Multiple sequence alignment - TraesCS2A01G269500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G269500
chr2A
100.000
2764
0
0
1
2764
435577368
435580131
0.000000e+00
5105
1
TraesCS2A01G269500
chr2B
92.484
2661
186
11
1
2656
397918810
397921461
0.000000e+00
3794
2
TraesCS2A01G269500
chr2D
93.189
2496
132
18
272
2756
329147848
329150316
0.000000e+00
3633
3
TraesCS2A01G269500
chr2D
86.429
280
38
0
1
280
329139370
329139649
9.620000e-80
307
4
TraesCS2A01G269500
chr7D
84.348
345
46
7
187
528
538241312
538241651
5.710000e-87
331
5
TraesCS2A01G269500
chr1D
84.058
345
50
5
174
515
36531888
36532230
7.380000e-86
327
6
TraesCS2A01G269500
chr7B
86.689
293
36
3
189
479
205365469
205365760
3.430000e-84
322
7
TraesCS2A01G269500
chr4A
83.768
345
49
7
173
515
645306192
645306531
1.240000e-83
320
8
TraesCS2A01G269500
chr6B
83.099
355
50
9
166
515
656290735
656291084
5.750000e-82
315
9
TraesCS2A01G269500
chr5D
83.673
343
47
8
180
516
554573251
554572912
5.750000e-82
315
10
TraesCS2A01G269500
chr5D
82.849
344
49
9
174
513
355098219
355098556
1.610000e-77
300
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G269500
chr2A
435577368
435580131
2763
False
5105
5105
100.000
1
2764
1
chr2A.!!$F1
2763
1
TraesCS2A01G269500
chr2B
397918810
397921461
2651
False
3794
3794
92.484
1
2656
1
chr2B.!!$F1
2655
2
TraesCS2A01G269500
chr2D
329147848
329150316
2468
False
3633
3633
93.189
272
2756
1
chr2D.!!$F2
2484
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
247
248
0.109342
ACGGGATGATGGAAGATGGC
59.891
55.0
0.0
0.0
0.0
4.40
F
250
251
0.109342
GGATGATGGAAGATGGCGGT
59.891
55.0
0.0
0.0
0.0
5.68
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1283
1288
0.174389
CAGGTCCTCATCGGTCACAG
59.826
60.0
0.0
0.0
0.0
3.66
R
1826
1832
0.323542
ATGTCCTCTCCCTCGTCGTT
60.324
55.0
0.0
0.0
0.0
3.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
25
26
1.590591
TGGTGCTATGTGTGGGGTAT
58.409
50.000
0.00
0.00
0.00
2.73
37
38
4.042311
TGTGTGGGGTATGAGTTGTACAAT
59.958
41.667
12.26
0.85
0.00
2.71
39
40
5.007034
TGTGGGGTATGAGTTGTACAATTG
58.993
41.667
12.26
3.24
0.00
2.32
63
64
6.021596
GTGCAGTTTGTGTACATGTATTAGC
58.978
40.000
9.18
6.05
41.23
3.09
67
68
3.528597
TGTGTACATGTATTAGCCGCA
57.471
42.857
9.18
5.75
0.00
5.69
83
84
1.269726
CCGCATTGAGCAAAGGTTGTT
60.270
47.619
0.00
0.00
46.13
2.83
84
85
2.030363
CCGCATTGAGCAAAGGTTGTTA
60.030
45.455
0.00
0.00
46.13
2.41
95
96
7.831690
TGAGCAAAGGTTGTTATATACATGGAA
