Multiple sequence alignment - TraesCS2A01G270200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G270200 chr2A 100.000 3151 0 0 1 3151 438298520 438301670 0.000000e+00 5819
1 TraesCS2A01G270200 chr2A 88.696 345 38 1 2807 3151 474270767 474271110 1.350000e-113 420
2 TraesCS2A01G270200 chr2A 98.864 176 1 1 1 175 692745781 692745606 2.360000e-81 313
3 TraesCS2A01G270200 chr2A 85.345 116 15 2 1992 2106 686214510 686214396 5.520000e-23 119
4 TraesCS2A01G270200 chr2B 94.689 2617 91 20 170 2764 399706370 399708960 0.000000e+00 4019
5 TraesCS2A01G270200 chr2B 91.292 356 30 1 2797 3151 249577094 249576739 4.730000e-133 484
6 TraesCS2A01G270200 chr2B 97.778 180 3 1 1 179 120236742 120236563 3.050000e-80 309
7 TraesCS2A01G270200 chr2D 95.270 2410 70 14 194 2585 331177651 331180034 0.000000e+00 3779
8 TraesCS2A01G270200 chr2D 89.340 197 7 5 2577 2764 331180542 331180733 5.250000e-58 235
9 TraesCS2A01G270200 chr2D 86.207 116 14 2 1992 2106 543429272 543429158 1.190000e-24 124
10 TraesCS2A01G270200 chr4A 96.237 372 12 2 1498 1868 68460695 68460325 2.690000e-170 608
11 TraesCS2A01G270200 chr1B 95.957 371 14 1 1498 1867 94164390 94164760 4.500000e-168 601
12 TraesCS2A01G270200 chr1B 95.161 372 15 3 1498 1867 450455772 450456142 4.530000e-163 584
13 TraesCS2A01G270200 chr1B 90.169 356 24 3 2806 3151 454919492 454919846 1.330000e-123 453
14 TraesCS2A01G270200 chr1B 88.372 344 29 5 2808 3151 207904210 207904542 1.360000e-108 403
15 TraesCS2A01G270200 chr5B 94.624 372 19 1 1498 1868 56554029 56554400 2.730000e-160 575
16 TraesCS2A01G270200 chr3B 92.183 371 17 4 1498 1867 321756844 321757203 6.030000e-142 514
17 TraesCS2A01G270200 chr3B 88.764 356 36 2 2797 3151 406107798 406108150 1.740000e-117 433
18 TraesCS2A01G270200 chr3B 97.253 182 4 1 1 181 696324434 696324253 1.100000e-79 307
19 TraesCS2A01G270200 chr3A 92.219 347 26 1 2805 3151 573833599 573833254 1.020000e-134 490
20 TraesCS2A01G270200 chr4B 91.329 346 26 4 2807 3151 256262553 256262211 1.320000e-128 470
21 TraesCS2A01G270200 chr4D 91.040 346 31 0 2806 3151 119723907 119724252 4.760000e-128 468
22 TraesCS2A01G270200 chr5A 90.173 346 31 3 2807 3151 336920853 336920510 6.200000e-122 448
23 TraesCS2A01G270200 chr6B 87.430 358 33 3 2804 3151 370473943 370474298 4.900000e-108 401
24 TraesCS2A01G270200 chr6B 98.857 175 1 1 1 174 203932719 203932893 8.490000e-81 311
25 TraesCS2A01G270200 chr6B 98.857 175 1 1 1 174 279087919 279088093 8.490000e-81 311
26 TraesCS2A01G270200 chr1A 98.876 178 1 1 1 177 342386140 342385963 1.820000e-82 316
27 TraesCS2A01G270200 chr1A 97.253 182 3 2 1 180 252325333 252325152 1.100000e-79 307
28 TraesCS2A01G270200 chr6A 98.857 175 1 1 1 174 133803010 133802836 8.490000e-81 311
29 TraesCS2A01G270200 chr7B 96.774 186 2 4 1 183 237982283 237982467 1.100000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G270200 chr2A 438298520 438301670 3150 False 5819 5819 100.000 1 3151 1 chr2A.!!$F1 3150
1 TraesCS2A01G270200 chr2B 399706370 399708960 2590 False 4019 4019 94.689 170 2764 1 chr2B.!!$F1 2594
2 TraesCS2A01G270200 chr2D 331177651 331180733 3082 False 2007 3779 92.305 194 2764 2 chr2D.!!$F1 2570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.0 3.53 F
1690 1708 0.659957 GCAGATTCGATTCACCCAGC 59.340 55.000 9.78 2.57 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1759 3.243201 GCCGGTTCCATCATTCATTCTTC 60.243 47.826 1.9 0.0 0.0 2.87 R
3026 3591 0.252467 AGCCCACACTAGAGGAGCTT 60.252 55.000 0.0 0.0 31.6 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.909267 CATAATATGTTACCATCACATAGCGG 58.091 38.462 0.00 0.00 39.83 5.52
26 27 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
27 28 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
28 29 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
29 30 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
30 31 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
31 32 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
32 33 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
33 34 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
34 35 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
35 36 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
36 37 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
37 38 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
38 39 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
39 40 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
40 41 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
41 42 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
42 43 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
43 44 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
44 45 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
45 46 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
46 47 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
47 48 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
48 49 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
49 50 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
50 51 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
51 52 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
52 53 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
53 54 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
54 55 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
55 56 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
66 67 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
67 68 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
68 69 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
69 70 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
84 85 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
85 86 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
86 87 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
87 88 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
