Multiple sequence alignment - TraesCS2A01G271000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G271000 chr2A 100.000 5430 0 0 1 5430 442574092 442579521 0.000000e+00 10028.0
1 TraesCS2A01G271000 chr2A 86.284 1378 142 26 4067 5430 681592434 681593778 0.000000e+00 1454.0
2 TraesCS2A01G271000 chr2A 87.088 728 57 22 9 705 441274728 441275449 0.000000e+00 789.0
3 TraesCS2A01G271000 chr2A 93.462 413 27 0 3482 3894 259176065 259176477 1.000000e-171 614.0
4 TraesCS2A01G271000 chr2A 93.462 413 26 1 3482 3894 730137824 730138235 3.600000e-171 612.0
5 TraesCS2A01G271000 chr2A 91.572 439 30 6 3471 3905 599402073 599402508 2.800000e-167 599.0
6 TraesCS2A01G271000 chr2A 82.857 490 61 13 730 1217 441275444 441275912 8.410000e-113 418.0
7 TraesCS2A01G271000 chr2A 78.486 251 29 12 466 692 379597774 379597525 2.040000e-29 141.0
8 TraesCS2A01G271000 chr2A 82.474 97 11 6 2953 3047 270503268 270503176 4.510000e-11 80.5
9 TraesCS2A01G271000 chr1A 91.212 1559 92 17 3883 5430 325510625 325512149 0.000000e+00 2078.0
10 TraesCS2A01G271000 chr1A 86.495 1281 112 34 9 1258 238875725 238874475 0.000000e+00 1351.0
11 TraesCS2A01G271000 chr1A 86.941 827 91 11 3082 3894 191143419 191142596 0.000000e+00 913.0
12 TraesCS2A01G271000 chr1A 85.056 629 77 16 3270 3891 235803451 235804069 4.620000e-175 625.0
13 TraesCS2A01G271000 chr1A 80.375 586 97 9 4070 4646 523691044 523691620 3.890000e-116 429.0
14 TraesCS2A01G271000 chr1A 83.471 363 47 9 891 1252 11294469 11294819 5.250000e-85 326.0
15 TraesCS2A01G271000 chr1A 77.895 285 37 13 455 714 11294197 11294480 2.620000e-33 154.0
16 TraesCS2A01G271000 chr1A 88.000 125 14 1 770 893 518177988 518177864 4.380000e-31 147.0
17 TraesCS2A01G271000 chr1A 82.105 95 12 5 2955 3047 527773750 527773841 5.830000e-10 76.8
18 TraesCS2A01G271000 chr6D 90.331 1572 127 22 1261 2824 329761492 329759938 0.000000e+00 2037.0
19 TraesCS2A01G271000 chr6D 89.975 1576 125 26 1257 2823 350808984 350810535 0.000000e+00 2004.0
20 TraesCS2A01G271000 chr6D 86.579 1289 119 21 1 1256 379605184 379603917 0.000000e+00 1373.0
21 TraesCS2A01G271000 chr6D 84.663 489 64 7 4162 4646 165330203 165330684 1.370000e-130 477.0
22 TraesCS2A01G271000 chr6D 82.819 227 19 10 2841 3048 91388473 91388698 9.290000e-43 185.0
23 TraesCS2A01G271000 chr2D 90.063 1590 127 25 1247 2824 328387017 328385447 0.000000e+00 2032.0
24 TraesCS2A01G271000 chr2D 89.740 1579 134 25 1257 2824 344108983 344110544 0.000000e+00 1993.0
25 TraesCS2A01G271000 chr2D 89.753 1581 129 28 1257 2823 372644004 372642443 0.000000e+00 1991.0
26 TraesCS2A01G271000 chr2D 73.521 355 59 28 5103 5430 142198214 142197868 9.620000e-18 102.0
27 TraesCS2A01G271000 chr2D 83.929 112 6 7 2834 2933 429513818 429513929 4.480000e-16 97.1
28 TraesCS2A01G271000 chr3D 90.184 1579 123 28 1259 2823 330745318 330743758 0.000000e+00 2028.0
29 TraesCS2A01G271000 chr3D 89.557 1580 132 28 1257 2827 209783667 209785222 0.000000e+00 1973.0
30 TraesCS2A01G271000 chr3D 83.916 572 77 13 3082 3648 613355059 613355620 2.880000e-147 532.0
31 TraesCS2A01G271000 chr3D 92.063 63 5 0 2986 3048 213199915 213199977 7.490000e-14 89.8
32 TraesCS2A01G271000 chr4D 90.179 1568 130 19 1258 2818 234366497 234368047 0.000000e+00 2021.0
33 TraesCS2A01G271000 chr1D 89.848 1576 134 22 1257 2823 372736746 372735188 0.000000e+00 2001.0
34 TraesCS2A01G271000 chr1D 86.307 482 44 6 29 507 171154553 171154091 6.280000e-139 505.0
35 TraesCS2A01G271000 chr1D 85.676 370 49 4 891 1258 171145341 171144974 2.370000e-103 387.0
36 TraesCS2A01G271000 chr7B 90.170 1526 114 13 3915 5430 541276048 541277547 0.000000e+00 1954.0
37 TraesCS2A01G271000 chr1B 91.838 1213 84 8 3883 5085 9449999 9448792 0.000000e+00 1677.0
38 TraesCS2A01G271000 chr1B 85.312 1280 136 22 1 1252 319425666 319426921 0.000000e+00 1275.0
39 TraesCS2A01G271000 chr1B 94.101 356 16 4 5077 5430 9448422 9448070 2.230000e-148 536.0
40 TraesCS2A01G271000 chr1B 88.571 420 43 4 3082 3496 435143750 435144169 6.280000e-139 505.0
41 TraesCS2A01G271000 chr1B 79.955 449 51 22 55 497 303864219 303863804 1.480000e-75 294.0
42 TraesCS2A01G271000 chr6B 88.616 1344 118 17 4096 5430 625843045 625841728 0.000000e+00 1602.0
43 TraesCS2A01G271000 chr6B 85.217 1150 119 14 136 1258 182404245 182403120 0.000000e+00 1134.0
44 TraesCS2A01G271000 chr6B 86.376 367 47 3 891 1255 502102803 502103168 1.100000e-106 398.0
45 TraesCS2A01G271000 chr6A 87.713 1351 128 17 4092 5430 149913088 149914412 0.000000e+00 1541.0
46 TraesCS2A01G271000 chr6A 85.097 1295 137 31 1 1258 297917611 297918886 0.000000e+00 1271.0
47 TraesCS2A01G271000 chr6A 88.819 796 80 6 3082 3874 200746590 200747379 0.000000e+00 968.0
48 TraesCS2A01G271000 chr6A 92.941 425 29 1 3471 3894 31887164 31887588 7.730000e-173 617.0
49 TraesCS2A01G271000 chr6A 87.556 450 48 7 3052 3496 589036361 589036807 1.040000e-141 514.0
50 TraesCS2A01G271000 chr6A 86.979 192 21 2 336 524 456671303 456671113 4.260000e-51 213.0
51 TraesCS2A01G271000 chr6A 90.385 156 15 0 2890 3045 297919002 297919157 7.130000e-49 206.0
52 TraesCS2A01G271000 chr6A 79.078 282 33 13 458 714 456670018 456669738 2.600000e-38 171.0
53 TraesCS2A01G271000 chr6A 84.000 100 15 1 2984 3082 518075573 518075672 1.610000e-15 95.3
54 TraesCS2A01G271000 chr5B 87.097 1364 119 29 4070 5430 311843383 311842074 0.000000e+00 1491.0
55 TraesCS2A01G271000 chr5B 86.842 76 9 1 2968 3043 488456354 488456428 3.490000e-12 84.2
56 TraesCS2A01G271000 chr7A 85.366 1148 108 19 9 1129 583728609 583727495 0.000000e+00 1134.0
57 TraesCS2A01G271000 chr7A 86.702 564 67 7 3082 3642 586364657 586364099 2.150000e-173 619.0