59.168
33.333
0.00
0.00
36.44
3.53
97
98
9.860650
AGCAAAGGTTGTTATATACATGGAATA
57.139
29.630
0.00
0.00
36.44
1.75
119
120
3.310501
ACAAGTTACAACACGCTTGTACC
59.689
43.478
6.95
0.60
46.39
3.34
127
128
0.537188
CACGCTTGTACCCTGATCCT
59.463
55.000
0.00
0.00
0.00
3.24
137
138
5.525484
TGTACCCTGATCCTTAGTGTGTAT
58.475
41.667
0.00
0.00
0.00
2.29
144
145
6.121776
TGATCCTTAGTGTGTATGTGGTTT
57.878
37.500
0.00
0.00
0.00
3.27
148
149
5.761234
TCCTTAGTGTGTATGTGGTTTTGAC
59.239
40.000
0.00
0.00
0.00
3.18
154
155
6.093771
AGTGTGTATGTGGTTTTGACGTTAAA
59.906
34.615
0.73
0.73
0.00
1.52
156
157
8.068977
GTGTGTATGTGGTTTTGACGTTAAATA
58.931
33.333
6.31
0.00
0.00
1.40
165
166
9.420551
TGGTTTTGACGTTAAATAACAACTTTT
57.579
25.926
6.31
0.00
35.99
2.27
183
184
1.295792
TTTGTGGCTTGACTGTCGAC
58.704
50.000
9.11
9.11
0.00
4.20
185
186
1.007734
GTGGCTTGACTGTCGACGA
60.008
57.895
11.62
0.00
0.00
4.20
199
200
1.732809
TCGACGACAGATGAGACTGAC
59.267
52.381
0.00
0.00
40.63
3.51
210
211
5.921976
CAGATGAGACTGACAAGATCTATGC
59.078
44.000
0.00
0.00
39.94
3.14
219
220
7.559486
ACTGACAAGATCTATGCAGTGATTTA
58.441
34.615
18.12
0.00
35.41
1.40
227
228
8.435187
AGATCTATGCAGTGATTTATCCTGAAA
58.565
33.333
0.00
0.00
31.15
2.69
229
230
8.213518
TCTATGCAGTGATTTATCCTGAAAAC
57.786
34.615
0.00
0.00
31.15
2.43
237
238
6.263168
GTGATTTATCCTGAAAACGGGATGAT
59.737
38.462
17.58
12.24
41.78
2.45
247
248
0.109342
ACGGGATGATGGAAGATGGC
59.891
55.000
0.00
0.00
0.00
4.40
250
251
0.109342
GGATGATGGAAGATGGCGGT
59.891
55.000
0.00
0.00
0.00
5.68
251
252
1.477558
GGATGATGGAAGATGGCGGTT
60.478
52.381
0.00
0.00
0.00
4.44
260
261
1.224592
GATGGCGGTTGTGGATCCT
59.775
57.895
14.23
0.00
0.00
3.24
266
267
1.685224
GGTTGTGGATCCTGGAGCA
59.315
57.895
14.71
1.84
0.00
4.26
270
271
1.225426
GTGGATCCTGGAGCATGCA
59.775
57.895
21.98
0.00
33.07
3.96
302
303
2.770447
TGTTATGGGATGCCTAGACCA
58.230
47.619
4.35
0.00
37.41
4.02
321
322
2.771943
CCAGATGGTCTTAAGGCCACTA
59.228
50.000
30.58
9.15
37.62
2.74
342
343
9.254133
CCACTAGATTAGATTGTGTCTGTTATG
57.746
37.037
0.00
0.00
37.83
1.90
345
346
6.573434
AGATTAGATTGTGTCTGTTATGCGA
58.427
36.000
0.00
0.00
37.83
5.10
349
350
4.389992
AGATTGTGTCTGTTATGCGAACAG
59.610
41.667
20.07
20.07
46.67
3.16
359
360
0.541392
ATGCGAACAGGGCACATCTA
59.459
50.000
0.00
0.00
44.23
1.98
385
386
4.134563
ACTTGTAGGTGTAGCAACTTTGG
58.865
43.478
0.00
0.00
31.86
3.28
398
399
4.644685
AGCAACTTTGGTTTGCTTAGAAGA
59.355
37.500
3.75
0.00
36.88