88 89 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
89 90 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
90 91 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
91 92 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
92 93 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
93 94 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
94 95 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
95 96 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
96 97 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
97 98 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
98 99 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
99 100 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
100 101 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
101 102 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
102 103 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
103 104 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
104 105 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
105 106 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
106 107 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
107 108 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
108 109 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
115 116 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
116 117 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
117 118 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
118 119 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
119 120 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
120 121 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
121 122 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
127 128 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
156 157 8.960591 TGTATGTTACTAGTGTAAGTTACTCCC 58.039 37.037 14.00 2.83 39.09 4.30
157 158 8.960591 GTATGTTACTAGTGTAAGTTACTCCCA 58.039 37.037 14.00 1.65 39.09 4.37
158 159 7.219484 TGTTACTAGTGTAAGTTACTCCCAC 57.781 40.000 14.00 4.20 39.09 4.61
159 160 7.006509 TGTTACTAGTGTAAGTTACTCCCACT 58.993 38.462 17.02 17.02 39.09 4.00
160 161 8.163408 TGTTACTAGTGTAAGTTACTCCCACTA 58.837 37.037 17.32 17.32 39.09 2.74
161 162 9.183368 GTTACTAGTGTAAGTTACTCCCACTAT 57.817 37.037 18.12 13.11 39.09 2.12
162 163 7.642082 ACTAGTGTAAGTTACTCCCACTATG 57.358 40.000 18.12 15.21 37.82 2.23
163 164 7.408543 ACTAGTGTAAGTTACTCCCACTATGA 58.591 38.462 18.12 5.42 37.82 2.15
164 165 6.527057 AGTGTAAGTTACTCCCACTATGAC 57.473 41.667 14.00 0.45 34.77 3.06
165 166 5.421374 AGTGTAAGTTACTCCCACTATGACC 59.579 44.000 14.00 0.00 34.77 4.02
166 167 5.186409 GTGTAAGTTACTCCCACTATGACCA 59.814 44.000 14.00 0.00 0.00 4.02
167 168 5.421056 TGTAAGTTACTCCCACTATGACCAG 59.579 44.000 14.00 0.00 0.00 4.00
168 169 2.766828 AGTTACTCCCACTATGACCAGC 59.233 50.000 0.00 0.00 0.00 4.85
172 173 2.292918 ACTCCCACTATGACCAGCCTAA 60.293 50.000 0.00 0.00 0.00 2.69
185 186 2.167075 CCAGCCTAAGCATTTCCTTTGG 59.833 50.000 0.00 0.00 43.56 3.28
198 199 3.439857 TCCTTTGGAGACCAGAAATGG 57.560 47.619 0.00 0.00 33.81 3.16
199 200 1.821136 CCTTTGGAGACCAGAAATGGC 59.179 52.381 0.00 0.00 33.81 4.40
212 213 2.476534 AAATGGCAGGACGCGCAAAG 62.477 55.000 5.73 0.00 43.84 2.77
239 241 4.629200 GTCAGAGCTCATGATTCTTTCGTT 59.371 41.667 17.77 0.00 0.00 3.85
514 519 4.040952 AGTCTCCTCTTGCAAGTTGTGTAT 59.959 41.667 25.19 6.48 0.00 2.29
522 527 5.236263 TCTTGCAAGTTGTGTATGTACAGTG 59.764 40.000 25.19 0.00 36.78 3.66
526 531 3.664107 AGTTGTGTATGTACAGTGCAGG 58.336 45.455 0.33 0.00 36.78 4.85
527 532 3.071023 AGTTGTGTATGTACAGTGCAGGT 59.929 43.478 0.33 0.00 36.78 4.00
542 547 2.280628 GCAGGTGTAGGATGTAACAGC 58.719 52.381 0.00 0.00 42.87 4.40
566 571 3.568007 GCACTGACAACTGGGTCAAATTA 59.432 43.478 6.02 0.00 46.36 1.40
917 930 4.814771 CGCCTTCTTTTATAATCCGACCTT 59.185 41.667 0.00 0.00 0.00 3.50
1690 1708 0.659957 GCAGATTCGATTCACCCAGC 59.340 55.000 9.78 2.57 0.00 4.85
1741 1759 1.401552 CCGGTGTTATCCATGTTGCTG 59.598 52.381 0.00 0.00 0.00 4.41
1769 1788 0.331278 ATGATGGAACCGGCAGGAAA 59.669 50.000 10.86 0.00 41.02 3.13
1856 1875 0.246635 ACTTCTCGTGGCGCAAGTAT 59.753 50.000 10.83 0.00 41.68 2.12
1859 1878 2.813179 CTCGTGGCGCAAGTATGGC 61.813 63.158 10.83 0.00 41.68 4.40
1922 1950 1.207488 TCCCTTCCCTCCACCATGTG 61.207 60.000 0.00 0.00 0.00 3.21
1923 1951 1.500783 CCCTTCCCTCCACCATGTGT 61.501 60.000 0.00 0.00 0.00 3.72
2219 2251 2.113860 ATGACCATGTTCCCTTCGTG 57.886 50.000 0.00 0.00 0.00 4.35
2287 2319 1.720852 CTTTTTCTTTTGGCCGCATCG 59.279 47.619 0.00 0.00 0.00 3.84
2321 2353 6.863126 GCACTAAGCATGTTGTAAAAGAACAT 59.137 34.615 0.00 0.00 43.34 2.71
2409 2445 4.277476 TGTGTTTCAGAGTTGGGTTTGAT 58.723 39.130 0.00 0.00 0.00 2.57
2410 2446 4.338118 TGTGTTTCAGAGTTGGGTTTGATC 59.662 41.667 0.00 0.00 0.00 2.92
2411 2447 3.888930 TGTTTCAGAGTTGGGTTTGATCC 59.111 43.478 0.00 0.00 0.00 3.36
2580 3138 0.874175 CGTTGACTCGTGTTGCTCCA 60.874 55.000 0.00 0.00 0.00 3.86
2592 3150 4.385405 GCTCCAGCGGTGCTCTGT 62.385 66.667 9.63 0.00 38.91 3.41
2593 3151 2.345244 CTCCAGCGGTGCTCTGTT 59.655 61.111 9.63 0.00 36.40 3.16
2594 3152 1.739562 CTCCAGCGGTGCTCTGTTC 60.740 63.158 9.63 0.00 36.40 3.18
2595 3153 2.164865 CTCCAGCGGTGCTCTGTTCT 62.165 60.000 9.63 0.00 36.40 3.01
2596 3154 2.031516 CCAGCGGTGCTCTGTTCTG 61.032 63.158 9.63 0.00 36.40 3.02
2616 3174 5.153513 TCTGCTCGATTATTGTTTGTTTGC 58.846 37.500 0.00 0.00 0.00 3.68
2624 3186 5.731599 TTATTGTTTGTTTGCTTGCTTGG 57.268 34.783 0.00 0.00 0.00 3.61
2625 3187 2.021355 TGTTTGTTTGCTTGCTTGGG 57.979 45.000 0.00 0.00 0.00 4.12
2626 3188 0.657312 GTTTGTTTGCTTGCTTGGGC 59.343 50.000 0.00 0.00 39.26 5.36
2627 3189 0.540923 TTTGTTTGCTTGCTTGGGCT 59.459 45.000 0.00 0.00 39.59 5.19
2628 3190 0.104671 TTGTTTGCTTGCTTGGGCTC 59.895 50.000 0.00 0.00 39.59 4.70
2765 3330 4.629115 GCTGTTGCGCGGTGCTTT 62.629 61.111 15.31 0.00 46.63 3.51
2766 3331 2.026014 CTGTTGCGCGGTGCTTTT 59.974 55.556 15.31 0.00 46.63 2.27
