Multiple sequence alignment - TraesCS2A01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G268900 chr2A 100.000 2339 0 0 1 2339 433378086 433375748 0.000000e+00 4320
1 TraesCS2A01G268900 chr2A 99.534 644 3 0 1696 2339 466229668 466230311 0.000000e+00 1173
2 TraesCS2A01G268900 chr4B 94.428 1364 72 3 1 1360 182287754 182286391 0.000000e+00 2095
3 TraesCS2A01G268900 chr3B 94.195 1361 74 5 1 1359 418735716 418734359 0.000000e+00 2071
4 TraesCS2A01G268900 chr3B 94.066 1365 76 4 1 1360 670760962 670759598 0.000000e+00 2067
5 TraesCS2A01G268900 chr3B 99.375 640 4 0 1700 2339 545782138 545781499 0.000000e+00 1160
6 TraesCS2A01G268900 chr3B 98.769 650 7 1 1691 2339 795008411 795009060 0.000000e+00 1155
7 TraesCS2A01G268900 chr1B 94.006 1368 79 3 1 1365 611789584 611790951 0.000000e+00 2069
8 TraesCS2A01G268900 chr1B 76.627 338 73 6 1362 1697 669218073 669218406 5.130000e-42 182
9 TraesCS2A01G268900 chr6A 94.062 1364 75 4 2 1360 371337479 371338841 0.000000e+00 2065
10 TraesCS2A01G268900 chr6A 76.232 345 69 12 1362 1700 117345716 117345379 1.110000e-38 171
11 TraesCS2A01G268900 chr4D 93.407 1365 82 8 1 1360 127148113 127149474 0.000000e+00 2015
12 TraesCS2A01G268900 chr4D 82.877 146 22 3 1362 1505 88051405 88051549 6.780000e-26 128
13 TraesCS2A01G268900 chr2D 93.338 1366 84 7 1 1360 273017907 273019271 0.000000e+00 2012
14 TraesCS2A01G268900 chr2D 88.791 339 25 5 1362 1700 327850434 327850109 1.010000e-108 403
15 TraesCS2A01G268900 chr2D 75.710 317 72 5 1362 1676 420980775 420981088 1.120000e-33 154
16 TraesCS2A01G268900 chr2D 75.478 314 70 6 1362 1673 518617697 518617389 1.870000e-31 147
17 TraesCS2A01G268900 chr7D 93.114 1365 88 5 1 1360 149106982 149105619 0.000000e+00 1995
18 TraesCS2A01G268900 chr7D 93.114 1365 87 7 1 1360 232924943 232926305 0.000000e+00 1993
19 TraesCS2A01G268900 chr2B 99.531 640 3 0 1700 2339 505168009 505167370 0.000000e+00 1166
20 TraesCS2A01G268900 chr5A 99.378 643 3 1 1698 2339 246596183 246595541 0.000000e+00 1164
21 TraesCS2A01G268900 chr6B 98.925 651 4 2 1692 2339 390293231 390293881 0.000000e+00 1160
22 TraesCS2A01G268900 chr6B 98.624 654 6 3 1688 2339 520623401 520622749 0.000000e+00 1155
23 TraesCS2A01G268900 chr6B 80.534 262 50 1 1437 1698 73158360 73158100 1.420000e-47 200
24 TraesCS2A01G268900 chr5B 99.224 644 4 1 1697 2339 132997694 132997051 0.000000e+00 1160
25 TraesCS2A01G268900 chr5B 74.783 345 77 9 1362 1700 497008578 497008238 1.870000e-31 147
26 TraesCS2A01G268900 chr5B 87.387 111 13 1 1362 1472 580756476 580756585 2.440000e-25 126
