Multiple sequence alignment - TraesCS2A01G270800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G270800 chr2A 100.000 6054 0 0 1 6054 440930671 440924618 0.000000e+00 11180.0
1 TraesCS2A01G270800 chr2A 90.419 167 7 1 5285 5442 165235843 165236009 1.710000e-50 211.0
2 TraesCS2A01G270800 chr2D 94.885 4790 100 31 597 5284 332519050 332514304 0.000000e+00 7354.0
3 TraesCS2A01G270800 chr2D 92.559 551 19 14 1 542 332519929 332519392 0.000000e+00 771.0
4 TraesCS2A01G270800 chr2D 87.565 386 44 3 5471 5852 332514307 332513922 1.550000e-120 444.0
5 TraesCS2A01G270800 chr2D 92.562 121 7 2 5932 6052 434417732 434417614 8.070000e-39 172.0
6 TraesCS2A01G270800 chr2B 94.596 2961 82 27 2382 5274 400625424 400622474 0.000000e+00 4510.0
7 TraesCS2A01G270800 chr2B 97.149 1789 26 7 620 2391 400627355 400625575 0.000000e+00 2998.0
8 TraesCS2A01G270800 chr2B 95.575 1401 56 1 3865 5265 400603850 400605244 0.000000e+00 2239.0
9 TraesCS2A01G270800 chr2B 92.053 604 26 8 1 597 400628208 400627620 0.000000e+00 830.0
10 TraesCS2A01G270800 chr2B 87.000 200 23 2 5658 5855 400622103 400621905 7.900000e-54 222.0
11 TraesCS2A01G270800 chr2B 92.562 121 7 2 5932 6052 486327066 486326948 8.070000e-39 172.0
12 TraesCS2A01G270800 chr2B 94.444 36 2 0 5530 5565 45132587 45132552 8.480000e-04 56.5
13 TraesCS2A01G270800 chr4B 91.943 211 17 0 3232 3442 567379828 567379618 4.590000e-76 296.0
14 TraesCS2A01G270800 chr4B 83.401 247 15 7 2860 3104 567380181 567379959 7.950000e-49 206.0
15 TraesCS2A01G270800 chr5A 95.580 181 7 1 5284 5463 479622239 479622419 7.680000e-74 289.0
16 TraesCS2A01G270800 chr5A 94.828 116 5 1 5937 6052 111143676 111143790 4.820000e-41 180.0
17 TraesCS2A01G270800 chr5A 86.441 59 7 1 5508 5566 485590379 485590436 5.070000e-06 63.9
18 TraesCS2A01G270800 chr7A 91.960 199 6 3 5285 5473 632041394 632041196 2.780000e-68 270.0
19 TraesCS2A01G270800 chr7A 93.103 116 6 2 5937 6052 334132632 334132519 1.040000e-37 169.0
20 TraesCS2A01G270800 chr4D 89.100 211 19 3 3232 3442 454658913 454658707 6.020000e-65 259.0
21 TraesCS2A01G270800 chr4D 84.211 247 13 7 2860 3104 454659266 454659044 3.670000e-52 217.0
22 TraesCS2A01G270800 chr1A 93.333 120 6 2 5933 6052 2945973 2945856 6.240000e-40 176.0
23 TraesCS2A01G270800 chr1A 91.803 122 8 2 5933 6054 30198178 30198297 1.040000e-37 169.0
24 TraesCS2A01G270800 chr1A 80.503 159 23 7 5285 5440 551948720 551948873 1.380000e-21 115.0
25 TraesCS2A01G270800 chr6A 91.736 121 8 2 5932 6052 256291066 256291184 3.750000e-37 167.0
26 TraesCS2A01G270800 chr6A 89.831 59 4 2 5507 5564 46613909 46613852 2.340000e-09 75.0
27 TraesCS2A01G270800 chr3D 91.736 121 8 2 5932 6052 405667995 405668113 3.750000e-37 167.0
28 TraesCS2A01G270800 chr1B 91.736 121 8 2 5932 6052 343395273 343395155 3.750000e-37 167.0
29 TraesCS2A01G270800 chr5B 81.609 87 15 1 5489 5575 439263201 439263286 3.030000e-08 71.3
30 TraesCS2A01G270800 chr5B 92.500 40 3 0 5520 5559 687334584 687334545 2.360000e-04 58.4
31 TraesCS2A01G270800 chrUn 88.136 59 5 2 5507 5564 27577696 27577639 1.090000e-07 69.4
32 TraesCS2A01G270800 chr3B 90.000 50 2 3 5393 5440 807074410 807074362 1.820000e-05 62.1
33 TraesCS2A01G270800 chr6D 90.698 43 2 2 5532 5573 102992694 102992653 8.480000e-04 56.5
34 TraesCS2A01G270800 chr6D 94.595 37 1 1 5529 5565 391562154 391562119 8.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G270800 chr2A 440924618 440930671 6053 True 11180.000000 11180 100.000000 1 6054 1 chr2A.!!$R1 6053
1 TraesCS2A01G270800 chr2D 332513922 332519929 6007 True 2856.333333 7354 91.669667 1 5852 3 chr2D.!!$R2 5851
2 TraesCS2A01G270800 chr2B 400603850 400605244 1394 False 2239.000000 2239 95.575000 3865 5265 1 chr2B.!!$F1 1400
3 TraesCS2A01G270800 chr2B 400621905 400628208 6303 True 2140.000000 4510 92.699500 1 5855 4 chr2B.!!$R3 5854
4 TraesCS2A01G270800 chr4B 567379618 567380181 563 True 251.000000 296 87.672000 2860 3442 2 chr4B.!!$R1 582
5 TraesCS2A01G270800 chr4D 454658707 454659266 559 True 238.000000 259 86.655500 2860 3442 2 chr4D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 1470 0.038892 AATCAGCAGCAACGCCAAAG 60.039 50.0 0.0 0.0 0.00 2.77 F
2576 3355 0.384669 GCACCACTAGCCCGTAGTAG 59.615 60.0 0.0 0.0 40.27 2.57 F
3374 4263 0.037882 CGAGCAGGAAGACAAGCTGA 60.038 55.0 0.0 0.0 37.48 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2699 3480 1.409064 CAGCATGCATGATCAAGCCTT 59.591 47.619 30.64 5.16 31.66 4.35 R
4561 5477 0.111253 CCCTCTTGCACTCCCTTGTT 59.889 55.000 0.00 0.00 0.00 2.83 R
5329 6245 0.250640 AAACAGGACAGCTCAGCAGG 60.251 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 32 0.444260 GCTTTGCGCTTGAGACTACC 59.556 55.000 9.73 0.00 35.14 3.18
106 116 7.643764 GCTTTTGTAATTTGCTTTCCTTTTTCC 59.356 33.333 0.00 0.00 0.00 3.13
152 162 6.377327 GTCAACAATATACCTTGACCATGG 57.623 41.667 11.19 11.19 38.47 3.66
153 163 6.119536 GTCAACAATATACCTTGACCATGGA 58.880 40.000 21.47 0.00 38.47 3.41
154 164 6.601613 GTCAACAATATACCTTGACCATGGAA 59.398 38.462 21.47 2.77 38.47 3.53
155 165 6.601613 TCAACAATATACCTTGACCATGGAAC 59.398 38.462 21.47 12.58 0.00 3.62
162 172 1.459592 CTTGACCATGGAACGAACGAC 59.540 52.381 21.47 0.00 0.00 4.34
174 184 3.220507 ACGAACGACGATTAATCACCA 57.779 42.857 15.57 0.00 45.77 4.17
175 185 3.577667 ACGAACGACGATTAATCACCAA 58.422 40.909 15.57 0.00 45.77 3.67
176 186 3.365820 ACGAACGACGATTAATCACCAAC 59.634 43.478 15.57 1.84 45.77 3.77
177 187 3.538828 CGAACGACGATTAATCACCAACG 60.539 47.826 15.57 13.39 45.77 4.10
178 188 2.950433 ACGACGATTAATCACCAACGT 58.050 42.857 15.57 13.92 36.71 3.99
179 189 4.095410 ACGACGATTAATCACCAACGTA 57.905 40.909 15.57 0.00 34.26 3.57
199 213 9.721933 CAACGTAACGTATATACAGCAAATATG 57.278 33.333 13.22 4.65 39.99 1.78
308 322 3.072476 CCTAGGGATCGCCATGGG 58.928 66.667 15.13 3.69 40.32 4.00
338 352 1.064906 AGTAGGAGCACGTAGGCAGTA 60.065 52.381 0.36 0.00 35.83 2.74
339 353 1.334243 GTAGGAGCACGTAGGCAGTAG 59.666 57.143 0.36 0.00 35.83 2.57
340 354 0.323542 AGGAGCACGTAGGCAGTAGT 60.324 55.000 0.36 0.00 35.83 2.73
344 358 3.201290 GAGCACGTAGGCAGTAGTAGTA 58.799 50.000 0.36 0.00 35.83 1.82
355 369 6.297582 AGGCAGTAGTAGTAGTAGTACCATG 58.702 44.000 15.97 11.27 36.16 3.66
572 591 2.507992 CCACGCCGCTGAGAGAAG 60.508 66.667 0.00 0.00 0.00 2.85
573 592 2.568612 CACGCCGCTGAGAGAAGA 59.431 61.111 0.00 0.00 0.00 2.87
574 593 1.515952 CACGCCGCTGAGAGAAGAG 60.516 63.158 0.00 0.00 0.00 2.85
575 594 1.675972 ACGCCGCTGAGAGAAGAGA 60.676 57.895 0.00 0.00 0.00 3.10
576 595 1.063972 CGCCGCTGAGAGAAGAGAG 59.936 63.158 0.00 0.00 0.00 3.20
577 596 1.372838 CGCCGCTGAGAGAAGAGAGA 61.373 60.000 0.00 0.00 0.00 3.10
585 604 4.383552 GCTGAGAGAAGAGAGAGAGAGAGT 60.384 50.000 0.00 0.00 0.00 3.24
594 613 3.146066 AGAGAGAGAGAGTGTGTGTGTC 58.854 50.000 0.00 0.00 0.00 3.67
713 1267 1.381056 TCTCCTCTCAGCTCAGGCC 60.381 63.158 0.00 0.00 39.73 5.19
876 1462 2.640184 CCTCATCAGAATCAGCAGCAA 58.360 47.619 0.00 0.00 0.00 3.91
883 1469 0.039256 GAATCAGCAGCAACGCCAAA 60.039 50.000 0.00 0.00 0.00 3.28
884 1470 0.038892 AATCAGCAGCAACGCCAAAG 60.039 50.000 0.00 0.00 0.00 2.77
885 1471 1.870055 ATCAGCAGCAACGCCAAAGG 61.870 55.000 0.00 0.00 0.00 3.11