2.87
408
409
3.719268
TGCTTAGAAGATGGCTTTGGA
57.281
42.857
0.00
0.00
33.61
3.53
432
434
9.342308
GGATTGATCCTTGTATTATTTGTCAGA
57.658
33.333
2.72
0.00
43.73
3.27
498
500
2.076803
GGAGGCCGGGGTAATCCTT
61.077
63.158
2.18
0.00
35.33
3.36
500
502
2.053259
GAGGCCGGGGTAATCCTTCC
62.053
65.000
2.18
0.00
35.33
3.46
502
504
1.642513
GGCCGGGGTAATCCTTCCTT
61.643
60.000
2.18
0.00
35.33
3.36
509
511
4.533815
GGGGTAATCCTTCCTTTCGAAAT
58.466
43.478
11.70
0.00
35.33
2.17
510
512
5.685599
CGGGGTAATCCTTCCTTTCGAAATA
60.686
44.000
11.70
0.00
35.33
1.40
515
517
9.569167
GGTAATCCTTCCTTTCGAAATAAAAAG
57.431
33.333
11.70
11.66
33.26
2.27
519
521
9.860898
ATCCTTCCTTTCGAAATAAAAAGAATG
57.139
29.630
11.70
5.72
35.02
2.67
577
582
3.270027
TGAGTTAGATTTCACCCATGCG
58.730
45.455
0.00
0.00
0.00
4.73
587
592
0.248661
CACCCATGCGTACTCGAGAG
60.249
60.000
21.68
11.01
39.71
3.20
660
665
2.895404
ACCTGTAAGTAGTCAAGCCGAA
59.105
45.455
0.00
0.00
0.00
4.30
683
688
0.391597
CGCGGGTGTCCTATGGTTAT
59.608
55.000
0.00
0.00
0.00
1.89
928
933
1.490490
CATCCATTCGGAGGAGGGAAA
59.510
52.381
0.00
0.00
46.44
3.13
967
972
2.095853
CCATTCGATAGCCAACACACAC
59.904
50.000
0.00
0.00
0.00
3.82
972
977
3.194755
TCGATAGCCAACACACACTACAT
59.805
43.478
0.00
0.00
0.00
2.29
1016
1021
1.368209
CAATGGCCAACAGCTGCAA
59.632
52.632
10.96
0.00
43.05
4.08
1293
1298
2.809601
GCGAACGCTGTGACCGAT
60.810
61.111
11.97
0.00
38.26
4.18
1401
1406
2.618045
CCCTGCCCTCGACTTGTATTTT
60.618
50.000
0.00
0.00
0.00
1.82
1584
1589
0.877071
GTCCAGGTCAGTAACGTCGA
59.123
55.000
0.00
0.00
0.00
4.20
1634
1640
7.967908
AGTATAGATTCCGAAAGAACCATCAT
58.032
34.615
0.00
0.00
37.29
2.45
1668
1674
1.129917
TGGTCGGTTGTTTGGTCCTA
58.870
50.000
0.00
0.00
0.00
2.94
1682
1688
1.415659
GGTCCTATGACTCATGCAGCT
59.584
52.381
1.42
0.00
41.47
4.24
1760
1766
1.486310
TGTTCAGTGAAGCACTCCAGT
59.514
47.619
5.62
0.00
43.43
4.00
1769
1775
1.005630
GCACTCCAGTTGAGAGCGT
60.006
57.895
0.00
0.00
45.60
5.07
1794
1800
1.638070
TGCAATGAACCACCCATCCTA
59.362
47.619
0.00
0.00
0.00
2.94
1797
1803
3.696045
CAATGAACCACCCATCCTACAA
58.304
45.455
0.00
0.00
0.00
2.41
1826
1832
5.408880
TGTACATCCGAGTGTTCCATTAA
57.591
39.130
0.00
0.00
33.62
1.40
1849
1855
0.333312
ACGAGGGAGAGGACATGACT
59.667
55.000
0.00
0.00
0.00
3.41
1889
1896
2.102588
ACGTCTAACCTTGTTGCTCTGT
59.897
45.455
0.00
0.00
0.00
3.41
1890
1897
3.319972
ACGTCTAACCTTGTTGCTCTGTA
59.680
43.478
0.00
0.00
0.00
2.74
1958
1965
0.324275
AACATTAATGCACCGCCCCT
