	0.00	0.00	0.00	2.90
890	959	1.362406	GCCAGAGAAGCAAGGCGTAC	61.362	60.000	0.00	0.00	37.41	3.67
891	960	1.079127	GCCAGAGAAGCAAGGCGTA	60.079	57.895	0.00	0.00	37.41	4.42
892	961	2.359230	GCCAGAGAAGCAAGGCGT	60.359	61.111	0.00	0.00	37.41	5.68
898	967	1.134189	CATCAGGATGCCAGAGAAGCA	60.134	52.381	0.00	0.00	45.94	3.91
919	988	0.549950	AAGCAGATGTGGATGGGAGG	59.450	55.000	0.00	0.00	0.00	4.30
1036	1105	1.013596	CAGTCGTTGGCTGTTGTCAA	58.986	50.000	0.00	0.00	35.16	3.18
1037	1106	1.436195	GCAGTCGTTGGCTGTTGTCA	61.436	55.000	0.00	0.00	36.42	3.58
1162	1314	3.918253	GATGGGTTCCACGCAGGCA	62.918	63.158	0.00	0.00	44.34	4.75
1220	1372	1.215647	GTCGGAGATGTTGGCGAGT	59.784	57.895	0.00	0.00	40.67	4.18
1297	1453	2.512515	GCTCAAAGCTCGGGCGAT	60.513	61.111	0.00	0.00	44.37	4.58
1400	1729	3.366739	GAAGGCCCAAGCTGCATGC	62.367	63.158	11.82	11.82	43.29	4.06
1401	1730	1.537814	TTGAAGGCCCAAGCTGCATG	61.538	55.000	0.00	0.00	39.73	4.06
1432	1799	1.003839	CCTGAAACACAGCCGGCTA	60.004	57.895	32.30	11.18	44.52	3.93
1433	1800	2.281761	CCTGAAACACAGCCGGCT	60.282	61.111	27.08	27.08	44.52	5.52
1478	1845	0.603065	GCCAAAACTCGCAAGGGAAT	59.397	50.000	0.00	0.00	44.69	3.01
1525	1906	3.347077	AACAGGGAGATGCAAGAGAAG	57.653	47.619	0.00	0.00	0.00	2.85
1538	1919	3.709141	CCAAAGGAAAGGAAAAACAGGGA	59.291	43.478	0.00	0.00	0.00	4.20
1583	2048	9.029368	AGGAAGGAATTATCTTTGAAGGAAAAG	57.971	33.333	0.00	0.00	38.31	2.27
1584	2049	8.956446	AGGAAGGAATTATCTTTGAAGGAAAA	57.044	30.769	0.00	0.00	0.00	2.29
1593	2058	9.679661	GAAGAAGAGAAGGAAGGAATTATCTTT	57.320	33.333	0.00	0.00	37.16	2.52
1801	2273	1.250840	ATGAAAAGCGGGTGGAAGGC	61.251	55.000	0.00	0.00	0.00	4.35
1921	2396	8.445275	ACGATAAAAGAATATGTAACATGCCA	57.555	30.769	0.00	0.00	0.00	4.92
1953	2428	3.173151	TCTGGTGTAGATGCAAAGGAGA	58.827	45.455	0.00	0.00	0.00	3.71
2030	2512	5.162637	TGGGGCATAGGTTAGTTATGAGAT	58.837	41.667	0.00	0.00	31.59	2.75
2043	2525	1.145738	AGCTGGTTAATGGGGCATAGG	59.854	52.381	0.00	0.00	0.00	2.57
2049	2531	2.514458	AAGTGAGCTGGTTAATGGGG	57.486	50.000	0.00	0.00	0.00	4.96
2158	2649	6.042093	ACCATAATGGAGAGAGAAAATAGCGA	59.958	38.462	0.00	0.00	40.96	4.93
2203	2694	4.569653	CCTTGGACATGGTAGAAATGGGAA	60.570	45.833	0.00	0.00	0.00	3.97
2217	2708	8.622572	ACCCATTATTTATTTTCCTTGGACAT	57.377	30.769	0.00	0.00	0.00	3.06
2316	2808	0.320421	GTTGCGTGCTCCTGACCTTA	60.320	55.000	0.00	0.00	0.00	2.69
2320	2812	1.291877	ATTCGTTGCGTGCTCCTGAC	61.292	55.000	0.00	0.00	0.00	3.51
2321	2813	1.005037	ATTCGTTGCGTGCTCCTGA	60.005	52.632	0.00	0.00	0.00	3.86
2324	2816	2.202349	GCATTCGTTGCGTGCTCC	60.202	61.111	0.00	0.00	42.54	4.70
2336	2829	1.530293	GGAGCTCGATGACATGCATTC	59.470	52.381	7.83	0.00	37.34	2.67
2351	2844	7.439108	ACCTAAATTATCAAGTACAGGAGCT	57.561	36.000	0.00	0.00	0.00	4.09
2359	2852	9.483489	TGGTCTCTGTACCTAAATTATCAAGTA	57.517	33.333	0.00	0.00	40.44	2.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.