Multiple sequence alignment - TraesCS2A01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G271300 chr2A 100.000 2924 0 0 1 2924 443643995 443646918 0.000000e+00 5400.0
1 TraesCS2A01G271300 chr2A 80.952 168 23 9 2278 2439 241975688 241975852 1.100000e-24 124.0
2 TraesCS2A01G271300 chr2A 89.000 100 9 2 2340 2439 70985599 70985696 3.960000e-24 122.0
3 TraesCS2A01G271300 chr2D 95.439 1798 31 19 534 2296 333646193 333647974 0.000000e+00 2819.0
4 TraesCS2A01G271300 chr2D 89.781 411 38 2 2517 2924 333648156 333648565 9.280000e-145 523.0
5 TraesCS2A01G271300 chr2D 82.849 344 54 5 2582 2922 304776598 304776939 1.320000e-78 303.0
6 TraesCS2A01G271300 chr2D 90.698 86 8 0 2270 2355 193393261 193393176 6.620000e-22 115.0
7 TraesCS2A01G271300 chr2B 94.272 1641 37 19 484 2090 401814944 401816561 0.000000e+00 2457.0
8 TraesCS2A01G271300 chr2B 86.885 488 56 3 2440 2924 401818515 401818997 9.220000e-150 540.0
9 TraesCS2A01G271300 chr2B 89.963 269 21 6 2093 2355 401818169 401818437 2.790000e-90 342.0
10 TraesCS2A01G271300 chr2B 80.174 459 70 13 2466 2920 506051504 506051945 1.010000e-84 324.0
11 TraesCS2A01G271300 chr2B 84.921 126 16 3 2316 2439 175068536 175068660 1.100000e-24 124.0
12 TraesCS2A01G271300 chr2B 87.654 81 8 1 2277 2355 144436038 144435958 3.100000e-15 93.5
13 TraesCS2A01G271300 chr3D 84.814 349 48 4 1000 1347 46471865 46471521 2.160000e-91 346.0
14 TraesCS2A01G271300 chr3D 86.765 68 9 0 2288 2355 327720719 327720786 3.120000e-10 76.8
15 TraesCS2A01G271300 chr3B 84.527 349 49 4 1000 1347 72478138 72477794 1.000000e-89 340.0
16 TraesCS2A01G271300 chr7D 80.000 460 72 14 2466 2920 49389143 49389587 3.640000e-84 322.0
17 TraesCS2A01G271300 chr7D 79.266 463 73 12 2466 2922 384041651 384041206 4.740000e-78 302.0
18 TraesCS2A01G271300 chr7D 77.241 435 81 12 2490 2922 623832192 623832610 3.770000e-59 239.0
19 TraesCS2A01G271300 chr7D 91.398 93 6 2 2354 2446 46234115 46234025 3.060000e-25 126.0
20 TraesCS2A01G271300 chr3A 83.381 349 53 5 1000 1347 57886850 57886506 4.700000e-83 318.0
21 TraesCS2A01G271300 chr5D 83.680 337 50 4 2588 2922 331805591 331805258 2.190000e-81 313.0
22 TraesCS2A01G271300 chr4D 81.842 380 54 13 993 1364 504178235 504177863 3.660000e-79 305.0
23 TraesCS2A01G271300 chr4D 81.269 331 55 6 983 1311 504115855 504115530 8.040000e-66 261.0
24 TraesCS2A01G271300 chr4D 90.526 95 7 2 2343 2437 25374559 25374467 1.100000e-24 124.0
25 TraesCS2A01G271300 chr4B 81.698 377 59 10 993 1364 650706892 650706521 3.660000e-79 305.0
26 TraesCS2A01G271300 chr4B 90.722 97 7 2 2343 2439 551728944 551728850 8.510000e-26 128.0
27 TraesCS2A01G271300 chr7B 83.235 340 46 9 2588 2922 589704806 589705139 4.740000e-78 302.0
28 TraesCS2A01G271300 chr7B 89.691 97 8 2 2343 2439 382332073 382331979 3.960000e-24 122.0
29 TraesCS2A01G271300 chr1B 82.196 337 53 6 2589 2922 398861007 398861339 1.720000e-72 283.0
30 TraesCS2A01G271300 chr1D 82.517 286 48 2 1049 1333 453204876 453205160 1.740000e-62 250.0
31 TraesCS2A01G271300 chr7A 89.000 100 9 2 2340 2439 409271731 409271828 3.960000e-24 122.0
32 TraesCS2A01G271300 chr6A 80.247 162 25 7 2280 2439 117434176 117434332 6.620000e-22 115.0
33 TraesCS2A01G271300 chr4A 85.897 78 11 0 2278 2355 739152445 739152522 1.870000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G271300 chr2A 443643995 443646918 2923 False 5400 5400 100.000000 1 2924 1 chr2A.!!$F3 2923
1 TraesCS2A01G271300 chr2D 333646193 333648565 2372 False 1671 2819 92.610000 534 2924 2 chr2D.!!$F2 2390
2 TraesCS2A01G271300 chr2B 401814944 401818997 4053 False 1113 2457 90.373333 484 2924 3 chr2B.!!$F3 2440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.107456 CCTGATCTGGATGAACCCCG 59.893 60.0 13.18 0.0 38.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 3745 0.240945 CGGACTGACAAAATGCACCC 59.759 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.037858 GTGGCTCAAAATGGATCATCAC 57.962 45.455 0.00 0.00 0.00 3.06
22 23 3.698040 GTGGCTCAAAATGGATCATCACT 59.302 43.478 0.00 0.00 0.00 3.41
23 24 4.883585 GTGGCTCAAAATGGATCATCACTA 59.116 41.667 0.00 0.00 0.00 2.74
24 25 5.533903 GTGGCTCAAAATGGATCATCACTAT 59.466 40.000 0.00 0.00 0.00 2.12
25 26 6.040166 GTGGCTCAAAATGGATCATCACTATT 59.960 38.462 0.00 0.00 0.00 1.73
26 27 6.263842 TGGCTCAAAATGGATCATCACTATTC 59.736 38.462 0.00 0.00 0.00 1.75
27 28 6.263842 GGCTCAAAATGGATCATCACTATTCA 59.736 38.462 0.00 0.00 0.00 2.57
28 29 7.039923 GGCTCAAAATGGATCATCACTATTCAT 60.040 37.037 0.00 0.00 0.00 2.57
29 30 8.021973 GCTCAAAATGGATCATCACTATTCATC 58.978 37.037 0.00 0.00 0.00 2.92
30 31 9.286170 CTCAAAATGGATCATCACTATTCATCT 57.714 33.333 0.00 0.00 0.00 2.90
31 32 9.636789 TCAAAATGGATCATCACTATTCATCTT 57.363 29.630 0.00 0.00 0.00 2.40
40 41 8.964476 TCATCACTATTCATCTTTAACTTCCC 57.036 34.615 0.00 0.00 0.00 3.97
41 42 8.772250 TCATCACTATTCATCTTTAACTTCCCT 58.228 33.333 0.00 0.00 0.00 4.20
50 51 8.846423 TCATCTTTAACTTCCCTATCTCTTCT 57.154 34.615 0.00 0.00 0.00 2.85
51 52 9.273137 TCATCTTTAACTTCCCTATCTCTTCTT 57.727 33.333 0.00 0.00 0.00 2.52
52 53 9.541143 CATCTTTAACTTCCCTATCTCTTCTTC 57.459 37.037 0.00 0.00 0.00 2.87
53 54 8.080363 TCTTTAACTTCCCTATCTCTTCTTCC 57.920 38.462 0.00 0.00 0.00 3.46
54 55 7.901861 TCTTTAACTTCCCTATCTCTTCTTCCT 59.098 37.037 0.00 0.00 0.00 3.36
55 56 7.663043 TTAACTTCCCTATCTCTTCTTCCTC 57.337 40.000 0.00 0.00 0.00 3.71
56 57 5.213868 ACTTCCCTATCTCTTCTTCCTCA 57.786 43.478 0.00 0.00 0.00 3.86
57 58 5.787327 ACTTCCCTATCTCTTCTTCCTCAT 58.213 41.667 0.00 0.00 0.00 2.90
58 59 5.602145 ACTTCCCTATCTCTTCTTCCTCATG 59.398 44.000 0.00 0.00 0.00 3.07
59 60 5.149584 TCCCTATCTCTTCTTCCTCATGT 57.850 43.478 0.00 0.00 0.00 3.21
60 61 6.281190 TCCCTATCTCTTCTTCCTCATGTA 57.719 41.667 0.00 0.00 0.00 2.29
61 62 6.071984 TCCCTATCTCTTCTTCCTCATGTAC 58.928 44.000 0.00 0.00 0.00 2.90
62 63 5.835819 CCCTATCTCTTCTTCCTCATGTACA 59.164 44.000 0.00 0.00 0.00 2.90
63 64 6.325028 CCCTATCTCTTCTTCCTCATGTACAA 59.675 42.308 0.00 0.00 0.00 2.41
64 65 7.206687 CCTATCTCTTCTTCCTCATGTACAAC 58.793 42.308 0.00 0.00 0.00 3.32
65 66 6.865834 ATCTCTTCTTCCTCATGTACAACT 57.134 37.500 0.00 0.00 0.00 3.16
66 67 6.274157 TCTCTTCTTCCTCATGTACAACTC 57.726 41.667 0.00 0.00 0.00 3.01
67 68 6.013379 TCTCTTCTTCCTCATGTACAACTCT 58.987 40.000 0.00 0.00 0.00 3.24
68 69 7.175797 TCTCTTCTTCCTCATGTACAACTCTA 58.824 38.462 0.00 0.00 0.00 2.43
69 70 7.338196 TCTCTTCTTCCTCATGTACAACTCTAG 59.662 40.741 0.00 0.00 0.00 2.43