58 TraesCS2A01G271000 chr7A 91.917 433 32 3 3465 3894 247378221 247378653 2.160000e-168 603.0
59 TraesCS2A01G271000 chr7A 88.067 419 46 4 3082 3496 723772631 723772213 1.360000e-135 494.0
60 TraesCS2A01G271000 chr7A 77.931 290 37 10 450 714 269562027 269562314 7.280000e-34 156.0
61 TraesCS2A01G271000 chr7A 86.047 129 17 1 767 894 138609485 138609613 2.640000e-28 137.0
62 TraesCS2A01G271000 chr4A 92.891 422 29 1 3474 3894 107086980 107086559 3.600000e-171 612.0
63 TraesCS2A01G271000 chr4A 93.846 65 4 0 2984 3048 288778122 288778058 1.240000e-16 99.0
64 TraesCS2A01G271000 chr5D 88.865 458 32 4 1 456 31006714 31007154 3.700000e-151 545.0
65 TraesCS2A01G271000 chr5D 86.907 443 54 3 4204 4646 169017086 169017524 1.360000e-135 494.0
66 TraesCS2A01G271000 chr5D 86.885 366 40 5 891 1255 31007835 31008193 2.360000e-108 403.0
67 TraesCS2A01G271000 chr5D 82.289 463 70 7 4121 4574 536211113 536210654 1.830000e-104 390.0
68 TraesCS2A01G271000 chr5D 86.027 365 44 4 891 1255 305988353 305988710 8.530000e-103 385.0
69 TraesCS2A01G271000 chr5D 82.479 234 35 6 2817 3044 31008185 31008418 3.320000e-47 200.0
70 TraesCS2A01G271000 chr5D 85.271 129 16 3 767 893 227571320 227571193 4.410000e-26 130.0
71 TraesCS2A01G271000 chr5D 82.692 104 9 7 2834 2929 305988719 305988821 3.490000e-12 84.2
72 TraesCS2A01G271000 chr2B 88.210 458 37 9 1 456 565795122 565794680 1.040000e-146 531.0
73 TraesCS2A01G271000 chr2B 82.423 586 85 14 4070 4646 197567726 197568302 3.780000e-136 496.0
74 TraesCS2A01G271000 chrUn 87.253 455 51 6 3047 3496 29752270 29752722 3.750000e-141 512.0
75 TraesCS2A01G271000 chr4B 91.429 70 5 1 2977 3046 327119601 327119533 1.610000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G271000 chr2A 442574092 442579521 5429 False 10028.000000 10028 100.000000 1 5430 1 chr2A.!!$F2 5429
1 TraesCS2A01G271000 chr2A 681592434 681593778 1344 False 1454.000000 1454 86.284000 4067 5430 1 chr2A.!!$F4 1363
2 TraesCS2A01G271000 chr2A 441274728 441275912 1184 False 603.500000 789 84.972500 9 1217 2 chr2A.!!$F6 1208
3 TraesCS2A01G271000 chr1A 325510625 325512149 1524 False 2078.000000 2078 91.212000 3883 5430 1 chr1A.!!$F2 1547
4 TraesCS2A01G271000 chr1A 238874475 238875725 1250 True 1351.000000 1351 86.495000 9 1258 1 chr1A.!!$R2 1249
5 TraesCS2A01G271000 chr1A 191142596 191143419 823 True 913.000000 913 86.941000 3082 3894 1 chr1A.!!$R1 812
6 TraesCS2A01G271000 chr1A 235803451 235804069 618 False 625.000000 625 85.056000 3270 3891 1 chr1A.!!$F1 621
7 TraesCS2A01G271000 chr1A 523691044 523691620 576 False 429.000000 429 80.375000 4070 4646 1 chr1A.!!$F3 576
8 TraesCS2A01G271000 chr1A 11294197 11294819 622 False 240.000000 326 80.683000 455 1252 2 chr1A.!!$F5 797
9 TraesCS2A01G271000 chr6D 329759938 329761492 1554 True 2037.000000 2037 90.331000 1261 2824 1 chr6D.!!$R1 1563
10 TraesCS2A01G271000 chr6D 350808984 350810535 1551 False 2004.000000 2004 89.975000 1257 2823 1 chr6D.!!$F3 1566
11 TraesCS2A01G271000 chr6D 379603917 379605184 1267 True 1373.000000 1373 86.579000 1 1256 1 chr6D.!!$R2 1255
12 TraesCS2A01G271000 chr2D 328385447 328387017 1570 True 2032.000000 2032 90.063000 1247 2824 1 chr2D.!!$R2 1577
13 TraesCS2A01G271000 chr2D 344108983 344110544 1561 False 1993.000000 1993 89.740000 1257 2824 1 chr2D.!!$F1 1567
14 TraesCS2A01G271000 chr2D 372642443 372644004 1561 True 1991.000000 1991 89.753000 1257 2823 1 chr2D.!!$R3 1566
15 TraesCS2A01G271000 chr3D 330743758 330745318 1560 True 2028.000000 2028 90.184000 1259 2823 1 chr3D.!!$R1 1564
16 TraesCS2A01G271000 chr3D 209783667 209785222 1555 False 1973.000000 1973 89.557000 1257 2827 1 chr3D.!!$F1 1570
17 TraesCS2A01G271000 chr3D 613355059 613355620 561 False 532.000000 532 83.916000 3082 3648 1 chr3D.!!$F3 566
18 TraesCS2A01G271000 chr4D 234366497 234368047 1550 False 2021.000000 2021 90.179000 1258 2818 1 chr4D.!!$F1 1560
19 TraesCS2A01G271000 chr1D 372735188 372736746 1558 True 2001.000000 2001 89.848000 1257 2823 1 chr1D.!!$R3 1566
20 TraesCS2A01G271000 chr7B 541276048 541277547 1499 False 1954.000000 1954 90.170000 3915 5430 1 chr7B.!!$F1 1515
21 TraesCS2A01G271000 chr1B 319425666 319426921 1255 False 1275.000000 1275 85.312000 1 1252 1 chr1B.!!$F1 1251
22 TraesCS2A01G271000 chr1B 9448070 9449999 1929 True 1106.500000 1677 92.969500 3883 5430 2 chr1B.!!$R2 1547
23 TraesCS2A01G271000 chr6B 625841728 625843045 1317 True 1602.000000 1602 88.616000 4096 5430 1 chr6B.!!$R2 1334
24 TraesCS2A01G271000 chr6B 182403120 182404245 1125 True 1134.000000 1134 85.217000 136 1258 1 chr6B.!!$R1 1122
25 TraesCS2A01G271000 chr6A 149913088 149914412 1324 False 1541.000000 1541 87.713000 4092 5430 1 chr6A.!!$F2 1338
26 TraesCS2A01G271000 chr6A 200746590 200747379 789 False 968.000000 968 88.819000 3082 3874 1 chr6A.!!$F3 792
27 TraesCS2A01G271000 chr6A 297917611 297919157 1546 False 738.500000 1271 87.741000 1 3045 2 chr6A.!!$F6 3044
28 TraesCS2A01G271000 chr5B 311842074 311843383 1309 True 1491.000000 1491 87.097000 4070 5430 1 chr5B.!!$R1 1360
29 TraesCS2A01G271000 chr7A 583727495 583728609 1114 True 1134.000000 1134 85.366000 9 1129 1 chr7A.!!$R1 1120
30 TraesCS2A01G271000 chr7A 586364099 586364657 558 True 619.000000 619 86.702000 3082 3642 1 chr7A.!!$R2 560
31 TraesCS2A01G271000 chr5D 31006714 31008418 1704 False 382.666667 545 86.076333 1 3044 3 chr5D.!!$F2 3043
32 TraesCS2A01G271000 chr2B 197567726 197568302 576 False 496.000000 496 82.423000 4070 4646 1 chr2B.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 111 0.035820 CCGACCTTCCGAATTTCCCA 60.036 55.0 0.00 0.0 0.00 4.37 F
763 1232 0.250901 GTCCAAGCTCTTCCTGCCAA 60.251 55.0 0.00 0.0 0.00 4.52 F
