Multiple sequence alignment - TraesCS2A01G270100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G270100 chr2A 100.000 3143 0 0 1 3143 437977764 437974622 0.000000e+00 5805.0
1 TraesCS2A01G270100 chr2D 92.589 2739 91 29 433 3143 330752822 330750168 0.000000e+00 3831.0
2 TraesCS2A01G270100 chr2D 94.737 399 3 1 34 432 330753277 330752897 3.470000e-169 604.0
3 TraesCS2A01G270100 chr2D 87.324 71 4 5 90 156 330753317 330753248 3.360000e-10 76.8
4 TraesCS2A01G270100 chr2B 91.463 1757 56 30 481 2198 399354997 399353296 0.000000e+00 2327.0
5 TraesCS2A01G270100 chr2B 92.727 550 28 6 2600 3143 399352842 399352299 0.000000e+00 784.0
6 TraesCS2A01G270100 chr2B 95.928 442 13 2 2166 2607 399353296 399352860 0.000000e+00 712.0
7 TraesCS2A01G270100 chr2B 92.718 412 4 4 34 432 399355501 399355103 3.520000e-159 571.0
8 TraesCS2A01G270100 chr2B 100.000 33 0 0 1 33 399355609 399355577 9.410000e-06 62.1
9 TraesCS2A01G270100 chr3D 83.810 210 31 2 2676 2884 615374346 615374553 2.470000e-46 196.0
10 TraesCS2A01G270100 chr1B 100.000 36 0 0 210 245 677125908 677125873 2.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G270100 chr2A 437974622 437977764 3142 True 5805.000000 5805 100.0000 1 3143 1 chr2A.!!$R1 3142
1 TraesCS2A01G270100 chr2D 330750168 330753317 3149 True 1503.933333 3831 91.5500 34 3143 3 chr2D.!!$R1 3109
2 TraesCS2A01G270100 chr2B 399352299 399355609 3310 True 891.220000 2327 94.5672 1 3143 5 chr2B.!!$R1 3142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 741 0.249073 CTCGGTTCCATCGGTAGCTG 60.249 60.0 0.00 0.0 0.0 4.24 F
1401 1581 0.184692 TCAAGGACATGGCCAACACA 59.815 50.0 22.78 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2152 0.107703 TCTGCCGCTCGATCCAATTT 60.108 50.0 0.00 0.00 0.0 1.82 R
2296 2544 0.747644 AATGAACGCGGCCATGATCA 60.748 50.0 12.47 4.98 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 358 1.190643 CCTCGCTTCTCCTTCTCCTT 58.809 55.000 0.00 0.00 0.00 3.36
283 359 1.136110 CCTCGCTTCTCCTTCTCCTTC 59.864 57.143 0.00 0.00 0.00 3.46
284 360 2.099405 CTCGCTTCTCCTTCTCCTTCT 58.901 52.381 0.00 0.00 0.00 2.85
285 361 2.096248 TCGCTTCTCCTTCTCCTTCTC 58.904 52.381 0.00 0.00 0.00 2.87
286 362 1.136110 CGCTTCTCCTTCTCCTTCTCC 59.864 57.143 0.00 0.00 0.00 3.71
287 363 2.466846 GCTTCTCCTTCTCCTTCTCCT 58.533 52.381 0.00 0.00 0.00 3.69
412 501 0.831307 GGGTGAGCGGGTTTCTAGAT 59.169 55.000 0.00 0.00 0.00 1.98
514 680 1.444895 CCTTGCATTTGCTGGCGAC 60.445 57.895 3.94 0.00 42.66 5.19