1272 1862 1.925847 CTCGAGCTCTGCTTCAATGTC 59.074 52.381 12.85 0.00 39.88 3.06
1356 1946 4.742649 TCCTCGCTCGTCCAGCCT 62.743 66.667 0.00 0.00 46.74 4.58
2576 3355 0.384669 GCACCACTAGCCCGTAGTAG 59.615 60.000 0.00 0.00 40.27 2.57
2591 3370 4.322567 CGTAGTAGTATCTGTACCCTCCC 58.677 52.174 0.00 0.00 0.00 4.30
2597 3376 5.846528 AGTATCTGTACCCTCCCTACTAG 57.153 47.826 0.00 0.00 0.00 2.57
2618 3397 7.558604 ACTAGTAGACCTCAAGTAGAGTAGTG 58.441 42.308 3.59 0.00 43.12 2.74
2669 3449 2.574006 ATGAGGTGCTTGAGCTTTCA 57.426 45.000 4.44 5.96 42.66 2.69
2746 3527 5.523188 GGCAGTAGAAATTGATGAGAGACAG 59.477 44.000 0.00 0.00 0.00 3.51
3073 3862 7.797062 TGGTTTGATATGGCTACAGTTATGTA 58.203 34.615 0.00 0.00 41.01 2.29
3074 3863 8.436778 TGGTTTGATATGGCTACAGTTATGTAT 58.563 33.333 0.00 0.00 41.05 2.29
3075 3864 8.721478 GGTTTGATATGGCTACAGTTATGTATG 58.279 37.037 0.00 0.00 41.05 2.39
3076 3865 9.273016 GTTTGATATGGCTACAGTTATGTATGT 57.727 33.333 0.00 0.00 41.05 2.29
3191 4050 6.195798 GCTCCTTTTGTACGTGTAAAAACTTG 59.804 38.462 0.00 0.00 0.00 3.16
3214 4073 9.815936 CTTGAAATAAATTGATGGAAACTTTGC 57.184 29.630 0.00 0.00 0.00 3.68
3223 4082 1.962807 TGGAAACTTTGCCATGGTCTG 59.037 47.619 14.67 4.20 0.00 3.51
3261 4147 2.162681 GTTTGTCCCCTGATGTTCCAG 58.837 52.381 0.00 0.00 0.00 3.86
3374 4263 0.037882 CGAGCAGGAAGACAAGCTGA 60.038 55.000 0.00 0.00 37.48 4.26
3421 4310 3.069318 GAGAGGGAGGCGTCCGTT 61.069 66.667 20.59 11.04 45.05 4.44
3751 4667 0.600057 CTTCTTGCTTTGGTCCTGGC 59.400 55.000 0.00 0.00 0.00 4.85
3752 4668 0.106268 TTCTTGCTTTGGTCCTGGCA 60.106 50.000 0.00 0.00 0.00 4.92
3852 4768 1.779061 TTGGGCTTGGAGGGACTGAC 61.779 60.000 0.00 0.00 41.55 3.51
4025 4941 2.359169 GGGAGCCACGATGGAGTGA 61.359 63.158 8.04 0.00 44.43 3.41
4064 4980 1.673700 GCTGCGCAAAAACATACCGC 61.674 55.000 13.05 2.90 44.39 5.68
4072 4988 3.910914 AAACATACCGCGCCAGCCA 62.911 57.895 0.00 0.00 41.18 4.75
4276 5192 1.884926 CGCCGAGGATTTCTGCTCC 60.885 63.158 0.00 0.00 36.55 4.70
4386 5302 3.469970 TCTCGTGGCGGCATCCAT 61.470 61.111 17.19 0.00 38.57 3.41
4395 5311 2.755469 GGCATCCATGTGCGGGTT 60.755 61.111 2.55 0.00 45.97 4.11
4556 5472 1.520342 GCAGAGATCGAGCCACCAC 60.520 63.158 0.00 0.00 0.00 4.16
4557 5473 1.142748 CAGAGATCGAGCCACCACC 59.857 63.158 0.00 0.00 0.00 4.61
4558 5474 1.305297 AGAGATCGAGCCACCACCA 60.305 57.895 0.00 0.00 0.00 4.17
4559 5475 0.904865 AGAGATCGAGCCACCACCAA 60.905 55.000 0.00 0.00 0.00 3.67
4560 5476 0.741221 GAGATCGAGCCACCACCAAC 60.741 60.000 0.00 0.00 0.00 3.77
4561 5477 1.003839 GATCGAGCCACCACCAACA 60.004 57.895 0.00 0.00 0.00 3.33
5071 5987 4.199310 ACTGAGCTCACAAAGTTTTGCTA 58.801 39.130 13.74 0.00 41.79 3.49
5213 6129 0.800012 TGTTAAATCGCCTCCGTTGC 59.200 50.000 0.00 0.00 35.54 4.17
5282 6198 1.560923 GTCGTGAACCTCATCGGATG 58.439 55.000 11.79 11.79 36.31 3.51
5284 6200 1.154205 CGTGAACCTCATCGGATGGC 61.154 60.000 17.42 4.04 36.31 4.40
5286 6202 0.617935 TGAACCTCATCGGATGGCAA 59.382 50.000 17.42 0.00 36.31 4.52
5287 6203 1.004161 TGAACCTCATCGGATGGCAAA 59.996 47.619 17.42 0.00 36.31 3.68
5288 6204 2.091541 GAACCTCATCGGATGGCAAAA 58.908 47.619 17.42 0.00 36.31 2.44
5289 6205 2.214376 ACCTCATCGGATGGCAAAAA 57.786 45.000 17.42 0.00 36.31 1.94
5291 6207 2.428171 ACCTCATCGGATGGCAAAAATG 59.572 45.455 17.42 0.00 36.31 2.32
5292 6208 2.466846 CTCATCGGATGGCAAAAATGC 58.533 47.619 17.42 0.00 0.00 3.56
5293 6209 2.100252 CTCATCGGATGGCAAAAATGCT 59.900 45.455 17.42 0.00 34.73 3.79
5294 6210 3.286353 TCATCGGATGGCAAAAATGCTA 58.714 40.909 17.42 0.00 34.73 3.49
5295 6211 3.066621 TCATCGGATGGCAAAAATGCTAC 59.933 43.478 17.42 0.00 34.73 3.58
5296 6212 2.441410 TCGGATGGCAAAAATGCTACA 58.559 42.857 0.00 0.00 34.73 2.74
5297 6213 2.163412 TCGGATGGCAAAAATGCTACAC 59.837 45.455 0.00 0.00 34.73 2.90
5299 6215 1.919918 GATGGCAAAAATGCTACACGC 59.080 47.619 0.00 0.00 39.77 5.34
5308 6224 2.506438 GCTACACGCACGGACTCC 60.506 66.667 0.00 0.00 38.92 3.85
5309 6225 2.991076 GCTACACGCACGGACTCCT 61.991 63.158 0.00 0.00 38.92 3.69
5311 6227 2.543687 CTACACGCACGGACTCCTGG 62.544 65.000 0.00 0.00 0.00 4.45
5314 6230 4.803426 CGCACGGACTCCTGGCTC 62.803 72.222 6.35 0.00 0.00 4.70
5315 6231 3.695606 GCACGGACTCCTGGCTCA 61.696 66.667 0.00 0.00 0.00 4.26
5316 6232 2.262915 CACGGACTCCTGGCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
5317 6233 3.374402 ACGGACTCCTGGCTCACG 61.374 66.667 0.00 0.00 0.00 4.35
5318 6234 4.135153 CGGACTCCTGGCTCACGG 62.135 72.222 0.00 0.00 0.00 4.94
5319 6235 2.680352 GGACTCCTGGCTCACGGA 60.680 66.667 0.00 0.00 0.00 4.69
5320 6236 2.574399 GACTCCTGGCTCACGGAC 59.426 66.667 0.00 0.00 0.00 4.79
5321 6237 1.979693 GACTCCTGGCTCACGGACT 60.980 63.158 0.00 0.00 0.00 3.85
5322 6238 1.534235 ACTCCTGGCTCACGGACTT 60.534 57.895 0.00 0.00 0.00 3.01
5324 6240 1.533033 TCCTGGCTCACGGACTTCA 60.533 57.895 0.00 0.00 0.00 3.02
5325 6241 1.374758 CCTGGCTCACGGACTTCAC 60.375 63.158 0.00 0.00 0.00 3.18
5327 6243 2.432628 GGCTCACGGACTTCACGG 60.433 66.667 0.00 0.00 35.23 4.94
5328 6244 2.432628 GCTCACGGACTTCACGGG 60.433 66.667 0.00 0.00 35.74 5.28
5329 6245 2.432628 CTCACGGACTTCACGGGC 60.433 66.667 0.00 0.00 34.09 6.13
5330 6246 3.934391 CTCACGGACTTCACGGGCC 62.934 68.421 0.00 0.00 34.09 5.80
5331 6247 4.003788 CACGGACTTCACGGGCCT 62.004 66.667 0.84 0.00 35.23 5.19
5332 6248 4.003788 ACGGACTTCACGGGCCTG 62.004 66.667 11.02 11.02 35.23 4.85
5335 6251 2.743928 GACTTCACGGGCCTGCTG 60.744 66.667 12.89 9.65 0.00 4.41
5337 6253 2.435586 CTTCACGGGCCTGCTGAG 60.436 66.667 12.89 2.60 0.00 3.35
5343 6259 4.792804 GGGCCTGCTGAGCTGTCC 62.793 72.222 5.83 4.07 0.00 4.02
5344 6260 3.715097 GGCCTGCTGAGCTGTCCT 61.715 66.667 5.83 0.00 0.00 3.85
5345 6261 2.436292 GCCTGCTGAGCTGTCCTG 60.436 66.667 5.83 0.00 0.00 3.86
5346 6262 3.067091 CCTGCTGAGCTGTCCTGT 58.933 61.111 5.83 0.00 0.00 4.00
5347 6263 1.374190 CCTGCTGAGCTGTCCTGTT 59.626 57.895 5.83 0.00 0.00 3.16
5348 6264 0.250640 CCTGCTGAGCTGTCCTGTTT 60.251 55.000 5.83 0.00 0.00 2.83
5349 6265 1.602311 CTGCTGAGCTGTCCTGTTTT 58.398 50.000 5.83 0.00 0.00 2.43
5350 6266 2.550855 CCTGCTGAGCTGTCCTGTTTTA 60.551 50.000 5.83 0.00 0.00 1.52
5352 6268 3.754965 TGCTGAGCTGTCCTGTTTTAAT 58.245 40.909 5.83 0.00 0.00 1.40
5353 6269 4.144297 TGCTGAGCTGTCCTGTTTTAATT 58.856 39.130 5.83 0.00 0.00 1.40
5354 6270 4.022935 TGCTGAGCTGTCCTGTTTTAATTG 60.023 41.667 5.83 0.00 0.00 2.32
5357 6273 2.562738 AGCTGTCCTGTTTTAATTGGCC 59.437 45.455 0.00 0.00 0.00 5.36
5358 6274 2.562738 GCTGTCCTGTTTTAATTGGCCT 59.437 45.455 3.32 0.00 0.00 5.19
5360 6276 4.219725 GCTGTCCTGTTTTAATTGGCCTAA 59.780 41.667 3.32 0.00 0.00 2.69
5361 6277 5.105351 GCTGTCCTGTTTTAATTGGCCTAAT 60.105 40.000 3.32 0.00 0.00 1.73
5362 6278 6.574269 GCTGTCCTGTTTTAATTGGCCTAATT 60.574 38.462 3.32 11.03 41.68 1.40
5363 6279 7.363443 GCTGTCCTGTTTTAATTGGCCTAATTA 60.363 37.037 3.32 10.01 39.61 1.40
5365 6281 9.041354 TGTCCTGTTTTAATTGGCCTAATTAAT 57.959 29.630 22.61 6.67 45.66 1.40
5366 6282 9.884636 GTCCTGTTTTAATTGGCCTAATTAATT 57.115 29.630 22.61 14.92 45.66 1.40
5376 6292 8.844865 ATTGGCCTAATTAATTTTCTTCTCCT 57.155 30.769 5.91 0.00 0.00 3.69
5377 6293 9.936329 ATTGGCCTAATTAATTTTCTTCTCCTA 57.064 29.630 5.91 0.00 0.00 2.94