1666 2154 0.250553 CGAGGGTAGCCACAAAACCA 60.251 55.0 14.62 0.0 34.83 3.67 F
2674 3179 0.041312 CGTTGGTTGCGAGGTTCTTG 60.041 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 2014 0.035458 CCTCGTGTCCTCCTTGCTTT 59.965 55.0 0.00 0.0 0.00 3.51 R
1710 2198 0.963856 AATCGCCGAAAAAGGTCCCC 60.964 55.0 0.00 0.0 0.00 4.81 R
2807 3313 0.528470 GACGTGCTACCTCTTGAGCT 59.472 55.0 0.00 0.0 39.54 4.09 R
4652 5291 0.178975 ATCTAGAGCTCGGTGAGGGG 60.179 60.0 8.37 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 3.825014 GAGACACTAGTGGGTTGAGTACA 59.175 47.826 26.12 0.00 34.19 2.90
38 41 4.220821 AGACACTAGTGGGTTGAGTACATG 59.779 45.833 26.12 0.00 34.19 3.21
76 79 5.550290 TCAACACTGATGCATGAACTTCTA 58.450 37.500 2.46 0.00 0.00 2.10
108 111 0.035820 CCGACCTTCCGAATTTCCCA 60.036 55.000 0.00 0.00 0.00 4.37
271 276 2.291465 CTCCACCACACACATGTTCTTG 59.709 50.000 0.00 0.00 36.72 3.02
324 348 1.705002 CCTCAACCTCACCACCACCA 61.705 60.000 0.00 0.00 0.00 4.17
325 349 0.535102 CTCAACCTCACCACCACCAC 60.535 60.000 0.00 0.00 0.00 4.16
328 352 2.113139 CCTCACCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
329 353 2.113139 CTCACCACCACCACCACC 59.887 66.667 0.00 0.00 0.00 4.61
331 355 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
333 357 2.518349 CCACCACCACCACCACAC 60.518 66.667 0.00 0.00 0.00 3.82
334 358 2.273776 CACCACCACCACCACACA 59.726 61.111 0.00 0.00 0.00 3.72
335 359 2.118404 CACCACCACCACCACACAC 61.118 63.158 0.00 0.00 0.00 3.82
336 360 2.273776 CCACCACCACCACACACA 59.726 61.111 0.00 0.00 0.00 3.72
477 713 2.096218 GTGACATCAAACTGAAGCGGTC 60.096 50.000 0.00 0.00 0.00 4.79
520 956 0.657840 GATACGCCGCTGCAGAATTT 59.342 50.000 20.43 0.00 37.32 1.82
523 961 1.094785 ACGCCGCTGCAGAATTTAAT 58.905 45.000 20.43 0.00 37.32 1.40
537 975 7.147966 TGCAGAATTTAATGAGCAGAATGTGAT 60.148 33.333 0.00 0.00 39.31 3.06
575 1017 5.882557 CCAAGACAATAGGAGTAAGCAACAT 59.117 40.000 0.00 0.00 0.00 2.71
581 1023 2.269940 AGGAGTAAGCAACATGAGGGT 58.730 47.619 0.00 0.00 0.00 4.34
591 1033 0.693049 ACATGAGGGTGGAAGGTCAC 59.307 55.000 0.00 0.00 36.95 3.67
630 1096 3.239253 GGTGGTGGTCGTCCCAGT 61.239 66.667 0.00 0.00 46.45 4.00
762 1231 1.376466 GTCCAAGCTCTTCCTGCCA 59.624 57.895 0.00 0.00 0.00 4.92
763 1232 0.250901 GTCCAAGCTCTTCCTGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
834 1303 2.603776 GGGAGGTGGAGGTCGTGT 60.604 66.667 0.00 0.00 0.00 4.49
835 1304 1.304713 GGGAGGTGGAGGTCGTGTA 60.305 63.158 0.00 0.00 0.00 2.90
913 1383 4.335647 CTGGGCACAAGGGCTCGT 62.336 66.667 0.00 0.00 42.84 4.18
928 1398 1.229368 TCGTCCCCATCTGGTTCCA 60.229 57.895 0.00 0.00 0.00 3.53
968 1438 2.417936 GCTCGGGGGACTTCGATC 59.582 66.667 0.00 0.00 34.39 3.69
1034 1504 0.832135 ACCTGCGGGAGAACAGAGAA 60.832 55.000 21.41 0.00 35.90 2.87
1038 1508 1.273606 TGCGGGAGAACAGAGAAAGAG 59.726 52.381 0.00 0.00 0.00 2.85
1043 1513 3.056179 GGGAGAACAGAGAAAGAGACAGG 60.056 52.174 0.00 0.00 0.00 4.00
1089 1559 2.157926 AGGAAGAGAGGAAGGGAAGGTT 60.158 50.000 0.00 0.00 0.00 3.50
1093 1563 0.836400 AGAGGAAGGGAAGGTTCGCA 60.836 55.000 9.22 0.00 42.02 5.10
1168 1641 4.195334 GGGCATGGAGGCGGACAT 62.195 66.667 0.00 0.00 45.36 3.06
1189 1662 3.064987 GCGAAGTAGAGGCAGGCGA 62.065 63.158 0.00 0.00 0.00 5.54
1191 1664 1.890894 GAAGTAGAGGCAGGCGACA 59.109 57.895 0.00 0.00 0.00 4.35
1192 1665 0.461961 GAAGTAGAGGCAGGCGACAT 59.538 55.000 0.00 0.00 0.00 3.06
1194 1667 0.684479 AGTAGAGGCAGGCGACATGA 60.684 55.000 0.00 0.00 0.00 3.07
1208 1681 1.889105 CATGACGGCCGGATCCAAG 60.889 63.158 31.76 14.23 0.00 3.61
1209 1682 2.063979 ATGACGGCCGGATCCAAGA 61.064 57.895 31.76 2.82 0.00 3.02
1210 1683 2.202892 GACGGCCGGATCCAAGAC 60.203 66.667 31.76 3.22 0.00 3.01
1211 1684 3.735037 GACGGCCGGATCCAAGACC 62.735 68.421 31.76 5.93 0.00 3.85
1217 1697 2.656069 CGGATCCAAGACCGGTGGT 61.656 63.158 14.63 0.00 44.59 4.16
1221 1703 4.263572 CCAAGACCGGTGGTGCCA 62.264 66.667 14.63 0.00 35.25 4.92
1338 1820 6.098409 TGTTTTGGATGTTTACTGGGCTTTAA 59.902 34.615 0.00 0.00 0.00 1.52
1340 1822 6.926630 TTGGATGTTTACTGGGCTTTAATT 57.073 33.333 0.00 0.00 0.00 1.40
1343 1825 8.423906 TGGATGTTTACTGGGCTTTAATTTAA 57.576 30.769 0.00 0.00 0.00 1.52
1344 1826 8.308207 TGGATGTTTACTGGGCTTTAATTTAAC 58.692 33.333 0.00 0.00 0.00 2.01
1345 1827 8.528643 GGATGTTTACTGGGCTTTAATTTAACT 58.471 33.333 0.00 0.00 0.00 2.24
1346 1828 9.923143 GATGTTTACTGGGCTTTAATTTAACTT 57.077 29.630 0.00 0.00 0.00 2.66
1399 1882 1.130777 AAAGGCCCAGTGCAAATTGT 58.869 45.000 0.00 0.00 43.89 2.71
1463 1948 1.459450 ACGGAATCCAAACGGAATGG 58.541 50.000 0.00 0.00 35.74 3.16
1518 2003 0.603569 TCGAAGAGACTTGGAGTGGC 59.396 55.000 0.00 0.00 0.00 5.01
1529 2014 2.673775 TGGAGTGGCCATCAAGAAAA 57.326 45.000 9.72 0.00 43.33 2.29
1608 2096 2.423898 CGTGGCTCCACCGACCTAT 61.424 63.158 12.99 0.00 43.49 2.57
1652 2140 3.560636 ATACCCTGAAAACATCGAGGG 57.439 47.619 0.69 0.00 45.10 4.30
1653 2141 1.064825 ACCCTGAAAACATCGAGGGT 58.935 50.000 0.69 0.00 46.37 4.34
1655 2143 2.906354 CCCTGAAAACATCGAGGGTAG 58.094 52.381 0.69 0.00 39.64 3.18
1666 2154 0.250553 CGAGGGTAGCCACAAAACCA 60.251 55.000 14.62 0.00 34.83 3.67
1667 2155 1.244816 GAGGGTAGCCACAAAACCAC 58.755 55.000 14.62 0.00 34.83 4.16
1668 2156 0.850784 AGGGTAGCCACAAAACCACT 59.149 50.000 14.62 0.00 34.83 4.00
1710 2198 1.341531 GTACCCGTGAGATCCCATCTG 59.658 57.143 0.00 0.00 40.38 2.90
1729 2217 2.563297 GGGACCTTTTTCGGCGATT 58.437 52.632 11.76 0.00 0.00 3.34
1730 2218 0.885879 GGGACCTTTTTCGGCGATTT 59.114 50.000 11.76 0.00 0.00 2.17
1778 2266 4.384208 GGGCTTCTACATCAACACCATAGT 60.384 45.833 0.00 0.00 0.00 2.12
1783 2271 7.482169 TTCTACATCAACACCATAGTCTCTT 57.518 36.000 0.00 0.00 0.00 2.85