60.324
50.000
15.48
0.00
0.00
4.79
2039
2046
8.500753
TTAGAAACACTAACTCTTGCTGAAAA
57.499
30.769
0.00
0.00
36.33
2.29
2168
2177
4.601857
AGATTGTAGGGGAGAAAAGTTGGA
59.398
41.667
0.00
0.00
0.00
3.53
2210
2219
5.059161
TGAATCAGAGATTTTAGATGGGCG
58.941
41.667
0.00
0.00
0.00
6.13
2250
2259
7.002250
TGAATGTCTGAAATTAAATTGGGCA
57.998
32.000
0.00
0.00
0.00
5.36
2256
2265
4.764172
TGAAATTAAATTGGGCATTCCGG
58.236
39.130
0.00
0.00
38.76
5.14
2399
2408
2.351418
TGATTGGACTTAGCGCAAATCG
59.649
45.455
11.47
0.00
42.12
3.34
2415
2424
5.616204
CGCAAATCGCTCATGTGAATATCAT
60.616
40.000
0.00
0.00
39.08
2.45
2450
2459
4.100653
TGGATTCTCAAGCCTCAGATACAG
59.899
45.833
0.00
0.00
37.96
2.74
2452
2461
4.727507
TTCTCAAGCCTCAGATACAGAC
57.272
45.455
0.00
0.00
0.00
3.51
2453
2462
3.701664
TCTCAAGCCTCAGATACAGACA
58.298
45.455
0.00
0.00
0.00
3.41
2461
2471
4.626042
CCTCAGATACAGACATGGCTTAC
58.374
47.826
0.00
0.00
0.00
2.34
2477
2487
2.879756
GCTTACTGGGCATCTCCAAACA
60.880
50.000
0.00
0.00
36.21
2.83
2498
2508
5.113383
ACATTGACGTTAAACAGACACTCA
58.887
37.500
0.00
0.00
0.00
3.41
2527
2537
0.535335
GTGGACATCTAACCTGGCGA
59.465
55.000
0.00
0.00
0.00
5.54
2565
2575
7.447238
CACTATCCTTTGAACCTTTTCCAGTTA
59.553
37.037
0.00
0.00
0.00
2.24
2571
2581
7.604545
CCTTTGAACCTTTTCCAGTTAAAACAA
59.395
33.333
0.00
0.00
0.00
2.83
2572
2582
8.904099
TTTGAACCTTTTCCAGTTAAAACAAA
57.096
26.923
0.00
0.00
0.00
2.83
2681
2691
8.823220
ATTAAACTAAACTAATGCTGGATGGT
57.177
30.769
0.00
0.00
0.00
3.55
2691
2701
4.630644
ATGCTGGATGGTAACCTCATAG
57.369
45.455
0.00
0.00
32.06
2.23
2694
2704
1.691976
TGGATGGTAACCTCATAGGCG
59.308
52.381
0.00
0.00
39.63
5.52
2698
2708
0.828677
GGTAACCTCATAGGCGTGGT
59.171
55.000
0.00
0.00
39.63
4.16
2699
2709
1.208776
GGTAACCTCATAGGCGTGGTT
59.791
52.381
4.55
4.55
44.03
3.67
2716
2726
0.108281
GTTTCCGAGGCCACTAGGAC
60.108
60.000
5.01
0.00
46.46
3.85
2727
2737
1.202463
CCACTAGGACTGCAATCCTCG
60.202
57.143
22.15
17.45
46.92
4.63
2730
2740
1.751351
CTAGGACTGCAATCCTCGTCA
59.249
52.381
22.15
1.51
46.92
4.35
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
2
3
2.297701
CCCCACACATAGCACCATAAC
58.702
52.381
0.00
0.00
0.00
1.89
7
8
1.488812
TCATACCCCACACATAGCACC
59.511
52.381
0.00
0.00
0.00
5.01
15
16
3.688694
TGTACAACTCATACCCCACAC
57.311
47.619
0.00
0.00
0.00
3.82
25
26
5.105957
ACAAACTGCACAATTGTACAACTCA
60.106
36.000
11.22
3.99
35.63
3.41
37
38
6.384258
AATACATGTACACAAACTGCACAA
57.616
33.333
7.96
0.00
0.00
3.33