70 71 5.584253 TCTTCCTCATGTACAACTCTAGC 57.416 43.478 0.00 0.00 0.00 3.42
71 72 5.265191 TCTTCCTCATGTACAACTCTAGCT 58.735 41.667 0.00 0.00 0.00 3.32
72 73 6.424032 TCTTCCTCATGTACAACTCTAGCTA 58.576 40.000 0.00 0.00 0.00 3.32
73 74 6.544197 TCTTCCTCATGTACAACTCTAGCTAG 59.456 42.308 15.01 15.01 0.00 3.42
74 75 4.580995 TCCTCATGTACAACTCTAGCTAGC 59.419 45.833 16.35 6.62 0.00 3.42
75 76 4.261825 CCTCATGTACAACTCTAGCTAGCC 60.262 50.000 16.35 0.00 0.00 3.93
76 77 3.315470 TCATGTACAACTCTAGCTAGCCG 59.685 47.826 16.35 11.52 0.00 5.52
77 78 1.404391 TGTACAACTCTAGCTAGCCGC 59.596 52.381 16.35 2.74 39.57 6.53
78 79 1.030457 TACAACTCTAGCTAGCCGCC 58.970 55.000 16.35 0.00 40.39 6.13
79 80 1.068250 CAACTCTAGCTAGCCGCCC 59.932 63.158 16.35 0.00 40.39 6.13
80 81 2.134933 AACTCTAGCTAGCCGCCCC 61.135 63.158 16.35 0.00 40.39 5.80
81 82 2.521950 CTCTAGCTAGCCGCCCCA 60.522 66.667 16.35 0.00 40.39 4.96
82 83 2.042333 TCTAGCTAGCCGCCCCAA 60.042 61.111 16.35 0.00 40.39 4.12
83 84 2.109181 CTAGCTAGCCGCCCCAAC 59.891 66.667 12.13 0.00 40.39 3.77
84 85 3.462199 CTAGCTAGCCGCCCCAACC 62.462 68.421 12.13 0.00 40.39 3.77
86 87 4.506255 GCTAGCCGCCCCAACCAT 62.506 66.667 2.29 0.00 0.00 3.55
87 88 2.203209 CTAGCCGCCCCAACCATC 60.203 66.667 0.00 0.00 0.00 3.51
88 89 4.169696 TAGCCGCCCCAACCATCG 62.170 66.667 0.00 0.00 0.00 3.84
94 95 4.506255 CCCCAACCATCGGCCTCC 62.506 72.222 0.00 0.00 0.00 4.30
95 96 3.727258 CCCAACCATCGGCCTCCA 61.727 66.667 0.00 0.00 0.00 3.86
96 97 2.438434 CCAACCATCGGCCTCCAC 60.438 66.667 0.00 0.00 0.00 4.02
97 98 2.438434 CAACCATCGGCCTCCACC 60.438 66.667 0.00 0.00 0.00 4.61
98 99 2.933287 AACCATCGGCCTCCACCA 60.933 61.111 0.00 0.00 0.00 4.17
99 100 2.308722 AACCATCGGCCTCCACCAT 61.309 57.895 0.00 0.00 0.00 3.55
100 101 2.203252 CCATCGGCCTCCACCATG 60.203 66.667 0.00 0.00 0.00 3.66
101 102 2.903855 CATCGGCCTCCACCATGC 60.904 66.667 0.00 0.00 0.00 4.06
102 103 4.552365 ATCGGCCTCCACCATGCG 62.552 66.667 0.00 0.00 0.00 4.73
104 105 4.155733 CGGCCTCCACCATGCGTA 62.156 66.667 0.00 0.00 0.00 4.42
105 106 2.203070 GGCCTCCACCATGCGTAG 60.203 66.667 0.00 0.00 0.00 3.51
106 107 2.731571 GGCCTCCACCATGCGTAGA 61.732 63.158 0.00 0.00 0.00 2.59
107 108 1.521681 GCCTCCACCATGCGTAGAC 60.522 63.158 0.00 0.00 0.00 2.59
108 109 1.226974 CCTCCACCATGCGTAGACG 60.227 63.158 0.00 0.00 43.27 4.18
109 110 1.663379 CCTCCACCATGCGTAGACGA 61.663 60.000 6.19 0.00 43.02 4.20
110 111 0.525668 CTCCACCATGCGTAGACGAC 60.526 60.000 6.19 0.00 43.02 4.34
119 120 3.028969 GTAGACGACGGGCGCTAT 58.971 61.111 7.64 0.00 46.04 2.97
120 121 1.082235 GTAGACGACGGGCGCTATC 60.082 63.158 7.64 1.27 46.04 2.08
121 122 1.524393 TAGACGACGGGCGCTATCA 60.524 57.895 7.64 0.00 46.04 2.15
122 123 1.779025 TAGACGACGGGCGCTATCAC 61.779 60.000 7.64 0.30 46.04 3.06
123 124 4.547905 ACGACGGGCGCTATCACG 62.548 66.667 7.64 9.99 46.04 4.35
124 125 4.547905 CGACGGGCGCTATCACGT 62.548 66.667 7.64 10.77 42.88 4.49
125 126 2.954868 GACGGGCGCTATCACGTG 60.955 66.667 9.94 9.94 39.95 4.49
131 132 2.885644 CGCTATCACGTGCCGCTT 60.886 61.111 11.67 0.00 0.00 4.68
132 133 2.860628 CGCTATCACGTGCCGCTTC 61.861 63.158 11.67 0.00 0.00 3.86
133 134 1.809619 GCTATCACGTGCCGCTTCA 60.810 57.895 11.67 0.00 0.00 3.02
134 135 1.999051 CTATCACGTGCCGCTTCAC 59.001 57.895 11.67 0.00 0.00 3.18
135 136 0.735978 CTATCACGTGCCGCTTCACA 60.736 55.000 11.67 0.00 36.80 3.58
136 137 0.319986 TATCACGTGCCGCTTCACAA 60.320 50.000 11.67 0.00 36.80 3.33
137 138 1.841663 ATCACGTGCCGCTTCACAAC 61.842 55.000 11.67 0.00 36.80 3.32
138 139 2.203015 ACGTGCCGCTTCACAACT 60.203 55.556 0.00 0.00 36.80 3.16
139 140 2.249309 CGTGCCGCTTCACAACTG 59.751 61.111 6.12 0.00 36.80 3.16
140 141 2.050985 GTGCCGCTTCACAACTGC 60.051 61.111 0.00 0.00 36.97 4.40
144 145 3.349006 CGCTTCACAACTGCGCCT 61.349 61.111 4.18 0.00 43.08 5.52
145 146 2.558313 GCTTCACAACTGCGCCTC 59.442 61.111 4.18 0.00 0.00 4.70
146 147 2.970974 GCTTCACAACTGCGCCTCC 61.971 63.158 4.18 0.00 0.00 4.30
147 148 2.281484 TTCACAACTGCGCCTCCC 60.281 61.111 4.18 0.00 0.00 4.30
148 149 3.842925 TTCACAACTGCGCCTCCCC 62.843 63.158 4.18 0.00 0.00 4.81
164 165 4.619227 CCCCTCACACGCCGTTGT 62.619 66.667 0.00 0.00 0.00 3.32
165 166 2.590575 CCCTCACACGCCGTTGTT 60.591 61.111 0.00 0.00 0.00 2.83
166 167 1.301087 CCCTCACACGCCGTTGTTA 60.301 57.895 0.00 0.00 0.00 2.41
167 168 1.289109 CCCTCACACGCCGTTGTTAG 61.289 60.000 0.00 0.00 0.00 2.34
168 169 1.491563 CTCACACGCCGTTGTTAGC 59.508 57.895 0.00 0.00 0.00 3.09
169 170 1.897398 CTCACACGCCGTTGTTAGCC 61.897 60.000 0.00 0.00 0.00 3.93
170 171 2.109387 ACACGCCGTTGTTAGCCA 59.891 55.556 0.00 0.00 0.00 4.75
171 172 2.248835 ACACGCCGTTGTTAGCCAC 61.249 57.895 0.00 0.00 0.00 5.01
172 173 2.667199 ACGCCGTTGTTAGCCACC 60.667 61.111 0.00 0.00 0.00 4.61
173 174 2.666862 CGCCGTTGTTAGCCACCA 60.667 61.111 0.00 0.00 0.00 4.17
174 175 2.951458 GCCGTTGTTAGCCACCAC 59.049 61.111 0.00 0.00 0.00 4.16
175 176 1.894756 GCCGTTGTTAGCCACCACA 60.895 57.895 0.00 0.00 0.00 4.17
176 177 1.946267 CCGTTGTTAGCCACCACAC 59.054 57.895 0.00 0.00 0.00 3.82
177 178 0.534203 CCGTTGTTAGCCACCACACT 60.534 55.000 0.00 0.00 0.00 3.55
178 179 0.586319 CGTTGTTAGCCACCACACTG 59.414 55.000 0.00 0.00 0.00 3.66
179 180 1.808512 CGTTGTTAGCCACCACACTGA 60.809 52.381 0.00 0.00 0.00 3.41
180 181 1.602377 GTTGTTAGCCACCACACTGAC 59.398 52.381 0.00 0.00 0.00 3.51
181 182 0.107831 TGTTAGCCACCACACTGACC 59.892 55.000 0.00 0.00 0.00 4.02
182 183 0.605589 GTTAGCCACCACACTGACCC 60.606 60.000 0.00 0.00 0.00 4.46
183 184 1.774894 TTAGCCACCACACTGACCCC 61.775 60.000 0.00 0.00 0.00 4.95
184 185 2.689573 TAGCCACCACACTGACCCCT 62.690 60.000 0.00 0.00 0.00 4.79
185 186 2.750350 CCACCACACTGACCCCTC 59.250 66.667 0.00 0.00 0.00 4.30
186 187 1.843376 CCACCACACTGACCCCTCT 60.843 63.158 0.00 0.00 0.00 3.69
187 188 1.674057 CACCACACTGACCCCTCTC 59.326 63.158 0.00 0.00 0.00 3.20
188 189 1.121407 CACCACACTGACCCCTCTCA 61.121 60.000 0.00 0.00 0.00 3.27
189 190 1.122019 ACCACACTGACCCCTCTCAC 61.122 60.000 0.00 0.00 0.00 3.51
190 191 1.674057 CACACTGACCCCTCTCACC 59.326 63.158 0.00 0.00 0.00 4.02
191 192 1.536662 ACACTGACCCCTCTCACCC 60.537 63.158 0.00 0.00 0.00 4.61
192 193 1.229336 CACTGACCCCTCTCACCCT 60.229 63.158 0.00 0.00 0.00 4.34
193 194 1.079438 ACTGACCCCTCTCACCCTC 59.921 63.158 0.00 0.00 0.00 4.30
194 195 2.037367 TGACCCCTCTCACCCTCG 59.963 66.667 0.00 0.00 0.00 4.63
195 196 2.359404 GACCCCTCTCACCCTCGA 59.641 66.667 0.00 0.00 0.00 4.04
196 197 2.037527 ACCCCTCTCACCCTCGAC 59.962 66.667 0.00 0.00 0.00 4.20