2767 3332 1.588667 CTGTTGCGCGGTGCTTTTT 60.589 52.632 15.31 0.00 46.63 1.94
2783 3348 2.682155 TTTTTCTTTTTGCGGGCAGT 57.318 40.000 0.00 0.00 0.00 4.40
2784 3349 1.933247 TTTTCTTTTTGCGGGCAGTG 58.067 45.000 0.00 0.00 0.00 3.66
2802 3367 3.425713 CTGTTGCGCGGTGCTGAT 61.426 61.111 15.31 0.00 46.63 2.90
2803 3368 2.047750 TGTTGCGCGGTGCTGATA 60.048 55.556 15.31 0.00 46.63 2.15
2804 3369 2.028766 CTGTTGCGCGGTGCTGATAG 62.029 60.000 15.31 7.36 46.63 2.08
2805 3370 2.100631 GTTGCGCGGTGCTGATAGT 61.101 57.895 15.31 0.00 46.63 2.12
2806 3371 2.100031 TTGCGCGGTGCTGATAGTG 61.100 57.895 15.31 0.00 46.63 2.74
2807 3372 3.264897 GCGCGGTGCTGATAGTGG 61.265 66.667 8.83 0.00 41.73 4.00
2808 3373 3.264897 CGCGGTGCTGATAGTGGC 61.265 66.667 0.00 0.00 0.00 5.01
2809 3374 2.897350 GCGGTGCTGATAGTGGCC 60.897 66.667 0.00 0.00 0.00 5.36
2810 3375 2.203070 CGGTGCTGATAGTGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
2811 3376 2.735772 CGGTGCTGATAGTGGCCCT 61.736 63.158 0.00 0.00 0.00 5.19
2812 3377 1.153086 GGTGCTGATAGTGGCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
2813 3378 1.604378 GTGCTGATAGTGGCCCTGT 59.396 57.895 0.00 0.00 0.00 4.00
2814 3379 0.035056 GTGCTGATAGTGGCCCTGTT 60.035 55.000 0.00 0.00 0.00 3.16
2815 3380 0.698238 TGCTGATAGTGGCCCTGTTT 59.302 50.000 0.00 0.00 0.00 2.83
2816 3381 1.098050 GCTGATAGTGGCCCTGTTTG 58.902 55.000 0.00 0.00 0.00 2.93
2817 3382 1.755179 CTGATAGTGGCCCTGTTTGG 58.245 55.000 0.00 0.00 0.00 3.28
2818 3383 1.281867 CTGATAGTGGCCCTGTTTGGA 59.718 52.381 0.00 0.00 38.35 3.53
2819 3384 1.922447 TGATAGTGGCCCTGTTTGGAT 59.078 47.619 0.00 0.00 38.35 3.41
2820 3385 3.119319 TGATAGTGGCCCTGTTTGGATA 58.881 45.455 0.00 0.00 38.35 2.59
2821 3386 3.525609 TGATAGTGGCCCTGTTTGGATAA 59.474 43.478 0.00 0.00 38.35 1.75
2822 3387 4.167892 TGATAGTGGCCCTGTTTGGATAAT 59.832 41.667 0.00 0.00 38.35 1.28
2823 3388 3.018423 AGTGGCCCTGTTTGGATAATC 57.982 47.619 0.00 0.00 38.35 1.75
2824 3389 2.582636 AGTGGCCCTGTTTGGATAATCT 59.417 45.455 0.00 0.00 38.35 2.40
2825 3390 3.785887 AGTGGCCCTGTTTGGATAATCTA 59.214 43.478 0.00 0.00 38.35 1.98
2826 3391 4.229582 AGTGGCCCTGTTTGGATAATCTAA 59.770 41.667 0.00 0.00 38.35 2.10
2827 3392 4.338400 GTGGCCCTGTTTGGATAATCTAAC 59.662 45.833 0.00 0.00 38.35 2.34
2828 3393 4.229582 TGGCCCTGTTTGGATAATCTAACT 59.770 41.667 0.00 0.00 38.35 2.24
2829 3394 5.201243 GGCCCTGTTTGGATAATCTAACTT 58.799 41.667 0.00 0.00 38.35 2.66
2830 3395 6.069323 TGGCCCTGTTTGGATAATCTAACTTA 60.069 38.462 0.00 0.00 38.35 2.24
2831 3396 6.831868 GGCCCTGTTTGGATAATCTAACTTAA 59.168 38.462 0.00 0.00 38.35 1.85
2832 3397 7.505923 GGCCCTGTTTGGATAATCTAACTTAAT 59.494 37.037 0.00 0.00 38.35 1.40
2833 3398 8.914011 GCCCTGTTTGGATAATCTAACTTAATT 58.086 33.333 0.00 0.00 38.35 1.40
2880 3445 9.650714 AACCTTAAATCAACCCTAAACTAACTT 57.349 29.630 0.00 0.00 0.00 2.66
2881 3446 9.650714 ACCTTAAATCAACCCTAAACTAACTTT 57.349 29.630 0.00 0.00 0.00 2.66
2892 3457 9.011095 ACCCTAAACTAACTTTAATCAAAGAGC 57.989 33.333 0.00 0.00 43.32 4.09
2893 3458 9.232473 CCCTAAACTAACTTTAATCAAAGAGCT 57.768 33.333 0.00 0.00 43.32 4.09
2898 3463 9.736023 AACTAACTTTAATCAAAGAGCTGTTTG 57.264 29.630 26.09 26.09 43.32 2.93
2899 3464 8.352942 ACTAACTTTAATCAAAGAGCTGTTTGG 58.647 33.333 29.68 17.84 43.32 3.28
2900 3465 6.959639 ACTTTAATCAAAGAGCTGTTTGGA 57.040 33.333 29.68 19.22 43.32 3.53
2901 3466 7.530426 ACTTTAATCAAAGAGCTGTTTGGAT 57.470 32.000 29.68 21.97 43.32 3.41
2902 3467 7.373493 ACTTTAATCAAAGAGCTGTTTGGATG 58.627 34.615 29.68 18.58 43.32 3.51
2903 3468 7.231317 ACTTTAATCAAAGAGCTGTTTGGATGA 59.769 33.333 29.68 15.60 43.32 2.92
2904 3469 7.707624 TTAATCAAAGAGCTGTTTGGATGAT 57.292 32.000 29.68 16.99 37.89 2.45
2905 3470 8.806429 TTAATCAAAGAGCTGTTTGGATGATA 57.194 30.769 29.68 14.31 37.89 2.15
2906 3471 6.939132 ATCAAAGAGCTGTTTGGATGATAG 57.061 37.500 29.68 7.88 37.89 2.08
2907 3472 6.053632 TCAAAGAGCTGTTTGGATGATAGA 57.946 37.500 29.68 10.48 37.89 1.98
2908 3473 6.111382 TCAAAGAGCTGTTTGGATGATAGAG 58.889 40.000 29.68 6.58 37.89 2.43
2909 3474 5.690464 AAGAGCTGTTTGGATGATAGAGT 57.310 39.130 0.00 0.00 0.00 3.24
2910 3475 5.690464 AGAGCTGTTTGGATGATAGAGTT 57.310 39.130 0.00 0.00 0.00 3.01
2911 3476 6.798427 AGAGCTGTTTGGATGATAGAGTTA 57.202 37.500 0.00 0.00 0.00 2.24
2912 3477 6.815089 AGAGCTGTTTGGATGATAGAGTTAG 58.185 40.000 0.00 0.00 0.00 2.34
2913 3478 6.609212 AGAGCTGTTTGGATGATAGAGTTAGA 59.391 38.462 0.00 0.00 0.00 2.10
2914 3479 7.289782 AGAGCTGTTTGGATGATAGAGTTAGAT 59.710 37.037 0.00 0.00 0.00 1.98
2915 3480 7.800092 AGCTGTTTGGATGATAGAGTTAGATT 58.200 34.615 0.00 0.00 0.00 2.40
2916 3481 7.714377 AGCTGTTTGGATGATAGAGTTAGATTG 59.286 37.037 0.00 0.00 0.00 2.67
2917 3482 7.712639 GCTGTTTGGATGATAGAGTTAGATTGA 59.287 37.037 0.00 0.00 0.00 2.57
2918 3483 9.775854 CTGTTTGGATGATAGAGTTAGATTGAT 57.224 33.333 0.00 0.00 0.00 2.57
2958 3523 9.958180 TCTCAATCATTTGACTAATTTAGACCA 57.042 29.630 10.39 5.11 36.94 4.02
2966 3531 8.698973 TTTGACTAATTTAGACCATGTTTGGA 57.301 30.769 10.39 0.00 46.92 3.53
2967 3532 8.877864 TTGACTAATTTAGACCATGTTTGGAT 57.122 30.769 10.39 0.00 46.92 3.41
2968 3533 8.279970 TGACTAATTTAGACCATGTTTGGATG 57.720 34.615 10.39 0.00 46.92 3.51
2969 3534 7.339212 TGACTAATTTAGACCATGTTTGGATGG 59.661 37.037 10.39 0.00 46.92 3.51
2970 3535 5.937975 AATTTAGACCATGTTTGGATGGG 57.062 39.130 0.00 0.00 46.46 4.00
2971 3536 4.666412 TTTAGACCATGTTTGGATGGGA 57.334 40.909 0.00 0.00 46.46 4.37
2972 3537 2.814805 AGACCATGTTTGGATGGGAG 57.185 50.000 0.00 0.00 46.46 4.30
2973 3538 1.285962 AGACCATGTTTGGATGGGAGG 59.714 52.381 0.00 0.00 46.46 4.30
2974 3539 0.336048 ACCATGTTTGGATGGGAGGG 59.664 55.000 0.00 0.00 46.46 4.30
2975 3540 0.397535 CCATGTTTGGATGGGAGGGG 60.398 60.000 0.00 0.00 46.92 4.79
2976 3541 0.336048 CATGTTTGGATGGGAGGGGT 59.664 55.000 0.00 0.00 0.00 4.95
2977 3542 1.568597 CATGTTTGGATGGGAGGGGTA 59.431 52.381 0.00 0.00 0.00 3.69
2978 3543 1.761711 TGTTTGGATGGGAGGGGTAA 58.238 50.000 0.00 0.00 0.00 2.85