27 TraesCS2A01G268900 chr4A 97.181 674 15 4 1668 2339 394488744 394489415 0.000000e+00 1136
28 TraesCS2A01G268900 chr6D 80.237 253 48 2 1437 1688 35487025 35486774 3.070000e-44 189
29 TraesCS2A01G268900 chr7B 81.818 165 28 2 1422 1586 333294156 333294318 1.130000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G268900 chr2A 433375748 433378086 2338 True 4320 4320 100.000 1 2339 1 chr2A.!!$R1 2338
1 TraesCS2A01G268900 chr2A 466229668 466230311 643 False 1173 1173 99.534 1696 2339 1 chr2A.!!$F1 643
2 TraesCS2A01G268900 chr4B 182286391 182287754 1363 True 2095 2095 94.428 1 1360 1 chr4B.!!$R1 1359
3 TraesCS2A01G268900 chr3B 418734359 418735716 1357 True 2071 2071 94.195 1 1359 1 chr3B.!!$R1 1358
4 TraesCS2A01G268900 chr3B 670759598 670760962 1364 True 2067 2067 94.066 1 1360 1 chr3B.!!$R3 1359
5 TraesCS2A01G268900 chr3B 545781499 545782138 639 True 1160 1160 99.375 1700 2339 1 chr3B.!!$R2 639
6 TraesCS2A01G268900 chr3B 795008411 795009060 649 False 1155 1155 98.769 1691 2339 1 chr3B.!!$F1 648
7 TraesCS2A01G268900 chr1B 611789584 611790951 1367 False 2069 2069 94.006 1 1365 1 chr1B.!!$F1 1364
8 TraesCS2A01G268900 chr6A 371337479 371338841 1362 False 2065 2065 94.062 2 1360 1 chr6A.!!$F1 1358
9 TraesCS2A01G268900 chr4D 127148113 127149474 1361 False 2015 2015 93.407 1 1360 1 chr4D.!!$F2 1359
10 TraesCS2A01G268900 chr2D 273017907 273019271 1364 False 2012 2012 93.338 1 1360 1 chr2D.!!$F1 1359
11 TraesCS2A01G268900 chr7D 149105619 149106982 1363 True 1995 1995 93.114 1 1360 1 chr7D.!!$R1 1359
12 TraesCS2A01G268900 chr7D 232924943 232926305 1362 False 1993 1993 93.114 1 1360 1 chr7D.!!$F1 1359
13 TraesCS2A01G268900 chr2B 505167370 505168009 639 True 1166 1166 99.531 1700 2339 1 chr2B.!!$R1 639
14 TraesCS2A01G268900 chr5A 246595541 246596183 642 True 1164 1164 99.378 1698 2339 1 chr5A.!!$R1 641
15 TraesCS2A01G268900 chr6B 390293231 390293881 650 False 1160 1160 98.925 1692 2339 1 chr6B.!!$F1 647
16 TraesCS2A01G268900 chr6B 520622749 520623401 652 True 1155 1155 98.624 1688 2339 1 chr6B.!!$R2 651
17 TraesCS2A01G268900 chr5B 132997051 132997694 643 True 1160 1160 99.224 1697 2339 1 chr5B.!!$R1 642
18 TraesCS2A01G268900 chr4A 394488744 394489415 671 False 1136 1136 97.181 1668 2339 1 chr4A.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 939 1.760875 GCTGGAGGGTACGATGGGA 60.761 63.158 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 1978 0.253044 TGCTACAGCCTGGATTCACC 59.747 55.0 0.0 0.0 41.18 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 328 7.961326 ATCAGTATGGGAGCAAACTAAAATT 57.039 32.000 0.00 0.00 36.16 1.82