197 198 2.760385 CCCCTCTCACCCTCGACC 60.760 72.222 0.00 0.00 0.00 4.79
198 199 2.360980 CCCTCTCACCCTCGACCT 59.639 66.667 0.00 0.00 0.00 3.85
199 200 2.055042 CCCTCTCACCCTCGACCTG 61.055 68.421 0.00 0.00 0.00 4.00
200 201 2.055042 CCTCTCACCCTCGACCTGG 61.055 68.421 0.00 0.00 0.00 4.45
201 202 1.000771 CTCTCACCCTCGACCTGGA 60.001 63.158 0.00 0.00 0.00 3.86
202 203 1.000771 TCTCACCCTCGACCTGGAG 60.001 63.158 0.00 0.00 0.00 3.86
208 209 3.300013 CTCGACCTGGAGGAACCC 58.700 66.667 0.00 0.00 38.94 4.11
209 210 2.284405 TCGACCTGGAGGAACCCC 60.284 66.667 0.00 0.00 38.94 4.95
210 211 2.606519 CGACCTGGAGGAACCCCA 60.607 66.667 0.00 0.00 38.94 4.96
211 212 2.221299 CGACCTGGAGGAACCCCAA 61.221 63.158 0.00 0.00 34.14 4.12
212 213 1.379146 GACCTGGAGGAACCCCAAC 59.621 63.158 0.00 0.00 34.14 3.77
213 214 2.351276 CCTGGAGGAACCCCAACG 59.649 66.667 0.00 0.00 34.14 4.10
214 215 2.221299 CCTGGAGGAACCCCAACGA 61.221 63.158 0.00 0.00 34.14 3.85
215 216 1.003718 CTGGAGGAACCCCAACGAC 60.004 63.158 0.00 0.00 34.14 4.34
216 217 2.350134 GGAGGAACCCCAACGACC 59.650 66.667 0.00 0.00 33.88 4.79
217 218 2.350134 GAGGAACCCCAACGACCC 59.650 66.667 0.00 0.00 33.88 4.46
218 219 3.254617 AGGAACCCCAACGACCCC 61.255 66.667 0.00 0.00 33.88 4.95
219 220 4.355720 GGAACCCCAACGACCCCC 62.356 72.222 0.00 0.00 0.00 5.40
220 221 3.254617 GAACCCCAACGACCCCCT 61.255 66.667 0.00 0.00 0.00 4.79
221 222 3.254617 AACCCCAACGACCCCCTC 61.255 66.667 0.00 0.00 0.00 4.30
227 228 4.735599 AACGACCCCCTCCCCCTC 62.736 72.222 0.00 0.00 0.00 4.30
239 240 3.827898 CCCCTCGCTCACCGTCTC 61.828 72.222 0.00 0.00 38.35 3.36
240 241 3.827898 CCCTCGCTCACCGTCTCC 61.828 72.222 0.00 0.00 38.35 3.71
241 242 3.827898 CCTCGCTCACCGTCTCCC 61.828 72.222 0.00 0.00 38.35 4.30
242 243 3.062466 CTCGCTCACCGTCTCCCA 61.062 66.667 0.00 0.00 38.35 4.37
243 244 3.057547 CTCGCTCACCGTCTCCCAG 62.058 68.421 0.00 0.00 38.35 4.45
244 245 3.374402 CGCTCACCGTCTCCCAGT 61.374 66.667 0.00 0.00 0.00 4.00
245 246 2.932234 CGCTCACCGTCTCCCAGTT 61.932 63.158 0.00 0.00 0.00 3.16
246 247 1.592400 CGCTCACCGTCTCCCAGTTA 61.592 60.000 0.00 0.00 0.00 2.24
247 248 0.606604 GCTCACCGTCTCCCAGTTAA 59.393 55.000 0.00 0.00 0.00 2.01
248 249 1.404315 GCTCACCGTCTCCCAGTTAAG 60.404 57.143 0.00 0.00 0.00 1.85
249 250 1.893801 CTCACCGTCTCCCAGTTAAGT 59.106 52.381 0.00 0.00 0.00 2.24
250 251 2.299297 CTCACCGTCTCCCAGTTAAGTT 59.701 50.000 0.00 0.00 0.00 2.66
251 252 2.701951 TCACCGTCTCCCAGTTAAGTTT 59.298 45.455 0.00 0.00 0.00 2.66
252 253 3.064931 CACCGTCTCCCAGTTAAGTTTC 58.935 50.000 0.00 0.00 0.00 2.78
253 254 2.970640 ACCGTCTCCCAGTTAAGTTTCT 59.029 45.455 0.00 0.00 0.00 2.52
254 255 3.390311 ACCGTCTCCCAGTTAAGTTTCTT 59.610 43.478 0.00 0.00 0.00 2.52
255 256 3.995048 CCGTCTCCCAGTTAAGTTTCTTC 59.005 47.826 0.00 0.00 0.00 2.87
256 257 3.995048 CGTCTCCCAGTTAAGTTTCTTCC 59.005 47.826 0.00 0.00 0.00 3.46
257 258 4.262506 CGTCTCCCAGTTAAGTTTCTTCCT 60.263 45.833 0.00 0.00 0.00 3.36
258 259 5.239351 GTCTCCCAGTTAAGTTTCTTCCTC 58.761 45.833 0.00 0.00 0.00 3.71
259 260 4.905456 TCTCCCAGTTAAGTTTCTTCCTCA 59.095 41.667 0.00 0.00 0.00 3.86
260 261 4.969484 TCCCAGTTAAGTTTCTTCCTCAC 58.031 43.478 0.00 0.00 0.00 3.51
261 262 4.072839 CCCAGTTAAGTTTCTTCCTCACC 58.927 47.826 0.00 0.00 0.00 4.02
262 263 4.202472 CCCAGTTAAGTTTCTTCCTCACCT 60.202 45.833 0.00 0.00 0.00 4.00
263 264 4.998033 CCAGTTAAGTTTCTTCCTCACCTC 59.002 45.833 0.00 0.00 0.00 3.85
264 265 4.998033 CAGTTAAGTTTCTTCCTCACCTCC 59.002 45.833 0.00 0.00 0.00 4.30
265 266 4.658901 AGTTAAGTTTCTTCCTCACCTCCA 59.341 41.667 0.00 0.00 0.00 3.86
266 267 3.493767 AAGTTTCTTCCTCACCTCCAC 57.506 47.619 0.00 0.00 0.00 4.02
267 268 1.700186 AGTTTCTTCCTCACCTCCACC 59.300 52.381 0.00 0.00 0.00 4.61
268 269 0.685097 TTTCTTCCTCACCTCCACCG 59.315 55.000 0.00 0.00 0.00 4.94
269 270 1.827399 TTCTTCCTCACCTCCACCGC 61.827 60.000 0.00 0.00 0.00 5.68
270 271 3.316573 CTTCCTCACCTCCACCGCC 62.317 68.421 0.00 0.00 0.00 6.13
273 274 4.003788 CTCACCTCCACCGCCGTT 62.004 66.667 0.00 0.00 0.00 4.44
274 275 4.308458 TCACCTCCACCGCCGTTG 62.308 66.667 0.00 0.00 0.00 4.10
295 296 3.595819 GCCACTGCCTTGGTCATC 58.404 61.111 2.82 0.00 39.09 2.92
296 297 2.048603 GCCACTGCCTTGGTCATCC 61.049 63.158 2.82 0.00 39.09 3.51
297 298 1.379044 CCACTGCCTTGGTCATCCC 60.379 63.158 0.00 0.00 0.00 3.85
298 299 1.687612 CACTGCCTTGGTCATCCCT 59.312 57.895 0.00 0.00 0.00 4.20
299 300 0.393537 CACTGCCTTGGTCATCCCTC 60.394 60.000 0.00 0.00 0.00 4.30
300 301 0.548682 ACTGCCTTGGTCATCCCTCT 60.549 55.000 0.00 0.00 0.00 3.69
301 302 1.273838 ACTGCCTTGGTCATCCCTCTA 60.274 52.381 0.00 0.00 0.00 2.43
302 303 2.053244 CTGCCTTGGTCATCCCTCTAT 58.947 52.381 0.00 0.00 0.00 1.98
303 304 2.038295 CTGCCTTGGTCATCCCTCTATC 59.962 54.545 0.00 0.00 0.00 2.08
304 305 1.349357 GCCTTGGTCATCCCTCTATCC 59.651 57.143 0.00 0.00 0.00 2.59
305 306 1.981495 CCTTGGTCATCCCTCTATCCC 59.019 57.143 0.00 0.00 0.00 3.85
306 307 2.428484 CCTTGGTCATCCCTCTATCCCT 60.428 54.545 0.00 0.00 0.00 4.20
307 308 3.321950 CTTGGTCATCCCTCTATCCCTT 58.678 50.000 0.00 0.00 0.00 3.95
308 309 2.977808 TGGTCATCCCTCTATCCCTTC 58.022 52.381 0.00 0.00 0.00 3.46
309 310 2.261729 GGTCATCCCTCTATCCCTTCC 58.738 57.143 0.00 0.00 0.00 3.46
310 311 2.158081 GGTCATCCCTCTATCCCTTCCT 60.158 54.545 0.00 0.00 0.00 3.36
311 312 2.903135 GTCATCCCTCTATCCCTTCCTG 59.097 54.545 0.00 0.00 0.00 3.86
312 313 2.797765 TCATCCCTCTATCCCTTCCTGA 59.202 50.000 0.00 0.00 0.00 3.86
313 314 3.407540 TCATCCCTCTATCCCTTCCTGAT 59.592 47.826 0.00 0.00 0.00 2.90
314 315 3.551635 TCCCTCTATCCCTTCCTGATC 57.448 52.381 0.00 0.00 0.00 2.92
315 316 3.075181 TCCCTCTATCCCTTCCTGATCT 58.925 50.000 0.00 0.00 0.00 2.75
316 317 3.172339 CCCTCTATCCCTTCCTGATCTG 58.828 54.545 0.00 0.00 0.00 2.90
317 318 3.172339 CCTCTATCCCTTCCTGATCTGG 58.828 54.545 12.30 12.30 0.00 3.86
318 319 3.181413 CCTCTATCCCTTCCTGATCTGGA 60.181 52.174 16.80 16.80 0.00 3.86
319 320 4.512574 CCTCTATCCCTTCCTGATCTGGAT 60.513 50.000 20.77 9.17 39.16 3.41
320 321 4.423913 TCTATCCCTTCCTGATCTGGATG 58.576 47.826 20.77 20.99 36.52 3.51
321 322 2.875102 TCCCTTCCTGATCTGGATGA 57.125 50.000 26.63 18.40 35.83 2.92
322 323 3.135161 TCCCTTCCTGATCTGGATGAA 57.865 47.619 26.63 15.98 35.83 2.57
323 324 2.774234 TCCCTTCCTGATCTGGATGAAC 59.226 50.000 26.63 0.00 35.83 3.18
324 325 2.158696 CCCTTCCTGATCTGGATGAACC 60.159 54.545 26.63 0.00 35.83 3.62
325 326 2.158696 CCTTCCTGATCTGGATGAACCC 60.159 54.545 26.63 0.00 35.83 4.11
326 327 1.511613 TCCTGATCTGGATGAACCCC 58.488 55.000 16.80 0.00 38.00 4.95