2979 3544 1.356398 TGTTTGGATGGGAGGGGTAAC 59.644 52.381 0.00 0.00 0.00 2.50
2980 3545 1.639108 GTTTGGATGGGAGGGGTAACT 59.361 52.381 0.00 0.00 0.00 2.24
2981 3546 2.042569 GTTTGGATGGGAGGGGTAACTT 59.957 50.000 0.00 0.00 0.00 2.66
2982 3547 2.068831 TGGATGGGAGGGGTAACTTT 57.931 50.000 0.00 0.00 0.00 2.66
2983 3548 2.364190 TGGATGGGAGGGGTAACTTTT 58.636 47.619 0.00 0.00 0.00 2.27
2984 3549 2.725227 TGGATGGGAGGGGTAACTTTTT 59.275 45.455 0.00 0.00 0.00 1.94
3016 3581 5.578157 TTTTTAGTGGGCCTAAGAGAACT 57.422 39.130 4.53 0.00 36.98 3.01
3017 3582 6.691255 TTTTTAGTGGGCCTAAGAGAACTA 57.309 37.500 4.53 0.00 36.98 2.24
3018 3583 6.691255 TTTTAGTGGGCCTAAGAGAACTAA 57.309 37.500 4.53 5.67 36.98 2.24
3019 3584 6.691255 TTTAGTGGGCCTAAGAGAACTAAA 57.309 37.500 15.28 15.28 36.98 1.85
3020 3585 6.886178 TTAGTGGGCCTAAGAGAACTAAAT 57.114 37.500 4.53 0.00 31.89 1.40
3021 3586 5.360649 AGTGGGCCTAAGAGAACTAAATC 57.639 43.478 4.53 0.00 0.00 2.17
3022 3587 4.783227 AGTGGGCCTAAGAGAACTAAATCA 59.217 41.667 4.53 0.00 0.00 2.57
3023 3588 5.250774 AGTGGGCCTAAGAGAACTAAATCAA 59.749 40.000 4.53 0.00 0.00 2.57
3024 3589 5.944007 GTGGGCCTAAGAGAACTAAATCAAA 59.056 40.000 4.53 0.00 0.00 2.69
3025 3590 6.603599 GTGGGCCTAAGAGAACTAAATCAAAT 59.396 38.462 4.53 0.00 0.00 2.32
3026 3591 7.773690 GTGGGCCTAAGAGAACTAAATCAAATA 59.226 37.037 4.53 0.00 0.00 1.40
3027 3592 8.333235 TGGGCCTAAGAGAACTAAATCAAATAA 58.667 33.333 4.53 0.00 0.00 1.40
3028 3593 8.841300 GGGCCTAAGAGAACTAAATCAAATAAG 58.159 37.037 0.84 0.00 0.00 1.73
3029 3594 8.346300 GGCCTAAGAGAACTAAATCAAATAAGC 58.654 37.037 0.00 0.00 0.00 3.09
3030 3595 9.114952 GCCTAAGAGAACTAAATCAAATAAGCT 57.885 33.333 0.00 0.00 0.00 3.74
3034 3599 8.956533 AGAGAACTAAATCAAATAAGCTCCTC 57.043 34.615 0.00 0.00 0.00 3.71
3035 3600 8.767436 AGAGAACTAAATCAAATAAGCTCCTCT 58.233 33.333 0.00 0.00 0.00 3.69
3038 3603 9.825109 GAACTAAATCAAATAAGCTCCTCTAGT 57.175 33.333 0.00 0.00 0.00 2.57
3039 3604 9.606631 AACTAAATCAAATAAGCTCCTCTAGTG 57.393 33.333 0.00 0.00 0.00 2.74
3040 3605 8.763601 ACTAAATCAAATAAGCTCCTCTAGTGT 58.236 33.333 0.00 0.00 0.00 3.55
3041 3606 7.856145 AAATCAAATAAGCTCCTCTAGTGTG 57.144 36.000 0.00 0.00 0.00 3.82
3042 3607 5.344743 TCAAATAAGCTCCTCTAGTGTGG 57.655 43.478 0.00 0.00 0.00 4.17
3043 3608 4.162320 TCAAATAAGCTCCTCTAGTGTGGG 59.838 45.833 0.00 0.00 0.00 4.61
3044 3609 1.486211 TAAGCTCCTCTAGTGTGGGC 58.514 55.000 0.00 0.00 0.00 5.36
3045 3610 0.252467 AAGCTCCTCTAGTGTGGGCT 60.252 55.000 0.00 2.85 36.02 5.19
3046 3611 0.631753 AGCTCCTCTAGTGTGGGCTA 59.368 55.000 6.03 0.00 34.23 3.93
3047 3612 1.036707 GCTCCTCTAGTGTGGGCTAG 58.963 60.000 0.00 0.00 39.70 3.42
3048 3613 1.686741 GCTCCTCTAGTGTGGGCTAGT 60.687 57.143 0.00 0.00 39.44 2.57
3049 3614 2.741145 CTCCTCTAGTGTGGGCTAGTT 58.259 52.381 0.00 0.00 39.44 2.24
3050 3615 3.100671 CTCCTCTAGTGTGGGCTAGTTT 58.899 50.000 0.00 0.00 39.44 2.66
3051 3616 3.515901 CTCCTCTAGTGTGGGCTAGTTTT 59.484 47.826 0.00 0.00 39.44 2.43
3052 3617 3.908103 TCCTCTAGTGTGGGCTAGTTTTT 59.092 43.478 0.00 0.00 39.44 1.94
3072 3637 6.904463 TTTTTAGGGTGGGTTAGATCAAAC 57.096 37.500 0.00 0.00 0.00 2.93
3073 3638 5.853572 TTTAGGGTGGGTTAGATCAAACT 57.146 39.130 0.00 0.00 0.00 2.66
3074 3639 6.956102 TTTAGGGTGGGTTAGATCAAACTA 57.044 37.500 0.00 0.00 0.00 2.24
3075 3640 6.956102 TTAGGGTGGGTTAGATCAAACTAA 57.044 37.500 0.00 0.00 0.00 2.24
3076 3641 5.175388 AGGGTGGGTTAGATCAAACTAAC 57.825 43.478 0.00 0.00 46.41 2.34
3085 3650 7.865706 GTTAGATCAAACTAACCCATCATGT 57.134 36.000 0.00 0.00 43.43 3.21
3086 3651 8.281212 GTTAGATCAAACTAACCCATCATGTT 57.719 34.615 0.00 0.00 43.43 2.71
3087 3652 8.739972 GTTAGATCAAACTAACCCATCATGTTT 58.260 33.333 0.00 0.00 43.43 2.83
3088 3653 7.161773 AGATCAAACTAACCCATCATGTTTG 57.838 36.000 9.69 9.69 44.86 2.93
3089 3654 5.720371 TCAAACTAACCCATCATGTTTGG 57.280 39.130 14.21 9.62 44.13 3.28
3090 3655 5.389520 TCAAACTAACCCATCATGTTTGGA 58.610 37.500 16.06 0.00 44.13 3.53
3091 3656 6.015918 TCAAACTAACCCATCATGTTTGGAT 58.984 36.000 16.06 8.95 44.13 3.41
3092 3657 7.178573 TCAAACTAACCCATCATGTTTGGATA 58.821 34.615 16.06 9.45 44.13 2.59
3093 3658 7.838696 TCAAACTAACCCATCATGTTTGGATAT 59.161 33.333 16.06 6.83 44.13 1.63
3094 3659 8.477256 CAAACTAACCCATCATGTTTGGATATT 58.523 33.333 16.06 10.73 41.86 1.28
3095 3660 8.608185 AACTAACCCATCATGTTTGGATATTT 57.392 30.769 16.06 8.45 36.26 1.40
3096 3661 8.608185 ACTAACCCATCATGTTTGGATATTTT 57.392 30.769 16.06 6.36 36.26 1.82
3097 3662 9.045745 ACTAACCCATCATGTTTGGATATTTTT 57.954 29.630 16.06 5.13 36.26 1.94
3098 3663 9.316730 CTAACCCATCATGTTTGGATATTTTTG 57.683 33.333 16.06 3.08 36.26 2.44
3099 3664 6.652053 ACCCATCATGTTTGGATATTTTTGG 58.348 36.000 16.06 0.00 36.26 3.28
3100 3665 6.056884 CCCATCATGTTTGGATATTTTTGGG 58.943 40.000 16.06 0.00 36.26 4.12
3101 3666 6.352910 CCCATCATGTTTGGATATTTTTGGGT 60.353 38.462 16.06 0.00 36.26 4.51
3102 3667 7.111466 CCATCATGTTTGGATATTTTTGGGTT 58.889 34.615 10.75 0.00 36.26 4.11
3103 3668 8.263640 CCATCATGTTTGGATATTTTTGGGTTA 58.736 33.333 10.75 0.00 36.26 2.85
3104 3669 9.835389 CATCATGTTTGGATATTTTTGGGTTAT 57.165 29.630 0.00 0.00 0.00 1.89
3109 3674 9.717942 TGTTTGGATATTTTTGGGTTATTTGAG 57.282 29.630 0.00 0.00 0.00 3.02
3110 3675 8.664798 GTTTGGATATTTTTGGGTTATTTGAGC 58.335 33.333 0.00 0.00 0.00 4.26
3111 3676 6.883744 TGGATATTTTTGGGTTATTTGAGCC 58.116 36.000 0.00 0.00 37.70 4.70
3112 3677 6.126911 TGGATATTTTTGGGTTATTTGAGCCC 60.127 38.462 0.00 0.00 42.64 5.19
3113 3678 4.568072 ATTTTTGGGTTATTTGAGCCCC 57.432 40.909 0.00 0.00 41.66 5.80
3114 3679 2.704190 TTTGGGTTATTTGAGCCCCA 57.296 45.000 0.00 0.00 45.36 4.96
3116 3681 1.931635 TGGGTTATTTGAGCCCCAAC 58.068 50.000 0.00 0.00 44.09 3.77
3117 3682 1.431243 TGGGTTATTTGAGCCCCAACT 59.569 47.619 0.00 0.00 44.09 3.16
3118 3683 2.650322 TGGGTTATTTGAGCCCCAACTA 59.350 45.455 0.00 0.00 44.09 2.24
3119 3684 3.076182 TGGGTTATTTGAGCCCCAACTAA 59.924 43.478 0.00 0.00 44.09 2.24
3120 3685 3.446161 GGGTTATTTGAGCCCCAACTAAC 59.554 47.826 15.32 15.32 43.96 2.34