39
40
6.021596
GCTAATACATGTACACAAACTGCAC
58.978
40.000
7.96
0.00
0.00
4.57
59
60
0.810648
CCTTTGCTCAATGCGGCTAA
59.189
50.000
0.00
0.00
46.63
3.09
63
64
0.314935
ACAACCTTTGCTCAATGCGG
59.685
50.000
0.00
0.00
46.63
5.69
67
68
8.632679
CCATGTATATAACAACCTTTGCTCAAT
58.367
33.333
0.00
0.00
42.70
2.57
101
102
2.222445
CAGGGTACAAGCGTGTTGTAAC
59.778
50.000
11.38
15.58
40.78
2.50
107
108
0.249398
GGATCAGGGTACAAGCGTGT
59.751
55.000
10.83
10.83
42.09
4.49
108
109
0.537188
AGGATCAGGGTACAAGCGTG
59.463
55.000
0.00
0.00
33.30
5.34
109
110
1.276622
AAGGATCAGGGTACAAGCGT
58.723
50.000
0.00
0.00
0.00
5.07
116
117
5.362717
CACATACACACTAAGGATCAGGGTA
59.637
44.000
0.00
0.00
0.00
3.69
119
120
4.162320
ACCACATACACACTAAGGATCAGG
59.838
45.833
0.00
0.00
0.00
3.86
127
128
5.117584
ACGTCAAAACCACATACACACTAA
58.882
37.500
0.00
0.00
0.00
2.24
137
138
7.536855
AGTTGTTATTTAACGTCAAAACCACA
58.463
30.769
0.00
0.00
39.00
4.17
144
145
8.861101
CCACAAAAAGTTGTTATTTAACGTCAA
58.139
29.630
0.00
0.00
46.01
3.18
148
149
7.458038
AGCCACAAAAAGTTGTTATTTAACG
57.542
32.000
0.00
0.00
46.01
3.18
154
155
6.042143
CAGTCAAGCCACAAAAAGTTGTTAT
58.958
36.000
0.00
0.00
46.01
1.89
156
157
4.244862
CAGTCAAGCCACAAAAAGTTGTT
58.755
39.130
0.00
0.00
46.01
2.83
165
166
0.874175
CGTCGACAGTCAAGCCACAA
60.874
55.000
17.16
0.00
0.00
3.33
168
169
1.007734
GTCGTCGACAGTCAAGCCA
60.008
57.895
20.28
0.00
32.09
4.75
169
170
1.007734
TGTCGTCGACAGTCAAGCC
60.008
57.895
23.70
0.00
37.67
4.35
183
184
3.839051
TCTTGTCAGTCTCATCTGTCG
57.161
47.619
0.00
0.00
36.85
4.35
185
186
6.461370
GCATAGATCTTGTCAGTCTCATCTGT
60.461
42.308
0.00
0.00
36.85
3.41
192
193
4.708909
TCACTGCATAGATCTTGTCAGTCT
59.291
41.667
15.92
0.00
32.76
3.24
199
200
7.876582
TCAGGATAAATCACTGCATAGATCTTG
59.123
37.037
0.00
0.32
32.42
3.02
210
211
4.941263
TCCCGTTTTCAGGATAAATCACTG
59.059
41.667
0.00
0.00
0.00
3.66
219
220
2.509548
TCCATCATCCCGTTTTCAGGAT
59.490
45.455
0.00
0.00
43.89
3.24
227
228
1.477558
GCCATCTTCCATCATCCCGTT
60.478
52.381
0.00
0.00
0.00
4.44
229
230
0.952497
CGCCATCTTCCATCATCCCG
60.952
60.000
0.00
0.00
0.00
5.14
237
238
1.303236
CCACAACCGCCATCTTCCA
60.303
57.895
0.00
0.00
0.00
3.53
247
248
1.450312
GCTCCAGGATCCACAACCG
60.450
63.158
15.82
0.00
0.00
4.44
250
251
0.394762
GCATGCTCCAGGATCCACAA
60.395
55.000
15.82
0.00
0.00
3.33
251
252
1.225426
GCATGCTCCAGGATCCACA
59.775
57.895
15.82
4.22
0.00
4.17
260
261
2.111669
CCGCCTATGCATGCTCCA
59.888
61.111
20.33
0.00