5387 6303 6.694877 ATTTTCTTCTCCTAATTAACCGCC 57.305 37.500 0.00 0.00 0.00 6.13
5388 6304 5.431179 TTTCTTCTCCTAATTAACCGCCT 57.569 39.130 0.00 0.00 0.00 5.52
5389 6305 4.667519 TCTTCTCCTAATTAACCGCCTC 57.332 45.455 0.00 0.00 0.00 4.70
5392 6308 1.071857 CTCCTAATTAACCGCCTCCCC 59.928 57.143 0.00 0.00 0.00 4.81
5393 6309 0.109913 CCTAATTAACCGCCTCCCCC 59.890 60.000 0.00 0.00 0.00 5.40
5394 6310 1.137697 CTAATTAACCGCCTCCCCCT 58.862 55.000 0.00 0.00 0.00 4.79
5395 6311 0.841289 TAATTAACCGCCTCCCCCTG 59.159 55.000 0.00 0.00 0.00 4.45
5398 6314 0.917333 TTAACCGCCTCCCCCTGATT 60.917 55.000 0.00 0.00 0.00 2.57
5399 6315 0.917333 TAACCGCCTCCCCCTGATTT 60.917 55.000 0.00 0.00 0.00 2.17
5400 6316 0.917333 AACCGCCTCCCCCTGATTTA 60.917 55.000 0.00 0.00 0.00 1.40
5401 6317 0.917333 ACCGCCTCCCCCTGATTTAA 60.917 55.000 0.00 0.00 0.00 1.52
5414 6363 1.272425 TGATTTAACTGGTGGGCTGGG 60.272 52.381 0.00 0.00 0.00 4.45
5415 6364 0.614697 ATTTAACTGGTGGGCTGGGC 60.615 55.000 0.00 0.00 0.00 5.36
5416 6365 3.561120 TTAACTGGTGGGCTGGGCG 62.561 63.158 0.00 0.00 0.00 6.13
5431 6380 3.211963 GCGCCCAGCCCTGTAATG 61.212 66.667 0.00 0.00 40.81 1.90
5432 6381 3.211963 CGCCCAGCCCTGTAATGC 61.212 66.667 0.00 0.00 0.00 3.56
5433 6382 2.834968 GCCCAGCCCTGTAATGCC 60.835 66.667 0.00 0.00 0.00 4.40
5436 6385 2.516930 CAGCCCTGTAATGCCCCG 60.517 66.667 0.00 0.00 0.00 5.73
5438 6387 1.691337 AGCCCTGTAATGCCCCGTA 60.691 57.895 0.00 0.00 0.00 4.02
5439 6388 1.225148 GCCCTGTAATGCCCCGTAA 59.775 57.895 0.00 0.00 0.00 3.18
5440 6389 1.099295 GCCCTGTAATGCCCCGTAAC 61.099 60.000 0.00 0.00 0.00 2.50
5441 6390 0.544697 CCCTGTAATGCCCCGTAACT 59.455 55.000 0.00 0.00 0.00 2.24
5442 6391 1.764134 CCCTGTAATGCCCCGTAACTA 59.236 52.381 0.00 0.00 0.00 2.24
5443 6392 2.370849 CCCTGTAATGCCCCGTAACTAT 59.629 50.000 0.00 0.00 0.00 2.12
5444 6393 3.556423 CCCTGTAATGCCCCGTAACTATC 60.556 52.174 0.00 0.00 0.00 2.08
5446 6395 2.036217 TGTAATGCCCCGTAACTATCCG 59.964 50.000 0.00 0.00 0.00 4.18
5447 6396 1.125633 AATGCCCCGTAACTATCCGT 58.874 50.000 0.00 0.00 0.00 4.69
5449 6398 0.683828 TGCCCCGTAACTATCCGTGA 60.684 55.000 0.00 0.00 0.00 4.35
5450 6399 0.461135 GCCCCGTAACTATCCGTGAA 59.539 55.000 0.00 0.00 0.00 3.18
5451 6400 1.069668 GCCCCGTAACTATCCGTGAAT 59.930 52.381 0.00 0.00 0.00 2.57
5454 6403 3.318839 CCCCGTAACTATCCGTGAATGTA 59.681 47.826 0.00 0.00 0.00 2.29
5455 6404 4.543692 CCCGTAACTATCCGTGAATGTAG 58.456 47.826 0.00 0.00 0.00 2.74
5456 6405 3.979495 CCGTAACTATCCGTGAATGTAGC 59.021 47.826 0.00 0.00 0.00 3.58
5457 6406 4.498513 CCGTAACTATCCGTGAATGTAGCA 60.499 45.833 0.00 0.00 0.00 3.49
5458 6407 5.038683 CGTAACTATCCGTGAATGTAGCAA 58.961 41.667 0.00 0.00 0.00 3.91
5459 6408 5.517411 CGTAACTATCCGTGAATGTAGCAAA 59.483 40.000 0.00 0.00 0.00 3.68
5460 6409 6.291637 CGTAACTATCCGTGAATGTAGCAAAG 60.292 42.308 0.00 0.00 0.00 2.77
5461 6410 3.871594 ACTATCCGTGAATGTAGCAAAGC 59.128 43.478 0.00 0.00 0.00 3.51
5462 6411 2.472695 TCCGTGAATGTAGCAAAGCT 57.527 45.000 0.00 0.00 43.41 3.74
5464 6413 2.742053 TCCGTGAATGTAGCAAAGCTTC 59.258 45.455 0.00 0.00 40.44 3.86
5465 6414 2.483877 CCGTGAATGTAGCAAAGCTTCA 59.516 45.455 0.00 0.00 39.97 3.02
5466 6415 3.127548 CCGTGAATGTAGCAAAGCTTCAT 59.872 43.478 0.00 5.45 45.83 2.57
5467 6416 4.337763 CGTGAATGTAGCAAAGCTTCATC 58.662 43.478 10.78 6.42 43.78 2.92
5468 6417 4.337763 GTGAATGTAGCAAAGCTTCATCG 58.662 43.478 10.78 0.00 43.78 3.84
5469 6418 4.093408 GTGAATGTAGCAAAGCTTCATCGA 59.907 41.667 10.78 0.00 43.78 3.59
5494 6443 5.529289 TGGTTAGGAGGACACTGATATCTT 58.471 41.667 3.98 0.00 0.00 2.40
5498 6447 7.288158 GGTTAGGAGGACACTGATATCTTAGTT 59.712 40.741 3.98 0.00 0.00 2.24
5502 6451 7.566879 AGGAGGACACTGATATCTTAGTTCATT 59.433 37.037 3.98 0.00 0.00 2.57
5535 6484 3.074412 CCTAAACTTGACACCGATGCTT 58.926 45.455 0.00 0.00 0.00 3.91
5614 6563 0.246086 GTGTCACCTCAGCCTCTCAG 59.754 60.000 0.00 0.00 0.00 3.35
5616 6565 1.261480 GTCACCTCAGCCTCTCAGAA 58.739 55.000 0.00 0.00 0.00 3.02
5627 6576 2.224018 GCCTCTCAGAAGTGCTCATAGG 60.224 54.545 0.00 0.00 0.00 2.57
5638 6587 0.599060 GCTCATAGGAGTAGGGCGTC 59.401 60.000 6.23 0.00 43.37 5.19
5740 6692 4.912586 TGAAAAAGGACGACAATATGGGA 58.087 39.130 0.00 0.00 0.00 4.37
5744 6696 3.992943 AGGACGACAATATGGGAAACA 57.007 42.857 0.00 0.00 0.00 2.83
5746 6698 4.855340 AGGACGACAATATGGGAAACATT 58.145 39.130 0.00 0.00 41.03 2.71
5761 6713 5.059833 GGAAACATTAGATCTTGATCCGCT 58.940 41.667 0.00 0.00 0.00 5.52
5790 6742 3.229697 AGGTTACCTGCAAAAGAGCTT 57.770 42.857 1.74 0.00 34.99 3.74
5831 6784 7.331791 AGAAAGAAATACCACGCTTCTCTAAT 58.668 34.615 0.00 0.00 0.00 1.73
5838 6791 4.950050 ACCACGCTTCTCTAATCCAATAG 58.050 43.478 0.00 0.00 0.00 1.73
5847 6800 6.753913 TCTCTAATCCAATAGCCATGAGTT 57.246 37.500 0.00 0.00 0.00 3.01
5855 6808 4.141390 CCAATAGCCATGAGTTAAGACCCT 60.141 45.833 0.00 0.00 0.00 4.34
5856 6809 4.965200 ATAGCCATGAGTTAAGACCCTC 57.035 45.455 0.00 0.00 0.00 4.30
5857 6810 1.482593 AGCCATGAGTTAAGACCCTCG 59.517 52.381 0.00 0.00 0.00 4.63
5858 6811 1.941325 CCATGAGTTAAGACCCTCGC 58.059 55.000 0.00 0.00 0.00 5.03
5859 6812 1.473434 CCATGAGTTAAGACCCTCGCC 60.473 57.143 0.00 0.00 0.00 5.54
5860 6813 0.460311 ATGAGTTAAGACCCTCGCCG 59.540 55.000 0.00 0.00 0.00 6.46
5861 6814 0.609957 TGAGTTAAGACCCTCGCCGA 60.610 55.000 0.00 0.00 0.00 5.54
5862 6815 0.179142 GAGTTAAGACCCTCGCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
5863 6816 0.611340 AGTTAAGACCCTCGCCGACT 60.611 55.000 0.00 0.00 0.00 4.18
5864 6817 0.458025 GTTAAGACCCTCGCCGACTG 60.458 60.000 0.00 0.00 0.00 3.51
5865 6818 0.896940 TTAAGACCCTCGCCGACTGT 60.897 55.000 0.00 0.00 0.00 3.55
5866 6819 1.592400 TAAGACCCTCGCCGACTGTG 61.592 60.000 0.00 0.00 0.00 3.66
5871 6824 4.803426 CTCGCCGACTGTGCCCTC 62.803 72.222 0.00 0.00 0.00 4.30
5875 6828 2.047844 CCGACTGTGCCCTCAGTG 60.048 66.667 7.63 0.00 46.81 3.66
5876 6829 2.740055 CGACTGTGCCCTCAGTGC 60.740 66.667 7.63 0.61 46.81 4.40
5877 6830 2.746359 GACTGTGCCCTCAGTGCT 59.254 61.111 7.63 0.00 46.81 4.40
5878 6831 1.072159 GACTGTGCCCTCAGTGCTT 59.928 57.895 7.63 0.00 46.81 3.91
5879 6832 0.321671 GACTGTGCCCTCAGTGCTTA 59.678 55.000 7.63 0.00 46.81 3.09
5880 6833 0.035458 ACTGTGCCCTCAGTGCTTAC 59.965 55.000 2.52 0.00 45.40 2.34
5881 6834 0.035317 CTGTGCCCTCAGTGCTTACA 59.965 55.000 0.00 0.00 0.00 2.41
5882 6835 4.759995 ACTGTGCCCTCAGTGCTTACAC 62.760 54.545 2.52 0.00 45.40 2.90
5893 6846 2.393764 GTGCTTACACAACCACAATGC 58.606 47.619 0.00 0.00 46.61 3.56
5894 6847 1.001924 TGCTTACACAACCACAATGCG 60.002 47.619 0.00 0.00 0.00 4.73
5895 6848 1.001815 GCTTACACAACCACAATGCGT 60.002 47.619 0.00 0.00 0.00 5.24
5896 6849 2.542824 GCTTACACAACCACAATGCGTT 60.543 45.455 0.00 0.00 0.00 4.84
5897 6850 3.701241 CTTACACAACCACAATGCGTTT 58.299 40.909 0.00 0.00 0.00 3.60
5898 6851 1.919918 ACACAACCACAATGCGTTTG 58.080 45.000 0.00 0.00 41.36 2.93
5899 6852 1.474478 ACACAACCACAATGCGTTTGA 59.526 42.857 6.24 0.00 38.76 2.69
5900 6853 2.094494 ACACAACCACAATGCGTTTGAA 60.094 40.909 6.24 0.00 38.76 2.69
5901 6854 2.535166 CACAACCACAATGCGTTTGAAG 59.465 45.455 6.24 0.44 38.76 3.02
5902 6855 2.126467 CAACCACAATGCGTTTGAAGG 58.874 47.619 6.24 9.16 38.76 3.46