396 405 6.360370 AGTTATCTTGTCTGGCTAAAGTCA 57.640 37.500 0.00 0.00 0.00 3.41
488 500 2.670148 CGCCCTCTTGCCCTACCTT 61.670 63.158 0.00 0.00 0.00 3.50
496 508 2.183679 CTTGCCCTACCTTCTCTCAGT 58.816 52.381 0.00 0.00 0.00 3.41
580 592 8.463055 AAGGCTAGGGTTGGATATGATTATTA 57.537 34.615 0.00 0.00 0.00 0.98
610 622 2.028203 TGTGAGATTGATCGTGCTGGAA 60.028 45.455 0.00 0.00 0.00 3.53
758 770 5.304101 TGCACCAGGAATTAACTCAAAATGT 59.696 36.000 0.00 0.00 0.00 2.71
879 893 4.702131 CCTAGGGGATTTGTGAAACTCAAG 59.298 45.833 0.00 0.00 33.52 3.02
924 939 1.760875 GCTGGAGGGTACGATGGGA 60.761 63.158 0.00 0.00 0.00 4.37
945 960 4.101942 GAGCAGTATTGAGAGACGACAAG 58.898 47.826 0.00 0.00 0.00 3.16
1091 1106 2.027745 TCAACTCTGACAATCTGGAGGC 60.028 50.000 0.00 0.00 0.00 4.70
1153 1168 1.643832 GCGGCAATCTTCGATGACC 59.356 57.895 2.72 0.11 0.00 4.02
1185 1200 7.859377 CACTATGCTTGTGATTTTATCATGACC 59.141 37.037 0.00 0.00 42.04 4.02
1200 1215 4.484236 TCATGACCAAATTCGAACATTGC 58.516 39.130 16.30 7.65 0.00 3.56
1210 1225 7.414429 CCAAATTCGAACATTGCAATAGAGAGA 60.414 37.037 12.53 5.73 0.00 3.10
1214 1229 6.266323 TCGAACATTGCAATAGAGAGACTAC 58.734 40.000 12.53 0.00 33.62 2.73
1373 1389 8.877864 TTAATTCAAAAATAGAGGAGAAGCCA 57.122 30.769 0.00 0.00 40.02 4.75
1374 1390 7.781324 AATTCAAAAATAGAGGAGAAGCCAA 57.219 32.000 0.00 0.00 40.02 4.52
1375 1391 6.575162 TTCAAAAATAGAGGAGAAGCCAAC 57.425 37.500 0.00 0.00 40.02 3.77
1376 1392 5.010282 TCAAAAATAGAGGAGAAGCCAACC 58.990 41.667 0.00 0.00 40.02 3.77
1377 1393 4.936685 AAAATAGAGGAGAAGCCAACCT 57.063 40.909 0.00 0.00 40.02 3.50
1378 1394 4.936685 AAATAGAGGAGAAGCCAACCTT 57.063 40.909 0.00 0.00 40.02 3.50
1379 1395 4.936685 AATAGAGGAGAAGCCAACCTTT 57.063 40.909 0.00 0.00 40.02 3.11
1380 1396 2.869101 AGAGGAGAAGCCAACCTTTC 57.131 50.000 0.00 0.00 40.02 2.62
1381 1397 1.352687 AGAGGAGAAGCCAACCTTTCC 59.647 52.381 0.00 0.00 40.02 3.13
1382 1398 1.073923 GAGGAGAAGCCAACCTTTCCA 59.926 52.381 0.00 0.00 40.02 3.53
1383 1399 1.499007 AGGAGAAGCCAACCTTTCCAA 59.501 47.619 0.00 0.00 40.02 3.53
1384 1400 1.889170 GGAGAAGCCAACCTTTCCAAG 59.111 52.381 0.00 0.00 34.05 3.61
1385 1401 2.587522 GAGAAGCCAACCTTTCCAAGT 58.412 47.619 0.00 0.00 32.78 3.16
1386 1402 2.294512 GAGAAGCCAACCTTTCCAAGTG 59.705 50.000 0.00 0.00 32.78 3.16
1387 1403 0.752658 AAGCCAACCTTTCCAAGTGC 59.247 50.000 0.00 0.00 0.00 4.40
1388 1404 0.396974 AGCCAACCTTTCCAAGTGCA 60.397 50.000 0.00 0.00 0.00 4.57
1389 1405 0.681175 GCCAACCTTTCCAAGTGCAT 59.319 50.000 0.00 0.00 0.00 3.96
1390 1406 1.337167 GCCAACCTTTCCAAGTGCATC 60.337 52.381 0.00 0.00 0.00 3.91