327 328 0.107456 CCTGATCTGGATGAACCCCG 59.893 60.000 13.18 0.00 38.00 5.73
328 329 1.123077 CTGATCTGGATGAACCCCGA 58.877 55.000 0.00 0.00 38.00 5.14
329 330 0.830648 TGATCTGGATGAACCCCGAC 59.169 55.000 0.00 0.00 38.00 4.79
330 331 0.249489 GATCTGGATGAACCCCGACG 60.249 60.000 0.00 0.00 38.00 5.12
331 332 0.686441 ATCTGGATGAACCCCGACGA 60.686 55.000 0.00 0.00 38.00 4.20
332 333 1.153628 CTGGATGAACCCCGACGAC 60.154 63.158 0.00 0.00 38.00 4.34
333 334 2.186125 GGATGAACCCCGACGACC 59.814 66.667 0.00 0.00 0.00 4.79
334 335 2.186125 GATGAACCCCGACGACCC 59.814 66.667 0.00 0.00 0.00 4.46
335 336 3.381333 GATGAACCCCGACGACCCC 62.381 68.421 0.00 0.00 0.00 4.95
371 372 5.443230 CCCCCTAAGTTTCTTCTTCATCT 57.557 43.478 0.00 0.00 0.00 2.90
372 373 5.432645 CCCCCTAAGTTTCTTCTTCATCTC 58.567 45.833 0.00 0.00 0.00 2.75
373 374 5.432645 CCCCTAAGTTTCTTCTTCATCTCC 58.567 45.833 0.00 0.00 0.00 3.71
374 375 5.045578 CCCCTAAGTTTCTTCTTCATCTCCA 60.046 44.000 0.00 0.00 0.00 3.86
375 376 6.353429 CCCCTAAGTTTCTTCTTCATCTCCAT 60.353 42.308 0.00 0.00 0.00 3.41
376 377 6.765512 CCCTAAGTTTCTTCTTCATCTCCATC 59.234 42.308 0.00 0.00 0.00 3.51
377 378 6.765512 CCTAAGTTTCTTCTTCATCTCCATCC 59.234 42.308 0.00 0.00 0.00 3.51
378 379 4.764172 AGTTTCTTCTTCATCTCCATCCG 58.236 43.478 0.00 0.00 0.00 4.18
379 380 3.827008 TTCTTCTTCATCTCCATCCGG 57.173 47.619 0.00 0.00 0.00 5.14
380 381 2.042464 TCTTCTTCATCTCCATCCGGG 58.958 52.381 0.00 0.00 38.37 5.73
381 382 2.042464 CTTCTTCATCTCCATCCGGGA 58.958 52.381 0.00 0.00 45.89 5.14
382 383 1.414158 TCTTCATCTCCATCCGGGAC 58.586 55.000 0.00 0.00 42.15 4.46
383 384 1.123077 CTTCATCTCCATCCGGGACA 58.877 55.000 0.00 0.00 42.15 4.02
384 385 0.830648 TTCATCTCCATCCGGGACAC 59.169 55.000 0.00 0.00 42.15 3.67
385 386 1.068083 CATCTCCATCCGGGACACG 59.932 63.158 0.00 0.00 42.15 4.49
416 417 4.887987 GCTCTCATCGCTGCCGCT 62.888 66.667 0.00 0.00 0.00 5.52
417 418 2.657944 CTCTCATCGCTGCCGCTC 60.658 66.667 0.00 0.00 0.00 5.03
418 419 4.212913 TCTCATCGCTGCCGCTCC 62.213 66.667 0.00 0.00 0.00 4.70
419 420 4.218578 CTCATCGCTGCCGCTCCT 62.219 66.667 0.00 0.00 0.00 3.69
420 421 4.212913 TCATCGCTGCCGCTCCTC 62.213 66.667 0.00 0.00 0.00 3.71
429 430 4.899239 CCGCTCCTCGTGCCATCC 62.899 72.222 0.00 0.00 36.19 3.51
430 431 4.899239 CGCTCCTCGTGCCATCCC 62.899 72.222 0.00 0.00 0.00 3.85
431 432 4.554036 GCTCCTCGTGCCATCCCC 62.554 72.222 0.00 0.00 0.00 4.81
432 433 3.083349 CTCCTCGTGCCATCCCCA 61.083 66.667 0.00 0.00 0.00 4.96
433 434 3.391665 CTCCTCGTGCCATCCCCAC 62.392 68.421 0.00 0.00 0.00 4.61
434 435 4.489771 CCTCGTGCCATCCCCACC 62.490 72.222 0.00 0.00 0.00 4.61
435 436 3.402681 CTCGTGCCATCCCCACCT 61.403 66.667 0.00 0.00 0.00 4.00
436 437 2.933287 TCGTGCCATCCCCACCTT 60.933 61.111 0.00 0.00 0.00 3.50
437 438 2.438434 CGTGCCATCCCCACCTTC 60.438 66.667 0.00 0.00 0.00 3.46
438 439 2.438434 GTGCCATCCCCACCTTCG 60.438 66.667 0.00 0.00 0.00 3.79
439 440 3.727258 TGCCATCCCCACCTTCGG 61.727 66.667 0.00 0.00 0.00 4.30
441 442 4.856801 CCATCCCCACCTTCGGCG 62.857 72.222 0.00 0.00 0.00 6.46
442 443 4.096003 CATCCCCACCTTCGGCGT 62.096 66.667 6.85 0.00 0.00 5.68
443 444 3.782443 ATCCCCACCTTCGGCGTC 61.782 66.667 6.85 0.00 0.00 5.19
446 447 4.760047 CCCACCTTCGGCGTCCTG 62.760 72.222 6.85 0.00 0.00 3.86
466 467 4.678509 TGCATAACAGAAATCAACCGAC 57.321 40.909 0.00 0.00 0.00 4.79
467 468 3.124466 TGCATAACAGAAATCAACCGACG 59.876 43.478 0.00 0.00 0.00 5.12
468 469 3.124636 GCATAACAGAAATCAACCGACGT 59.875 43.478 0.00 0.00 0.00 4.34
469 470 4.637968 CATAACAGAAATCAACCGACGTG 58.362 43.478 0.00 0.00 0.00 4.49
470 471 2.519377 ACAGAAATCAACCGACGTGA 57.481 45.000 0.00 0.00 0.00 4.35
471 472 2.404215 ACAGAAATCAACCGACGTGAG 58.596 47.619 0.00 0.00 0.00 3.51
472 473 1.726791 CAGAAATCAACCGACGTGAGG 59.273 52.381 0.00 0.00 0.00 3.86
473 474 1.616865 AGAAATCAACCGACGTGAGGA 59.383 47.619 13.03 0.00 0.00 3.71
474 475 2.036733 AGAAATCAACCGACGTGAGGAA 59.963 45.455 13.03 0.00 0.00 3.36
475 476 2.536761 AATCAACCGACGTGAGGAAA 57.463 45.000 13.03 0.00 0.00 3.13
476 477 2.536761 ATCAACCGACGTGAGGAAAA 57.463 45.000 13.03 0.00 0.00 2.29
477 478 2.312722 TCAACCGACGTGAGGAAAAA 57.687 45.000 13.03 0.00 0.00 1.94
505 506 3.057526 AGGCACCTAAGATTTCGCAAAAC 60.058 43.478 0.00 0.00 0.00 2.43
523 524 6.184706 GCAAAACCGAAATAATTTATGCAGC 58.815 36.000 0.00 0.00 0.00 5.25
544 547 6.745907 GCAGCGATACGTACATAGATAAATCA 59.254 38.462 0.00 0.00 0.00 2.57
545 548 7.272731 GCAGCGATACGTACATAGATAAATCAA 59.727 37.037 0.00 0.00 0.00 2.57
598 601 0.178992 TGCAAGAAAGTCCACCTGGG 60.179 55.000 0.00 0.00 35.41 4.45
885 895 2.028420 TGCATAGCTCACATCACCAC 57.972 50.000 0.00 0.00 0.00 4.16
949 966 3.703921 AGACACCTTCTCCTTCTAGGTC 58.296 50.000 0.00 0.00 40.24 3.85
1245 1265 2.035237 GCCGGATCGTCAACCCCATA 62.035 60.000 5.05 0.00 0.00 2.74
1449 1469 3.726517 CACAAGGTCGCCAAGCCG 61.727 66.667 0.00 0.00 0.00 5.52
1530 1550 1.069596 CAACAACAAGCCCAAGCCC 59.930 57.895 0.00 0.00 41.25 5.19
1531 1551 1.382420 AACAACAAGCCCAAGCCCA 60.382 52.632 0.00 0.00 41.25 5.36
1532 1552 0.980231 AACAACAAGCCCAAGCCCAA 60.980 50.000 0.00 0.00 41.25 4.12
1533 1553 1.368579 CAACAAGCCCAAGCCCAAG 59.631 57.895 0.00 0.00 41.25 3.61
1534 1554 2.510551 AACAAGCCCAAGCCCAAGC 61.511 57.895 0.00 0.00 41.25 4.01
1535 1555 3.698820 CAAGCCCAAGCCCAAGCC 61.699 66.667 0.00 0.00 41.25 4.35
1546 1566 4.399395 CCAAGCCGCAGCCTCAGA 62.399 66.667 0.00 0.00 41.25 3.27
1613 1633 4.593864 GATGGAGGAGGGCGCGTC 62.594 72.222 8.43 4.38 0.00 5.19
1814 1834 1.406180 GGAGGAGGACGAAGAACTAGC 59.594 57.143 0.00 0.00 0.00 3.42
1824 1844 0.528470 AAGAACTAGCGCTCGAGCTT 59.472 50.000 32.88 23.10 46.80 3.74
1850 1870 3.701604 GATTCGCTCCCGTCGCAGT 62.702 63.158 0.00 0.00 35.54 4.40
1946 1982 7.538303 AAAAGCACATTTACCTTGTGAAAAG 57.462 32.000 7.93 0.00 45.83 2.27
1947 1983 6.463995 AAGCACATTTACCTTGTGAAAAGA 57.536 33.333 7.93 0.00 45.83 2.52
1951 1987 8.806146 AGCACATTTACCTTGTGAAAAGAATAT 58.194 29.630 7.93 0.00 45.83 1.28
2103 3745 5.679734 ATGTGTTTTGCTGTCTGTTCTAG 57.320 39.130 0.00 0.00 0.00 2.43
2122 3765 0.240945 GGGTGCATTTTGTCAGTCCG 59.759 55.000 0.00 0.00 0.00 4.79
2179 3823 0.741221 GGTTCTACGGCTTCCTGCAG 60.741 60.000 6.78 6.78 45.15 4.41
2270 3916 5.920840 CGGATGCTAAAAATGATCGTCTCTA 59.079 40.000 0.00 0.00 0.00 2.43
2304 3952 7.668469 ACTCCCTCCGTTTCTAAATACATTTTT 59.332 33.333 0.00 0.00 0.00 1.94
2429 4077 6.543831 AGAGTGTAGATTCACTTGTTTTGCTT 59.456 34.615 0.98 0.00 46.81 3.91