5903 6856 1.398692 ACCACAATGCGTTTGAAGGT 58.601 45.000 6.24 9.68 40.17 3.50
5904 6857 1.754226 ACCACAATGCGTTTGAAGGTT 59.246 42.857 6.24 0.00 41.28 3.50
5905 6858 2.126467 CCACAATGCGTTTGAAGGTTG 58.874 47.619 6.24 0.00 38.76 3.77
5906 6859 2.481104 CCACAATGCGTTTGAAGGTTGT 60.481 45.455 6.24 0.00 38.76 3.32
5907 6860 2.788786 CACAATGCGTTTGAAGGTTGTC 59.211 45.455 6.24 0.00 38.76 3.18
5908 6861 2.425312 ACAATGCGTTTGAAGGTTGTCA 59.575 40.909 6.24 0.00 38.76 3.58
5909 6862 3.119316 ACAATGCGTTTGAAGGTTGTCAA 60.119 39.130 6.24 0.00 38.76 3.18
5910 6863 4.050553 CAATGCGTTTGAAGGTTGTCAAT 58.949 39.130 0.00 0.00 37.36 2.57
5911 6864 3.347958 TGCGTTTGAAGGTTGTCAATC 57.652 42.857 0.00 0.00 37.36 2.67
5912 6865 2.948979 TGCGTTTGAAGGTTGTCAATCT 59.051 40.909 0.00 0.00 37.36 2.40
5913 6866 3.380004 TGCGTTTGAAGGTTGTCAATCTT 59.620 39.130 10.95 10.95 37.36 2.40
5914 6867 4.576873 TGCGTTTGAAGGTTGTCAATCTTA 59.423 37.500 11.12 0.00 37.36 2.10
5915 6868 5.066634 TGCGTTTGAAGGTTGTCAATCTTAA 59.933 36.000 11.12 0.95 37.36 1.85
5916 6869 5.625311 GCGTTTGAAGGTTGTCAATCTTAAG 59.375 40.000 11.12 0.00 37.36 1.85
5917 6870 6.142817 CGTTTGAAGGTTGTCAATCTTAAGG 58.857 40.000 11.12 5.45 37.36 2.69
5918 6871 5.705609 TTGAAGGTTGTCAATCTTAAGGC 57.294 39.130 11.12 0.05 32.56 4.35
5919 6872 3.751175 TGAAGGTTGTCAATCTTAAGGCG 59.249 43.478 11.12 0.00 0.00 5.52
5920 6873 3.418684 AGGTTGTCAATCTTAAGGCGT 57.581 42.857 1.85 0.00 0.00 5.68
5921 6874 3.335579 AGGTTGTCAATCTTAAGGCGTC 58.664 45.455 1.85 0.00 0.00 5.19
5922 6875 3.008049 AGGTTGTCAATCTTAAGGCGTCT 59.992 43.478 1.85 0.00 0.00 4.18
5923 6876 3.371285 GGTTGTCAATCTTAAGGCGTCTC 59.629 47.826 1.85 0.00 0.00 3.36
5924 6877 4.246458 GTTGTCAATCTTAAGGCGTCTCT 58.754 43.478 1.85 0.00 0.00 3.10
5925 6878 4.111375 TGTCAATCTTAAGGCGTCTCTC 57.889 45.455 1.85 0.00 0.00 3.20
5926 6879 3.764434 TGTCAATCTTAAGGCGTCTCTCT 59.236 43.478 1.85 0.00 0.00 3.10
5927 6880 4.142359 TGTCAATCTTAAGGCGTCTCTCTC 60.142 45.833 1.85 0.00 0.00 3.20
5928 6881 3.065510 TCAATCTTAAGGCGTCTCTCTCG 59.934 47.826 1.85 0.00 0.00 4.04
5929 6882 1.380524 TCTTAAGGCGTCTCTCTCGG 58.619 55.000 1.85 0.00 0.00 4.63
5935 6888 2.874709 GCGTCTCTCTCGGCATTAC 58.125 57.895 0.00 0.00 0.00 1.89
5936 6889 0.930742 GCGTCTCTCTCGGCATTACG 60.931 60.000 0.00 0.00 0.00 3.18
5937 6890 0.317103 CGTCTCTCTCGGCATTACGG 60.317 60.000 0.00 0.00 0.00 4.02
5938 6891 0.030908 GTCTCTCTCGGCATTACGGG 59.969 60.000 0.00 0.00 35.15 5.28
5939 6892 1.107538 TCTCTCTCGGCATTACGGGG 61.108 60.000 0.00 0.00 34.44 5.73
5940 6893 1.380785 TCTCTCGGCATTACGGGGT 60.381 57.895 0.00 0.00 34.44 4.95
5941 6894 0.974010 TCTCTCGGCATTACGGGGTT 60.974 55.000 0.00 0.00 34.44 4.11
5942 6895 0.810031 CTCTCGGCATTACGGGGTTG 60.810 60.000 0.00 0.00 34.44 3.77
5943 6896 1.078708 CTCGGCATTACGGGGTTGT 60.079 57.895 0.00 0.00 0.00 3.32
5944 6897 0.675522 CTCGGCATTACGGGGTTGTT 60.676 55.000 0.00 0.00 0.00 2.83
5945 6898 0.250814 TCGGCATTACGGGGTTGTTT 60.251 50.000 0.00 0.00 0.00 2.83
5946 6899 0.109504 CGGCATTACGGGGTTGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
5947 6900 0.245266 GGCATTACGGGGTTGTTTGG 59.755 55.000 0.00 0.00 0.00 3.28
5948 6901 1.249407 GCATTACGGGGTTGTTTGGA 58.751 50.000 0.00 0.00 0.00 3.53
5949 6902 1.822371 GCATTACGGGGTTGTTTGGAT 59.178 47.619 0.00 0.00 0.00 3.41
5950 6903 2.232696 GCATTACGGGGTTGTTTGGATT 59.767 45.455 0.00 0.00 0.00 3.01
5951 6904 3.843999 CATTACGGGGTTGTTTGGATTG 58.156 45.455 0.00 0.00 0.00 2.67
5952 6905 2.660670 TACGGGGTTGTTTGGATTGT 57.339 45.000 0.00 0.00 0.00 2.71
5953 6906 1.036707 ACGGGGTTGTTTGGATTGTG 58.963 50.000 0.00 0.00 0.00 3.33
5954 6907 1.323412 CGGGGTTGTTTGGATTGTGA 58.677 50.000 0.00 0.00 0.00 3.58
5955 6908 1.000717 CGGGGTTGTTTGGATTGTGAC 60.001 52.381 0.00 0.00 0.00 3.67
5956 6909 2.316108 GGGGTTGTTTGGATTGTGACT 58.684 47.619 0.00 0.00 0.00 3.41
5957 6910 3.492337 GGGGTTGTTTGGATTGTGACTA 58.508 45.455 0.00 0.00 0.00 2.59
5958 6911 4.086457 GGGGTTGTTTGGATTGTGACTAT 58.914 43.478 0.00 0.00 0.00 2.12
5959 6912 4.082245 GGGGTTGTTTGGATTGTGACTATG 60.082 45.833 0.00 0.00 0.00 2.23
5960 6913 4.522789 GGGTTGTTTGGATTGTGACTATGT 59.477 41.667 0.00 0.00 0.00 2.29
5961 6914 5.010617 GGGTTGTTTGGATTGTGACTATGTT 59.989 40.000 0.00 0.00 0.00 2.71
5962 6915 6.462347 GGGTTGTTTGGATTGTGACTATGTTT 60.462 38.462 0.00 0.00 0.00 2.83
5963 6916 6.420604 GGTTGTTTGGATTGTGACTATGTTTG 59.579 38.462 0.00 0.00 0.00 2.93
5964 6917 5.527951 TGTTTGGATTGTGACTATGTTTGC 58.472 37.500 0.00 0.00 0.00 3.68
5965 6918 4.782019 TTGGATTGTGACTATGTTTGCC 57.218 40.909 0.00 0.00 0.00 4.52
5966 6919 4.032960 TGGATTGTGACTATGTTTGCCT 57.967 40.909 0.00 0.00 0.00 4.75
5967 6920 4.406456 TGGATTGTGACTATGTTTGCCTT 58.594 39.130 0.00 0.00 0.00 4.35
5968 6921 5.565509 TGGATTGTGACTATGTTTGCCTTA 58.434 37.500 0.00 0.00 0.00 2.69
5969 6922 6.186957 TGGATTGTGACTATGTTTGCCTTAT 58.813 36.000 0.00 0.00 0.00 1.73
5970 6923 6.095300 TGGATTGTGACTATGTTTGCCTTATG 59.905 38.462 0.00 0.00 0.00 1.90
5971 6924 6.095440 GGATTGTGACTATGTTTGCCTTATGT 59.905 38.462 0.00 0.00 0.00 2.29
5972 6925 6.892658 TTGTGACTATGTTTGCCTTATGTT 57.107 33.333 0.00 0.00 0.00 2.71
5973 6926 6.252967 TGTGACTATGTTTGCCTTATGTTG 57.747 37.500 0.00 0.00 0.00 3.33
5974 6927 5.182950 TGTGACTATGTTTGCCTTATGTTGG 59.817 40.000 0.00 0.00 0.00 3.77
5988 6941 7.350110 CCTTATGTTGGCACATTACTTTTTG 57.650 36.000 7.65 0.00 41.16 2.44
5989 6942 6.128580 CCTTATGTTGGCACATTACTTTTTGC 60.129 38.462 7.65 0.00 41.16 3.68
5995 6948 3.716601 GCACATTACTTTTTGCCACACT 58.283 40.909 0.00 0.00 0.00 3.55
5996 6949 4.119136 GCACATTACTTTTTGCCACACTT 58.881 39.130 0.00 0.00 0.00 3.16
5997 6950 5.285651 GCACATTACTTTTTGCCACACTTA 58.714 37.500 0.00 0.00 0.00 2.24
5998 6951 5.174943 GCACATTACTTTTTGCCACACTTAC 59.825 40.000 0.00 0.00 0.00 2.34
5999 6952 5.689961 CACATTACTTTTTGCCACACTTACC 59.310 40.000 0.00 0.00 0.00 2.85
6000 6953 5.596772 ACATTACTTTTTGCCACACTTACCT 59.403 36.000 0.00 0.00 0.00 3.08
6001 6954 6.773685 ACATTACTTTTTGCCACACTTACCTA 59.226 34.615 0.00 0.00 0.00 3.08
6002 6955 7.285858 ACATTACTTTTTGCCACACTTACCTAA 59.714 33.333 0.00 0.00 0.00 2.69
6003 6956 5.509716 ACTTTTTGCCACACTTACCTAAC 57.490 39.130 0.00 0.00 0.00 2.34
6004 6957 5.198207 ACTTTTTGCCACACTTACCTAACT 58.802 37.500 0.00 0.00 0.00 2.24
6005 6958 5.655090 ACTTTTTGCCACACTTACCTAACTT 59.345 36.000 0.00 0.00 0.00 2.66
6006 6959 5.508200 TTTTGCCACACTTACCTAACTTG 57.492 39.130 0.00 0.00 0.00 3.16
6007 6960 4.425180 TTGCCACACTTACCTAACTTGA 57.575 40.909 0.00 0.00 0.00 3.02
6008 6961 4.002906 TGCCACACTTACCTAACTTGAG 57.997 45.455 0.00 0.00 0.00 3.02
6009 6962 3.389983 TGCCACACTTACCTAACTTGAGT 59.610 43.478 0.00 0.00 0.00 3.41
6010 6963 4.141574 TGCCACACTTACCTAACTTGAGTT 60.142 41.667 1.60 1.60 41.73 3.01
6011 6964 4.213482 GCCACACTTACCTAACTTGAGTTG 59.787 45.833 6.64 0.00 38.90 3.16
6012 6965 5.365619 CCACACTTACCTAACTTGAGTTGT 58.634 41.667 6.64 0.16 38.90 3.32
6013 6966 5.820947 CCACACTTACCTAACTTGAGTTGTT 59.179 40.000 6.64 0.00 38.90 2.83
6014 6967 6.018180 CCACACTTACCTAACTTGAGTTGTTC 60.018 42.308 6.64 0.00 38.90 3.18
6015 6968 6.537301 CACACTTACCTAACTTGAGTTGTTCA 59.463 38.462 6.64 0.00 38.90 3.18