1391 1407 1.273327 CCAACCTTTCCAAGTGCATCC 59.727 52.381 0.00 0.00 0.00 3.51
1392 1408 2.242043 CAACCTTTCCAAGTGCATCCT 58.758 47.619 0.00 0.00 0.00 3.24
1393 1409 2.206576 ACCTTTCCAAGTGCATCCTC 57.793 50.000 0.00 0.00 0.00 3.71
1394 1410 1.707427 ACCTTTCCAAGTGCATCCTCT 59.293 47.619 0.00 0.00 0.00 3.69
1395 1411 2.108952 ACCTTTCCAAGTGCATCCTCTT 59.891 45.455 0.00 0.00 0.00 2.85
1396 1412 3.160269 CCTTTCCAAGTGCATCCTCTTT 58.840 45.455 0.00 0.00 0.00 2.52
1397 1413 3.057033 CCTTTCCAAGTGCATCCTCTTTG 60.057 47.826 0.00 0.00 0.00 2.77
1398 1414 1.538047 TCCAAGTGCATCCTCTTTGC 58.462 50.000 0.00 0.00 40.55 3.68
1404 1420 2.275134 TGCATCCTCTTTGCACTCAA 57.725 45.000 0.00 0.00 44.73 3.02
1405 1421 2.585330 TGCATCCTCTTTGCACTCAAA 58.415 42.857 0.00 0.00 44.73 2.69
1419 1435 8.969121 TTTGCACTCAAAGTAATTATCATGTG 57.031 30.769 0.00 0.00 37.28 3.21
1420 1436 6.554419 TGCACTCAAAGTAATTATCATGTGC 58.446 36.000 16.74 16.74 44.69 4.57
1421 1437 6.375174 TGCACTCAAAGTAATTATCATGTGCT 59.625 34.615 20.59 0.41 44.72 4.40
1422 1438 7.552330 TGCACTCAAAGTAATTATCATGTGCTA 59.448 33.333 20.59 11.65 44.72 3.49
1423 1439 7.852945 GCACTCAAAGTAATTATCATGTGCTAC 59.147 37.037 16.51 0.00 42.26 3.58
1424 1440 8.882736 CACTCAAAGTAATTATCATGTGCTACA 58.117 33.333 0.00 0.00 0.00 2.74
1425 1441 9.448438 ACTCAAAGTAATTATCATGTGCTACAA 57.552 29.630 0.00 0.00 0.00 2.41
1426 1442 9.708222 CTCAAAGTAATTATCATGTGCTACAAC 57.292 33.333 0.00 0.00 0.00 3.32
1427 1443 9.448438 TCAAAGTAATTATCATGTGCTACAACT 57.552 29.630 0.00 0.00 0.00 3.16
1428 1444 9.708222 CAAAGTAATTATCATGTGCTACAACTC 57.292 33.333 0.00 0.00 0.00 3.01
1429 1445 9.448438 AAAGTAATTATCATGTGCTACAACTCA 57.552 29.630 0.00 0.00 0.00 3.41
1430 1446 8.425577 AGTAATTATCATGTGCTACAACTCAC 57.574 34.615 0.00 0.00 0.00 3.51
1431 1447 8.260818 AGTAATTATCATGTGCTACAACTCACT 58.739 33.333 0.00 0.00 34.49 3.41
1432 1448 7.545362 AATTATCATGTGCTACAACTCACTC 57.455 36.000 0.00 0.00 34.49 3.51
1433 1449 3.319137 TCATGTGCTACAACTCACTCC 57.681 47.619 0.00 0.00 34.49 3.85
1434 1450 2.028112 TCATGTGCTACAACTCACTCCC 60.028 50.000 0.00 0.00 34.49 4.30
1435 1451 0.317160 TGTGCTACAACTCACTCCCG 59.683 55.000 0.00 0.00 34.49 5.14
1436 1452 0.601558 GTGCTACAACTCACTCCCGA 59.398 55.000 0.00 0.00 0.00 5.14
1437 1453 1.000506 GTGCTACAACTCACTCCCGAA 59.999 52.381 0.00 0.00 0.00 4.30
1438 1454 1.899814 TGCTACAACTCACTCCCGAAT 59.100 47.619 0.00 0.00 0.00 3.34
1439 1455 3.093814 TGCTACAACTCACTCCCGAATA 58.906 45.455 0.00 0.00 0.00 1.75
1440 1456 3.119245 TGCTACAACTCACTCCCGAATAC 60.119 47.826 0.00 0.00 0.00 1.89
1441 1457 2.649331 ACAACTCACTCCCGAATACG 57.351 50.000 0.00 0.00 39.43 3.06