2430 4078 6.729187 AGTGTAGATTCACTTGTTTTGCTTC 58.271 36.000 0.00 0.00 44.92 3.86
2431 4079 5.621228 GTGTAGATTCACTTGTTTTGCTTCG 59.379 40.000 0.00 0.00 35.68 3.79
2436 4084 5.493133 TTCACTTGTTTTGCTTCGTATGT 57.507 34.783 0.00 0.00 0.00 2.29
2438 4086 6.223138 TCACTTGTTTTGCTTCGTATGTAG 57.777 37.500 0.00 0.00 0.00 2.74
2458 4157 2.549754 AGATACAATGCTACAATGGCGC 59.450 45.455 0.00 0.00 0.00 6.53
2463 4162 3.518068 GCTACAATGGCGCCCCAC 61.518 66.667 26.77 2.11 45.77 4.61
2464 4163 2.045438 CTACAATGGCGCCCCACA 60.045 61.111 26.77 4.98 45.77 4.17
2482 4181 3.128242 CCACACATCTTGAAGAAGGATGC 59.872 47.826 0.00 0.00 0.00 3.91
2510 4209 8.752005 TCGGAAGAATTGGATTTTCTGATTAT 57.248 30.769 0.00 0.00 37.03 1.28
2587 4286 2.732366 CGACAAGTATCTCCGGATGTG 58.268 52.381 10.74 0.00 33.71 3.21
2594 4293 3.890147 AGTATCTCCGGATGTGTACCTTC 59.110 47.826 3.57 0.00 33.71 3.46
2601 4300 2.159296 CGGATGTGTACCTTCGATGTCA 60.159 50.000 0.00 0.00 0.00 3.58
2617 4316 0.319040 GTCAGAGAGCACGTGCAGAA 60.319 55.000 39.21 17.15 45.16 3.02
2626 4325 2.162208 AGCACGTGCAGAAATGTTATGG 59.838 45.455 39.21 0.00 45.16 2.74
2644 4343 8.058667 TGTTATGGTCAGATTTTCTACTACGA 57.941 34.615 0.00 0.00 0.00 3.43
2739 4441 0.038310 AAGCAAGAGGGTGGCCTTAC 59.962 55.000 3.32 0.00 0.00 2.34
2760 4462 3.055530 ACTTGCTCGGATCTCTTGATTGT 60.056 43.478 0.00 0.00 32.19 2.71
2766 4468 4.625028 TCGGATCTCTTGATTGTATGCAG 58.375 43.478 0.00 0.00 32.19 4.41
2783 4485 3.668447 TGCAGTGGAGATGAAAGAACTC 58.332 45.455 0.00 0.00 0.00 3.01
2803 4505 1.075536 CCCCAAAAGCTCTACAAGGGT 59.924 52.381 0.00 0.00 32.90 4.34
2818 4520 4.247814 ACAAGGGTAATATCAGGGCCATA 58.752 43.478 6.18 0.00 0.00 2.74
2834 4536 4.159506 GGGCCATATTAAGAAGCACAACAA 59.840 41.667 4.39 0.00 0.00 2.83
2907 4612 2.040145 TGACATGCCTGGATCTCACAAA 59.960 45.455 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.698040 AGTGATGATCCATTTTGAGCCAC 59.302 43.478 0.00 0.00 0.00 5.01
1 2 3.972133 AGTGATGATCCATTTTGAGCCA 58.028 40.909 0.00 0.00 0.00 4.75
2 3 6.263842 TGAATAGTGATGATCCATTTTGAGCC 59.736 38.462 0.00 0.00 0.00 4.70
3 4 7.268199 TGAATAGTGATGATCCATTTTGAGC 57.732 36.000 0.00 0.00 0.00 4.26
4 5 9.286170 AGATGAATAGTGATGATCCATTTTGAG 57.714 33.333 0.00 0.00 0.00 3.02
5 6 9.636789 AAGATGAATAGTGATGATCCATTTTGA 57.363 29.630 0.00 0.00 0.00 2.69
14 15 9.566432 GGGAAGTTAAAGATGAATAGTGATGAT 57.434 33.333 0.00 0.00 0.00 2.45
15 16 8.772250 AGGGAAGTTAAAGATGAATAGTGATGA 58.228 33.333 0.00 0.00 0.00 2.92
16 17 8.970859 AGGGAAGTTAAAGATGAATAGTGATG 57.029 34.615 0.00 0.00 0.00 3.07
24 25 9.273137 AGAAGAGATAGGGAAGTTAAAGATGAA 57.727 33.333 0.00 0.00 0.00 2.57
25 26 8.846423 AGAAGAGATAGGGAAGTTAAAGATGA 57.154 34.615 0.00 0.00 0.00 2.92
26 27 9.541143 GAAGAAGAGATAGGGAAGTTAAAGATG 57.459 37.037 0.00 0.00 0.00 2.90
27 28 8.710239 GGAAGAAGAGATAGGGAAGTTAAAGAT 58.290 37.037 0.00 0.00 0.00 2.40
28 29 7.901861 AGGAAGAAGAGATAGGGAAGTTAAAGA 59.098 37.037 0.00 0.00 0.00 2.52
29 30 8.084985 AGGAAGAAGAGATAGGGAAGTTAAAG 57.915 38.462 0.00 0.00 0.00 1.85
30 31 7.678598 TGAGGAAGAAGAGATAGGGAAGTTAAA 59.321 37.037 0.00 0.00 0.00 1.52
31 32 7.189794 TGAGGAAGAAGAGATAGGGAAGTTAA 58.810 38.462 0.00 0.00 0.00 2.01
32 33 6.742756 TGAGGAAGAAGAGATAGGGAAGTTA 58.257 40.000 0.00 0.00 0.00 2.24
33 34 5.594777 TGAGGAAGAAGAGATAGGGAAGTT 58.405 41.667 0.00 0.00 0.00 2.66
34 35 5.213868 TGAGGAAGAAGAGATAGGGAAGT 57.786 43.478 0.00 0.00 0.00 3.01
35 36 5.602145 ACATGAGGAAGAAGAGATAGGGAAG 59.398 44.000 0.00 0.00 0.00 3.46
36 37 5.533112 ACATGAGGAAGAAGAGATAGGGAA 58.467 41.667 0.00 0.00 0.00 3.97
37 38 5.149584 ACATGAGGAAGAAGAGATAGGGA 57.850 43.478 0.00 0.00 0.00 4.20
38 39 5.835819 TGTACATGAGGAAGAAGAGATAGGG 59.164 44.000 0.00 0.00 0.00 3.53
39 40 6.968263 TGTACATGAGGAAGAAGAGATAGG 57.032 41.667 0.00 0.00 0.00 2.57
40 41 8.006298 AGTTGTACATGAGGAAGAAGAGATAG 57.994 38.462 0.00 0.00 0.00 2.08
41 42 7.836685 AGAGTTGTACATGAGGAAGAAGAGATA 59.163 37.037 0.00 0.00 0.00 1.98
42 43 6.667414 AGAGTTGTACATGAGGAAGAAGAGAT 59.333 38.462 0.00 0.00 0.00 2.75
43 44 6.013379 AGAGTTGTACATGAGGAAGAAGAGA 58.987 40.000 0.00 0.00 0.00 3.10
44 45 6.279513 AGAGTTGTACATGAGGAAGAAGAG 57.720 41.667 0.00 0.00 0.00 2.85
45 46 6.127591 GCTAGAGTTGTACATGAGGAAGAAGA 60.128 42.308 0.00 0.00 0.00 2.87
46 47 6.039616 GCTAGAGTTGTACATGAGGAAGAAG 58.960 44.000 0.00 0.00 0.00 2.85
47 48 5.717178 AGCTAGAGTTGTACATGAGGAAGAA 59.283 40.000 0.00 0.00 0.00 2.52
48 49 5.265191 AGCTAGAGTTGTACATGAGGAAGA 58.735 41.667 0.00 0.00 0.00 2.87
49 50 5.590530 AGCTAGAGTTGTACATGAGGAAG 57.409 43.478 0.00 0.00 0.00 3.46
50 51 5.067936 GCTAGCTAGAGTTGTACATGAGGAA 59.932 44.000 25.15 0.00 0.00 3.36
51 52 4.580995 GCTAGCTAGAGTTGTACATGAGGA 59.419 45.833 25.15 0.00 0.00 3.71
52 53 4.261825 GGCTAGCTAGAGTTGTACATGAGG 60.262 50.000 25.15 0.00 0.00 3.86
53 54 4.555708 CGGCTAGCTAGAGTTGTACATGAG 60.556 50.000 25.15 0.00 0.00 2.90
54 55 3.315470 CGGCTAGCTAGAGTTGTACATGA 59.685 47.826 25.15 0.00 0.00 3.07
55 56 3.633235 CGGCTAGCTAGAGTTGTACATG 58.367 50.000 25.15 0.00 0.00 3.21
56 57 2.034812 GCGGCTAGCTAGAGTTGTACAT 59.965 50.000 25.15 0.00 44.04 2.29
57 58 1.404391 GCGGCTAGCTAGAGTTGTACA 59.596 52.381 25.15 0.00 44.04 2.90
58 59 2.122563 GCGGCTAGCTAGAGTTGTAC 57.877 55.000 25.15 4.36 44.04 2.90
70 71 2.203209 GATGGTTGGGGCGGCTAG 60.203 66.667 9.56 0.00 0.00 3.42
71 72 4.169696 CGATGGTTGGGGCGGCTA 62.170 66.667 9.56 0.00 0.00 3.93
77 78 4.506255 GGAGGCCGATGGTTGGGG 62.506 72.222 0.00 0.00 0.00 4.96
78 79 3.727258 TGGAGGCCGATGGTTGGG 61.727 66.667 0.00 0.00 0.00 4.12
79 80 2.438434 GTGGAGGCCGATGGTTGG 60.438 66.667 0.00 0.00 0.00 3.77
80 81 2.438434 GGTGGAGGCCGATGGTTG 60.438 66.667 0.00 0.00 0.00 3.77
81 82 2.308722 ATGGTGGAGGCCGATGGTT 61.309 57.895 0.00 0.00 0.00 3.67
82 83 2.692368 ATGGTGGAGGCCGATGGT 60.692 61.111 0.00 0.00 0.00 3.55
83 84 2.203252 CATGGTGGAGGCCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
84 85 2.903855 GCATGGTGGAGGCCGATG 60.904 66.667 0.00 0.00 0.00 3.84
85 86 4.552365 CGCATGGTGGAGGCCGAT 62.552 66.667 0.00 0.00 0.00 4.18
87 88 4.155733 TACGCATGGTGGAGGCCG 62.156 66.667 0.00 0.00 0.00 6.13
88 89 2.203070 CTACGCATGGTGGAGGCC 60.203 66.667 0.00 0.00 0.00 5.19
89 90 1.521681 GTCTACGCATGGTGGAGGC 60.522 63.158 0.00 0.00 36.75 4.70
90 91 1.226974 CGTCTACGCATGGTGGAGG 60.227 63.158 0.00 0.77 36.75 4.30
91 92 0.525668 GTCGTCTACGCATGGTGGAG 60.526 60.000 0.00 0.00 36.75 3.86
92 93 1.509463 GTCGTCTACGCATGGTGGA 59.491 57.895 0.00 0.00 39.60 4.02
93 94 1.872234 CGTCGTCTACGCATGGTGG 60.872 63.158 0.00 0.00 46.10 4.61