6016 6969 7.065324 CACACTTACCTAACTTGAGTTGTTCAA 59.935 37.037 6.64 0.00 43.40 2.69
6017 6970 7.608761 ACACTTACCTAACTTGAGTTGTTCAAA 59.391 33.333 6.64 0.00 44.84 2.69
6018 6971 8.621286 CACTTACCTAACTTGAGTTGTTCAAAT 58.379 33.333 6.64 0.00 44.84 2.32
6019 6972 9.185680 ACTTACCTAACTTGAGTTGTTCAAATT 57.814 29.630 6.64 0.00 44.84 1.82
6020 6973 9.450807 CTTACCTAACTTGAGTTGTTCAAATTG 57.549 33.333 6.64 0.00 44.84 2.32
6021 6974 7.404671 ACCTAACTTGAGTTGTTCAAATTGT 57.595 32.000 6.64 0.00 44.84 2.71
6022 6975 7.836842 ACCTAACTTGAGTTGTTCAAATTGTT 58.163 30.769 6.64 0.00 44.84 2.83
6023 6976 8.962679 ACCTAACTTGAGTTGTTCAAATTGTTA 58.037 29.630 6.64 0.00 44.84 2.41
6024 6977 9.450807 CCTAACTTGAGTTGTTCAAATTGTTAG 57.549 33.333 6.64 14.34 44.84 2.34
6025 6978 7.755582 AACTTGAGTTGTTCAAATTGTTAGC 57.244 32.000 0.00 0.00 44.84 3.09
6026 6979 6.273071 ACTTGAGTTGTTCAAATTGTTAGCC 58.727 36.000 0.00 0.00 44.84 3.93
6027 6980 5.843673 TGAGTTGTTCAAATTGTTAGCCA 57.156 34.783 0.00 0.00 31.34 4.75
6028 6981 6.403866 TGAGTTGTTCAAATTGTTAGCCAT 57.596 33.333 0.00 0.00 31.34 4.40
6029 6982 7.517614 TGAGTTGTTCAAATTGTTAGCCATA 57.482 32.000 0.00 0.00 31.34 2.74
6030 6983 8.121305 TGAGTTGTTCAAATTGTTAGCCATAT 57.879 30.769 0.00 0.00 31.34 1.78
6031 6984 8.584157 TGAGTTGTTCAAATTGTTAGCCATATT 58.416 29.630 0.00 0.00 31.34 1.28
6032 6985 9.423061 GAGTTGTTCAAATTGTTAGCCATATTT 57.577 29.630 0.00 0.00 0.00 1.40
6033 6986 9.777297 AGTTGTTCAAATTGTTAGCCATATTTT 57.223 25.926 0.00 0.00 0.00 1.82
6036 6989 8.997323 TGTTCAAATTGTTAGCCATATTTTTGG 58.003 29.630 0.00 0.00 39.94 3.28
6047 7000 4.696455 CCATATTTTTGGCTTGCCTAAGG 58.304 43.478 13.18 5.16 34.40 2.69
6048 7001 4.443315 CCATATTTTTGGCTTGCCTAAGGG 60.443 45.833 13.18 5.90 34.40 3.95
6049 7002 2.390225 TTTTTGGCTTGCCTAAGGGA 57.610 45.000 13.18 0.00 34.40 4.20
6050 7003 2.390225 TTTTGGCTTGCCTAAGGGAA 57.610 45.000 13.18 0.00 34.40 3.97
6051 7004 2.621556 TTTGGCTTGCCTAAGGGAAT 57.378 45.000 13.18 0.00 31.43 3.01
6052 7005 2.621556 TTGGCTTGCCTAAGGGAATT 57.378 45.000 13.18 0.00 31.43 2.17
6053 7006 2.621556 TGGCTTGCCTAAGGGAATTT 57.378 45.000 13.18 0.00 31.43 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 116 0.754957 TGCCCCCACAAAAGTGACAG 60.755 55.000 0.00 0.00 0.00 3.51
152 162 3.609373 TGGTGATTAATCGTCGTTCGTTC 59.391 43.478 10.80 0.00 40.80 3.95
153 163 3.577667 TGGTGATTAATCGTCGTTCGTT 58.422 40.909 10.80 1.34 40.80 3.85
154 164 3.220507 TGGTGATTAATCGTCGTTCGT 57.779 42.857 10.80 0.00 40.80 3.85
155 165 3.538828 CGTTGGTGATTAATCGTCGTTCG 60.539 47.826 10.80 7.45 41.41 3.95
162 172 4.828291 ACGTTACGTTGGTGATTAATCG 57.172 40.909 3.95 1.00 36.35 3.34
174 184 9.681692 TCATATTTGCTGTATATACGTTACGTT 57.318 29.630 17.42 6.76 41.54 3.99
175 185 9.850628 ATCATATTTGCTGTATATACGTTACGT 57.149 29.630 16.31 16.31 44.35 3.57
308 322 0.169672 TGCTCCTACTACGTCGTTGC 59.830 55.000 1.78 0.00 0.00 4.17
338 352 3.890147 GCTGCCATGGTACTACTACTACT 59.110 47.826 14.67 0.00 0.00 2.57
339 353 3.304525 CGCTGCCATGGTACTACTACTAC 60.305 52.174 14.67 0.00 0.00 2.73
340 354 2.882761 CGCTGCCATGGTACTACTACTA 59.117 50.000 14.67 0.00 0.00 1.82
344 358 1.144057 GCGCTGCCATGGTACTACT 59.856 57.895 14.67 0.00 0.00 2.57
355 369 3.503363 CCACTGCTAAGCGCTGCC 61.503 66.667 12.58 2.46 40.84 4.85
379 393 1.153901 GCAGTGACATGCCACATGC 60.154 57.895 14.92 15.70 40.43 4.06
564 583 4.532126 ACACTCTCTCTCTCTCTTCTCTCA 59.468 45.833 0.00 0.00 0.00 3.27
568 587 4.202461 ACACACACTCTCTCTCTCTCTTCT 60.202 45.833 0.00 0.00 0.00 2.85
572 591 3.146066 ACACACACACTCTCTCTCTCTC 58.854 50.000 0.00 0.00 0.00 3.20
573 592 3.146066 GACACACACACTCTCTCTCTCT 58.854 50.000 0.00 0.00 0.00 3.10
574 593 3.058293 CAGACACACACACTCTCTCTCTC 60.058 52.174 0.00 0.00 0.00 3.20
575 594 2.884012 CAGACACACACACTCTCTCTCT 59.116 50.000 0.00 0.00 0.00 3.10
576 595 2.621055 ACAGACACACACACTCTCTCTC 59.379 50.000 0.00 0.00 0.00 3.20
577 596 2.360483 CACAGACACACACACTCTCTCT 59.640 50.000 0.00 0.00 0.00 3.10
585 604 3.552890 GCTCTCATACACAGACACACACA 60.553 47.826 0.00 0.00 0.00 3.72
594 613 0.387202 CCCTCCGCTCTCATACACAG 59.613 60.000 0.00 0.00 0.00 3.66
713 1267 1.539065 GCACACTGGACCGGATAGATG 60.539 57.143 9.46 3.03 0.00 2.90
876 1462 2.294078 CCTCCTCCTCCTTTGGCGT 61.294 63.158 0.00 0.00 0.00 5.68
883 1469 2.452114 CCACCACCTCCTCCTCCT 59.548 66.667 0.00 0.00 0.00 3.69
884 1470 2.122954 ACCACCACCTCCTCCTCC 59.877 66.667 0.00 0.00 0.00 4.30
885 1471 1.229209 TCACCACCACCTCCTCCTC 60.229 63.158 0.00 0.00 0.00 3.71
990 1580 2.956439 GCGCGCATCACTCGATCA 60.956 61.111 29.10 0.00 0.00 2.92
1356 1946 2.998480 TTGGAGAGCGCCGGGTTA 60.998 61.111 2.29 0.00 0.00 2.85
2576 3355 5.581350 ACTAGTAGGGAGGGTACAGATAC 57.419 47.826 1.45 0.00 0.00 2.24
2591 3370 8.917088 ACTACTCTACTTGAGGTCTACTAGTAG 58.083 40.741 21.87 21.87 46.72 2.57
2597 3376 5.499313 ACCACTACTCTACTTGAGGTCTAC 58.501 45.833 0.00 0.00 46.72 2.59
2669 3449 6.175471 TCACATGCTTCAGTTTAGATGACAT 58.825 36.000 0.00 0.00 0.00 3.06
2699 3480 1.409064 CAGCATGCATGATCAAGCCTT 59.591 47.619 30.64 5.16 31.66 4.35
2746 3527 4.963318 TCTCTCCATCTCTCTCTCTCTC 57.037 50.000 0.00 0.00 0.00 3.20
3036 3825 6.760770 GCCATATCAAACCATCTATCTAGAGC 59.239 42.308 0.00 0.00 35.50 4.09
3073 3862 6.012745 GCAGGGAAAATAATCATAGGGACAT 58.987 40.000 0.00 0.00 0.00 3.06
3074 3863 5.103728 TGCAGGGAAAATAATCATAGGGACA 60.104 40.000 0.00 0.00 0.00 4.02
3075 3864 5.385198 TGCAGGGAAAATAATCATAGGGAC 58.615 41.667 0.00 0.00 0.00 4.46
3076 3865 5.661503 TGCAGGGAAAATAATCATAGGGA 57.338 39.130 0.00 0.00 0.00 4.20
3191 4050 8.321650 TGGCAAAGTTTCCATCAATTTATTTC 57.678 30.769 3.51 0.00 0.00 2.17
3223 4082 5.575019 ACAAACAAAACGATGTCAAGTACC 58.425 37.500 0.00 0.00 31.81 3.34
3421 4310 2.752358 CCAGCCTCTGCCTTGACA 59.248 61.111 0.00 0.00 38.69 3.58
3442 4331 4.880537 CTGCAGCGTAGGCCCTCG 62.881 72.222 0.00 12.01 41.24 4.63
3751 4667 2.868583 CGAGTTTGGAGGTGCAGATATG 59.131 50.000 0.00 0.00 0.00 1.78
3752 4668 2.501723 ACGAGTTTGGAGGTGCAGATAT 59.498 45.455 0.00 0.00 0.00 1.63
3852 4768 0.449388 GTTGCTCCTTGAATGCTCCG 59.551 55.000 0.00 0.00 0.00 4.63
4025 4941 4.827087 CCGCTCCAGCTCATGCGT 62.827 66.667 18.21 0.00 45.90 5.24
4084 5000 3.838271 GCCTCCACGATCTCCGCA 61.838 66.667 0.00 0.00 43.32 5.69
4276 5192 2.105128 GCCCTCGAGACCACATCG 59.895 66.667 15.71 0.00 41.50 3.84
4310 5226 3.112709 GACGAGCACGAACCTGCC 61.113 66.667 11.40 0.00 42.66 4.85
4386 5302 1.612199 GGTCCTTGATAAACCCGCACA 60.612 52.381 0.00 0.00 0.00 4.57
4393 5309 3.181490 GGCCGAAATGGTCCTTGATAAAC 60.181 47.826 0.00 0.00 41.21 2.01
4395 5311 2.025793 TGGCCGAAATGGTCCTTGATAA 60.026 45.455 0.00 0.00 43.96 1.75
4556 5472 1.067516 CTTGCACTCCCTTGTTGTTGG 59.932 52.381 0.00 0.00 0.00 3.77
4557 5473 2.023673 TCTTGCACTCCCTTGTTGTTG 58.976 47.619 0.00 0.00 0.00 3.33
4558 5474 2.301346 CTCTTGCACTCCCTTGTTGTT 58.699 47.619 0.00 0.00 0.00 2.83
4559 5475 1.477558 CCTCTTGCACTCCCTTGTTGT 60.478 52.381 0.00 0.00 0.00 3.32
4560 5476 1.242076 CCTCTTGCACTCCCTTGTTG 58.758 55.000 0.00 0.00 0.00 3.33
4561 5477 0.111253 CCCTCTTGCACTCCCTTGTT 59.889 55.000 0.00 0.00 0.00 2.83
4696 5612 1.227853 GTGCAAGTCCCCGTGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
4790 5706 1.079819 CGAGCACTTCACGGATGGT 60.080 57.895 0.00 0.00 0.00 3.55