37.32
3.86
270
271
1.545428
CCCATAACATGCACCGCCTAT
60.545
52.381
0.00
0.00
0.00
2.57
282
283
2.705658
CTGGTCTAGGCATCCCATAACA
59.294
50.000
0.00
0.00
0.00
2.41
302
303
3.995636
TCTAGTGGCCTTAAGACCATCT
58.004
45.455
14.10
14.11
38.46
2.90
321
322
6.573434
TCGCATAACAGACACAATCTAATCT
58.427
36.000
0.00
0.00
35.15
2.40
342
343
2.526304
TATAGATGTGCCCTGTTCGC
57.474
50.000
0.00
0.00
0.00
4.70
345
346
6.500589
ACAAGTATATAGATGTGCCCTGTT
57.499
37.500
0.66
0.00
0.00
3.16
349
350
6.014499
ACACCTACAAGTATATAGATGTGCCC
60.014
42.308
9.55
0.00
0.00
5.36
359
360
7.769044
CCAAAGTTGCTACACCTACAAGTATAT
59.231
37.037
0.13
0.00
0.00
0.86
385
386
4.218417
TCCAAAGCCATCTTCTAAGCAAAC
59.782
41.667
0.00
0.00
0.00
2.93
408
409
9.911788
AGTCTGACAAATAATACAAGGATCAAT
57.088
29.630
10.88
0.00
0.00
2.57
515
517
8.519526
TGTGTGTATGGGTAAGAAAAATCATTC
58.480
33.333
0.00
0.00
0.00
2.67
518
520
7.001674
AGTGTGTGTATGGGTAAGAAAAATCA
58.998
34.615
0.00
0.00
0.00
2.57
519
521
7.448748
AGTGTGTGTATGGGTAAGAAAAATC
57.551
36.000
0.00
0.00
0.00
2.17
558
563
3.350219
ACGCATGGGTGAAATCTAACT
57.650
42.857
15.49
0.00
0.00
2.24
577
582
9.018716
GCTATTTTAAGGTTTACTCTCGAGTAC
57.981
37.037
13.13
4.37
43.02
2.73
587
592
8.678593
AGGATGCTAGCTATTTTAAGGTTTAC
57.321
34.615
17.23
0.00
0.00
2.01
660
665
3.161450
ATAGGACACCCGCGCCAT
61.161
61.111
0.00
0.00
37.58
4.40
665
670
2.632987
AATAACCATAGGACACCCGC
57.367
50.000
0.00
0.00
37.58
6.13
683
688
1.468985
CCATGCCGGATGGTTGTTAA
58.531
50.000
19.26
0.00
46.20
2.01
946
951
2.095853
GTGTGTGTTGGCTATCGAATGG
59.904
50.000
0.00
0.00
0.00
3.16
967
972
6.455646
GCAATGGTTTCTCTGTAACGATGTAG
60.456
42.308
0.00
0.00
0.00
2.74
972
977
3.496884
GTGCAATGGTTTCTCTGTAACGA
59.503
43.478
0.00
0.00
0.00
3.85
1016
1021
4.012895
CGCCGCGCTTGTGTTCTT
62.013
61.111
5.56
0.00
0.00
2.52
1231
1236
2.431260
GCGGTCGGCTTCGTACAA
60.431
61.111
0.00
0.00
39.11
2.41
1283
1288
0.174389
CAGGTCCTCATCGGTCACAG
59.826
60.000
0.00
0.00
0.00
3.66
1293
1298
2.907703
GAGCTCATCCAGGTCCTCA
58.092
57.895
9.40
0.00
42.98
3.86
1393
1398
2.690173
CGGTTGACGGCAAAATACAA
57.310
45.000
4.55
0.00
39.42
2.41
1419
1424
2.656651
CGCATCTTCGGCTCGGAG
60.657
66.667
0.00
0.00
33.10
4.63
1584
1589
7.342769
AGGAAGAAATTAACAAGGAAACGTT
57.657
32.000
0.00
0.00
0.00
3.99
1634
1640
7.332557
ACAACCGACCACATAATAACATAAGA
58.667
34.615
0.00
0.00
0.00
2.10
1668
1674
1.818363
CGCCAGCTGCATGAGTCAT
60.818
57.895
8.66
0.00
41.33
3.06
1682
1688
1.476845
TAAGCTGTGGGTTCTCGCCA