1858 2347 5.760484 AGATGGCTTCTTCTCTCTCTTTT 57.240 39.130 0.00 0.00 0.00 2.27
1906 2395 9.301897 TCGATTCTCTTGGAGATCTATTTGATA 57.698 33.333 0.00 0.00 38.56 2.15
1997 2488 9.559732 TGAACAATAGTTGATTCTTCTCTGAAA 57.440 29.630 0.00 0.00 38.30 2.69
2072 2563 4.058817 GGTTTGGCCTACTAGATTGATCG 58.941 47.826 3.32 0.00 0.00 3.69
2082 2574 6.535150 CCTACTAGATTGATCGTTCTTGCAAA 59.465 38.462 0.00 0.00 0.00 3.68
2088 2580 3.355378 TGATCGTTCTTGCAAATGGGAT 58.645 40.909 0.00 1.48 0.00 3.85
2142 2635 2.697147 TTTCCCAGTGACAGCAGGGC 62.697 60.000 0.00 0.00 41.22 5.19
2267 2760 7.807687 TGCGTTACTCTGTTCTTATAAACTC 57.192 36.000 0.00 0.00 0.00 3.01
2330 2824 9.015367 GGAGTAATAGTAGTAGATGCAGAATCA 57.985 37.037 0.00 0.00 37.81 2.57
2395 2889 7.761249 TGATCATGCCTAGATATTGTCATAACG 59.239 37.037 0.00 0.00 0.00 3.18
2398 2892 8.314021 TCATGCCTAGATATTGTCATAACGATT 58.686 33.333 0.00 0.00 31.65 3.34
2447 2946 3.278668 TTTGTTCACCCACCGTAGAAA 57.721 42.857 0.00 0.00 0.00 2.52
2448 2947 3.495434 TTGTTCACCCACCGTAGAAAT 57.505 42.857 0.00 0.00 0.00 2.17
2489 2988 2.127708 CTAGTGAAACCTATGGCCCCT 58.872 52.381 0.00 0.00 37.80 4.79
2498 2997 1.280457 CTATGGCCCCTGGGTCTATC 58.720 60.000 12.71 0.00 41.25 2.08
2512 3011 7.349330 CCCTGGGTCTATCTTCCATCATATTAT 59.651 40.741 3.97 0.00 0.00 1.28
2619 3124 9.812347 ATTATCTCTATCAGATCTCACTCTTGT 57.188 33.333 0.00 0.00 41.39 3.16
2644 3149 3.499918 GTGACTGTGAAGGGATTGACAAG 59.500 47.826 0.00 0.00 0.00 3.16
2647 3152 1.425066 TGTGAAGGGATTGACAAGCCT 59.575 47.619 21.23 3.05 37.07 4.58
2674 3179 0.041312 CGTTGGTTGCGAGGTTCTTG 60.041 55.000 0.00 0.00 0.00 3.02
2692 3197 6.094464 GGTTCTTGTTTGTTTGTGTAGGTACT 59.906 38.462 0.00 0.00 46.37 2.73
2707 3212 2.299297 AGGTACTAGGTGACTTGTGTGC 59.701 50.000 0.00 0.00 46.03 4.57
2708 3213 2.299297 GGTACTAGGTGACTTGTGTGCT 59.701 50.000 0.00 0.00 46.03 4.40
2720 3225 2.304221 TGTGTGCTACCTCCTACTGT 57.696 50.000 0.00 0.00 0.00 3.55
2738 3243 7.402071 TCCTACTGTATTGATACCTTGGTTCTT 59.598 37.037 0.00 0.00 32.33 2.52
2747 3253 8.754991 TTGATACCTTGGTTCTTAAAACTGAA 57.245 30.769 0.00 0.00 0.00 3.02
2782 3288 0.598680 ACTGTGCTGCGTCACTCTTC 60.599 55.000 9.16 0.00 37.81 2.87
2807 3313 1.475403 TCAAGGGAAAACCAACGCAA 58.525 45.000 0.00 0.00 43.89 4.85
2824 3331 1.354040 CAAGCTCAAGAGGTAGCACG 58.646 55.000 1.79 0.00 41.32 5.34
2825 3332 0.969894 AAGCTCAAGAGGTAGCACGT 59.030 50.000 1.79 0.00 41.32 4.49
2826 3333 0.528470 AGCTCAAGAGGTAGCACGTC 59.472 55.000 0.00 0.00 41.32 4.34
2827 3334 0.528470 GCTCAAGAGGTAGCACGTCT 59.472 55.000 0.00 5.91 44.29 4.18
2935 3503 3.637273 GAGGTGCGGGACTGGGTT 61.637 66.667 0.00 0.00 0.00 4.11
2944 3512 1.235724 GGGACTGGGTTGTTTTCTCG 58.764 55.000 0.00 0.00 0.00 4.04
2949 3517 1.104577 TGGGTTGTTTTCTCGGGTGC 61.105 55.000 0.00 0.00 0.00 5.01
2956 3524 2.381665 TTTTCTCGGGTGCGCGTTTG 62.382 55.000 8.43 0.00 0.00 2.93
2969 3537 1.019278 GCGTTTGCTGGAATCTCGGA 61.019 55.000 0.00 0.00 38.39 4.55
2977 3545 2.096496 GCTGGAATCTCGGAAACATGTG 59.904 50.000 0.00 0.00 0.00 3.21
2980 3548 5.351948 TGGAATCTCGGAAACATGTGATA 57.648 39.130 0.00 0.00 0.00 2.15
2982 3550 5.128663 TGGAATCTCGGAAACATGTGATAGA 59.871 40.000 0.00 0.00 0.00 1.98
3012 3580 1.442526 GGCCAGCTGTGATCCGAATG 61.443 60.000 13.81 0.00 0.00 2.67
3048 3616 9.689501 ATCCTAGGATTAGAATAGTGCTACTAC 57.310 37.037 19.18 0.00 32.84 2.73
3049 3617 8.666821 TCCTAGGATTAGAATAGTGCTACTACA 58.333 37.037 7.62 0.00 32.84 2.74
3050 3618 8.732531 CCTAGGATTAGAATAGTGCTACTACAC 58.267 40.741 1.05 0.00 41.02 2.90
3051 3619 9.286170 CTAGGATTAGAATAGTGCTACTACACA 57.714 37.037 0.00 0.00 43.23 3.72
3052 3620 7.942990 AGGATTAGAATAGTGCTACTACACAC 58.057 38.462 0.00 0.00 43.23 3.82
3053 3621 7.560262 AGGATTAGAATAGTGCTACTACACACA 59.440 37.037 0.00 0.00 43.23 3.72
3054 3622 7.648510 GGATTAGAATAGTGCTACTACACACAC 59.351 40.741 0.00 0.00 43.23 3.82
3055 3623 5.977489 AGAATAGTGCTACTACACACACA 57.023 39.130 0.00 0.00 43.23 3.72
3056 3624 5.710984 AGAATAGTGCTACTACACACACAC 58.289 41.667 0.00 0.00 43.23 3.82
3057 3625 5.243060 AGAATAGTGCTACTACACACACACA 59.757 40.000 0.00 0.00 43.23 3.72
3058 3626 3.093717 AGTGCTACTACACACACACAC 57.906 47.619 0.00 0.00 43.23 3.82
3059 3627 2.429250 AGTGCTACTACACACACACACA 59.571 45.455 0.00 0.00 43.23 3.72
3060 3628 2.538449 GTGCTACTACACACACACACAC 59.462 50.000 0.00 0.00 40.40 3.82
3061 3629 2.166664 TGCTACTACACACACACACACA 59.833 45.455 0.00 0.00 0.00 3.72
3062 3630 2.538449 GCTACTACACACACACACACAC 59.462 50.000 0.00 0.00 0.00 3.82
3063 3631 2.753055 ACTACACACACACACACACA 57.247 45.000 0.00 0.00 0.00 3.72
3064 3632 2.343101 ACTACACACACACACACACAC 58.657 47.619 0.00 0.00 0.00 3.82
3065 3633 2.289133 ACTACACACACACACACACACA 60.289 45.455 0.00 0.00 0.00 3.72
3066 3634 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3067 3635 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3068 3636 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3069 3637 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3070 3638 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3071 3639 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3072 3640 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3073 3641 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3074 3642 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3075 3643 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3076 3644 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3077 3645 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3078 3646 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3079 3647 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3080 3648 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3081 3649 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3082 3650 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