1442 1458 2.165167 ACAACTCACTCCCGAATACGA 58.835 47.619 0.00 0.00 42.66 3.43
1443 1459 2.758979 ACAACTCACTCCCGAATACGAT 59.241 45.455 0.00 0.00 42.66 3.73
1444 1460 3.194968 ACAACTCACTCCCGAATACGATT 59.805 43.478 0.00 0.00 42.66 3.34
1445 1461 3.438297 ACTCACTCCCGAATACGATTG 57.562 47.619 0.00 0.00 42.66 2.67
1446 1462 3.021695 ACTCACTCCCGAATACGATTGA 58.978 45.455 0.00 0.00 42.66 2.57
1447 1463 3.446161 ACTCACTCCCGAATACGATTGAA 59.554 43.478 0.00 0.00 42.66 2.69
1448 1464 3.777478 TCACTCCCGAATACGATTGAAC 58.223 45.455 0.00 0.00 42.66 3.18
1449 1465 3.193903 TCACTCCCGAATACGATTGAACA 59.806 43.478 0.00 0.00 42.66 3.18
1450 1466 3.306166 CACTCCCGAATACGATTGAACAC 59.694 47.826 0.00 0.00 42.66 3.32
1451 1467 3.056393 ACTCCCGAATACGATTGAACACA 60.056 43.478 0.00 0.00 42.66 3.72
1452 1468 4.119862 CTCCCGAATACGATTGAACACAT 58.880 43.478 0.00 0.00 42.66 3.21
1453 1469 3.868661 TCCCGAATACGATTGAACACATG 59.131 43.478 0.00 0.00 42.66 3.21
1454 1470 3.621268 CCCGAATACGATTGAACACATGT 59.379 43.478 0.00 0.00 42.66 3.21
1455 1471 4.260212 CCCGAATACGATTGAACACATGTC 60.260 45.833 0.00 0.00 42.66 3.06
1456 1472 4.566759 CCGAATACGATTGAACACATGTCT 59.433 41.667 0.00 0.00 42.66 3.41
1457 1473 5.746721 CCGAATACGATTGAACACATGTCTA 59.253 40.000 0.00 0.00 42.66 2.59
1458 1474 6.074835 CCGAATACGATTGAACACATGTCTAG 60.075 42.308 0.00 0.00 42.66 2.43
1459 1475 6.560433 CGAATACGATTGAACACATGTCTAGC 60.560 42.308 0.00 0.00 42.66 3.42
1460 1476 3.262420 ACGATTGAACACATGTCTAGCC 58.738 45.455 0.00 0.00 0.00 3.93
1461 1477 3.261580 CGATTGAACACATGTCTAGCCA 58.738 45.455 0.00 0.00 0.00 4.75
1462 1478 3.873361 CGATTGAACACATGTCTAGCCAT 59.127 43.478 0.00 0.00 0.00 4.40
1463 1479 4.025396 CGATTGAACACATGTCTAGCCATC 60.025 45.833 0.00 0.00 0.00 3.51
1464 1480 3.266510 TGAACACATGTCTAGCCATCC 57.733 47.619 0.00 0.00 0.00 3.51
1465 1481 2.571202 TGAACACATGTCTAGCCATCCA 59.429 45.455 0.00 0.00 0.00 3.41
1466 1482 2.996249 ACACATGTCTAGCCATCCAG 57.004 50.000 0.00 0.00 0.00 3.86
1467 1483 2.470990 ACACATGTCTAGCCATCCAGA 58.529 47.619 0.00 0.00 0.00 3.86
1468 1484 2.840038 ACACATGTCTAGCCATCCAGAA 59.160 45.455 0.00 0.00 0.00 3.02
1469 1485 3.118482 ACACATGTCTAGCCATCCAGAAG 60.118 47.826 0.00 0.00 0.00 2.85
1470 1486 2.158842 ACATGTCTAGCCATCCAGAAGC 60.159 50.000 0.00 0.00 0.00 3.86
1471 1487 0.461548 TGTCTAGCCATCCAGAAGCG 59.538 55.000 0.00 0.00 0.00 4.68
1472 1488 0.878086 GTCTAGCCATCCAGAAGCGC 60.878 60.000 0.00 0.00 0.00 5.92
1473 1489 1.596477 CTAGCCATCCAGAAGCGCC 60.596 63.158 2.29 0.00 0.00 6.53
1474 1490 3.445518 TAGCCATCCAGAAGCGCCG 62.446 63.158 2.29 0.00 0.00 6.46