61.477
55.000
0.00
0.00
34.76
5.69
1760
1766
0.890542
ATTGCAGCCAACGCTCTCAA
60.891
50.000
0.00
0.00
43.95
3.02
1769
1775
1.470996
GGGTGGTTCATTGCAGCCAA
61.471
55.000
0.00
0.00
35.49
4.52
1794
1800
2.803956
CTCGGATGTACAACGGTTTTGT
59.196
45.455
19.10
0.00
36.49
2.83
1797
1803
2.224113
ACACTCGGATGTACAACGGTTT
60.224
45.455
19.10
9.35
0.00
3.27
1826
1832
0.323542
ATGTCCTCTCCCTCGTCGTT
60.324
55.000
0.00
0.00
0.00
3.85
1849
1855
2.223595
CGTTGTGTTAATTGCACCACCA
60.224
45.455
10.96
0.00
36.11
4.17
1889
1896
0.398696
ACAACAACCATGGGCGTCTA
59.601
50.000
18.09
0.00
0.00
2.59
1890
1897
1.150536
ACAACAACCATGGGCGTCT
59.849
52.632
18.09
1.24
0.00
4.18
1958
1965
6.951062
TCAAATGTTGTCCTGTCAATACAA
57.049
33.333
0.00
0.00
34.49
2.41
2039
2046
6.818142
GTGCATGCCTAGTTTTTATGGAAATT
59.182
34.615
16.68
0.00
0.00
1.82
2079
2087
4.304110
TGGATGAGTGTGTTTTAGTCGAC
58.696
43.478
7.70
7.70
0.00
4.20
2210
2219
9.366216
TCAGACATTCAGTGTTGTATTACATAC
57.634
33.333
0.00
1.10
42.36
2.39
2250
2259
2.968675
GTGCAAGTACTGTACCGGAAT
58.031
47.619
9.46
0.00
34.78
3.01
2256
2265
3.256136
AGTCAGAGGTGCAAGTACTGTAC
59.744
47.826
9.93
9.93
39.75
2.90
2310
2319
4.451096
GTGTCGTGGACAAGTAATTCACAT
59.549
41.667
0.00
0.00
44.49
3.21
2415
2424
8.497745
AGGCTTGAGAATCCATAGAAGAAATTA
58.502
33.333
0.00
0.00
0.00
1.40
2450
2459
1.133976
AGATGCCCAGTAAGCCATGTC
60.134
52.381
0.00
0.00
0.00
3.06
2452
2461
1.602311
GAGATGCCCAGTAAGCCATG
58.398
55.000
0.00
0.00
0.00
3.66
2453
2462
0.475906
GGAGATGCCCAGTAAGCCAT
59.524
55.000
0.00
0.00
0.00
4.40
2461
2471
2.165030
GTCAATGTTTGGAGATGCCCAG
59.835
50.000
0.00
0.00
37.53
4.45
2477
2487
5.113383
TGTGAGTGTCTGTTTAACGTCAAT
58.887
37.500
0.00
0.00
0.00
2.57
2518
2528
0.179004
TTGATGGTGTTCGCCAGGTT
60.179
50.000
10.79
0.00
42.47
3.50
2522
2532
0.665835
GTGTTTGATGGTGTTCGCCA
59.334
50.000
7.56
7.56
43.48
5.69
2527
2537
6.068010
TCAAAGGATAGTGTTTGATGGTGTT
58.932
36.000
0.00
0.00
37.67
3.32
2681
2691
2.093341
GGAAACCACGCCTATGAGGTTA
60.093
50.000
0.00
0.00
43.17
2.85
2698
2708
0.252103
AGTCCTAGTGGCCTCGGAAA
60.252
55.000
3.32
0.00
34.57
3.13
2699
2709
0.970937
CAGTCCTAGTGGCCTCGGAA
60.971
60.000
3.32
0.00
34.57
4.30
2716
2726
2.363807
GTCGTGACGAGGATTGCAG
58.636
57.895
8.41
0.00
36.23
4.41
2727
2737
2.027625
CTTCCCCAAGCGTCGTGAC
61.028
63.158
0.00
0.00
0.00
3.67
2730
2740
2.342648
GACTTCCCCAAGCGTCGT
59.657
61.111
0.00
0.00
32.09
4.34
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.