560 726 0.742990 TAACGGCAGCCATTTCTCGG 60.743 55.000 13.30 0.00 0.00 4.63
565 731 0.960364 GCAGCCATTTCTCGGTTCCA 60.960 55.000 0.00 0.00 0.00 3.53
566 732 1.755179 CAGCCATTTCTCGGTTCCAT 58.245 50.000 0.00 0.00 0.00 3.41
567 733 1.672881 CAGCCATTTCTCGGTTCCATC 59.327 52.381 0.00 0.00 0.00 3.51
568 734 0.657840 GCCATTTCTCGGTTCCATCG 59.342 55.000 0.00 0.00 0.00 3.84
569 735 1.299541 CCATTTCTCGGTTCCATCGG 58.700 55.000 0.00 0.00 0.00 4.18
570 736 1.406887 CCATTTCTCGGTTCCATCGGT 60.407 52.381 0.00 0.00 0.00 4.69
571 737 2.159014 CCATTTCTCGGTTCCATCGGTA 60.159 50.000 0.00 0.00 0.00 4.02
572 738 2.953466 TTTCTCGGTTCCATCGGTAG 57.047 50.000 0.00 0.00 0.00 3.18
573 739 0.458669 TTCTCGGTTCCATCGGTAGC 59.541 55.000 0.00 0.00 0.00 3.58
574 740 0.395311 TCTCGGTTCCATCGGTAGCT 60.395 55.000 0.00 0.00 0.00 3.32
575 741 0.249073 CTCGGTTCCATCGGTAGCTG 60.249 60.000 0.00 0.00 0.00 4.24
576 742 1.227263 CGGTTCCATCGGTAGCTGG 60.227 63.158 0.00 0.00 35.06 4.85
577 743 1.905512 GGTTCCATCGGTAGCTGGT 59.094 57.895 0.00 0.00 35.28 4.00
578 744 1.117150 GGTTCCATCGGTAGCTGGTA 58.883 55.000 0.00 0.00 35.28 3.25
579 745 1.202498 GGTTCCATCGGTAGCTGGTAC 60.202 57.143 8.46 8.46 35.28 3.34
611 777 5.133491 ACGGGGGTTCTAGATTAGTACTAGT 59.867 44.000 0.00 0.00 38.59 2.57
638 804 9.680315 AAATGGCAATGTTTTTCATGTATTTTG 57.320 25.926 0.00 0.00 36.81 2.44
697 863 5.705400 AGAAACCAGGAAAGGAAAGAATCA 58.295 37.500 0.00 0.00 0.00 2.57
713 879 2.764637 ATCACGGGTTGTTGGAGCCC 62.765 60.000 0.00 0.00 39.03 5.19
737 903 5.171337 CGCGCCATCAATCAAATACTTTAAC 59.829 40.000 0.00 0.00 0.00 2.01
851 1017 3.186409 ACAACACGATTGGATTCTTGACG 59.814 43.478 8.62 0.00 0.00 4.35
1245 1425 1.945354 GCCGGTCCATCTCTTCACGA 61.945 60.000 1.90 0.00 0.00 4.35
1264 1444 2.129555 AACAATGTCCGGCTCAGGCT 62.130 55.000 0.00 0.00 38.73 4.58
1301 1481 4.722700 GCCAGCCTCAAAGCCGGA 62.723 66.667 5.05 0.00 31.46 5.14
1365 1545 4.519437 CCTCATGCGCTCGCTGGA 62.519 66.667 9.73 11.13 42.51 3.86
1380 1560 2.435059 GGACCGCTGAGCAGTTCC 60.435 66.667 4.88 2.50 0.00 3.62
1391 1571 2.373169 TGAGCAGTTCCTTCAAGGACAT 59.627 45.455 5.30 0.00 45.78 3.06
1392 1572 2.746362 GAGCAGTTCCTTCAAGGACATG 59.254 50.000 5.30 9.16 45.78 3.21
1399 1579 1.619654 CTTCAAGGACATGGCCAACA 58.380 50.000 22.78 0.00 0.00 3.33
1401 1581 0.184692 TCAAGGACATGGCCAACACA 59.815 50.000 22.78 0.00 0.00 3.72
1402 1582 0.599558 CAAGGACATGGCCAACACAG 59.400 55.000 22.78 0.00 0.00 3.66