5213 6129 0.809241 GCACAGGAGCGAATCTGAGG 60.809 60.000 6.38 0.94 35.20 3.86
5265 6181 1.154205 GCCATCCGATGAGGTTCACG 61.154 60.000 10.12 0.00 41.99 4.35
5267 6183 0.617935 TTGCCATCCGATGAGGTTCA 59.382 50.000 10.12 0.00 41.99 3.18
5274 6190 2.589798 AGCATTTTTGCCATCCGATG 57.410 45.000 0.93 0.93 34.90 3.84
5275 6191 3.023119 TGTAGCATTTTTGCCATCCGAT 58.977 40.909 0.00 0.00 34.90 4.18
5277 6193 2.529151 GTGTAGCATTTTTGCCATCCG 58.471 47.619 0.00 0.00 34.90 4.18
5292 6208 1.154016 CAGGAGTCCGTGCGTGTAG 60.154 63.158 2.76 0.00 0.00 2.74
5293 6209 2.632544 CCAGGAGTCCGTGCGTGTA 61.633 63.158 2.76 0.00 0.00 2.90
5294 6210 3.991051 CCAGGAGTCCGTGCGTGT 61.991 66.667 2.76 0.00 0.00 4.49
5297 6213 4.803426 GAGCCAGGAGTCCGTGCG 62.803 72.222 17.02 2.84 31.91 5.34
5299 6215 2.262915 GTGAGCCAGGAGTCCGTG 59.737 66.667 2.76 2.64 0.00 4.94
5302 6218 2.680352 TCCGTGAGCCAGGAGTCC 60.680 66.667 0.00 0.00 31.95 3.85
5303 6219 1.536943 AAGTCCGTGAGCCAGGAGTC 61.537 60.000 0.00 0.00 39.14 3.36
5305 6221 1.216710 GAAGTCCGTGAGCCAGGAG 59.783 63.158 0.00 0.00 37.18 3.69
5306 6222 1.533033 TGAAGTCCGTGAGCCAGGA 60.533 57.895 0.00 0.00 0.00 3.86
5308 6224 1.734477 CGTGAAGTCCGTGAGCCAG 60.734 63.158 0.00 0.00 0.00 4.85
5309 6225 2.338620 CGTGAAGTCCGTGAGCCA 59.661 61.111 0.00 0.00 0.00 4.75
5311 6227 2.432628 CCCGTGAAGTCCGTGAGC 60.433 66.667 0.00 0.00 0.00 4.26
5312 6228 2.432628 GCCCGTGAAGTCCGTGAG 60.433 66.667 0.00 0.00 0.00 3.51
5313 6229 3.998672 GGCCCGTGAAGTCCGTGA 61.999 66.667 0.00 0.00 0.00 4.35
5314 6230 4.003788 AGGCCCGTGAAGTCCGTG 62.004 66.667 0.00 0.00 0.00 4.94
5315 6231 4.003788 CAGGCCCGTGAAGTCCGT 62.004 66.667 0.00 0.00 0.00 4.69
5317 6233 4.021925 AGCAGGCCCGTGAAGTCC 62.022 66.667 0.00 0.00 0.00 3.85
5318 6234 2.743928 CAGCAGGCCCGTGAAGTC 60.744 66.667 0.00 0.00 0.00 3.01
5319 6235 3.241530 TCAGCAGGCCCGTGAAGT 61.242 61.111 0.00 0.00 0.00 3.01
5320 6236 2.435586 CTCAGCAGGCCCGTGAAG 60.436 66.667 0.00 0.00 0.00 3.02
5321 6237 4.704833 GCTCAGCAGGCCCGTGAA 62.705 66.667 0.00 0.00 0.00 3.18
5327 6243 3.715097 AGGACAGCTCAGCAGGCC 61.715 66.667 5.58 5.58 44.02 5.19
5328 6244 2.436292 CAGGACAGCTCAGCAGGC 60.436 66.667 0.00 0.00 0.00 4.85
5329 6245 0.250640 AAACAGGACAGCTCAGCAGG 60.251 55.000 0.00 0.00 0.00 4.85
5330 6246 1.602311 AAAACAGGACAGCTCAGCAG 58.398 50.000 0.00 0.00 0.00 4.24
5331 6247 2.928801 TAAAACAGGACAGCTCAGCA 57.071 45.000 0.00 0.00 0.00 4.41
5332 6248 4.479619 CAATTAAAACAGGACAGCTCAGC 58.520 43.478 0.00 0.00 0.00 4.26
5335 6251 3.367395 GGCCAATTAAAACAGGACAGCTC 60.367 47.826 0.00 0.00 0.00 4.09
5337 6253 2.562738 AGGCCAATTAAAACAGGACAGC 59.437 45.455 5.01 0.00 0.00 4.40
5339 6255 6.926630 AATTAGGCCAATTAAAACAGGACA 57.073 33.333 5.01 0.00 34.99 4.02
5340 6256 9.884636 AATTAATTAGGCCAATTAAAACAGGAC 57.115 29.630 24.33 0.00 46.84 3.85
5350 6266 9.271921 AGGAGAAGAAAATTAATTAGGCCAATT 57.728 29.630 5.01 11.64 40.10 2.32
5352 6268 9.762381 TTAGGAGAAGAAAATTAATTAGGCCAA 57.238 29.630 5.01 0.00 0.00 4.52
5353 6269 9.936329 ATTAGGAGAAGAAAATTAATTAGGCCA 57.064 29.630 5.01 0.00 0.00 5.36
5361 6277 8.680001 GGCGGTTAATTAGGAGAAGAAAATTAA 58.320 33.333 0.00 0.00 33.58 1.40
5362 6278 8.050930 AGGCGGTTAATTAGGAGAAGAAAATTA 58.949 33.333 0.00 0.00 0.00 1.40
5363 6279 6.890268 AGGCGGTTAATTAGGAGAAGAAAATT 59.110 34.615 0.00 0.00 0.00 1.82
5365 6281 5.812286 AGGCGGTTAATTAGGAGAAGAAAA 58.188 37.500 0.00 0.00 0.00 2.29
5366 6282 5.425630 GAGGCGGTTAATTAGGAGAAGAAA 58.574 41.667 0.00 0.00 0.00 2.52
5367 6283 4.141779 GGAGGCGGTTAATTAGGAGAAGAA 60.142 45.833 0.00 0.00 0.00 2.52
5368 6284 3.387050 GGAGGCGGTTAATTAGGAGAAGA 59.613 47.826 0.00 0.00 0.00 2.87
5369 6285 3.494573 GGGAGGCGGTTAATTAGGAGAAG 60.495 52.174 0.00 0.00 0.00 2.85
5370 6286 2.436911 GGGAGGCGGTTAATTAGGAGAA 59.563 50.000 0.00 0.00 0.00 2.87
5372 6288 1.071857 GGGGAGGCGGTTAATTAGGAG 59.928 57.143 0.00 0.00 0.00 3.69
5373 6289 1.134228 GGGGAGGCGGTTAATTAGGA 58.866 55.000 0.00 0.00 0.00 2.94
5374 6290 0.109913 GGGGGAGGCGGTTAATTAGG 59.890 60.000 0.00 0.00 0.00 2.69
5376 6292 0.841289 CAGGGGGAGGCGGTTAATTA 59.159 55.000 0.00 0.00 0.00 1.40
5377 6293 0.917333 TCAGGGGGAGGCGGTTAATT 60.917 55.000 0.00 0.00 0.00 1.40
5380 6296 0.917333 AAATCAGGGGGAGGCGGTTA 60.917 55.000 0.00 0.00 0.00 2.85
5381 6297 0.917333 TAAATCAGGGGGAGGCGGTT 60.917 55.000 0.00 0.00 0.00 4.44
5382 6298 0.917333 TTAAATCAGGGGGAGGCGGT 60.917 55.000 0.00 0.00 0.00 5.68
5384 6300 0.546598 AGTTAAATCAGGGGGAGGCG 59.453 55.000 0.00 0.00 0.00 5.52
5386 6302 1.923148 ACCAGTTAAATCAGGGGGAGG 59.077 52.381 0.00 0.00 0.00 4.30
5387 6303 3.004752 CACCAGTTAAATCAGGGGGAG 57.995 52.381 0.00 0.00 0.00 4.30
5389 6305 1.341976 CCCACCAGTTAAATCAGGGGG 60.342 57.143 0.00 0.00 44.61 5.40
5392 6308 2.094675 CAGCCCACCAGTTAAATCAGG 58.905 52.381 0.00 0.00 0.00 3.86
5393 6309 2.094675 CCAGCCCACCAGTTAAATCAG 58.905 52.381 0.00 0.00 0.00 2.90
5394 6310 1.272425 CCCAGCCCACCAGTTAAATCA 60.272 52.381 0.00 0.00 0.00 2.57
5395 6311 1.474330 CCCAGCCCACCAGTTAAATC 58.526 55.000 0.00 0.00 0.00 2.17
5398 6314 2.438795 GCCCAGCCCACCAGTTAA 59.561 61.111 0.00 0.00 0.00 2.01
5399 6315 4.028490 CGCCCAGCCCACCAGTTA 62.028 66.667 0.00 0.00 0.00 2.24
5414 6363 3.211963 CATTACAGGGCTGGGCGC 61.212 66.667 0.00 0.00 41.91 6.53
5415 6364 3.211963 GCATTACAGGGCTGGGCG 61.212 66.667 0.00 0.00 34.19 6.13
5416 6365 2.834968 GGCATTACAGGGCTGGGC 60.835 66.667 0.00 0.00 34.19 5.36
5417 6366 2.123726 GGGCATTACAGGGCTGGG 60.124 66.667 0.00 0.00 34.19 4.45
5418 6367 2.123726 GGGGCATTACAGGGCTGG 60.124 66.667 0.00 0.00 34.19 4.85
5419 6368 1.978455 TACGGGGCATTACAGGGCTG 61.978 60.000 0.00 0.00 0.00 4.85
5420 6369 1.276140 TTACGGGGCATTACAGGGCT 61.276 55.000 0.00 0.00 0.00 5.19
5421 6370 1.099295 GTTACGGGGCATTACAGGGC 61.099 60.000 0.00 0.00 0.00 5.19
5423 6372 3.556423 GGATAGTTACGGGGCATTACAGG 60.556 52.174 0.00 0.00 0.00 4.00
5424 6373 3.660865 GGATAGTTACGGGGCATTACAG 58.339 50.000 0.00 0.00 0.00 2.74
5426 6375 2.036346 ACGGATAGTTACGGGGCATTAC 59.964 50.000 0.00 0.00 0.00 1.89
5427 6376 2.036217 CACGGATAGTTACGGGGCATTA 59.964 50.000 0.00 0.00 0.00 1.90
5428 6377 1.125633 ACGGATAGTTACGGGGCATT 58.874 50.000 0.00 0.00 0.00 3.56
5429 6378 0.391597 CACGGATAGTTACGGGGCAT 59.608 55.000 0.00 0.00 0.00 4.40
5430 6379 0.683828 TCACGGATAGTTACGGGGCA 60.684 55.000 0.00 0.00 33.57 5.36
5431 6380 0.461135 TTCACGGATAGTTACGGGGC 59.539 55.000 0.00 0.00 33.57 5.80
5432 6381 2.101917 ACATTCACGGATAGTTACGGGG 59.898 50.000 0.00 0.00 33.57 5.73
5433 6382 3.447918 ACATTCACGGATAGTTACGGG 57.552 47.619 0.00 0.00 34.17 5.28
5436 6385 6.509677 GCTTTGCTACATTCACGGATAGTTAC 60.510 42.308 0.00 0.00 0.00 2.50
5438 6387 4.332819 GCTTTGCTACATTCACGGATAGTT 59.667 41.667 0.00 0.00 0.00 2.24
5439 6388 3.871594 GCTTTGCTACATTCACGGATAGT 59.128 43.478 0.00 0.00 0.00 2.12
5440 6389 4.122776 AGCTTTGCTACATTCACGGATAG 58.877 43.478 0.00 0.00 36.99 2.08
5441 6390 4.137116 AGCTTTGCTACATTCACGGATA 57.863 40.909 0.00 0.00 36.99 2.59
5442 6391 2.991250 AGCTTTGCTACATTCACGGAT 58.009 42.857 0.00 0.00 36.99 4.18
5443 6392 2.472695 AGCTTTGCTACATTCACGGA 57.527 45.000 0.00 0.00 36.99 4.69