3121 3686 4.713824 GTTATTTGAGCCCCAACTAACC 57.286 45.455 13.82 3.18 41.33 2.85
3122 3687 2.990740 ATTTGAGCCCCAACTAACCA 57.009 45.000 0.00 0.00 33.85 3.67
3123 3688 2.757894 TTTGAGCCCCAACTAACCAA 57.242 45.000 0.00 0.00 33.85 3.67
3124 3689 2.757894 TTGAGCCCCAACTAACCAAA 57.242 45.000 0.00 0.00 0.00 3.28
3125 3690 2.757894 TGAGCCCCAACTAACCAAAA 57.242 45.000 0.00 0.00 0.00 2.44
3126 3691 2.312390 TGAGCCCCAACTAACCAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
3127 3692 2.091555 TGAGCCCCAACTAACCAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
3128 3693 3.138653 TGAGCCCCAACTAACCAAAACTA 59.861 43.478 0.00 0.00 0.00 2.24
3129 3694 4.146564 GAGCCCCAACTAACCAAAACTAA 58.853 43.478 0.00 0.00 0.00 2.24
3130 3695 3.893200 AGCCCCAACTAACCAAAACTAAC 59.107 43.478 0.00 0.00 0.00 2.34
3131 3696 3.893200 GCCCCAACTAACCAAAACTAACT 59.107 43.478 0.00 0.00 0.00 2.24
3132 3697 4.022589 GCCCCAACTAACCAAAACTAACTC 60.023 45.833 0.00 0.00 0.00 3.01
3133 3698 5.382616 CCCCAACTAACCAAAACTAACTCT 58.617 41.667 0.00 0.00 0.00 3.24
3134 3699 6.536447 CCCCAACTAACCAAAACTAACTCTA 58.464 40.000 0.00 0.00 0.00 2.43
3135 3700 6.999871 CCCCAACTAACCAAAACTAACTCTAA 59.000 38.462 0.00 0.00 0.00 2.10
3136 3701 7.040892 CCCCAACTAACCAAAACTAACTCTAAC 60.041 40.741 0.00 0.00 0.00 2.34
3137 3702 7.718314 CCCAACTAACCAAAACTAACTCTAACT 59.282 37.037 0.00 0.00 0.00 2.24
3138 3703 9.117183 CCAACTAACCAAAACTAACTCTAACTT 57.883 33.333 0.00 0.00 0.00 2.66
3141 3706 9.993454 ACTAACCAAAACTAACTCTAACTTAGG 57.007 33.333 0.00 0.00 0.00 2.69
3142 3707 9.433153 CTAACCAAAACTAACTCTAACTTAGGG 57.567 37.037 0.00 0.00 0.00 3.53
3143 3708 7.622502 ACCAAAACTAACTCTAACTTAGGGA 57.377 36.000 2.46 0.00 0.00 4.20
3144 3709 8.215954 ACCAAAACTAACTCTAACTTAGGGAT 57.784 34.615 2.46 0.00 0.00 3.85
3145 3710 8.319881 ACCAAAACTAACTCTAACTTAGGGATC 58.680 37.037 2.46 0.00 0.00 3.36
3146 3711 7.769507 CCAAAACTAACTCTAACTTAGGGATCC 59.230 40.741 1.92 1.92 0.00 3.36
3147 3712 8.319146 CAAAACTAACTCTAACTTAGGGATCCA 58.681 37.037 15.23 0.00 0.00 3.41
3148 3713 8.445361 AAACTAACTCTAACTTAGGGATCCAA 57.555 34.615 15.23 0.00 0.00 3.53
3149 3714 8.445361 AACTAACTCTAACTTAGGGATCCAAA 57.555 34.615 15.23 6.34 0.00 3.28
3150 3715 7.849160 ACTAACTCTAACTTAGGGATCCAAAC 58.151 38.462 15.23 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
9 10 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
10 11 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
11 12 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
12 13 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
13 14 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
14 15 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
15 16 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
16 17 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
17 18 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
18 19 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
19 20 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
20 21 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
21 22 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
22 23 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
23 24 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
24 25 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
25 26 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
26 27 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
27 28 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
28 29 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
29 30 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
40 41 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
41 42 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
42 43 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
43 44 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
44 45 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
52 53 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
53 54 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
54 55 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
73 74 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
74 75 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
75 76 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
76 77 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
77 78 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
78 79 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
79 80 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
80 81 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
81 82 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
82 83 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
83 84 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
84 85 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
85 86 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
86 87 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
87 88 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
92 93 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
93 94 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
94 95 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
95 96 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
101 102 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
130 131 8.960591 GGGAGTAACTTACACTAGTAACATACA 58.039 37.037 0.00 0.00 35.37 2.29
131 132 8.960591 TGGGAGTAACTTACACTAGTAACATAC 58.039 37.037 0.00 0.00 35.37 2.39
132 133 8.960591 GTGGGAGTAACTTACACTAGTAACATA 58.039 37.037 0.00 0.00 35.37 2.29
133 134 7.673082 AGTGGGAGTAACTTACACTAGTAACAT 59.327 37.037 0.00 0.00 40.31 2.71
134 135 7.006509 AGTGGGAGTAACTTACACTAGTAACA 58.993 38.462 0.00 0.00 40.31 2.41
135 136 7.459795 AGTGGGAGTAACTTACACTAGTAAC 57.540 40.000 0.00 0.00 40.31 2.50
136 137 9.182214 CATAGTGGGAGTAACTTACACTAGTAA 57.818 37.037 15.35 0.00 44.77 2.24
137 138 8.551440 TCATAGTGGGAGTAACTTACACTAGTA 58.449 37.037 15.35 6.93 44.77 1.82