3083 3651 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
3084 3652 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
3085 3653 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
3086 3654 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
3087 3655 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
3088 3656 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
3089 3657 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
3090 3658 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
3116 3684 6.692849 AATATTCATCATCTAGGGTGCAGA 57.307 37.500 0.00 0.00 0.00 4.26
3117 3685 6.692849 ATATTCATCATCTAGGGTGCAGAA 57.307 37.500 0.00 0.00 0.00 3.02
3118 3686 5.579753 ATTCATCATCTAGGGTGCAGAAT 57.420 39.130 0.00 1.10 0.00 2.40
3119 3687 6.692849 ATTCATCATCTAGGGTGCAGAATA 57.307 37.500 0.00 0.00 0.00 1.75
3120 3688 6.499106 TTCATCATCTAGGGTGCAGAATAA 57.501 37.500 0.00 0.00 0.00 1.40
3121 3689 6.106648 TCATCATCTAGGGTGCAGAATAAG 57.893 41.667 0.00 0.00 0.00 1.73
3122 3690 5.604231 TCATCATCTAGGGTGCAGAATAAGT 59.396 40.000 0.00 0.00 0.00 2.24
3123 3691 5.957771 TCATCTAGGGTGCAGAATAAGTT 57.042 39.130 0.00 0.00 0.00 2.66
3124 3692 7.290014 TCATCATCTAGGGTGCAGAATAAGTTA 59.710 37.037 0.00 0.00 0.00 2.24
3125 3693 7.618019 TCATCTAGGGTGCAGAATAAGTTAT 57.382 36.000 0.00 0.00 0.00 1.89
3126 3694 8.034313 TCATCTAGGGTGCAGAATAAGTTATT 57.966 34.615 7.87 7.87 0.00 1.40
3127 3695 8.150945 TCATCTAGGGTGCAGAATAAGTTATTC 58.849 37.037 22.80 22.80 43.77 1.75
3138 3706 6.846325 GAATAAGTTATTCTTCACCCGAGG 57.154 41.667 22.93 0.00 41.00 4.63
3139 3707 5.952347 ATAAGTTATTCTTCACCCGAGGT 57.048 39.130 0.00 0.00 37.56 3.85
3140 3708 7.427989 AATAAGTTATTCTTCACCCGAGGTA 57.572 36.000 2.10 0.00 37.56 3.08
3141 3709 5.750352 AAGTTATTCTTCACCCGAGGTAA 57.250 39.130 0.00 0.00 32.11 2.85
3142 3710 5.952347 AGTTATTCTTCACCCGAGGTAAT 57.048 39.130 0.00 0.00 32.11 1.89
3143 3711 6.309389 AGTTATTCTTCACCCGAGGTAATT 57.691 37.500 0.00 0.00 32.11 1.40
3144 3712 6.718294 AGTTATTCTTCACCCGAGGTAATTT 58.282 36.000 0.00 0.00 32.11 1.82
3145 3713 7.173032 AGTTATTCTTCACCCGAGGTAATTTT 58.827 34.615 0.00 0.00 32.11 1.82
3146 3714 8.323567 AGTTATTCTTCACCCGAGGTAATTTTA 58.676 33.333 0.00 0.00 32.11 1.52
3147 3715 9.117183 GTTATTCTTCACCCGAGGTAATTTTAT 57.883 33.333 0.00 0.00 32.11 1.40
3148 3716 6.995511 TTCTTCACCCGAGGTAATTTTATG 57.004 37.500 0.00 0.00 32.11 1.90
3149 3717 6.302535 TCTTCACCCGAGGTAATTTTATGA 57.697 37.500 0.00 0.00 32.11 2.15
3150 3718 6.895782 TCTTCACCCGAGGTAATTTTATGAT 58.104 36.000 0.00 0.00 32.11 2.45
3151 3719 7.343357 TCTTCACCCGAGGTAATTTTATGATT 58.657 34.615 0.00 0.00 32.11 2.57
3152 3720 8.487848 TCTTCACCCGAGGTAATTTTATGATTA 58.512 33.333 0.00 0.00 32.11 1.75
3153 3721 8.441312 TTCACCCGAGGTAATTTTATGATTAC 57.559 34.615 0.00 0.00 40.26 1.89
3154 3722 7.798071 TCACCCGAGGTAATTTTATGATTACT 58.202 34.615 7.46 0.00 40.61 2.24
3155 3723 8.269317 TCACCCGAGGTAATTTTATGATTACTT 58.731 33.333 7.46 1.06 40.61 2.24
3156 3724 8.557029 CACCCGAGGTAATTTTATGATTACTTC 58.443 37.037 8.82 8.82 41.47 3.01
3157 3725 8.269317 ACCCGAGGTAATTTTATGATTACTTCA 58.731 33.333 15.48 0.00 43.35 3.02
3158 3726 9.284968 CCCGAGGTAATTTTATGATTACTTCAT 57.715 33.333 15.48 0.00 43.35 2.57
3195 3763 9.921637 TGTTTGGAATTCAAGTATTTACATTCC 57.078 29.630 7.93 10.97 40.05 3.01
3223 3791 9.915629 ATTATTTCACTACGTAAAAATTGCCAA 57.084 25.926 12.66 5.15 0.00 4.52
3224 3792 9.745880 TTATTTCACTACGTAAAAATTGCCAAA 57.254 25.926 12.66 2.72 0.00 3.28
3225 3793 8.649973 ATTTCACTACGTAAAAATTGCCAAAA 57.350 26.923 0.00 0.00 0.00 2.44
3226 3794 8.649973 TTTCACTACGTAAAAATTGCCAAAAT 57.350 26.923 0.00 0.00 0.00 1.82
3227 3795 9.745880 TTTCACTACGTAAAAATTGCCAAAATA 57.254 25.926 0.00 0.00 0.00 1.40
3228 3796 9.745880 TTCACTACGTAAAAATTGCCAAAATAA 57.254 25.926 0.00 0.00 0.00 1.40
3229 3797 9.745880 TCACTACGTAAAAATTGCCAAAATAAA 57.254 25.926 0.00 0.00 0.00 1.40
3266 3834 9.574516 AGGTCATAAGACAAGAAAATTTACAGT 57.425 29.630 0.00 0.00 46.80 3.55
3391 3960 9.280174 TCAGAAATAAGACAAAACTTACGGAAT 57.720 29.630 0.00 0.00 35.60 3.01
3413 3982 7.167468 GGAATGTAAAATTACGGTGCATTGATC 59.833 37.037 0.00 0.00 36.45 2.92
3418 3987 4.789095 ATTACGGTGCATTGATCGTAAC 57.211 40.909 17.28 0.00 46.16 2.50
3448 4017 6.678857 AGGAGGGTGAAGAATAACTATTCCTT 59.321 38.462 5.95 1.45 42.29 3.36
3450 4019 8.661345 GGAGGGTGAAGAATAACTATTCCTTAT 58.339 37.037 5.95 0.00 42.29 1.73
3533 4118 3.071874 TCCAGGGTGCAGAATAAGTTG 57.928 47.619 0.00 0.00 0.00 3.16
3541 4126 5.183904 GGGTGCAGAATAAGTTGTTCTTCAT 59.816 40.000 15.43 0.00 32.89 2.57
3777 4362 0.673437 ACGGTCCCTTTTTACGTCGA 59.327 50.000 0.00 0.00 31.39 4.20
3842 4428 8.832735 ACTGATAGTAAAATAGAAGGGGTGAAA 58.167 33.333 0.00 0.00 0.00 2.69
3858 4444 9.506042 AAGGGGTGAAAAATAAATATTCCTCAT 57.494 29.630 0.00 0.00 0.00 2.90
3878 4464 0.739462 CCAAGGTGACGAATAGCGCA 60.739 55.000 11.47 0.00 46.04 6.09
3930 4525 2.201732 CGGAAGTTATGTGGATCACGG 58.798 52.381 0.00 0.00 37.14 4.94
3957 4552 3.194968 CCTATATAGGTGGCGATCGGTTT 59.805 47.826 19.30 0.00 38.69 3.27
3989 4584 2.421424 CCCGAATCTGGAGCAAGAAAAG 59.579 50.000 0.00 0.00 0.00 2.27
4009 4604 1.173913 GAAAAATCCCACTCCCACGG 58.826 55.000 0.00 0.00 0.00 4.94
4063 4659 4.770362 TCCTCGATCCCACCGCCA 62.770 66.667 0.00 0.00 0.00 5.69
4159 4783 4.052518 GCATCCCAGCCACCCAGT 62.053 66.667 0.00 0.00 0.00 4.00
4189 4822 2.499205 CGCACCGCCTTCTATCCA 59.501 61.111 0.00 0.00 0.00 3.41
4192 4825 1.972660 GCACCGCCTTCTATCCACCT 61.973 60.000 0.00 0.00 0.00 4.00