5444 6393 2.483877 TGAAGCTTTGCTACATTCACGG 59.516 45.455 0.00 0.00 38.25 4.94
5446 6395 4.093408 TCGATGAAGCTTTGCTACATTCAC 59.907 41.667 0.00 0.00 38.25 3.18
5447 6396 4.252878 TCGATGAAGCTTTGCTACATTCA 58.747 39.130 0.00 0.00 38.25 2.57
5449 6398 5.449588 CCATTCGATGAAGCTTTGCTACATT 60.450 40.000 0.00 0.00 38.25 2.71
5450 6399 4.036027 CCATTCGATGAAGCTTTGCTACAT 59.964 41.667 0.00 0.00 38.25 2.29
5451 6400 3.374988 CCATTCGATGAAGCTTTGCTACA 59.625 43.478 0.00 0.00 38.25 2.74
5454 6403 2.440409 ACCATTCGATGAAGCTTTGCT 58.560 42.857 0.00 0.00 42.56 3.91
5455 6404 2.927553 ACCATTCGATGAAGCTTTGC 57.072 45.000 0.00 0.00 0.00 3.68
5456 6405 4.635765 TCCTAACCATTCGATGAAGCTTTG 59.364 41.667 0.00 0.00 0.00 2.77
5457 6406 4.843728 TCCTAACCATTCGATGAAGCTTT 58.156 39.130 0.00 0.00 0.00 3.51
5458 6407 4.446371 CTCCTAACCATTCGATGAAGCTT 58.554 43.478 0.00 0.00 0.00 3.74
5459 6408 3.181461 CCTCCTAACCATTCGATGAAGCT 60.181 47.826 0.00 0.00 0.00 3.74
5460 6409 3.134458 CCTCCTAACCATTCGATGAAGC 58.866 50.000 0.00 0.00 0.00 3.86
5461 6410 4.141937 TGTCCTCCTAACCATTCGATGAAG 60.142 45.833 0.00 0.00 0.00 3.02
5462 6411 3.772572 TGTCCTCCTAACCATTCGATGAA 59.227 43.478 0.00 0.00 0.00 2.57
5464 6413 3.133003 AGTGTCCTCCTAACCATTCGATG 59.867 47.826 0.00 0.00 0.00 3.84
5465 6414 3.133003 CAGTGTCCTCCTAACCATTCGAT 59.867 47.826 0.00 0.00 0.00 3.59
5466 6415 2.496070 CAGTGTCCTCCTAACCATTCGA 59.504 50.000 0.00 0.00 0.00 3.71
5467 6416 2.496070 TCAGTGTCCTCCTAACCATTCG 59.504 50.000 0.00 0.00 0.00 3.34
5468 6417 4.762289 ATCAGTGTCCTCCTAACCATTC 57.238 45.455 0.00 0.00 0.00 2.67
5469 6418 6.146760 AGATATCAGTGTCCTCCTAACCATT 58.853 40.000 5.32 0.00 0.00 3.16
5512 6461 3.055094 AGCATCGGTGTCAAGTTTAGGAT 60.055 43.478 0.00 0.00 0.00 3.24
5514 6463 2.699954 AGCATCGGTGTCAAGTTTAGG 58.300 47.619 0.00 0.00 0.00 2.69
5523 6472 2.352503 AAAATGCAAGCATCGGTGTC 57.647 45.000 8.14 0.00 35.31 3.67
5528 6477 8.792831 ATAAATCTAGAAAAATGCAAGCATCG 57.207 30.769 8.14 0.00 35.31 3.84
5555 6504 4.819105 AATACATGACCGAAAGTCCTGA 57.181 40.909 0.00 0.00 45.68 3.86
5578 6527 8.585471 AGGTGACACATCATTTTGAGATTTAT 57.415 30.769 8.08 0.00 37.14 1.40
5580 6529 6.491062 TGAGGTGACACATCATTTTGAGATTT 59.509 34.615 18.43 0.00 33.61 2.17
5589 6538 1.632409 AGGCTGAGGTGACACATCATT 59.368 47.619 22.04 9.31 38.30 2.57
5600 6549 1.265236 CACTTCTGAGAGGCTGAGGT 58.735 55.000 0.00 0.00 35.62 3.85
5601 6550 0.108233 GCACTTCTGAGAGGCTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
5614 6563 2.036604 GCCCTACTCCTATGAGCACTTC 59.963 54.545 0.00 0.00 42.74 3.01
5616 6565 1.710816 GCCCTACTCCTATGAGCACT 58.289 55.000 0.00 0.00 42.74 4.40
5740 6692 5.297776 CCAAGCGGATCAAGATCTAATGTTT 59.702 40.000 9.69 0.93 37.92 2.83
5744 6696 4.802248 GCTCCAAGCGGATCAAGATCTAAT 60.802 45.833 9.69 0.00 41.79 1.73
5746 6698 2.036475 GCTCCAAGCGGATCAAGATCTA 59.964 50.000 9.69 0.00 41.79 1.98
5761 6713 0.321298 GCAGGTAACCTTCGCTCCAA 60.321 55.000 0.00 0.00 37.17 3.53
5766 6718 1.877443 TCTTTTGCAGGTAACCTTCGC 59.123 47.619 0.00 0.00 37.17 4.70
5790 6742 4.627058 TCTTTCTCTCATTACAACACGCA 58.373 39.130 0.00 0.00 0.00 5.24
5792 6744 8.169268 GGTATTTCTTTCTCTCATTACAACACG 58.831 37.037 0.00 0.00 0.00 4.49
5794 6746 8.999431 GTGGTATTTCTTTCTCTCATTACAACA 58.001 33.333 0.00 0.00 0.00 3.33
5831 6784 4.141482 GGGTCTTAACTCATGGCTATTGGA 60.141 45.833 0.00 0.00 0.00 3.53
5838 6791 1.941325 CGAGGGTCTTAACTCATGGC 58.059 55.000 0.00 0.00 33.36 4.40
5847 6800 1.303888 ACAGTCGGCGAGGGTCTTA 60.304 57.895 11.20 0.00 0.00 2.10
5857 6810 4.008933 ACTGAGGGCACAGTCGGC 62.009 66.667 10.05 0.00 46.36 5.54
5862 6815 0.035317 TGTAAGCACTGAGGGCACAG 59.965 55.000 10.32 8.90 42.78 3.66
5863 6816 0.250295 GTGTAAGCACTGAGGGCACA 60.250 55.000 10.32 1.83 42.13 4.57
5864 6817 0.250295 TGTGTAAGCACTGAGGGCAC 60.250 55.000 10.32 0.00 45.44 5.01
5865 6818 0.472044 TTGTGTAAGCACTGAGGGCA 59.528 50.000 10.32 0.00 45.44 5.36
5866 6819 0.875059 GTTGTGTAAGCACTGAGGGC 59.125 55.000 0.00 0.00 45.44 5.19
5867 6820 1.202758 TGGTTGTGTAAGCACTGAGGG 60.203 52.381 0.00 0.00 45.44 4.30
5868 6821 2.254546 TGGTTGTGTAAGCACTGAGG 57.745 50.000 0.00 0.00 45.44 3.86
5874 6827 1.001924 CGCATTGTGGTTGTGTAAGCA 60.002 47.619 0.00 0.00 41.62 3.91
5875 6828 1.001815 ACGCATTGTGGTTGTGTAAGC 60.002 47.619 1.77 0.00 36.13 3.09
5876 6829 3.347958 AACGCATTGTGGTTGTGTAAG 57.652 42.857 1.77 0.00 36.84 2.34
5877 6830 3.128764 TCAAACGCATTGTGGTTGTGTAA 59.871 39.130 23.33 5.60 40.98 2.41
5878 6831 2.683362 TCAAACGCATTGTGGTTGTGTA 59.317 40.909 23.33 5.93 40.98 2.90
5879 6832 1.474478 TCAAACGCATTGTGGTTGTGT 59.526 42.857 23.33 0.00 40.98 3.72
5880 6833 2.200792 TCAAACGCATTGTGGTTGTG 57.799 45.000 23.33 4.46 40.98 3.33
5881 6834 2.481104 CCTTCAAACGCATTGTGGTTGT 60.481 45.455 23.33 0.00 40.98 3.32
5882 6835 2.126467 CCTTCAAACGCATTGTGGTTG 58.874 47.619 19.57 19.57 41.46 3.77
5883 6836 1.754226 ACCTTCAAACGCATTGTGGTT 59.246 42.857 1.77 0.00 40.93 3.67
5884 6837 1.398692 ACCTTCAAACGCATTGTGGT 58.601 45.000 1.77 12.40 39.89 4.16
5885 6838 2.126467 CAACCTTCAAACGCATTGTGG 58.874 47.619 1.77 11.55 40.11 4.17
5886 6839 2.788786 GACAACCTTCAAACGCATTGTG 59.211 45.455 0.00 0.00 40.11 3.33
5887 6840 2.425312 TGACAACCTTCAAACGCATTGT 59.575 40.909 1.98 0.00 40.11 2.71
5888 6841 3.077229 TGACAACCTTCAAACGCATTG 57.923 42.857 0.00 0.00 40.58 2.82
5889 6842 3.791973 TTGACAACCTTCAAACGCATT 57.208 38.095 0.00 0.00 32.42 3.56
5890 6843 3.569701 AGATTGACAACCTTCAAACGCAT 59.430 39.130 0.00 0.00 38.95 4.73
5891 6844 2.948979 AGATTGACAACCTTCAAACGCA 59.051 40.909 0.00 0.00 38.95 5.24
5892 6845 3.626028 AGATTGACAACCTTCAAACGC 57.374 42.857 0.00 0.00 38.95 4.84
5893 6846 6.142817 CCTTAAGATTGACAACCTTCAAACG 58.857 40.000 3.36 0.00 38.95 3.60
5894 6847 5.920840 GCCTTAAGATTGACAACCTTCAAAC 59.079 40.000 3.36 0.00 38.95 2.93
5895 6848 5.278266 CGCCTTAAGATTGACAACCTTCAAA 60.278 40.000 3.36 0.00 38.95 2.69
5896 6849 4.215399 CGCCTTAAGATTGACAACCTTCAA 59.785 41.667 3.36 0.00 39.79 2.69
5897 6850 3.751175 CGCCTTAAGATTGACAACCTTCA 59.249 43.478 3.36 0.00 0.00 3.02
5898 6851 3.751698 ACGCCTTAAGATTGACAACCTTC 59.248 43.478 3.36 0.00 0.00 3.46
5899 6852 3.751518 ACGCCTTAAGATTGACAACCTT 58.248 40.909 3.36 0.00 0.00 3.50
5900 6853 3.008049 AGACGCCTTAAGATTGACAACCT 59.992 43.478 3.36 0.00 0.00 3.50
5901 6854 3.335579 AGACGCCTTAAGATTGACAACC 58.664 45.455 3.36 0.00 0.00 3.77
5902 6855 4.246458 AGAGACGCCTTAAGATTGACAAC 58.754 43.478 3.36 0.00 0.00 3.32
5903 6856 4.220821 AGAGAGACGCCTTAAGATTGACAA 59.779 41.667 3.36 0.00 0.00 3.18
5904 6857 3.764434 AGAGAGACGCCTTAAGATTGACA 59.236 43.478 3.36 0.00 0.00 3.58
5905 6858 4.356289 GAGAGAGACGCCTTAAGATTGAC 58.644 47.826 3.36 0.00 0.00 3.18
5906 6859 3.065510 CGAGAGAGACGCCTTAAGATTGA 59.934 47.826 3.36 0.00 0.00 2.57
5907 6860 3.367607 CGAGAGAGACGCCTTAAGATTG 58.632 50.000 3.36 0.00 0.00 2.67
5908 6861 2.359531 CCGAGAGAGACGCCTTAAGATT 59.640 50.000 3.36 0.00 0.00 2.40
5909 6862 1.950909 CCGAGAGAGACGCCTTAAGAT 59.049 52.381 3.36 0.00 0.00 2.40
5910 6863 1.380524 CCGAGAGAGACGCCTTAAGA 58.619 55.000 3.36 0.00 0.00 2.10
5911 6864 0.248702 GCCGAGAGAGACGCCTTAAG 60.249 60.000 0.00 0.00 0.00 1.85
5912 6865 0.963856 TGCCGAGAGAGACGCCTTAA 60.964 55.000 0.00 0.00 0.00 1.85