138 139 7.338957 GTCATAGTGGGAGTAACTTACACTAGT 59.661 40.741 15.35 0.00 44.77 2.57
139 140 7.201803 GGTCATAGTGGGAGTAACTTACACTAG 60.202 44.444 15.35 9.95 44.77 2.57
140 141 6.604795 GGTCATAGTGGGAGTAACTTACACTA 59.395 42.308 13.45 13.45 45.38 2.74
141 142 5.421374 GGTCATAGTGGGAGTAACTTACACT 59.579 44.000 10.56 10.56 43.95 3.55
142 143 5.186409 TGGTCATAGTGGGAGTAACTTACAC 59.814 44.000 1.79 0.00 0.00 2.90
143 144 5.335261 TGGTCATAGTGGGAGTAACTTACA 58.665 41.667 1.79 0.00 0.00 2.41
144 145 5.681695 GCTGGTCATAGTGGGAGTAACTTAC 60.682 48.000 0.00 0.00 0.00 2.34
145 146 4.404715 GCTGGTCATAGTGGGAGTAACTTA 59.595 45.833 0.00 0.00 0.00 2.24
146 147 3.197983 GCTGGTCATAGTGGGAGTAACTT 59.802 47.826 0.00 0.00 0.00 2.66
147 148 2.766828 GCTGGTCATAGTGGGAGTAACT 59.233 50.000 0.00 0.00 0.00 2.24
148 149 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
149 150 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
150 151 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
151 152 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
152 153 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
153 154 2.398588 CTTAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
154 155 1.202698 GCTTAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
155 156 1.486310 TGCTTAGGCTGGTCATAGTGG 59.514 52.381 0.00 0.00 39.59 4.00
156 157 2.988010 TGCTTAGGCTGGTCATAGTG 57.012 50.000 0.00 0.00 39.59 2.74
157 158 4.455606 GAAATGCTTAGGCTGGTCATAGT 58.544 43.478 0.00 0.00 39.59 2.12
158 159 3.817647 GGAAATGCTTAGGCTGGTCATAG 59.182 47.826 0.00 0.00 39.59 2.23
159 160 3.459598 AGGAAATGCTTAGGCTGGTCATA 59.540 43.478 0.00 0.00 39.59 2.15
160 161 2.243221 AGGAAATGCTTAGGCTGGTCAT 59.757 45.455 0.00 0.00 39.59 3.06
161 162 1.635487 AGGAAATGCTTAGGCTGGTCA 59.365 47.619 0.00 0.00 39.59 4.02
162 163 2.426842 AGGAAATGCTTAGGCTGGTC 57.573 50.000 0.00 0.00 39.59 4.02
163 164 2.827921 CAAAGGAAATGCTTAGGCTGGT 59.172 45.455 0.00 0.00 39.59 4.00
164 165 2.167075 CCAAAGGAAATGCTTAGGCTGG 59.833 50.000 0.00 0.00 39.59 4.85
165 166 3.091545 TCCAAAGGAAATGCTTAGGCTG 58.908 45.455 0.00 0.00 39.59 4.85
166 167 3.010584 TCTCCAAAGGAAATGCTTAGGCT 59.989 43.478 0.00 0.00 39.59 4.58
167 168 3.129462 GTCTCCAAAGGAAATGCTTAGGC 59.871 47.826 0.00 0.00 39.26 3.93
168 169 3.696548 GGTCTCCAAAGGAAATGCTTAGG 59.303 47.826 0.00 0.00 0.00 2.69
172 173 2.376518 TCTGGTCTCCAAAGGAAATGCT 59.623 45.455 0.00 0.00 30.80 3.79
185 186 1.743996 GTCCTGCCATTTCTGGTCTC 58.256 55.000 0.00 0.00 45.10 3.36
198 199 1.441016 CTTTCTTTGCGCGTCCTGC 60.441 57.895 8.43 0.00 41.47 4.85
199 200 0.110644 GACTTTCTTTGCGCGTCCTG 60.111 55.000 8.43 0.00 0.00 3.86
212 213 6.455380 CGAAAGAATCATGAGCTCTGACTTTC 60.455 42.308 25.65 25.65 35.02 2.62
239 241 3.259064 GGTTCGTGGATTCAATTCGAGA 58.741 45.455 0.00 0.00 32.39 4.04
514 519 2.003937 TCCTACACCTGCACTGTACA 57.996 50.000 0.00 0.00 0.00 2.90
522 527 2.280628 GCTGTTACATCCTACACCTGC 58.719 52.381 0.00 0.00 0.00 4.85
526 531 2.673368 GTGCTGCTGTTACATCCTACAC 59.327 50.000 0.00 0.00 0.00 2.90
527 532 2.567169 AGTGCTGCTGTTACATCCTACA 59.433 45.455 0.00 0.00 0.00 2.74
542 547 0.179048 TGACCCAGTTGTCAGTGCTG 60.179 55.000 0.00 0.00 40.22 4.41
566 571 2.239400 GCCCAGGCTAGAAAACAACTT 58.761 47.619 0.08 0.00 38.26 2.66
641 653 2.671177 CCAACTGCAAGACGAGCGG 61.671 63.158 0.00 0.00 43.90 5.52
789 802 2.124942 GCTTCCCGGGCAAGAGAG 60.125 66.667 27.11 14.88 0.00 3.20
917 930 2.750637 GTGAGGGAGACGCGAGGA 60.751 66.667 15.93 0.00 0.00 3.71
1081 1099 3.785859 GAGGTGCTCCATCCCGCA 61.786 66.667 7.70 0.00 35.89 5.69
1741 1759 3.243201 GCCGGTTCCATCATTCATTCTTC 60.243 47.826 1.90 0.00 0.00 2.87
1922 1950 6.316390 CCAAACTCCAAGATTACTATGGTCAC 59.684 42.308 0.00 0.00 35.66 3.67
1923 1951 6.414732 CCAAACTCCAAGATTACTATGGTCA 58.585 40.000 0.00 0.00 35.66 4.02
1929 1960 4.288626 ACTGCCCAAACTCCAAGATTACTA 59.711 41.667 0.00 0.00 0.00 1.82
2202 2234 1.002087 AGTCACGAAGGGAACATGGTC 59.998 52.381 0.73 0.73 0.00 4.02
2219 2251 9.398538 AGTAGTAATATATGGTAGCTAGCAGTC 57.601 37.037 27.79 13.58 37.10 3.51
2256 2288 7.096065 CGGCCAAAAGAAAAAGAAATTCTAGTG 60.096 37.037 2.24 0.00 36.14 2.74
2257 2289 6.923508 CGGCCAAAAGAAAAAGAAATTCTAGT 59.076 34.615 2.24 0.00 36.14 2.57
2258 2290 6.128822 GCGGCCAAAAGAAAAAGAAATTCTAG 60.129 38.462 2.24 0.00 36.14 2.43
2287 2319 3.000727 ACATGCTTAGTGCGACTAAACC 58.999 45.455 9.16 5.46 46.63 3.27
2321 2353 2.878406 GCTCAAAGCTTCCAACTACACA 59.122 45.455 0.00 0.00 38.45 3.72
2580 3138 2.358003 GCAGAACAGAGCACCGCT 60.358 61.111 0.00 0.00 43.88 5.52
2592 3150 5.629020 GCAAACAAACAATAATCGAGCAGAA 59.371 36.000 0.00 0.00 0.00 3.02
2593 3151 5.048782 AGCAAACAAACAATAATCGAGCAGA 60.049 36.000 0.00 0.00 0.00 4.26
2594 3152 5.156355 AGCAAACAAACAATAATCGAGCAG 58.844 37.500 0.00 0.00 0.00 4.24
2595 3153 5.119931 AGCAAACAAACAATAATCGAGCA 57.880 34.783 0.00 0.00 0.00 4.26
2596 3154 5.666185 GCAAGCAAACAAACAATAATCGAGC 60.666 40.000 0.00 0.00 0.00 5.03
2616 3174 1.286880 CCAAACGAGCCCAAGCAAG 59.713 57.895 0.00 0.00 43.56 4.01
2670 3235 3.569049 GACCGGACGTCCACACTGG 62.569 68.421 32.80 26.04 39.43 4.00
2764 3329 2.275318 CACTGCCCGCAAAAAGAAAAA 58.725 42.857 0.00 0.00 0.00 1.94
2765 3330 1.933247 CACTGCCCGCAAAAAGAAAA 58.067 45.000 0.00 0.00 0.00 2.29
2766 3331 0.529555 GCACTGCCCGCAAAAAGAAA 60.530 50.000 0.00 0.00 0.00 2.52
2767 3332 1.067250 GCACTGCCCGCAAAAAGAA 59.933 52.632 0.00 0.00 0.00 2.52
2768 3333 1.827789 AGCACTGCCCGCAAAAAGA 60.828 52.632 0.00 0.00 0.00 2.52
2769 3334 1.662446 CAGCACTGCCCGCAAAAAG 60.662 57.895 0.00 0.00 0.00 2.27
2770 3335 1.954362 AACAGCACTGCCCGCAAAAA 61.954 50.000 0.00 0.00 0.00 1.94
2771 3336 2.422231 AACAGCACTGCCCGCAAAA 61.422 52.632 0.00 0.00 0.00 2.44
2772 3337 2.832661 AACAGCACTGCCCGCAAA 60.833 55.556 0.00 0.00 0.00 3.68
2773 3338 3.594775 CAACAGCACTGCCCGCAA 61.595 61.111 0.00 0.00 0.00 4.85
2780 3345 4.671549 CACCGCGCAACAGCACTG 62.672 66.667 8.75 0.00 36.85 3.66
2800 3365 2.736670 ATCCAAACAGGGCCACTATC 57.263 50.000 6.18 0.00 38.24 2.08