4283 4916 2.616571 TCCACCATCCCCATGCCA 60.617 61.111 0.00 0.00 0.00 4.92
4314 4949 1.971695 CCTGGTTCTTCCCCAACGC 60.972 63.158 0.00 0.00 34.77 4.84
4632 5271 1.445095 GTTGTTGTTGCCATGGCCA 59.555 52.632 33.44 21.36 41.09 5.36
4652 5291 1.450312 CGGCAGTGGATCCCTTGTC 60.450 63.158 9.90 8.19 0.00 3.18
4742 5381 1.590238 GCTCGTGGATTCAATGTCTCG 59.410 52.381 0.00 0.00 0.00 4.04
4760 5399 1.072159 GTGTGCACCCAAGAGCTCT 59.928 57.895 15.69 11.45 0.00 4.09
4774 5413 2.062177 GCTCTAACCCCACCGCCTA 61.062 63.158 0.00 0.00 0.00 3.93
4799 5438 1.197036 CTCTCGACGTTGCACTAGTCA 59.803 52.381 13.56 0.00 34.80 3.41
4808 5447 2.236395 GTTGCACTAGTCACCCCACTAT 59.764 50.000 0.00 0.00 0.00 2.12
4813 5452 2.174210 ACTAGTCACCCCACTATCGCTA 59.826 50.000 0.00 0.00 0.00 4.26
4831 5470 2.856039 TAGTAGCTCCTGCACCGGCT 62.856 60.000 0.00 7.53 42.74 5.52
4875 5514 4.199310 CAGAAGAAGAAACCCAACAGTCA 58.801 43.478 0.00 0.00 0.00 3.41
4910 5554 3.149196 GTTCAGGGAGATGTTGCAAGAA 58.851 45.455 0.00 0.00 0.00 2.52
5011 5655 1.951209 TAGAGGCTTCCATGTCACCA 58.049 50.000 0.00 0.00 0.00 4.17
5169 6191 4.710167 TGTCCTGCTGCAGCGCAT 62.710 61.111 32.11 0.00 45.83 4.73
5405 6431 2.028748 ACACATGTTACTACCGGGTGAC 60.029 50.000 10.66 2.25 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 2.030027 TGAGGAAGGTCAGGACACAT 57.970 50.000 1.41 0.00 0.00 3.21
38 41 1.416401 TGTTGAGGAAGGTCAGGACAC 59.584 52.381 1.41 0.00 0.00 3.67
76 79 2.660802 GTCGGGGGTGACGAACAT 59.339 61.111 0.00 0.00 42.55 2.71
199 204 6.905076 ACACAAATAATAGCTTATTTCGTGCG 59.095 34.615 19.77 7.72 42.79 5.34
271 276 2.812011 GTGTGGTGATGGTGAGGTTTAC 59.188 50.000 0.00 0.00 0.00 2.01
324 348 0.958382 GTGTGTGTGTGTGTGGTGGT 60.958 55.000 0.00 0.00 0.00 4.16
325 349 1.800032 GTGTGTGTGTGTGTGGTGG 59.200 57.895 0.00 0.00 0.00 4.61
328 352 1.713937 ATGCGTGTGTGTGTGTGTGG 61.714 55.000 0.00 0.00 0.00 4.17
329 353 0.933796 TATGCGTGTGTGTGTGTGTG 59.066 50.000 0.00 0.00 0.00 3.82
331 355 0.933796 TGTATGCGTGTGTGTGTGTG 59.066 50.000 0.00 0.00 0.00 3.82
333 357 1.725611 GCATGTATGCGTGTGTGTGTG 60.726 52.381 4.86 0.00 44.67 3.82
334 358 0.516877 GCATGTATGCGTGTGTGTGT 59.483 50.000 4.86 0.00 44.67 3.72
335 359 3.294908 GCATGTATGCGTGTGTGTG 57.705 52.632 4.86 0.00 44.67 3.82
477 713 0.317479 AGAGAAGTTTGACCCGGACG 59.683 55.000 0.73 0.00 0.00 4.79
520 956 2.874086 CCGCATCACATTCTGCTCATTA 59.126 45.455 0.00 0.00 36.23 1.90
523 961 0.036105 ACCGCATCACATTCTGCTCA 60.036 50.000 0.00 0.00 36.23 4.26
537 975 3.680490 TGTCTTGGATGATTAAACCGCA 58.320 40.909 0.00 0.00 0.00 5.69
581 1023 1.697432 CCTGTTGTAGGTGACCTTCCA 59.303 52.381 10.53 4.30 42.00 3.53
594 1036 0.842467 CCCTCCCTCCTTCCTGTTGT 60.842 60.000 0.00 0.00 0.00 3.32
597 1040 2.456840 CCCCTCCCTCCTTCCTGT 59.543 66.667 0.00 0.00 0.00 4.00
630 1096 1.358152 CCCACTTCTGGAACCACCTA 58.642 55.000 0.00 0.00 40.55 3.08
693 1159 2.351548 CAATCGCCGCAGCATTCG 60.352 61.111 0.00 0.00 39.83 3.34
762 1231 1.893808 CCTTGTGCACTCCGCTGTT 60.894 57.895 19.41 0.00 43.06 3.16
763 1232 2.281070 CCTTGTGCACTCCGCTGT 60.281 61.111 19.41 0.00 43.06 4.40
834 1303 3.953542 TCCAGTAGAGATCACCAGCTA 57.046 47.619 0.00 0.00 0.00 3.32
835 1304 2.836636 TCCAGTAGAGATCACCAGCT 57.163 50.000 0.00 0.00 0.00 4.24
913 1383 2.308722 GCCTGGAACCAGATGGGGA 61.309 63.158 20.79 0.00 46.30 4.81
916 1386 3.089838 TGGCCTGGAACCAGATGG 58.910 61.111 20.79 7.71 46.30 3.51
984 1454 2.570752 AGCCATCATGGATAGTAGCCAG 59.429 50.000 13.50 5.54 40.96 4.85
990 1460 2.093288 CGCCATAGCCATCATGGATAGT 60.093 50.000 8.30 0.00 42.24 2.12
1034 1504 0.838122 CCTCACACCCCCTGTCTCTT 60.838 60.000 0.00 0.00 0.00 2.85
1038 1508 2.203938 TCCCTCACACCCCCTGTC 60.204 66.667 0.00 0.00 0.00 3.51
1043 1513 0.840722 TTCCTTCTCCCTCACACCCC 60.841 60.000 0.00 0.00 0.00 4.95
1168 1641 2.181777 CTGCCTCTACTTCGCGCA 59.818 61.111 8.75 0.00 0.00 6.09
1172 1645 1.226717 GTCGCCTGCCTCTACTTCG 60.227 63.158 0.00 0.00 0.00 3.79
1174 1647 0.176680 CATGTCGCCTGCCTCTACTT 59.823 55.000 0.00 0.00 0.00 2.24
1177 1650 1.816537 GTCATGTCGCCTGCCTCTA 59.183 57.895 0.00 0.00 0.00 2.43
1189 1662 2.593468 CTTGGATCCGGCCGTCATGT 62.593 60.000 26.12 4.39 0.00 3.21
1191 1664 2.063979 TCTTGGATCCGGCCGTCAT 61.064 57.895 26.12 15.85 0.00 3.06
1192 1665 2.682136 TCTTGGATCCGGCCGTCA 60.682 61.111 26.12 10.90 0.00 4.35
1194 1667 3.782443 GGTCTTGGATCCGGCCGT 61.782 66.667 26.12 6.07 0.00 5.68
1362 1845 5.176592 GCCTTTGGTTAGTAGGTTAGTCTG 58.823 45.833 0.00 0.00 0.00 3.51
1363 1846 4.224594 GGCCTTTGGTTAGTAGGTTAGTCT 59.775 45.833 0.00 0.00 0.00 3.24
1501 1986 0.687354 TGGCCACTCCAAGTCTCTTC 59.313 55.000 0.00 0.00 43.21 2.87
1503 1988 4.648007 TGGCCACTCCAAGTCTCT 57.352 55.556 0.00 0.00 43.21 3.10
1529 2014 0.035458 CCTCGTGTCCTCCTTGCTTT 59.965 55.000 0.00 0.00 0.00 3.51
1599 2087 1.553704 AGGCGAAAGAAATAGGTCGGT 59.446 47.619 0.00 0.00 34.13 4.69
1630 2118 4.472108 ACCCTCGATGTTTTCAGGGTATAA 59.528 41.667 6.72 0.00 46.03 0.98
1648 2136 1.202891 AGTGGTTTTGTGGCTACCCTC 60.203 52.381 0.00 0.00 0.00 4.30
1652 2140 3.131400 TGGAAAAGTGGTTTTGTGGCTAC 59.869 43.478 0.00 0.00 35.94 3.58
1653 2141 3.131400 GTGGAAAAGTGGTTTTGTGGCTA 59.869 43.478 0.00 0.00 35.94 3.93
1654 2142 2.093711 GTGGAAAAGTGGTTTTGTGGCT 60.094 45.455 0.00 0.00 35.94 4.75
1655 2143 2.276201 GTGGAAAAGTGGTTTTGTGGC 58.724 47.619 0.00 0.00 35.94 5.01
1666 2154 2.517402 TTGCGGCGGTGGAAAAGT 60.517 55.556 9.78 0.00 0.00 2.66
1667 2155 2.050442 GTTGCGGCGGTGGAAAAG 60.050 61.111 9.78 0.00 0.00 2.27
1668 2156 3.597728 GGTTGCGGCGGTGGAAAA 61.598 61.111 9.78 0.00 0.00 2.29
1710 2198 0.963856 AATCGCCGAAAAAGGTCCCC 60.964 55.000 0.00 0.00 0.00 4.81
1714 2202 3.489813 GCAAATCGCCGAAAAAGGT 57.510 47.368 0.00 0.00 32.94 3.50
1727 2215 1.230212 GAATCCCCCTCCGGCAAAT 59.770 57.895 0.00 0.00 0.00 2.32