94 95 3.675485 CGTCGTCTACGCATGGTG 58.325 61.111 0.00 0.00 46.10 4.17
102 103 1.082235 GATAGCGCCCGTCGTCTAC 60.082 63.158 2.29 0.00 41.07 2.59
103 104 1.524393 TGATAGCGCCCGTCGTCTA 60.524 57.895 2.29 0.00 41.07 2.59
104 105 2.827190 TGATAGCGCCCGTCGTCT 60.827 61.111 2.29 0.00 41.07 4.18
105 106 2.654404 GTGATAGCGCCCGTCGTC 60.654 66.667 2.29 0.00 41.07 4.20
106 107 4.547905 CGTGATAGCGCCCGTCGT 62.548 66.667 2.29 0.00 41.07 4.34
107 108 4.547905 ACGTGATAGCGCCCGTCG 62.548 66.667 2.29 5.89 42.12 5.12
108 109 2.954868 CACGTGATAGCGCCCGTC 60.955 66.667 10.90 0.00 34.88 4.79
123 124 2.050985 GCAGTTGTGAAGCGGCAC 60.051 61.111 1.45 5.21 39.22 5.01
128 129 2.558313 GAGGCGCAGTTGTGAAGC 59.442 61.111 10.83 0.00 0.00 3.86
129 130 2.328099 GGGAGGCGCAGTTGTGAAG 61.328 63.158 10.83 0.00 0.00 3.02
130 131 2.281484 GGGAGGCGCAGTTGTGAA 60.281 61.111 10.83 0.00 0.00 3.18
131 132 4.329545 GGGGAGGCGCAGTTGTGA 62.330 66.667 10.83 0.00 0.00 3.58
147 148 2.718747 TAACAACGGCGTGTGAGGGG 62.719 60.000 15.70 0.00 0.00 4.79
148 149 1.289109 CTAACAACGGCGTGTGAGGG 61.289 60.000 15.70 1.75 0.00 4.30
149 150 1.897398 GCTAACAACGGCGTGTGAGG 61.897 60.000 15.70 5.73 31.35 3.86
150 151 1.491563 GCTAACAACGGCGTGTGAG 59.508 57.895 15.70 16.82 33.58 3.51
151 152 1.957186 GGCTAACAACGGCGTGTGA 60.957 57.895 15.70 6.40 0.00 3.58
152 153 2.248135 TGGCTAACAACGGCGTGTG 61.248 57.895 15.70 16.36 0.00 3.82
153 154 2.109387 TGGCTAACAACGGCGTGT 59.891 55.556 15.70 11.48 0.00 4.49
154 155 2.554272 GTGGCTAACAACGGCGTG 59.446 61.111 15.70 10.75 0.00 5.34
155 156 2.667199 GGTGGCTAACAACGGCGT 60.667 61.111 6.77 6.77 0.00 5.68
156 157 2.666862 TGGTGGCTAACAACGGCG 60.667 61.111 4.80 4.80 40.67 6.46
157 158 1.894756 TGTGGTGGCTAACAACGGC 60.895 57.895 0.00 0.00 40.67 5.68
158 159 0.534203 AGTGTGGTGGCTAACAACGG 60.534 55.000 0.00 0.00 40.67 4.44
159 160 0.586319 CAGTGTGGTGGCTAACAACG 59.414 55.000 0.00 0.00 40.67 4.10
160 161 1.602377 GTCAGTGTGGTGGCTAACAAC 59.398 52.381 0.00 0.00 37.28 3.32
161 162 1.476110 GGTCAGTGTGGTGGCTAACAA 60.476 52.381 0.00 0.00 0.00 2.83
162 163 0.107831 GGTCAGTGTGGTGGCTAACA 59.892 55.000 0.00 0.00 0.00 2.41
163 164 0.605589 GGGTCAGTGTGGTGGCTAAC 60.606 60.000 0.00 0.00 0.00 2.34
164 165 1.758592 GGGTCAGTGTGGTGGCTAA 59.241 57.895 0.00 0.00 0.00 3.09
165 166 2.221299 GGGGTCAGTGTGGTGGCTA 61.221 63.158 0.00 0.00 0.00 3.93
166 167 3.570212 GGGGTCAGTGTGGTGGCT 61.570 66.667 0.00 0.00 0.00 4.75
167 168 3.553095 GAGGGGTCAGTGTGGTGGC 62.553 68.421 0.00 0.00 0.00 5.01
168 169 1.831652 GAGAGGGGTCAGTGTGGTGG 61.832 65.000 0.00 0.00 0.00 4.61
169 170 1.121407 TGAGAGGGGTCAGTGTGGTG 61.121 60.000 0.00 0.00 0.00 4.17
170 171 1.122019 GTGAGAGGGGTCAGTGTGGT 61.122 60.000 0.00 0.00 0.00 4.16
171 172 1.674057 GTGAGAGGGGTCAGTGTGG 59.326 63.158 0.00 0.00 0.00 4.17
172 173 1.674057 GGTGAGAGGGGTCAGTGTG 59.326 63.158 0.00 0.00 0.00 3.82
173 174 1.536662 GGGTGAGAGGGGTCAGTGT 60.537 63.158 0.00 0.00 0.00 3.55
174 175 1.229336 AGGGTGAGAGGGGTCAGTG 60.229 63.158 0.00 0.00 0.00 3.66
175 176 1.079438 GAGGGTGAGAGGGGTCAGT 59.921 63.158 0.00 0.00 0.00 3.41
176 177 2.055042 CGAGGGTGAGAGGGGTCAG 61.055 68.421 0.00 0.00 0.00 3.51
177 178 2.037367 CGAGGGTGAGAGGGGTCA 59.963 66.667 0.00 0.00 0.00 4.02
178 179 2.053277 GTCGAGGGTGAGAGGGGTC 61.053 68.421 0.00 0.00 0.00 4.46
179 180 2.037527 GTCGAGGGTGAGAGGGGT 59.962 66.667 0.00 0.00 0.00 4.95
180 181 2.760385 GGTCGAGGGTGAGAGGGG 60.760 72.222 0.00 0.00 0.00 4.79
181 182 2.055042 CAGGTCGAGGGTGAGAGGG 61.055 68.421 0.00 0.00 0.00 4.30
182 183 2.055042 CCAGGTCGAGGGTGAGAGG 61.055 68.421 0.00 0.00 0.00 3.69
183 184 1.000771 TCCAGGTCGAGGGTGAGAG 60.001 63.158 0.00 0.00 0.00 3.20
184 185 1.000771 CTCCAGGTCGAGGGTGAGA 60.001 63.158 0.00 0.00 0.00 3.27
185 186 2.055042 CCTCCAGGTCGAGGGTGAG 61.055 68.421 0.00 0.00 45.03 3.51
186 187 2.037367 CCTCCAGGTCGAGGGTGA 59.963 66.667 0.00 0.00 45.03 4.02
191 192 2.359967 GGGGTTCCTCCAGGTCGAG 61.360 68.421 0.00 0.00 38.11 4.04
192 193 2.284405 GGGGTTCCTCCAGGTCGA 60.284 66.667 0.00 0.00 38.11 4.20
193 194 2.221299 TTGGGGTTCCTCCAGGTCG 61.221 63.158 0.00 0.00 38.11 4.79
194 195 1.379146 GTTGGGGTTCCTCCAGGTC 59.621 63.158 0.00 0.00 38.11 3.85
195 196 2.526046 CGTTGGGGTTCCTCCAGGT 61.526 63.158 0.00 0.00 38.11 4.00
196 197 2.221299 TCGTTGGGGTTCCTCCAGG 61.221 63.158 0.00 0.00 38.11 4.45
197 198 1.003718 GTCGTTGGGGTTCCTCCAG 60.004 63.158 0.00 0.00 38.11 3.86
198 199 2.522367 GGTCGTTGGGGTTCCTCCA 61.522 63.158 0.00 0.00 38.11 3.86
199 200 2.350134 GGTCGTTGGGGTTCCTCC 59.650 66.667 0.00 0.00 0.00 4.30
200 201 2.350134 GGGTCGTTGGGGTTCCTC 59.650 66.667 0.00 0.00 0.00 3.71
201 202 3.254617 GGGGTCGTTGGGGTTCCT 61.255 66.667 0.00 0.00 0.00 3.36
202 203 4.355720 GGGGGTCGTTGGGGTTCC 62.356 72.222 0.00 0.00 0.00 3.62
203 204 3.254617 AGGGGGTCGTTGGGGTTC 61.255 66.667 0.00 0.00 0.00 3.62
204 205 3.254617 GAGGGGGTCGTTGGGGTT 61.255 66.667 0.00 0.00 0.00 4.11
210 211 4.735599 GAGGGGGAGGGGGTCGTT 62.736 72.222 0.00 0.00 0.00 3.85
222 223 3.827898 GAGACGGTGAGCGAGGGG 61.828 72.222 12.27 0.00 0.00 4.79
223 224 3.827898 GGAGACGGTGAGCGAGGG 61.828 72.222 12.27 0.00 0.00 4.30
224 225 3.827898 GGGAGACGGTGAGCGAGG 61.828 72.222 12.27 0.00 0.00 4.63
225 226 3.057547 CTGGGAGACGGTGAGCGAG 62.058 68.421 12.27 0.00 0.00 5.03
226 227 3.062466 CTGGGAGACGGTGAGCGA 61.062 66.667 12.27 0.00 0.00 4.93
227 228 1.592400 TAACTGGGAGACGGTGAGCG 61.592 60.000 1.13 1.13 39.10 5.03
228 229 0.606604 TTAACTGGGAGACGGTGAGC 59.393 55.000 0.00 0.00 39.10 4.26
229 230 1.893801 ACTTAACTGGGAGACGGTGAG 59.106 52.381 0.00 0.00 39.10 3.51
230 231 2.005370 ACTTAACTGGGAGACGGTGA 57.995 50.000 0.00 0.00 39.10 4.02
231 232 2.833631 AACTTAACTGGGAGACGGTG 57.166 50.000 0.00 0.00 39.10 4.94
232 233 2.970640 AGAAACTTAACTGGGAGACGGT 59.029 45.455 0.00 0.00 41.57 4.83
233 234 3.679824 AGAAACTTAACTGGGAGACGG 57.320 47.619 0.00 0.00 0.00 4.79
234 235 3.995048 GGAAGAAACTTAACTGGGAGACG 59.005 47.826 0.00 0.00 0.00 4.18
235 236 5.221661 TGAGGAAGAAACTTAACTGGGAGAC 60.222 44.000 0.00 0.00 0.00 3.36
236 237 4.905456 TGAGGAAGAAACTTAACTGGGAGA 59.095 41.667 0.00 0.00 0.00 3.71
237 238 4.998033 GTGAGGAAGAAACTTAACTGGGAG 59.002 45.833 0.00 0.00 0.00 4.30
238 239 4.202430 GGTGAGGAAGAAACTTAACTGGGA 60.202 45.833 0.00 0.00 0.00 4.37
239 240 4.072839 GGTGAGGAAGAAACTTAACTGGG 58.927 47.826 0.00 0.00 0.00 4.45
240 241 4.974399 AGGTGAGGAAGAAACTTAACTGG 58.026 43.478 0.00 0.00 0.00 4.00
241 242 4.998033 GGAGGTGAGGAAGAAACTTAACTG 59.002 45.833 0.00 0.00 0.00 3.16