5913 6866 0.752009 ATGCCGAGAGAGACGCCTTA 60.752 55.000 0.00 0.00 0.00 2.69
5914 6867 1.608717 AATGCCGAGAGAGACGCCTT 61.609 55.000 0.00 0.00 0.00 4.35
5915 6868 0.752009 TAATGCCGAGAGAGACGCCT 60.752 55.000 0.00 0.00 0.00 5.52
5916 6869 0.595310 GTAATGCCGAGAGAGACGCC 60.595 60.000 0.00 0.00 0.00 5.68
5917 6870 0.930742 CGTAATGCCGAGAGAGACGC 60.931 60.000 0.00 0.00 0.00 5.19
5918 6871 0.317103 CCGTAATGCCGAGAGAGACG 60.317 60.000 0.00 0.00 0.00 4.18
5919 6872 0.030908 CCCGTAATGCCGAGAGAGAC 59.969 60.000 0.00 0.00 0.00 3.36
5920 6873 1.107538 CCCCGTAATGCCGAGAGAGA 61.108 60.000 0.00 0.00 0.00 3.10
5921 6874 1.364171 CCCCGTAATGCCGAGAGAG 59.636 63.158 0.00 0.00 0.00 3.20
5922 6875 0.974010 AACCCCGTAATGCCGAGAGA 60.974 55.000 0.00 0.00 0.00 3.10
5923 6876 0.810031 CAACCCCGTAATGCCGAGAG 60.810 60.000 0.00 0.00 0.00 3.20
5924 6877 1.219664 CAACCCCGTAATGCCGAGA 59.780 57.895 0.00 0.00 0.00 4.04
5925 6878 0.675522 AACAACCCCGTAATGCCGAG 60.676 55.000 0.00 0.00 0.00 4.63
5926 6879 0.250814 AAACAACCCCGTAATGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
5927 6880 0.109504 CAAACAACCCCGTAATGCCG 60.110 55.000 0.00 0.00 0.00 5.69
5928 6881 0.245266 CCAAACAACCCCGTAATGCC 59.755 55.000 0.00 0.00 0.00 4.40
5929 6882 1.249407 TCCAAACAACCCCGTAATGC 58.751 50.000 0.00 0.00 0.00 3.56
5930 6883 3.257127 ACAATCCAAACAACCCCGTAATG 59.743 43.478 0.00 0.00 0.00 1.90
5931 6884 3.257127 CACAATCCAAACAACCCCGTAAT 59.743 43.478 0.00 0.00 0.00 1.89
5932 6885 2.623889 CACAATCCAAACAACCCCGTAA 59.376 45.455 0.00 0.00 0.00 3.18
5933 6886 2.158652 TCACAATCCAAACAACCCCGTA 60.159 45.455 0.00 0.00 0.00 4.02
5934 6887 1.036707 CACAATCCAAACAACCCCGT 58.963 50.000 0.00 0.00 0.00 5.28
5935 6888 1.000717 GTCACAATCCAAACAACCCCG 60.001 52.381 0.00 0.00 0.00 5.73
5936 6889 2.316108 AGTCACAATCCAAACAACCCC 58.684 47.619 0.00 0.00 0.00 4.95
5937 6890 4.522789 ACATAGTCACAATCCAAACAACCC 59.477 41.667 0.00 0.00 0.00 4.11
5938 6891 5.705609 ACATAGTCACAATCCAAACAACC 57.294 39.130 0.00 0.00 0.00 3.77
5939 6892 6.074356 GCAAACATAGTCACAATCCAAACAAC 60.074 38.462 0.00 0.00 0.00 3.32
5940 6893 5.982516 GCAAACATAGTCACAATCCAAACAA 59.017 36.000 0.00 0.00 0.00 2.83
5941 6894 5.508825 GGCAAACATAGTCACAATCCAAACA 60.509 40.000 0.00 0.00 0.00 2.83
5942 6895 4.923281 GGCAAACATAGTCACAATCCAAAC 59.077 41.667 0.00 0.00 0.00 2.93
5943 6896 4.832266 AGGCAAACATAGTCACAATCCAAA 59.168 37.500 0.00 0.00 0.00 3.28
5944 6897 4.406456 AGGCAAACATAGTCACAATCCAA 58.594 39.130 0.00 0.00 0.00 3.53
5945 6898 4.032960 AGGCAAACATAGTCACAATCCA 57.967 40.909 0.00 0.00 0.00 3.41
5946 6899 6.095440 ACATAAGGCAAACATAGTCACAATCC 59.905 38.462 0.00 0.00 0.00 3.01
5947 6900 7.088589 ACATAAGGCAAACATAGTCACAATC 57.911 36.000 0.00 0.00 0.00 2.67
5948 6901 7.315142 CAACATAAGGCAAACATAGTCACAAT 58.685 34.615 0.00 0.00 0.00 2.71
5949 6902 6.294453 CCAACATAAGGCAAACATAGTCACAA 60.294 38.462 0.00 0.00 0.00 3.33
5950 6903 5.182950 CCAACATAAGGCAAACATAGTCACA 59.817 40.000 0.00 0.00 0.00 3.58
5951 6904 5.640732 CCAACATAAGGCAAACATAGTCAC 58.359 41.667 0.00 0.00 0.00 3.67
5952 6905 5.895636 CCAACATAAGGCAAACATAGTCA 57.104 39.130 0.00 0.00 0.00 3.41
5963 6916 4.718940 AAGTAATGTGCCAACATAAGGC 57.281 40.909 0.00 0.00 46.58 4.35
5964 6917 6.128580 GCAAAAAGTAATGTGCCAACATAAGG 60.129 38.462 0.00 0.00 46.58 2.69
5965 6918 6.820459 GCAAAAAGTAATGTGCCAACATAAG 58.180 36.000 0.00 0.00 46.58 1.73
5966 6919 6.777526 GCAAAAAGTAATGTGCCAACATAA 57.222 33.333 0.00 0.00 46.58 1.90
5974 6927 3.716601 AGTGTGGCAAAAAGTAATGTGC 58.283 40.909 0.00 0.00 36.24 4.57
5975 6928 5.689961 GGTAAGTGTGGCAAAAAGTAATGTG 59.310 40.000 0.00 0.00 0.00 3.21
5976 6929 5.596772 AGGTAAGTGTGGCAAAAAGTAATGT 59.403 36.000 0.00 0.00 0.00 2.71
5977 6930 6.084326 AGGTAAGTGTGGCAAAAAGTAATG 57.916 37.500 0.00 0.00 0.00 1.90
5978 6931 7.504574 AGTTAGGTAAGTGTGGCAAAAAGTAAT 59.495 33.333 0.00 0.00 0.00 1.89
5979 6932 6.829811 AGTTAGGTAAGTGTGGCAAAAAGTAA 59.170 34.615 0.00 0.00 0.00 2.24
5980 6933 6.358991 AGTTAGGTAAGTGTGGCAAAAAGTA 58.641 36.000 0.00 0.00 0.00 2.24
5981 6934 5.198207 AGTTAGGTAAGTGTGGCAAAAAGT 58.802 37.500 0.00 0.00 0.00 2.66
5982 6935 5.767816 AGTTAGGTAAGTGTGGCAAAAAG 57.232 39.130 0.00 0.00 0.00 2.27
5983 6936 5.652891 TCAAGTTAGGTAAGTGTGGCAAAAA 59.347 36.000 0.00 0.00 0.00 1.94
5984 6937 5.194432 TCAAGTTAGGTAAGTGTGGCAAAA 58.806 37.500 0.00 0.00 0.00 2.44
5985 6938 4.783055 TCAAGTTAGGTAAGTGTGGCAAA 58.217 39.130 0.00 0.00 0.00 3.68
5986 6939 4.141574 ACTCAAGTTAGGTAAGTGTGGCAA 60.142 41.667 0.00 0.00 0.00 4.52
5987 6940 3.389983 ACTCAAGTTAGGTAAGTGTGGCA 59.610 43.478 0.00 0.00 0.00 4.92
5988 6941 4.004196 ACTCAAGTTAGGTAAGTGTGGC 57.996 45.455 0.00 0.00 0.00 5.01
5989 6942 5.365619 ACAACTCAAGTTAGGTAAGTGTGG 58.634 41.667 0.00 0.00 36.32 4.17
5990 6943 6.537301 TGAACAACTCAAGTTAGGTAAGTGTG 59.463 38.462 0.00 0.00 36.32 3.82
5991 6944 6.646267 TGAACAACTCAAGTTAGGTAAGTGT 58.354 36.000 0.00 0.00 36.32 3.55
5992 6945 7.548196 TTGAACAACTCAAGTTAGGTAAGTG 57.452 36.000 0.00 0.00 39.20 3.16
5993 6946 8.747538 ATTTGAACAACTCAAGTTAGGTAAGT 57.252 30.769 0.00 0.00 44.84 2.24
5994 6947 9.450807 CAATTTGAACAACTCAAGTTAGGTAAG 57.549 33.333 0.00 0.00 44.84 2.34
5995 6948 8.962679 ACAATTTGAACAACTCAAGTTAGGTAA 58.037 29.630 2.79 0.00 44.84 2.85
5996 6949 8.514330 ACAATTTGAACAACTCAAGTTAGGTA 57.486 30.769 2.79 0.00 44.84 3.08
5997 6950 7.404671 ACAATTTGAACAACTCAAGTTAGGT 57.595 32.000 2.79 0.00 44.84 3.08
5998 6951 9.450807 CTAACAATTTGAACAACTCAAGTTAGG 57.549 33.333 2.79 0.00 44.84 2.69
5999 6952 8.958043 GCTAACAATTTGAACAACTCAAGTTAG 58.042 33.333 2.79 14.58 44.84 2.34
6000 6953 7.918562 GGCTAACAATTTGAACAACTCAAGTTA 59.081 33.333 2.79 0.00 44.84 2.24
6001 6954 6.756542 GGCTAACAATTTGAACAACTCAAGTT 59.243 34.615 2.79 0.00 44.84 2.66
6002 6955 6.127479 TGGCTAACAATTTGAACAACTCAAGT 60.127 34.615 2.79 0.00 44.84 3.16
6003 6956 6.272318 TGGCTAACAATTTGAACAACTCAAG 58.728 36.000 2.79 0.00 44.84 3.02
6004 6957 6.214191 TGGCTAACAATTTGAACAACTCAA 57.786 33.333 2.79 0.00 42.48 3.02
6005 6958 5.843673 TGGCTAACAATTTGAACAACTCA 57.156 34.783 2.79 0.00 0.00 3.41
6006 6959 8.986477 AATATGGCTAACAATTTGAACAACTC 57.014 30.769 2.79 0.00 0.00 3.01
6007 6960 9.777297 AAAATATGGCTAACAATTTGAACAACT 57.223 25.926 2.79 0.00 0.00 3.16
6010 6963 8.997323 CCAAAAATATGGCTAACAATTTGAACA 58.003 29.630 2.79 0.00 32.78 3.18
6025 6978 4.443315 CCCTTAGGCAAGCCAAAAATATGG 60.443 45.833 14.40 7.83 43.70 2.74
6026 6979 4.405358 TCCCTTAGGCAAGCCAAAAATATG 59.595 41.667 14.40 0.00 38.92 1.78
6027 6980 4.619679 TCCCTTAGGCAAGCCAAAAATAT 58.380 39.130 14.40 0.00 38.92 1.28
6028 6981 4.054359 TCCCTTAGGCAAGCCAAAAATA 57.946 40.909 14.40 0.00 38.92 1.40
6029 6982 2.901291 TCCCTTAGGCAAGCCAAAAAT 58.099 42.857 14.40 0.00 38.92 1.82
6030 6983 2.390225 TCCCTTAGGCAAGCCAAAAA 57.610 45.000 14.40 3.82 38.92 1.94
6031 6984 2.390225 TTCCCTTAGGCAAGCCAAAA 57.610 45.000 14.40 6.31 38.92 2.44
6032 6985 2.621556 ATTCCCTTAGGCAAGCCAAA 57.378 45.000 14.40 0.00 38.92 3.28
6033 6986 2.621556 AATTCCCTTAGGCAAGCCAA 57.378 45.000 14.40 4.98 38.92 4.52
6034 6987 2.621556 AAATTCCCTTAGGCAAGCCA 57.378 45.000 14.40 0.00 38.92 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.