1729 2217 3.792736 CGAATCCCCCTCCGGCAA 61.793 66.667 0.00 0.00 0.00 4.52
1730 2218 4.789173 TCGAATCCCCCTCCGGCA 62.789 66.667 0.00 0.00 0.00 5.69
1743 2231 0.970937 AGAAGCCCTCCGTGATCGAA 60.971 55.000 0.00 0.00 39.71 3.71
1778 2266 4.944317 ACTACTCACACATCATCGAAGAGA 59.056 41.667 0.00 0.00 43.63 3.10
1783 2271 5.184287 TGGTAAACTACTCACACATCATCGA 59.816 40.000 0.00 0.00 0.00 3.59
1858 2347 6.152831 TCGAGGAGAACTTTGTATTGAGATCA 59.847 38.462 0.00 0.00 0.00 2.92
2072 2563 4.082026 AGCACTTATCCCATTTGCAAGAAC 60.082 41.667 0.00 0.00 35.57 3.01
2082 2574 4.210331 CCAAAGCTAAGCACTTATCCCAT 58.790 43.478 0.00 0.00 0.00 4.00
2088 2580 6.003950 AGATTGAACCAAAGCTAAGCACTTA 58.996 36.000 0.00 0.00 0.00 2.24
2142 2635 9.248291 GAAACAATATAATACATGCCTTGTTGG 57.752 33.333 0.00 0.00 39.87 3.77
2184 2677 9.685276 CTCAAGCAATATGATATAAACCCCATA 57.315 33.333 0.00 0.00 0.00 2.74
2267 2760 7.716768 CTATCCAGCATGCATCTAGATATTG 57.283 40.000 21.98 4.82 31.97 1.90
2330 2824 1.625616 CGCGACAAGTAGACCGAAAT 58.374 50.000 0.00 0.00 0.00 2.17
2395 2889 5.618798 CGAGCAATTGATAGAAAAGCGAATC 59.381 40.000 10.34 0.00 0.00 2.52
2398 2892 4.032900 GTCGAGCAATTGATAGAAAAGCGA 59.967 41.667 10.34 3.34 0.00 4.93
2447 2946 4.163839 AGTGGCTTCTCTCAAGATAGCAAT 59.836 41.667 13.17 1.54 37.38 3.56
2448 2947 3.517100 AGTGGCTTCTCTCAAGATAGCAA 59.483 43.478 13.17 3.17 37.38 3.91
2615 3120 4.336889 TCCCTTCACAGTCACTTACAAG 57.663 45.455 0.00 0.00 0.00 3.16
2619 3124 4.346709 TGTCAATCCCTTCACAGTCACTTA 59.653 41.667 0.00 0.00 0.00 2.24
2625 3130 2.508526 GCTTGTCAATCCCTTCACAGT 58.491 47.619 0.00 0.00 0.00 3.55
2644 3149 1.613270 CAACCAACGCGATAAAAGGC 58.387 50.000 15.93 0.00 0.00 4.35
2665 3170 5.124936 ACCTACACAAACAAACAAGAACCTC 59.875 40.000 0.00 0.00 0.00 3.85
2674 3179 6.201615 GTCACCTAGTACCTACACAAACAAAC 59.798 42.308 0.00 0.00 0.00 2.93
2692 3197 2.561419 GAGGTAGCACACAAGTCACCTA 59.439 50.000 0.00 0.00 36.54 3.08
2707 3212 7.039644 CCAAGGTATCAATACAGTAGGAGGTAG 60.040 44.444 2.80 0.00 34.98 3.18
2708 3213 6.781014 CCAAGGTATCAATACAGTAGGAGGTA 59.219 42.308 2.80 0.00 34.98 3.08
2738 3243 9.143631 GTAGCGTAAGTATTTCCTTCAGTTTTA 57.856 33.333 0.00 0.00 41.68 1.52
2747 3253 4.159879 AGCACAGTAGCGTAAGTATTTCCT 59.840 41.667 0.00 0.00 40.15 3.36
2773 3279 3.326836 CCTTGAAGAGGGAAGAGTGAC 57.673 52.381 0.00 0.00 42.26 3.67
2807 3313 0.528470 GACGTGCTACCTCTTGAGCT 59.472 55.000 0.00 0.00 39.54 4.09
2824 3331 1.424493 CGCCTCAAGATTCGGCAGAC 61.424 60.000 0.00 0.00 43.95 3.51
2825 3332 1.153568 CGCCTCAAGATTCGGCAGA 60.154 57.895 0.00 0.00 43.95 4.26
2826 3333 2.176273 CCGCCTCAAGATTCGGCAG 61.176 63.158 0.00 0.00 43.95 4.85
2827 3334 2.125147 CCGCCTCAAGATTCGGCA 60.125 61.111 0.00 0.00 43.95 5.69
2935 3503 3.342627 CGCGCACCCGAGAAAACA 61.343 61.111 8.75 0.00 36.29 2.83
2949 3517 1.059369 CGAGATTCCAGCAAACGCG 59.941 57.895 3.53 3.53 0.00 6.01
2956 3524 2.096496 CACATGTTTCCGAGATTCCAGC 59.904 50.000 0.00 0.00 0.00 4.85
2969 3537 6.773638 CCTATAAGGGCTCTATCACATGTTT 58.226 40.000 0.00 0.00 0.00 2.83
3045 3613 2.093625 GTGTGTGTGTGTGTGTGTGTAG 59.906 50.000 0.00 0.00 0.00 2.74
3046 3614 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
3047 3615 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3048 3616 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3049 3617 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3050 3618 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3051 3619 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3052 3620 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3053 3621 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3054 3622 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3055 3623 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3056 3624 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3057 3625 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3058 3626 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3059 3627 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3060 3628 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3061 3629 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3062 3630 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3063 3631 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3064 3632 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
3090 3658 9.492730 TCTGCACCCTAGATGATGAATATTATA 57.507 33.333 0.00 0.00 0.00 0.98
3091 3659 8.384693 TCTGCACCCTAGATGATGAATATTAT 57.615 34.615 0.00 0.00 0.00 1.28
3092 3660 7.797121 TCTGCACCCTAGATGATGAATATTA 57.203 36.000 0.00 0.00 0.00 0.98
3093 3661 6.692849 TCTGCACCCTAGATGATGAATATT 57.307 37.500 0.00 0.00 0.00 1.28
3094 3662 6.692849 TTCTGCACCCTAGATGATGAATAT 57.307 37.500 0.00 0.00 0.00 1.28
3095 3663 6.692849 ATTCTGCACCCTAGATGATGAATA 57.307 37.500 0.00 0.00 0.00 1.75
3096 3664 5.579753 ATTCTGCACCCTAGATGATGAAT 57.420 39.130 0.00 1.12 0.00 2.57
3097 3665 6.100279 ACTTATTCTGCACCCTAGATGATGAA 59.900 38.462 0.00 0.00 0.00 2.57
3098 3666 5.604231 ACTTATTCTGCACCCTAGATGATGA 59.396 40.000 0.00 0.00 0.00 2.92
3099 3667 5.862845 ACTTATTCTGCACCCTAGATGATG 58.137 41.667 0.00 0.00 0.00 3.07
3100 3668 6.506538 AACTTATTCTGCACCCTAGATGAT 57.493 37.500 0.00 0.00 0.00 2.45
3101 3669 5.957771 AACTTATTCTGCACCCTAGATGA 57.042 39.130 0.00 0.00 0.00 2.92
3102 3670 8.316640 GAATAACTTATTCTGCACCCTAGATG 57.683 38.462 12.55 0.00 41.00 2.90
3113 3681 7.848201 ACCTCGGGTGAAGAATAACTTATTCTG 60.848 40.741 20.22 10.00 43.39 3.02
3114 3682 6.156429 ACCTCGGGTGAAGAATAACTTATTCT 59.844 38.462 15.62 15.62 44.74 2.40
3115 3683 6.346896 ACCTCGGGTGAAGAATAACTTATTC 58.653 40.000 12.07 12.07 38.76 1.75