242 243 4.658901 TGGAGGTGAGGAAGAAACTTAACT 59.341 41.667 0.00 0.00 0.00 2.24
243 244 4.755629 GTGGAGGTGAGGAAGAAACTTAAC 59.244 45.833 0.00 0.00 0.00 2.01
244 245 4.202430 GGTGGAGGTGAGGAAGAAACTTAA 60.202 45.833 0.00 0.00 0.00 1.85
245 246 3.326880 GGTGGAGGTGAGGAAGAAACTTA 59.673 47.826 0.00 0.00 0.00 2.24
246 247 2.106684 GGTGGAGGTGAGGAAGAAACTT 59.893 50.000 0.00 0.00 0.00 2.66
247 248 1.700186 GGTGGAGGTGAGGAAGAAACT 59.300 52.381 0.00 0.00 0.00 2.66
248 249 1.608283 CGGTGGAGGTGAGGAAGAAAC 60.608 57.143 0.00 0.00 0.00 2.78
249 250 0.685097 CGGTGGAGGTGAGGAAGAAA 59.315 55.000 0.00 0.00 0.00 2.52
250 251 1.827399 GCGGTGGAGGTGAGGAAGAA 61.827 60.000 0.00 0.00 0.00 2.52
251 252 2.283529 GCGGTGGAGGTGAGGAAGA 61.284 63.158 0.00 0.00 0.00 2.87
252 253 2.266055 GCGGTGGAGGTGAGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
253 254 3.319198 GGCGGTGGAGGTGAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
256 257 4.003788 AACGGCGGTGGAGGTGAG 62.004 66.667 13.24 0.00 0.00 3.51
257 258 4.308458 CAACGGCGGTGGAGGTGA 62.308 66.667 19.01 0.00 0.00 4.02
278 279 2.048603 GGATGACCAAGGCAGTGGC 61.049 63.158 9.02 9.02 43.00 5.01
279 280 1.379044 GGGATGACCAAGGCAGTGG 60.379 63.158 5.74 5.74 44.92 4.00
280 281 0.393537 GAGGGATGACCAAGGCAGTG 60.394 60.000 0.00 0.00 43.89 3.66
281 282 0.548682 AGAGGGATGACCAAGGCAGT 60.549 55.000 0.00 0.00 43.89 4.40
282 283 1.500474 TAGAGGGATGACCAAGGCAG 58.500 55.000 0.00 0.00 43.89 4.85
283 284 2.050144 GATAGAGGGATGACCAAGGCA 58.950 52.381 0.00 0.00 43.89 4.75
284 285 1.349357 GGATAGAGGGATGACCAAGGC 59.651 57.143 0.00 0.00 43.89 4.35
285 286 1.981495 GGGATAGAGGGATGACCAAGG 59.019 57.143 0.00 0.00 43.89 3.61
286 287 2.983296 AGGGATAGAGGGATGACCAAG 58.017 52.381 0.00 0.00 43.89 3.61
287 288 3.318313 GAAGGGATAGAGGGATGACCAA 58.682 50.000 0.00 0.00 43.89 3.67
288 289 2.427889 GGAAGGGATAGAGGGATGACCA 60.428 54.545 0.00 0.00 43.89 4.02
289 290 2.158081 AGGAAGGGATAGAGGGATGACC 60.158 54.545 0.00 0.00 40.67 4.02
290 291 2.903135 CAGGAAGGGATAGAGGGATGAC 59.097 54.545 0.00 0.00 0.00 3.06
291 292 2.797765 TCAGGAAGGGATAGAGGGATGA 59.202 50.000 0.00 0.00 0.00 2.92
292 293 3.266477 TCAGGAAGGGATAGAGGGATG 57.734 52.381 0.00 0.00 0.00 3.51
293 294 3.672139 AGATCAGGAAGGGATAGAGGGAT 59.328 47.826 0.00 0.00 0.00 3.85
294 295 3.075181 AGATCAGGAAGGGATAGAGGGA 58.925 50.000 0.00 0.00 0.00 4.20
295 296 3.172339 CAGATCAGGAAGGGATAGAGGG 58.828 54.545 0.00 0.00 0.00 4.30
296 297 3.172339 CCAGATCAGGAAGGGATAGAGG 58.828 54.545 0.00 0.00 0.00 3.69
297 298 4.125124 TCCAGATCAGGAAGGGATAGAG 57.875 50.000 4.00 0.00 33.93 2.43
298 299 4.108614 TCATCCAGATCAGGAAGGGATAGA 59.891 45.833 11.31 0.00 41.92 1.98
299 300 4.423913 TCATCCAGATCAGGAAGGGATAG 58.576 47.826 11.31 0.00 41.92 2.08
300 301 4.492182 TCATCCAGATCAGGAAGGGATA 57.508 45.455 11.31 0.00 41.92 2.59
301 302 3.357482 TCATCCAGATCAGGAAGGGAT 57.643 47.619 11.31 2.52 41.92 3.85
302 303 2.774234 GTTCATCCAGATCAGGAAGGGA 59.226 50.000 11.31 6.68 41.92 4.20
303 304 2.158696 GGTTCATCCAGATCAGGAAGGG 60.159 54.545 11.31 4.42 41.92 3.95
304 305 2.158696 GGGTTCATCCAGATCAGGAAGG 60.159 54.545 11.31 6.87 41.92 3.46
305 306 2.158696 GGGGTTCATCCAGATCAGGAAG 60.159 54.545 11.31 7.00 41.92 3.46
306 307 1.846439 GGGGTTCATCCAGATCAGGAA 59.154 52.381 11.31 0.00 41.92 3.36
307 308 1.511613 GGGGTTCATCCAGATCAGGA 58.488 55.000 9.57 9.57 43.01 3.86
308 309 0.107456 CGGGGTTCATCCAGATCAGG 59.893 60.000 0.00 0.00 38.11 3.86
309 310 1.123077 TCGGGGTTCATCCAGATCAG 58.877 55.000 0.00 0.00 38.11 2.90
310 311 0.830648 GTCGGGGTTCATCCAGATCA 59.169 55.000 0.00 0.00 38.11 2.92
311 312 0.249489 CGTCGGGGTTCATCCAGATC 60.249 60.000 0.00 0.00 38.11 2.75
312 313 0.686441 TCGTCGGGGTTCATCCAGAT 60.686 55.000 0.00 0.00 38.11 2.90
313 314 1.304630 TCGTCGGGGTTCATCCAGA 60.305 57.895 0.00 0.00 38.11 3.86
314 315 1.153628 GTCGTCGGGGTTCATCCAG 60.154 63.158 0.00 0.00 38.11 3.86
315 316 2.652095 GGTCGTCGGGGTTCATCCA 61.652 63.158 0.00 0.00 38.11 3.41
316 317 2.186125 GGTCGTCGGGGTTCATCC 59.814 66.667 0.00 0.00 0.00 3.51
317 318 2.186125 GGGTCGTCGGGGTTCATC 59.814 66.667 0.00 0.00 0.00 2.92
318 319 3.396570 GGGGTCGTCGGGGTTCAT 61.397 66.667 0.00 0.00 0.00 2.57
349 350 5.432645 GAGATGAAGAAGAAACTTAGGGGG 58.567 45.833 0.00 0.00 0.00 5.40
350 351 5.045578 TGGAGATGAAGAAGAAACTTAGGGG 60.046 44.000 0.00 0.00 0.00 4.79
351 352 6.054860 TGGAGATGAAGAAGAAACTTAGGG 57.945 41.667 0.00 0.00 0.00 3.53
352 353 6.765512 GGATGGAGATGAAGAAGAAACTTAGG 59.234 42.308 0.00 0.00 0.00 2.69
353 354 6.478344 CGGATGGAGATGAAGAAGAAACTTAG 59.522 42.308 0.00 0.00 0.00 2.18
354 355 6.341316 CGGATGGAGATGAAGAAGAAACTTA 58.659 40.000 0.00 0.00 0.00 2.24
355 356 5.181748 CGGATGGAGATGAAGAAGAAACTT 58.818 41.667 0.00 0.00 0.00 2.66
356 357 4.383552 CCGGATGGAGATGAAGAAGAAACT 60.384 45.833 0.00 0.00 37.49 2.66
357 358 3.873952 CCGGATGGAGATGAAGAAGAAAC 59.126 47.826 0.00 0.00 37.49 2.78
358 359 3.118261 CCCGGATGGAGATGAAGAAGAAA 60.118 47.826 0.73 0.00 37.49 2.52
359 360 2.435805 CCCGGATGGAGATGAAGAAGAA 59.564 50.000 0.73 0.00 37.49 2.52
360 361 2.042464 CCCGGATGGAGATGAAGAAGA 58.958 52.381 0.73 0.00 37.49 2.87
361 362 2.042464 TCCCGGATGGAGATGAAGAAG 58.958 52.381 0.73 0.00 38.61 2.85
362 363 1.762957 GTCCCGGATGGAGATGAAGAA 59.237 52.381 0.73 0.00 46.38 2.52
363 364 1.342975 TGTCCCGGATGGAGATGAAGA 60.343 52.381 0.73 0.00 46.38 2.87
364 365 1.123077 TGTCCCGGATGGAGATGAAG 58.877 55.000 0.73 0.00 46.38 3.02
365 366 0.830648 GTGTCCCGGATGGAGATGAA 59.169 55.000 0.73 0.00 46.38 2.57
366 367 1.391933 CGTGTCCCGGATGGAGATGA 61.392 60.000 0.73 0.00 46.38 2.92
367 368 1.068083 CGTGTCCCGGATGGAGATG 59.932 63.158 0.73 0.00 46.38 2.90
368 369 3.538614 CGTGTCCCGGATGGAGAT 58.461 61.111 0.73 0.00 46.38 2.75
412 413 4.899239 GGATGGCACGAGGAGCGG 62.899 72.222 0.00 0.00 46.49 5.52
414 415 4.554036 GGGGATGGCACGAGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
415 416 3.083349 TGGGGATGGCACGAGGAG 61.083 66.667 0.00 0.00 0.00 3.69
416 417 3.399181 GTGGGGATGGCACGAGGA 61.399 66.667 0.00 0.00 0.00 3.71
417 418 4.489771 GGTGGGGATGGCACGAGG 62.490 72.222 0.00 0.00 0.00 4.63
418 419 2.876368 GAAGGTGGGGATGGCACGAG 62.876 65.000 0.00 0.00 0.00 4.18
419 420 2.933287 AAGGTGGGGATGGCACGA 60.933 61.111 0.00 0.00 0.00 4.35
420 421 2.438434 GAAGGTGGGGATGGCACG 60.438 66.667 0.00 0.00 0.00 5.34
421 422 2.438434 CGAAGGTGGGGATGGCAC 60.438 66.667 0.00 0.00 0.00 5.01
434 435 0.739462 TGTTATGCAGGACGCCGAAG 60.739 55.000 0.00 0.00 41.33 3.79