1403 1583 0.185901 AAGGACATGGCCAACACAGT 59.814 50.000 22.78 3.35 0.00 3.55
1404 1584 0.538057 AGGACATGGCCAACACAGTG 60.538 55.000 22.78 4.51 0.00 3.66
1405 1585 1.286880 GACATGGCCAACACAGTGC 59.713 57.895 10.96 0.00 0.00 4.40
1406 1586 2.146073 GACATGGCCAACACAGTGCC 62.146 60.000 10.96 0.00 45.56 5.01
1409 1589 3.982241 GGCCAACACAGTGCCAGC 61.982 66.667 0.00 0.30 44.70 4.85
1410 1590 3.982241 GCCAACACAGTGCCAGCC 61.982 66.667 0.00 0.00 0.00 4.85
1411 1591 2.203394 CCAACACAGTGCCAGCCT 60.203 61.111 0.00 0.00 0.00 4.58
1412 1592 2.263741 CCAACACAGTGCCAGCCTC 61.264 63.158 0.00 0.00 0.00 4.70
1413 1593 2.113986 AACACAGTGCCAGCCTCC 59.886 61.111 0.00 0.00 0.00 4.30
1414 1594 2.756042 AACACAGTGCCAGCCTCCA 61.756 57.895 0.00 0.00 0.00 3.86
1415 1595 2.113774 CACAGTGCCAGCCTCCAA 59.886 61.111 0.00 0.00 0.00 3.53
1416 1596 2.113986 ACAGTGCCAGCCTCCAAC 59.886 61.111 0.00 0.00 0.00 3.77
1417 1597 2.433446 CAGTGCCAGCCTCCAACT 59.567 61.111 0.00 0.00 0.00 3.16
1418 1598 1.673665 CAGTGCCAGCCTCCAACTC 60.674 63.158 0.00 0.00 0.00 3.01
1419 1599 2.743928 GTGCCAGCCTCCAACTCG 60.744 66.667 0.00 0.00 0.00 4.18
1420 1600 4.704833 TGCCAGCCTCCAACTCGC 62.705 66.667 0.00 0.00 0.00 5.03
1596 1788 2.314122 GCAAAGAAAAGAGAAGCAGCG 58.686 47.619 0.00 0.00 0.00 5.18
1611 1803 3.683937 GCGGCAAATGGTGGTGCT 61.684 61.111 0.00 0.00 40.70 4.40
1828 2026 2.049156 CTGCTTCACCTCGACGCA 60.049 61.111 0.00 0.00 45.84 5.24
1857 2055 2.941333 CCGCACACTCAGCAACAG 59.059 61.111 0.00 0.00 0.00 3.16
1977 2187 2.224018 GGCAGAGACAGAAGAGGCTATG 60.224 54.545 0.00 0.00 0.00 2.23
2034 2244 2.572340 TGGAGGAAGGATGATCCCAAA 58.428 47.619 8.08 0.00 37.19 3.28
2150 2364 3.840666 TCCTTCAAGGAGTAGTTGCTCAT 59.159 43.478 0.34 0.00 40.06 2.90
2242 2490 4.763279 TCCTCGAGTGTCAGTGTTTATACA 59.237 41.667 12.31 0.00 0.00 2.29
2259 2507 2.009681 ACAATGGTTTCCTTGGTCCC 57.990 50.000 0.00 0.00 0.00 4.46
2265 2513 2.514582 TGGTTTCCTTGGTCCCTTTGTA 59.485 45.455 0.00 0.00 0.00 2.41
2349 2597 1.588667 GTTGCTGTTGTTGGTGCGG 60.589 57.895 0.00 0.00 0.00 5.69
2350 2598 1.750780 TTGCTGTTGTTGGTGCGGA 60.751 52.632 0.00 0.00 0.00 5.54
2490 2738 2.358898 AGTGTGCAAACGAGCTCATTTT 59.641 40.909 15.40 9.43 39.77 1.82
2573 2827 1.892474 CGGCATTCAAAAGAAGGGGAA 59.108 47.619 0.00 0.00 0.00 3.97
2588 2842 0.338467 GGGAAGGGGTATTTTGGCCT 59.662 55.000 3.32 0.00 0.00 5.19
2830 3111 2.191128 GGTGAGGCCCAAGCATATAG 57.809 55.000 0.00 0.00 42.56 1.31
2843 3124 2.563179 AGCATATAGGTTCAGGGCTACG 59.437 50.000 0.00 0.00 0.00 3.51