3116 3684 6.309389 ACCTCGGGTGAAGAATAACTTATT 57.691 37.500 0.00 0.00 39.13 1.40
3117 3685 5.952347 ACCTCGGGTGAAGAATAACTTAT 57.048 39.130 0.00 0.00 39.13 1.73
3118 3686 6.855763 TTACCTCGGGTGAAGAATAACTTA 57.144 37.500 5.90 0.00 36.67 2.24
3119 3687 5.750352 TTACCTCGGGTGAAGAATAACTT 57.250 39.130 5.90 0.00 38.14 2.66
3120 3688 5.952347 ATTACCTCGGGTGAAGAATAACT 57.048 39.130 5.90 0.00 36.19 2.24
3121 3689 6.997239 AAATTACCTCGGGTGAAGAATAAC 57.003 37.500 5.90 0.00 36.19 1.89
3122 3690 9.116067 CATAAAATTACCTCGGGTGAAGAATAA 57.884 33.333 5.90 0.00 36.19 1.40
3123 3691 8.487848 TCATAAAATTACCTCGGGTGAAGAATA 58.512 33.333 5.90 0.00 36.19 1.75
3124 3692 7.343357 TCATAAAATTACCTCGGGTGAAGAAT 58.657 34.615 5.90 0.00 36.19 2.40
3125 3693 6.713276 TCATAAAATTACCTCGGGTGAAGAA 58.287 36.000 5.90 0.00 36.19 2.52
3126 3694 6.302535 TCATAAAATTACCTCGGGTGAAGA 57.697 37.500 5.90 0.00 36.19 2.87
3127 3695 7.568199 AATCATAAAATTACCTCGGGTGAAG 57.432 36.000 5.90 0.00 36.19 3.02
3128 3696 8.269317 AGTAATCATAAAATTACCTCGGGTGAA 58.731 33.333 5.90 0.00 41.17 3.18
3129 3697 7.798071 AGTAATCATAAAATTACCTCGGGTGA 58.202 34.615 5.90 0.00 41.17 4.02
3130 3698 8.446599 AAGTAATCATAAAATTACCTCGGGTG 57.553 34.615 5.90 0.00 41.17 4.61
3131 3699 8.269317 TGAAGTAATCATAAAATTACCTCGGGT 58.731 33.333 1.14 1.14 41.17 5.28
3132 3700 8.671384 TGAAGTAATCATAAAATTACCTCGGG 57.329 34.615 3.76 0.00 41.17 5.14
3169 3737 9.921637 GGAATGTAAATACTTGAATTCCAAACA 57.078 29.630 2.27 0.00 41.68 2.83
3197 3765 9.915629 TTGGCAATTTTTACGTAGTGAAATAAT 57.084 25.926 0.00 0.00 45.14 1.28
3198 3766 9.745880 TTTGGCAATTTTTACGTAGTGAAATAA 57.254 25.926 0.00 3.70 45.14 1.40
3199 3767 9.745880 TTTTGGCAATTTTTACGTAGTGAAATA 57.254 25.926 0.00 0.00 45.14 1.40
3200 3768 8.649973 TTTTGGCAATTTTTACGTAGTGAAAT 57.350 26.923 0.00 2.05 45.14 2.17
3201 3769 8.649973 ATTTTGGCAATTTTTACGTAGTGAAA 57.350 26.923 0.00 0.00 44.16 2.69
3202 3770 9.745880 TTATTTTGGCAATTTTTACGTAGTGAA 57.254 25.926 0.00 0.00 45.73 3.18
3203 3771 9.745880 TTTATTTTGGCAATTTTTACGTAGTGA 57.254 25.926 0.00 0.00 45.73 3.41
3240 3808 9.574516 ACTGTAAATTTTCTTGTCTTATGACCT 57.425 29.630 6.32 0.00 42.28 3.85
3327 3895 9.472361 ACTGTAGCAAAATATATAATCGTCGTT 57.528 29.630 0.00 0.00 0.00 3.85
3346 3914 5.458891 TCTGACGTAAAAAGAGACTGTAGC 58.541 41.667 0.00 0.00 0.00 3.58
3347 3915 7.925703 TTTCTGACGTAAAAAGAGACTGTAG 57.074 36.000 0.00 0.00 0.00 2.74
3351 3919 9.194271 GTCTTATTTCTGACGTAAAAAGAGACT 57.806 33.333 17.73 0.00 32.90 3.24
3391 3960 5.122554 ACGATCAATGCACCGTAATTTTACA 59.877 36.000 0.00 0.00 33.13 2.41
3413 3982 3.952323 TCTTCACCCTCCTCTATGTTACG 59.048 47.826 0.00 0.00 0.00 3.18
3418 3987 6.739331 AGTTATTCTTCACCCTCCTCTATG 57.261 41.667 0.00 0.00 0.00 2.23
3496 4081 7.679783 CACCCTGGATGATGAATAGTAATACA 58.320 38.462 0.00 0.00 0.00 2.29
3499 4084 5.073554 TGCACCCTGGATGATGAATAGTAAT 59.926 40.000 0.00 0.00 0.00 1.89
3533 4118 5.686397 CGTAAGATTACCTCGGATGAAGAAC 59.314 44.000 0.00 0.00 43.02 3.01
3755 4340 3.056304 CGACGTAAAAAGGGACCGTAAA 58.944 45.455 0.00 0.00 0.00 2.01
3771 4356 7.059212 CGTAAGTTTTGTCTTATTTTCGACGT 58.941 34.615 0.00 0.00 33.39 4.34
3777 4362 7.696755 ACGTTCCGTAAGTTTTGTCTTATTTT 58.303 30.769 0.00 0.00 38.73 1.82
3812 4397 7.147302 ACCCCTTCTATTTTACTATCAGTGCAT 60.147 37.037 0.00 0.00 0.00 3.96
3817 4402 9.681062 TTTTCACCCCTTCTATTTTACTATCAG 57.319 33.333 0.00 0.00 0.00 2.90
3833 4418 9.147732 GATGAGGAATATTTATTTTTCACCCCT 57.852 33.333 0.00 0.00 0.00 4.79
3842 4428 9.136323 GTCACCTTGGATGAGGAATATTTATTT 57.864 33.333 0.00 0.00 39.25 1.40
3848 4434 3.967326 TCGTCACCTTGGATGAGGAATAT 59.033 43.478 0.00 0.00 37.87 1.28
3858 4444 0.459585 GCGCTATTCGTCACCTTGGA 60.460 55.000 0.00 0.00 41.07 3.53
3862 4448 0.739813 GGTTGCGCTATTCGTCACCT 60.740 55.000 9.73 0.00 38.54 4.00
3899 4485 7.113437 TCCACATAACTTCCGGATCAAAATAA 58.887 34.615 4.15 0.00 0.00 1.40
3904 4490 4.771114 ATCCACATAACTTCCGGATCAA 57.229 40.909 4.15 0.00 30.51 2.57
3911 4497 1.940613 GCCGTGATCCACATAACTTCC 59.059 52.381 0.00 0.00 33.40 3.46
3913 4499 1.651987 CGCCGTGATCCACATAACTT 58.348 50.000 0.00 0.00 33.40 2.66
3957 4552 1.066430 CAGATTCGGGAGTTCGGGAAA 60.066 52.381 0.00 0.00 0.00 3.13
3989 4584 1.173913 CGTGGGAGTGGGATTTTTCC 58.826 55.000 0.00 0.00 0.00 3.13
4041 4637 1.823976 GGTGGGATCGAGGAAGGAC 59.176 63.158 0.00 0.00 0.00 3.85
4232 4865 2.670148 GGTGGTCGGGAGGCTTGAT 61.670 63.158 0.00 0.00 32.81 2.57
4314 4949 1.274728 GATGACCCTGATCCAGATCCG 59.725 57.143 5.22 0.00 37.02 4.18
4530 5169 4.664677 GCAGGTCGCCGAGTGTGT 62.665 66.667 0.00 0.00 32.94 3.72
4577 5216 3.144506 GCATGAAGGTCACATCATAGGG 58.855 50.000 0.00 0.00 34.61 3.53
4632 5271 1.274703 ACAAGGGATCCACTGCCGAT 61.275 55.000 15.23 0.00 41.10 4.18
4652 5291 0.178975 ATCTAGAGCTCGGTGAGGGG 60.179 60.000 8.37 0.00 0.00 4.79
4742 5381 0.321671 TAGAGCTCTTGGGTGCACAC 59.678 55.000 23.84 17.25 34.76 3.82
4760 5399 1.339644 GGTCATAGGCGGTGGGGTTA 61.340 60.000 0.00 0.00 0.00 2.85
4774 5413 0.388649 GTGCAACGTCGAGAGGTCAT 60.389 55.000 0.00 0.00 0.00 3.06
4799 5438 1.618487 GCTACTAGCGATAGTGGGGT 58.382 55.000 23.02 0.00 39.35 4.95
4813 5452 3.775654 GCCGGTGCAGGAGCTACT 61.776 66.667 1.90 0.00 42.74 2.57
4875 5514 9.018582 CATCTCCCTGAACTAAAATCTCTTTTT 57.981 33.333 0.00 0.00 40.59 1.94
4910 5554 4.160252 ACACCTGAACTGAAAATTGCACTT 59.840 37.500 0.00 0.00 0.00 3.16
5011 5655 3.930012 GCGGGAGGCCGAAGCTAT 61.930 66.667 0.00 0.00 39.73 2.97
5220 6242 1.616628 GGGGAGAGGTGTCATGGGT 60.617 63.158 0.00 0.00 0.00 4.51
5224 6246 1.673767 AACATGGGGAGAGGTGTCAT 58.326 50.000 0.00 0.00 0.00 3.06
5315 6341 5.677852 GCACTTTGACCCTTTTACGTTCTTT 60.678 40.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.