435 436 0.739462 CTGTTATGCAGGACGCCGAA 60.739 55.000 0.00 0.00 41.42 4.30
436 437 1.153647 CTGTTATGCAGGACGCCGA 60.154 57.895 0.00 0.00 41.42 5.54
437 438 0.739462 TTCTGTTATGCAGGACGCCG 60.739 55.000 0.00 0.00 45.08 6.46
438 439 1.448985 TTTCTGTTATGCAGGACGCC 58.551 50.000 0.00 0.00 45.08 5.68
439 440 2.677836 TGATTTCTGTTATGCAGGACGC 59.322 45.455 0.00 0.00 45.08 5.19
440 441 4.437390 GGTTGATTTCTGTTATGCAGGACG 60.437 45.833 0.00 0.00 45.08 4.79
441 442 4.437390 CGGTTGATTTCTGTTATGCAGGAC 60.437 45.833 0.00 0.00 45.08 3.85
442 443 3.689161 CGGTTGATTTCTGTTATGCAGGA 59.311 43.478 0.00 0.00 45.08 3.86
443 444 3.689161 TCGGTTGATTTCTGTTATGCAGG 59.311 43.478 0.00 0.00 45.08 4.85
444 445 4.651994 GTCGGTTGATTTCTGTTATGCAG 58.348 43.478 0.00 0.00 46.34 4.41
445 446 3.124466 CGTCGGTTGATTTCTGTTATGCA 59.876 43.478 0.00 0.00 0.00 3.96
446 447 3.124636 ACGTCGGTTGATTTCTGTTATGC 59.875 43.478 0.00 0.00 0.00 3.14
447 448 4.387559 TCACGTCGGTTGATTTCTGTTATG 59.612 41.667 0.00 0.00 0.00 1.90
448 449 4.562082 TCACGTCGGTTGATTTCTGTTAT 58.438 39.130 0.00 0.00 0.00 1.89
449 450 3.979948 TCACGTCGGTTGATTTCTGTTA 58.020 40.909 0.00 0.00 0.00 2.41
450 451 2.800544 CTCACGTCGGTTGATTTCTGTT 59.199 45.455 0.00 0.00 0.00 3.16
451 452 2.404215 CTCACGTCGGTTGATTTCTGT 58.596 47.619 0.00 0.00 0.00 3.41
452 453 1.726791 CCTCACGTCGGTTGATTTCTG 59.273 52.381 0.00 0.00 0.00 3.02
453 454 1.616865 TCCTCACGTCGGTTGATTTCT 59.383 47.619 0.00 0.00 0.00 2.52
454 455 2.074547 TCCTCACGTCGGTTGATTTC 57.925 50.000 0.00 0.00 0.00 2.17
455 456 2.536761 TTCCTCACGTCGGTTGATTT 57.463 45.000 0.00 0.00 0.00 2.17
456 457 2.536761 TTTCCTCACGTCGGTTGATT 57.463 45.000 0.00 0.00 0.00 2.57
457 458 2.536761 TTTTCCTCACGTCGGTTGAT 57.463 45.000 0.00 0.00 0.00 2.57
458 459 2.312722 TTTTTCCTCACGTCGGTTGA 57.687 45.000 0.00 0.00 0.00 3.18
474 475 6.868339 CGAAATCTTAGGTGCCTCAAATTTTT 59.132 34.615 0.00 0.00 0.00 1.94
475 476 6.389906 CGAAATCTTAGGTGCCTCAAATTTT 58.610 36.000 0.00 0.00 0.00 1.82
476 477 5.622233 GCGAAATCTTAGGTGCCTCAAATTT 60.622 40.000 0.00 0.00 0.00 1.82
477 478 4.142381 GCGAAATCTTAGGTGCCTCAAATT 60.142 41.667 0.00 0.00 0.00 1.82
478 479 3.378427 GCGAAATCTTAGGTGCCTCAAAT 59.622 43.478 0.00 0.00 0.00 2.32
479 480 2.747446 GCGAAATCTTAGGTGCCTCAAA 59.253 45.455 0.00 0.00 0.00 2.69
480 481 2.290008 TGCGAAATCTTAGGTGCCTCAA 60.290 45.455 0.00 0.00 0.00 3.02
481 482 1.277842 TGCGAAATCTTAGGTGCCTCA 59.722 47.619 0.00 0.00 0.00 3.86
482 483 2.024176 TGCGAAATCTTAGGTGCCTC 57.976 50.000 0.00 0.00 0.00 4.70
487 488 3.404899 TCGGTTTTGCGAAATCTTAGGT 58.595 40.909 8.06 0.00 0.00 3.08
498 499 6.324522 TGCATAAATTATTTCGGTTTTGCG 57.675 33.333 0.00 0.00 0.00 4.85
505 506 5.728049 CGTATCGCTGCATAAATTATTTCGG 59.272 40.000 0.00 0.00 0.00 4.30
513 514 6.617879 TCTATGTACGTATCGCTGCATAAAT 58.382 36.000 0.00 0.00 0.00 1.40
544 547 3.306019 CCAACTATTCAAGCGCCCTTTTT 60.306 43.478 2.29 0.00 0.00 1.94
545 548 2.231235 CCAACTATTCAAGCGCCCTTTT 59.769 45.455 2.29 0.00 0.00 2.27
598 601 1.460273 TTTGCCCGGCTTCTGGTTTC 61.460 55.000 11.61 0.00 0.00 2.78
885 895 2.203998 AGAGGAGGGTGGTGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
1530 1550 3.123620 GTCTGAGGCTGCGGCTTG 61.124 66.667 18.85 5.43 38.98 4.01
1531 1551 4.749310 CGTCTGAGGCTGCGGCTT 62.749 66.667 18.85 10.48 38.98 4.35
1951 1987 8.204836 GGTAAAAGAGTCCATCAAATAGCTCTA 58.795 37.037 0.00 0.00 33.55 2.43
2092 2131 3.788227 AAATGCACCCTAGAACAGACA 57.212 42.857 0.00 0.00 0.00 3.41
2103 3745 0.240945 CGGACTGACAAAATGCACCC 59.759 55.000 0.00 0.00 0.00 4.61
2122 3765 7.120432 GCTTAGATTTCAGGATCCAATCATACC 59.880 40.741 19.96 6.98 30.51 2.73
2158 3801 1.810030 CAGGAAGCCGTAGAACCGC 60.810 63.158 0.00 0.00 0.00 5.68
2213 3857 3.846360 CGGACGTAAAAGAACCAGAGAT 58.154 45.455 0.00 0.00 0.00 2.75
2270 3916 1.276622 AACGGAGGGAGTAGCATTGT 58.723 50.000 0.00 0.00 0.00 2.71
2417 4065 7.601130 TGTATCTACATACGAAGCAAAACAAGT 59.399 33.333 0.00 0.00 38.22 3.16
2420 4068 7.892778 TTGTATCTACATACGAAGCAAAACA 57.107 32.000 0.00 0.00 38.22 2.83
2421 4069 7.373441 GCATTGTATCTACATACGAAGCAAAAC 59.627 37.037 0.00 0.00 40.87 2.43
2429 4077 7.812669 CCATTGTAGCATTGTATCTACATACGA 59.187 37.037 3.35 0.00 43.03 3.43
2430 4078 7.411912 GCCATTGTAGCATTGTATCTACATACG 60.412 40.741 3.35 0.00 43.03 3.06
2431 4079 7.411912 CGCCATTGTAGCATTGTATCTACATAC 60.412 40.741 3.35 0.00 43.03 2.39
2436 4084 3.745975 GCGCCATTGTAGCATTGTATCTA 59.254 43.478 0.00 0.00 0.00 1.98
2438 4086 2.350772 GGCGCCATTGTAGCATTGTATC 60.351 50.000 24.80 0.00 0.00 2.24
2458 4157 2.040278 TCCTTCTTCAAGATGTGTGGGG 59.960 50.000 0.00 0.00 0.00 4.96
2463 4162 3.349927 TGGCATCCTTCTTCAAGATGTG 58.650 45.455 0.00 0.00 0.00 3.21
2464 4163 3.726557 TGGCATCCTTCTTCAAGATGT 57.273 42.857 0.00 0.00 0.00 3.06
2482 4181 5.357878 TCAGAAAATCCAATTCTTCCGATGG 59.642 40.000 0.00 0.00 34.99 3.51
2510 4209 6.377712 TCCACAATGTAATCATGCATTTCTGA 59.622 34.615 0.00 0.00 39.48 3.27
2524 4223 5.221283 CCATATGCAAGCATCCACAATGTAA 60.221 40.000 11.32 0.00 37.71 2.41
2526 4225 3.069016 CCATATGCAAGCATCCACAATGT 59.931 43.478 11.32 0.00 37.71 2.71
2556 4255 4.569943 AGATACTTGTCGCACAAATCTGT 58.430 39.130 11.87 6.32 35.50 3.41
2567 4266 2.099263 ACACATCCGGAGATACTTGTCG 59.901 50.000 11.34 5.99 0.00 4.35
2587 4286 2.423892 TGCTCTCTGACATCGAAGGTAC 59.576 50.000 0.00 0.00 0.00 3.34
2594 4293 1.409227 GCACGTGCTCTCTGACATCG 61.409 60.000 32.55 0.00 38.21 3.84
2601 4300 1.270518 ACATTTCTGCACGTGCTCTCT 60.271 47.619 37.59 17.86 42.66 3.10
2617 4316 9.314321 CGTAGTAGAAAATCTGACCATAACATT 57.686 33.333 0.00 0.00 0.00 2.71
2626 4325 6.561614 TGACCATCGTAGTAGAAAATCTGAC 58.438 40.000 0.00 0.00 0.00 3.51
2641 4340 1.142060 TCCAAACACCTTGACCATCGT 59.858 47.619 0.00 0.00 37.17 3.73
2644 4343 1.499007 AGGTCCAAACACCTTGACCAT 59.501 47.619 9.92 0.00 45.24 3.55
2739 4441 3.529533 ACAATCAAGAGATCCGAGCAAG 58.470 45.455 0.00 0.00 31.90 4.01
2760 4462 5.423015 GAGTTCTTTCATCTCCACTGCATA 58.577 41.667 0.00 0.00 0.00 3.14
2766 4468 2.992593 GGGGAGTTCTTTCATCTCCAC 58.007 52.381 11.65 5.02 46.61 4.02
2783 4485 1.075536 ACCCTTGTAGAGCTTTTGGGG 59.924 52.381 0.00 9.74 37.56 4.96
2803 4505 7.829211 GTGCTTCTTAATATGGCCCTGATATTA 59.171 37.037 0.00 5.10 30.37 0.98
2818 4520 7.715657 TCAAGAATGTTGTTGTGCTTCTTAAT 58.284 30.769 3.06 0.00 35.12 1.40
2834 4536 4.170292 GATGCAACTGCTTCAAGAATGT 57.830 40.909 11.53 0.00 42.61 2.71
2893 4598 4.212143 TGATGTCTTTGTGAGATCCAGG 57.788 45.455 0.00 0.00 42.73 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.