2801 3366 4.416848 AGATTATCCAAACAGGGCCACTAT 59.583 41.667 6.18 0.00 38.24 2.12
2802 3367 3.785887 AGATTATCCAAACAGGGCCACTA 59.214 43.478 6.18 0.00 38.24 2.74
2803 3368 2.582636 AGATTATCCAAACAGGGCCACT 59.417 45.455 6.18 0.00 38.24 4.00
2804 3369 3.018423 AGATTATCCAAACAGGGCCAC 57.982 47.619 6.18 0.00 38.24 5.01
2805 3370 4.229582 AGTTAGATTATCCAAACAGGGCCA 59.770 41.667 6.18 0.00 38.24 5.36
2806 3371 4.793201 AGTTAGATTATCCAAACAGGGCC 58.207 43.478 0.00 0.00 38.24 5.80
2807 3372 7.875327 TTAAGTTAGATTATCCAAACAGGGC 57.125 36.000 9.64 0.00 38.24 5.19
2854 3419 9.650714 AAGTTAGTTTAGGGTTGATTTAAGGTT 57.349 29.630 0.00 0.00 0.00 3.50
2855 3420 9.650714 AAAGTTAGTTTAGGGTTGATTTAAGGT 57.349 29.630 0.00 0.00 0.00 3.50
2866 3431 9.011095 GCTCTTTGATTAAAGTTAGTTTAGGGT 57.989 33.333 9.55 0.00 43.04 4.34
2867 3432 9.232473 AGCTCTTTGATTAAAGTTAGTTTAGGG 57.768 33.333 9.55 0.00 43.04 3.53
2872 3437 9.736023 CAAACAGCTCTTTGATTAAAGTTAGTT 57.264 29.630 8.63 7.94 43.04 2.24
2873 3438 8.352942 CCAAACAGCTCTTTGATTAAAGTTAGT 58.647 33.333 15.20 3.06 43.04 2.24
2874 3439 8.567948 TCCAAACAGCTCTTTGATTAAAGTTAG 58.432 33.333 15.20 2.74 43.04 2.34
2875 3440 8.458573 TCCAAACAGCTCTTTGATTAAAGTTA 57.541 30.769 15.20 0.00 43.04 2.24
2876 3441 7.346751 TCCAAACAGCTCTTTGATTAAAGTT 57.653 32.000 15.20 0.00 43.04 2.66
2877 3442 6.959639 TCCAAACAGCTCTTTGATTAAAGT 57.040 33.333 15.20 0.00 43.04 2.66
2878 3443 7.596494 TCATCCAAACAGCTCTTTGATTAAAG 58.404 34.615 15.20 3.62 43.72 1.85
2879 3444 7.523293 TCATCCAAACAGCTCTTTGATTAAA 57.477 32.000 15.20 0.00 33.61 1.52
2880 3445 7.707624 ATCATCCAAACAGCTCTTTGATTAA 57.292 32.000 15.20 0.21 33.61 1.40
2881 3446 8.267183 TCTATCATCCAAACAGCTCTTTGATTA 58.733 33.333 15.20 2.09 33.61 1.75
2882 3447 7.114754 TCTATCATCCAAACAGCTCTTTGATT 58.885 34.615 15.20 0.48 33.61 2.57
2883 3448 6.656902 TCTATCATCCAAACAGCTCTTTGAT 58.343 36.000 15.20 4.31 33.61 2.57
2884 3449 6.053632 TCTATCATCCAAACAGCTCTTTGA 57.946 37.500 15.20 3.16 33.61 2.69
2885 3450 5.879223 ACTCTATCATCCAAACAGCTCTTTG 59.121 40.000 7.43 7.43 0.00 2.77
2886 3451 6.059787 ACTCTATCATCCAAACAGCTCTTT 57.940 37.500 0.00 0.00 0.00 2.52
2887 3452 5.690464 ACTCTATCATCCAAACAGCTCTT 57.310 39.130 0.00 0.00 0.00 2.85
2888 3453 5.690464 AACTCTATCATCCAAACAGCTCT 57.310 39.130 0.00 0.00 0.00 4.09
2889 3454 6.810911 TCTAACTCTATCATCCAAACAGCTC 58.189 40.000 0.00 0.00 0.00 4.09
2890 3455 6.798427 TCTAACTCTATCATCCAAACAGCT 57.202 37.500 0.00 0.00 0.00 4.24
2891 3456 7.712639 TCAATCTAACTCTATCATCCAAACAGC 59.287 37.037 0.00 0.00 0.00 4.40
2892 3457 9.775854 ATCAATCTAACTCTATCATCCAAACAG 57.224 33.333 0.00 0.00 0.00 3.16
2932 3497 9.958180 TGGTCTAAATTAGTCAAATGATTGAGA 57.042 29.630 0.00 0.00 45.88 3.27
2939 3504 9.357652 CCAAACATGGTCTAAATTAGTCAAATG 57.642 33.333 0.00 5.56 0.00 2.32
2940 3505 9.308000 TCCAAACATGGTCTAAATTAGTCAAAT 57.692 29.630 0.00 0.00 0.00 2.32
2941 3506 8.698973 TCCAAACATGGTCTAAATTAGTCAAA 57.301 30.769 0.00 0.00 0.00 2.69
2942 3507 8.739039 CATCCAAACATGGTCTAAATTAGTCAA 58.261 33.333 0.00 0.00 0.00 3.18
2943 3508 7.339212 CCATCCAAACATGGTCTAAATTAGTCA 59.661 37.037 0.00 1.34 38.92 3.41
2944 3509 7.201821 CCCATCCAAACATGGTCTAAATTAGTC 60.202 40.741 0.00 0.00 41.84 2.59
2945 3510 6.607198 CCCATCCAAACATGGTCTAAATTAGT 59.393 38.462 0.00 0.00 41.84 2.24
2946 3511 6.833416 TCCCATCCAAACATGGTCTAAATTAG 59.167 38.462 0.00 0.00 41.84 1.73
2947 3512 6.736581 TCCCATCCAAACATGGTCTAAATTA 58.263 36.000 0.00 0.00 41.84 1.40
2948 3513 5.588845 TCCCATCCAAACATGGTCTAAATT 58.411 37.500 0.00 0.00 41.84 1.82
2949 3514 5.203528 CTCCCATCCAAACATGGTCTAAAT 58.796 41.667 0.00 0.00 41.84 1.40
2950 3515 4.569653 CCTCCCATCCAAACATGGTCTAAA 60.570 45.833 0.00 0.00 41.84 1.85
2951 3516 3.053693 CCTCCCATCCAAACATGGTCTAA 60.054 47.826 0.00 0.00 41.84 2.10
2952 3517 2.509548 CCTCCCATCCAAACATGGTCTA 59.490 50.000 0.00 0.00 41.84 2.59
2953 3518 1.285962 CCTCCCATCCAAACATGGTCT 59.714 52.381 0.00 0.00 41.84 3.85
2954 3519 1.686115 CCCTCCCATCCAAACATGGTC 60.686 57.143 0.00 0.00 41.84 4.02
2955 3520 0.336048 CCCTCCCATCCAAACATGGT 59.664 55.000 0.00 0.00 41.84 3.55
2956 3521 0.397535 CCCCTCCCATCCAAACATGG 60.398 60.000 0.00 0.00 42.91 3.66
2957 3522 0.336048 ACCCCTCCCATCCAAACATG 59.664 55.000 0.00 0.00 0.00 3.21
2958 3523 1.994399 TACCCCTCCCATCCAAACAT 58.006 50.000 0.00 0.00 0.00 2.71
2959 3524 1.356398 GTTACCCCTCCCATCCAAACA 59.644 52.381 0.00 0.00 0.00 2.83
2960 3525 1.639108 AGTTACCCCTCCCATCCAAAC 59.361 52.381 0.00 0.00 0.00 2.93
2961 3526 2.068831 AGTTACCCCTCCCATCCAAA 57.931 50.000 0.00 0.00 0.00 3.28
2962 3527 2.068831 AAGTTACCCCTCCCATCCAA 57.931 50.000 0.00 0.00 0.00 3.53
2963 3528 2.068831 AAAGTTACCCCTCCCATCCA 57.931 50.000 0.00 0.00 0.00 3.41
2964 3529 3.468071 AAAAAGTTACCCCTCCCATCC 57.532 47.619 0.00 0.00 0.00 3.51
2994 3559 5.578157 AGTTCTCTTAGGCCCACTAAAAA 57.422 39.130 0.00 0.00 40.97 1.94
2995 3560 6.691255 TTAGTTCTCTTAGGCCCACTAAAA 57.309 37.500 0.00 0.00 40.97 1.52
2996 3561 6.691255 TTTAGTTCTCTTAGGCCCACTAAA 57.309 37.500 0.00 4.79 40.97 1.85
2997 3562 6.442564 TGATTTAGTTCTCTTAGGCCCACTAA 59.557 38.462 0.00 0.00 39.31 2.24
2998 3563 5.962031 TGATTTAGTTCTCTTAGGCCCACTA 59.038 40.000 0.00 0.00 0.00 2.74
2999 3564 4.783227 TGATTTAGTTCTCTTAGGCCCACT 59.217 41.667 0.00 0.00 0.00 4.00
3000 3565 5.099042 TGATTTAGTTCTCTTAGGCCCAC 57.901 43.478 0.00 0.00 0.00 4.61
3001 3566 5.772393 TTGATTTAGTTCTCTTAGGCCCA 57.228 39.130 0.00 0.00 0.00 5.36
3002 3567 8.747538 TTATTTGATTTAGTTCTCTTAGGCCC 57.252 34.615 0.00 0.00 0.00 5.80
3003 3568 8.346300 GCTTATTTGATTTAGTTCTCTTAGGCC 58.654 37.037 0.00 0.00 0.00 5.19
3004 3569 9.114952 AGCTTATTTGATTTAGTTCTCTTAGGC 57.885 33.333 0.00 0.00 0.00 3.93
3008 3573 9.389755 GAGGAGCTTATTTGATTTAGTTCTCTT 57.610 33.333 0.00 0.00 0.00 2.85
3009 3574 8.767436 AGAGGAGCTTATTTGATTTAGTTCTCT 58.233 33.333 0.00 0.00 0.00 3.10
3010 3575 8.956533 AGAGGAGCTTATTTGATTTAGTTCTC 57.043 34.615 0.00 0.00 0.00 2.87