2913 3194 2.660236 GTGATCGTGAAACACTACGTCC 59.340 50.000 0.00 0.00 40.87 4.79
2914 3195 1.909532 GATCGTGAAACACTACGTCCG 59.090 52.381 0.00 0.00 40.87 4.79
2933 3214 2.936498 CCGATCACATTTCCTACCACAC 59.064 50.000 0.00 0.00 0.00 3.82
2935 3216 1.803334 TCACATTTCCTACCACACGC 58.197 50.000 0.00 0.00 0.00 5.34
2936 3217 1.070914 TCACATTTCCTACCACACGCA 59.929 47.619 0.00 0.00 0.00 5.24
2937 3218 1.464608 CACATTTCCTACCACACGCAG 59.535 52.381 0.00 0.00 0.00 5.18
2939 3220 2.002586 CATTTCCTACCACACGCAGAG 58.997 52.381 0.00 0.00 0.00 3.35
2940 3221 1.045407 TTTCCTACCACACGCAGAGT 58.955 50.000 0.00 0.00 0.00 3.24
2960 3241 0.037790 ACTGAGAGCCGTTTGAGAGC 60.038 55.000 0.00 0.00 0.00 4.09
2970 3251 1.609061 CGTTTGAGAGCCATGGTCACT 60.609 52.381 14.67 9.58 31.89 3.41
2971 3252 1.808945 GTTTGAGAGCCATGGTCACTG 59.191 52.381 14.67 0.00 31.89 3.66
3004 3285 9.044150 CCACACATGTTAGATTTGTGAAATTTT 57.956 29.630 9.72 0.00 42.59 1.82
3006 3287 9.814899 ACACATGTTAGATTTGTGAAATTTTCA 57.185 25.926 7.74 7.74 42.59 2.69
3019 3300 5.233225 TGAAATTTTCACACTTGTGTTGCA 58.767 33.333 7.74 0.00 45.76 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 358 2.034878 CCACTAGCAGCATGTAGGAGA 58.965 52.381 0.00 0.00 39.31 3.71
283 359 1.759445 ACCACTAGCAGCATGTAGGAG 59.241 52.381 0.00 0.00 39.31 3.69
284 360 1.866015 ACCACTAGCAGCATGTAGGA 58.134 50.000 0.00 0.00 39.31 2.94
285 361 2.283298 CAACCACTAGCAGCATGTAGG 58.717 52.381 0.00 0.67 39.31 3.18
286 362 1.667724 GCAACCACTAGCAGCATGTAG 59.332 52.381 0.00 0.00 39.31 2.74
287 363 1.278985 AGCAACCACTAGCAGCATGTA 59.721 47.619 0.00 0.00 39.31 2.29
412 501 3.596214 GAAACCGAAGAATGCCTGTCTA 58.404 45.455 0.00 0.00 0.00 2.59
476 642 6.870439 GCAAGGAAGCTATCAAACAAGAAATT 59.130 34.615 0.00 0.00 0.00 1.82
514 680 7.529158 TGCCAATAATTATCATGAGCATAACG 58.471 34.615 0.09 0.00 0.00 3.18
568 734 0.748005 TCCGTACGGTACCAGCTACC 60.748 60.000 32.16 0.00 41.73 3.18
569 735 0.378610 GTCCGTACGGTACCAGCTAC 59.621 60.000 32.16 17.37 36.47 3.58
570 736 1.089481 CGTCCGTACGGTACCAGCTA 61.089 60.000 32.16 9.14 45.50 3.32
571 737 2.401766 CGTCCGTACGGTACCAGCT 61.402 63.158 32.16 0.00 45.50 4.24
572 738 2.100991 CGTCCGTACGGTACCAGC 59.899 66.667 32.16 15.51 45.50 4.85
638 804 2.827921 ACCAACATTTCAATCAGCCCTC 59.172 45.455 0.00 0.00 0.00 4.30
713 879 3.338818 AAGTATTTGATTGATGGCGCG 57.661 42.857 0.00 0.00 0.00 6.86
851 1017 8.699283 ATGAAGCTGAGAAAATAAGAAAATGC 57.301 30.769 0.00 0.00 0.00 3.56
934 1100 2.620112 CGGTGAGTTGGGCTTGCAG 61.620 63.158 0.00 0.00 0.00 4.41
960 1126 3.048475 AGCTGCGCTGCACAAGAG 61.048 61.111 35.70 12.17 37.57 2.85
1134 1305 1.227497 GAGCTTGCGATCTGGGGAG 60.227 63.158 0.00 0.00 0.00 4.30
1245 1425 1.675641 GCCTGAGCCGGACATTGTT 60.676 57.895 5.05 0.00 0.00 2.83
1301 1481 1.000283 CGGATTTCGCTCTAGCCAGAT 60.000 52.381 0.00 0.00 37.91 2.90
1380 1560 1.270550 GTGTTGGCCATGTCCTTGAAG 59.729 52.381 6.09 0.00 0.00 3.02
1399 1579 2.113986 GTTGGAGGCTGGCACTGT 59.886 61.111 3.38 0.00 0.00 3.55
1401 1581 2.753029 GAGTTGGAGGCTGGCACT 59.247 61.111 3.38 0.00 0.00 4.40
1402 1582 2.743928 CGAGTTGGAGGCTGGCAC 60.744 66.667 3.38 0.00 0.00 5.01
1403 1583 4.704833 GCGAGTTGGAGGCTGGCA 62.705 66.667 3.38 0.00 37.58 4.92
1405 1585 3.259633 AAGGCGAGTTGGAGGCTGG 62.260 63.158 0.00 0.00 42.68 4.85
1406 1586 1.743252 GAAGGCGAGTTGGAGGCTG 60.743 63.158 0.00 0.00 42.68 4.85
1407 1587 0.614979 TAGAAGGCGAGTTGGAGGCT 60.615 55.000 0.00 0.00 45.54 4.58
1408 1588 0.460459 GTAGAAGGCGAGTTGGAGGC 60.460 60.000 0.00 0.00 0.00 4.70
1409 1589 0.175989 GGTAGAAGGCGAGTTGGAGG 59.824 60.000 0.00 0.00 0.00 4.30
1410 1590 1.187087 AGGTAGAAGGCGAGTTGGAG 58.813 55.000 0.00 0.00 0.00 3.86
1411 1591 1.275291 CAAGGTAGAAGGCGAGTTGGA 59.725 52.381 0.00 0.00 0.00 3.53
1412 1592 1.726853 CAAGGTAGAAGGCGAGTTGG 58.273 55.000 0.00 0.00 0.00 3.77
1413 1593 1.079503 GCAAGGTAGAAGGCGAGTTG 58.920 55.000 0.00 0.00 0.00 3.16
1414 1594 0.977395 AGCAAGGTAGAAGGCGAGTT 59.023 50.000 0.00 0.00 0.00 3.01
1415 1595 0.247736 CAGCAAGGTAGAAGGCGAGT 59.752 55.000 0.00 0.00 0.00 4.18
1416 1596 0.532573 TCAGCAAGGTAGAAGGCGAG 59.467 55.000 0.00 0.00 0.00 5.03
1417 1597 0.973632 TTCAGCAAGGTAGAAGGCGA 59.026 50.000 0.00 0.00 0.00 5.54
1418 1598 1.066858 TCTTCAGCAAGGTAGAAGGCG 60.067 52.381 0.00 0.00 39.30 5.52
1419 1599 2.770164 TCTTCAGCAAGGTAGAAGGC 57.230 50.000 0.00 0.00 39.30 4.35
1420 1600 5.295540 GCTTATTCTTCAGCAAGGTAGAAGG 59.704 44.000 0.00 0.00 39.30 3.46
1480 1660 2.830370 GATGCTCGGCTTTGGGGG 60.830 66.667 0.00 0.00 0.00 5.40
1596 1788 0.109319 CGTTAGCACCACCATTTGCC 60.109 55.000 0.00 0.00 39.75 4.52
1611 1803 0.536233 TTGGCCTTGAGCTTGCGTTA 60.536 50.000 3.32 0.00 43.05 3.18
1619 1811 2.677875 CACCCCTTGGCCTTGAGC 60.678 66.667 3.32 0.00 42.60 4.26
1661 1853 1.623811 TCTCCTTCCTGGTTGTAGTGC 59.376 52.381 0.00 0.00 37.07 4.40
1857 2055 2.514458 TTTCCTCCTCATTCTTGCCC 57.486 50.000 0.00 0.00 0.00 5.36
1938 2148 2.143122 GCCGCTCGATCCAATTTATCA 58.857 47.619 0.00 0.00 0.00 2.15