3012 3577 9.825109 ACTAGAGGAGCTTATTTGATTTAGTTC 57.175 33.333 0.00 0.00 0.00 3.01
3013 3578 9.606631 CACTAGAGGAGCTTATTTGATTTAGTT 57.393 33.333 0.00 0.00 0.00 2.24
3014 3579 8.763601 ACACTAGAGGAGCTTATTTGATTTAGT 58.236 33.333 0.00 0.00 0.00 2.24
3015 3580 9.039870 CACACTAGAGGAGCTTATTTGATTTAG 57.960 37.037 0.00 0.00 0.00 1.85
3016 3581 7.987458 CCACACTAGAGGAGCTTATTTGATTTA 59.013 37.037 0.00 0.00 0.00 1.40
3017 3582 6.825721 CCACACTAGAGGAGCTTATTTGATTT 59.174 38.462 0.00 0.00 0.00 2.17
3018 3583 6.352516 CCACACTAGAGGAGCTTATTTGATT 58.647 40.000 0.00 0.00 0.00 2.57
3019 3584 5.163258 CCCACACTAGAGGAGCTTATTTGAT 60.163 44.000 0.00 0.00 0.00 2.57
3020 3585 4.162320 CCCACACTAGAGGAGCTTATTTGA 59.838 45.833 0.00 0.00 0.00 2.69
3021 3586 4.446371 CCCACACTAGAGGAGCTTATTTG 58.554 47.826 0.00 0.00 0.00 2.32
3022 3587 3.118223 GCCCACACTAGAGGAGCTTATTT 60.118 47.826 0.00 0.00 0.00 1.40
3023 3588 2.436173 GCCCACACTAGAGGAGCTTATT 59.564 50.000 0.00 0.00 0.00 1.40
3024 3589 2.043227 GCCCACACTAGAGGAGCTTAT 58.957 52.381 0.00 0.00 0.00 1.73
3025 3590 1.007238 AGCCCACACTAGAGGAGCTTA 59.993 52.381 0.00 0.00 31.60 3.09
3026 3591 0.252467 AGCCCACACTAGAGGAGCTT 60.252 55.000 0.00 0.00 31.60 3.74
3027 3592 0.631753 TAGCCCACACTAGAGGAGCT 59.368 55.000 0.00 8.80 36.53 4.09
3028 3593 1.036707 CTAGCCCACACTAGAGGAGC 58.963 60.000 0.00 1.93 41.92 4.70
3029 3594 2.445682 ACTAGCCCACACTAGAGGAG 57.554 55.000 0.00 0.00 41.92 3.69
3030 3595 2.921834 AACTAGCCCACACTAGAGGA 57.078 50.000 0.00 0.00 41.92 3.71
3031 3596 3.983044 AAAACTAGCCCACACTAGAGG 57.017 47.619 0.00 0.00 41.92 3.69
3049 3614 6.616577 AGTTTGATCTAACCCACCCTAAAAA 58.383 36.000 15.14 0.00 0.00 1.94
3050 3615 6.208840 AGTTTGATCTAACCCACCCTAAAA 57.791 37.500 15.14 0.00 0.00 1.52
3051 3616 5.853572 AGTTTGATCTAACCCACCCTAAA 57.146 39.130 15.14 0.00 0.00 1.85
3052 3617 6.714278 GTTAGTTTGATCTAACCCACCCTAA 58.286 40.000 15.14 5.12 41.99 2.69
3053 3618 6.303903 GTTAGTTTGATCTAACCCACCCTA 57.696 41.667 15.14 0.00 41.99 3.53
3054 3619 5.175388 GTTAGTTTGATCTAACCCACCCT 57.825 43.478 15.14 0.38 41.99 4.34
3061 3626 7.865706 ACATGATGGGTTAGTTTGATCTAAC 57.134 36.000 11.50 11.50 45.03 2.34
3062 3627 8.877864 AAACATGATGGGTTAGTTTGATCTAA 57.122 30.769 0.00 0.00 31.81 2.10
3068 3633 5.720371 TCCAAACATGATGGGTTAGTTTG 57.280 39.130 18.08 0.00 45.10 2.93
3069 3634 8.608185 AATATCCAAACATGATGGGTTAGTTT 57.392 30.769 18.08 0.00 38.54 2.66
3070 3635 8.608185 AAATATCCAAACATGATGGGTTAGTT 57.392 30.769 18.08 7.99 38.54 2.24
3071 3636 8.608185 AAAATATCCAAACATGATGGGTTAGT 57.392 30.769 18.08 2.80 38.54 2.24
3072 3637 9.316730 CAAAAATATCCAAACATGATGGGTTAG 57.683 33.333 18.08 5.97 38.54 2.34
3073 3638 8.263640 CCAAAAATATCCAAACATGATGGGTTA 58.736 33.333 18.08 6.14 38.54 2.85
3074 3639 7.111466 CCAAAAATATCCAAACATGATGGGTT 58.889 34.615 18.08 4.23 38.54 4.11
3075 3640 6.352910 CCCAAAAATATCCAAACATGATGGGT 60.353 38.462 18.08 15.03 38.20 4.51
3076 3641 6.056884 CCCAAAAATATCCAAACATGATGGG 58.943 40.000 18.08 6.28 38.54 4.00
3077 3642 6.652053 ACCCAAAAATATCCAAACATGATGG 58.348 36.000 13.87 13.87 39.41 3.51
3078 3643 9.835389 ATAACCCAAAAATATCCAAACATGATG 57.165 29.630 0.00 0.00 0.00 3.07
3083 3648 9.717942 CTCAAATAACCCAAAAATATCCAAACA 57.282 29.630 0.00 0.00 0.00 2.83
3084 3649 8.664798 GCTCAAATAACCCAAAAATATCCAAAC 58.335 33.333 0.00 0.00 0.00 2.93
3085 3650 7.826744 GGCTCAAATAACCCAAAAATATCCAAA 59.173 33.333 0.00 0.00 0.00 3.28
3086 3651 7.334858 GGCTCAAATAACCCAAAAATATCCAA 58.665 34.615 0.00 0.00 0.00 3.53
3087 3652 6.126911 GGGCTCAAATAACCCAAAAATATCCA 60.127 38.462 0.00 0.00 43.64 3.41
3088 3653 6.288294 GGGCTCAAATAACCCAAAAATATCC 58.712 40.000 0.00 0.00 43.64 2.59
3089 3654 6.288294 GGGGCTCAAATAACCCAAAAATATC 58.712 40.000 0.00 0.00 46.21 1.63
3090 3655 6.247229 GGGGCTCAAATAACCCAAAAATAT 57.753 37.500 0.00 0.00 46.21 1.28
3091 3656 5.685520 GGGGCTCAAATAACCCAAAAATA 57.314 39.130 0.00 0.00 46.21 1.40
3092 3657 4.568072 GGGGCTCAAATAACCCAAAAAT 57.432 40.909 0.00 0.00 46.21 1.82
3098 3663 2.231716 AGTTGGGGCTCAAATAACCC 57.768 50.000 0.00 0.00 43.44 4.11
3101 3666 4.390129 TGGTTAGTTGGGGCTCAAATAA 57.610 40.909 15.41 15.41 41.67 1.40
3102 3667 4.390129 TTGGTTAGTTGGGGCTCAAATA 57.610 40.909 0.00 0.95 37.08 1.40
3103 3668 2.990740 TGGTTAGTTGGGGCTCAAAT 57.009 45.000 5.05 5.05 37.08 2.32
3104 3669 2.757894 TTGGTTAGTTGGGGCTCAAA 57.242 45.000 0.00 0.00 37.08 2.69
3105 3670 2.696187 GTTTTGGTTAGTTGGGGCTCAA 59.304 45.455 0.00 0.00 0.00 3.02
3106 3671 2.091555 AGTTTTGGTTAGTTGGGGCTCA 60.092 45.455 0.00 0.00 0.00 4.26
3107 3672 2.594131 AGTTTTGGTTAGTTGGGGCTC 58.406 47.619 0.00 0.00 0.00 4.70
3108 3673 2.767644 AGTTTTGGTTAGTTGGGGCT 57.232 45.000 0.00 0.00 0.00 5.19
3109 3674 3.893200 AGTTAGTTTTGGTTAGTTGGGGC 59.107 43.478 0.00 0.00 0.00 5.80
3110 3675 5.382616 AGAGTTAGTTTTGGTTAGTTGGGG 58.617 41.667 0.00 0.00 0.00 4.96
3111 3676 7.718314 AGTTAGAGTTAGTTTTGGTTAGTTGGG 59.282 37.037 0.00 0.00 0.00 4.12
3112 3677 8.672823 AGTTAGAGTTAGTTTTGGTTAGTTGG 57.327 34.615 0.00 0.00 0.00 3.77
3115 3680 9.993454 CCTAAGTTAGAGTTAGTTTTGGTTAGT 57.007 33.333 11.66 0.00 30.89 2.24
3116 3681 9.433153 CCCTAAGTTAGAGTTAGTTTTGGTTAG 57.567 37.037 11.66 0.00 30.89 2.34
3117 3682 9.158097 TCCCTAAGTTAGAGTTAGTTTTGGTTA 57.842 33.333 11.66 0.00 30.89 2.85
3118 3683 8.037723 TCCCTAAGTTAGAGTTAGTTTTGGTT 57.962 34.615 11.66 0.00 30.89 3.67
3119 3684 7.622502 TCCCTAAGTTAGAGTTAGTTTTGGT 57.377 36.000 11.66 0.00 30.89 3.67
3120 3685 7.769507 GGATCCCTAAGTTAGAGTTAGTTTTGG 59.230 40.741 11.66 0.38 30.89 3.28
3121 3686 8.319146 TGGATCCCTAAGTTAGAGTTAGTTTTG 58.681 37.037 9.90 0.00 30.89 2.44
3122 3687 8.445361 TGGATCCCTAAGTTAGAGTTAGTTTT 57.555 34.615 9.90 0.00 30.89 2.43
3123 3688 8.445361 TTGGATCCCTAAGTTAGAGTTAGTTT 57.555 34.615 9.90 0.00 30.89 2.66
3124 3689 8.319881 GTTTGGATCCCTAAGTTAGAGTTAGTT 58.680 37.037 9.90 0.00 30.89 2.24
3125 3690 7.849160 GTTTGGATCCCTAAGTTAGAGTTAGT 58.151 38.462 9.90 0.00 30.89 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.