1942 2152 0.107703 TCTGCCGCTCGATCCAATTT 60.108 50.000 0.00 0.00 0.00 1.82
1977 2187 2.684843 CCTGCTGCTTGCCTTCGTC 61.685 63.158 0.00 0.00 42.00 4.20
2082 2292 2.596851 GGCCTTCACCCTGCTCTGA 61.597 63.158 0.00 0.00 0.00 3.27
2150 2364 3.706373 GCAGAACTGGGCCGAGGA 61.706 66.667 19.90 0.00 0.00 3.71
2242 2490 2.972021 CAAAGGGACCAAGGAAACCATT 59.028 45.455 0.00 0.00 0.00 3.16
2296 2544 0.747644 AATGAACGCGGCCATGATCA 60.748 50.000 12.47 4.98 0.00 2.92
2301 2549 1.212490 CAACAATGAACGCGGCCAT 59.788 52.632 12.47 10.53 0.00 4.40
2302 2550 1.240641 ATCAACAATGAACGCGGCCA 61.241 50.000 12.47 8.27 39.49 5.36
2303 2551 0.798009 CATCAACAATGAACGCGGCC 60.798 55.000 12.47 1.30 39.49 6.13
2349 2597 4.925646 GCACCAAGGTTTCATTCAAATCTC 59.074 41.667 0.00 0.00 33.97 2.75
2350 2598 4.590222 AGCACCAAGGTTTCATTCAAATCT 59.410 37.500 0.00 0.00 36.98 2.40
2402 2650 3.196685 ACCTTTCAGAGAGTATGAGCACC 59.803 47.826 0.00 0.00 0.00 5.01
2490 2738 1.271934 CATTTGGTGACGCATTGGGAA 59.728 47.619 7.82 0.00 0.00 3.97
2573 2827 2.314549 TGAATGAGGCCAAAATACCCCT 59.685 45.455 5.01 0.00 0.00 4.79
2588 2842 5.940617 TCTCTGGTCCTTTCTTTTGAATGA 58.059 37.500 0.00 0.00 38.37 2.57
2646 2925 3.498777 TCTCTCGCTATCATACAGAACCG 59.501 47.826 0.00 0.00 0.00 4.44
2752 3033 7.153217 TGTCGTAGAGTGTCAATTATTGAGA 57.847 36.000 8.00 4.13 37.58 3.27
2830 3111 4.611961 GTTCCGTAGCCCTGAACC 57.388 61.111 0.00 0.00 33.85 3.62
2843 3124 2.176045 CCCCAGGTTATGTTTGGTTCC 58.824 52.381 0.00 0.00 0.00 3.62
2913 3194 2.603110 CGTGTGGTAGGAAATGTGATCG 59.397 50.000 0.00 0.00 0.00 3.69
2914 3195 2.351726 GCGTGTGGTAGGAAATGTGATC 59.648 50.000 0.00 0.00 0.00 2.92
2933 3214 1.063327 CGGCTCTCAGTACTCTGCG 59.937 63.158 0.00 0.00 41.10 5.18
2935 3216 2.229062 TCAAACGGCTCTCAGTACTCTG 59.771 50.000 0.00 0.00 42.54 3.35
2936 3217 2.490115 CTCAAACGGCTCTCAGTACTCT 59.510 50.000 0.00 0.00 0.00 3.24
2937 3218 2.488545 TCTCAAACGGCTCTCAGTACTC 59.511 50.000 0.00 0.00 0.00 2.59
2939 3220 2.869897 CTCTCAAACGGCTCTCAGTAC 58.130 52.381 0.00 0.00 0.00 2.73
2940 3221 1.202582 GCTCTCAAACGGCTCTCAGTA 59.797 52.381 0.00 0.00 0.00 2.74
2960 3241 1.381928 GGCATCAGCAGTGACCATGG 61.382 60.000 11.19 11.19 44.61 3.66
2970 3251 2.086094 CTAACATGTGTGGCATCAGCA 58.914 47.619 0.00 0.00 44.61 4.41
2971 3252 2.358957 TCTAACATGTGTGGCATCAGC 58.641 47.619 0.00 0.00 35.19 4.26
3019 3300 1.282738 TGCCATCAGTCATGACCATGT 59.717 47.619 22.21 0.34 38.57 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.