1481 1497 3.722295 CAGAAGCGCCGCCGAAAA 61.722 61.111 4.98 0.00 36.29 2.29
1482 1498 2.975799 AGAAGCGCCGCCGAAAAA 60.976 55.556 4.98 0.00 36.29 1.94
1483 1499 2.501865 GAAGCGCCGCCGAAAAAG 60.502 61.111 4.98 0.00 36.29 2.27
1484 1500 3.249973 GAAGCGCCGCCGAAAAAGT 62.250 57.895 4.98 0.00 36.29 2.66
1485 1501 2.726850 GAAGCGCCGCCGAAAAAGTT 62.727 55.000 4.98 0.00 36.29 2.66
1486 1502 2.344521 AAGCGCCGCCGAAAAAGTTT 62.345 50.000 4.98 0.00 36.29 2.66
1487 1503 2.644576 GCGCCGCCGAAAAAGTTTG 61.645 57.895 0.00 0.00 36.29 2.93
1488 1504 2.014018 CGCCGCCGAAAAAGTTTGG 61.014 57.895 0.00 0.00 40.91 3.28
1489 1505 1.663388 GCCGCCGAAAAAGTTTGGG 60.663 57.895 0.00 0.00 38.60 4.12
1490 1506 2.034607 CCGCCGAAAAAGTTTGGGA 58.965 52.632 6.01 0.00 38.60 4.37
1491 1507 0.601057 CCGCCGAAAAAGTTTGGGAT 59.399 50.000 6.01 0.00 38.60 3.85
1492 1508 1.000394 CCGCCGAAAAAGTTTGGGATT 60.000 47.619 6.01 0.00 38.60 3.01
1493 1509 2.058057 CGCCGAAAAAGTTTGGGATTG 58.942 47.619 6.01 0.00 38.60 2.67
1494 1510 2.287909 CGCCGAAAAAGTTTGGGATTGA 60.288 45.455 6.01 0.00 38.60 2.57
1495 1511 3.723260 GCCGAAAAAGTTTGGGATTGAA 58.277 40.909 6.01 0.00 38.60 2.69
1496 1512 3.740832 GCCGAAAAAGTTTGGGATTGAAG 59.259 43.478 6.01 0.00 38.60 3.02
1497 1513 4.500716 GCCGAAAAAGTTTGGGATTGAAGA 60.501 41.667 6.01 0.00 38.60 2.87
1498 1514 5.222631 CCGAAAAAGTTTGGGATTGAAGAG 58.777 41.667 0.00 0.00 34.89 2.85
1499 1515 5.221244 CCGAAAAAGTTTGGGATTGAAGAGT 60.221 40.000 0.00 0.00 34.89 3.24
1500 1516 5.687285 CGAAAAAGTTTGGGATTGAAGAGTG 59.313 40.000 0.00 0.00 0.00 3.51
1501 1517 5.535753 AAAAGTTTGGGATTGAAGAGTGG 57.464 39.130 0.00 0.00 0.00 4.00
1502 1518 3.160679 AGTTTGGGATTGAAGAGTGGG 57.839 47.619 0.00 0.00 0.00 4.61
1503 1519 2.716424 AGTTTGGGATTGAAGAGTGGGA 59.284 45.455 0.00 0.00 0.00 4.37
1504 1520 3.140144 AGTTTGGGATTGAAGAGTGGGAA 59.860 43.478 0.00 0.00 0.00 3.97
1505 1521 2.879103 TGGGATTGAAGAGTGGGAAC 57.121 50.000 0.00 0.00 0.00 3.62
1506 1522 1.003118 TGGGATTGAAGAGTGGGAACG 59.997 52.381 0.00 0.00 0.00 3.95
1507 1523 1.003233 GGGATTGAAGAGTGGGAACGT 59.997 52.381 0.00 0.00 0.00 3.99
1508 1524 2.076863 GGATTGAAGAGTGGGAACGTG 58.923 52.381 0.00 0.00 0.00 4.49
1509 1525 1.464997 GATTGAAGAGTGGGAACGTGC 59.535 52.381 0.00 0.00 0.00 5.34
1510 1526 0.179234 TTGAAGAGTGGGAACGTGCA 59.821 50.000 0.00 0.00 0.00 4.57
1511 1527 0.396435 TGAAGAGTGGGAACGTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
1512 1528 1.202758 TGAAGAGTGGGAACGTGCATT 60.203 47.619 0.00 0.00 0.00 3.56
1513 1529 1.197721 GAAGAGTGGGAACGTGCATTG 59.802 52.381 0.00 0.00 0.00 2.82
1514 1530 0.396435 AGAGTGGGAACGTGCATTGA 59.604 50.000 0.00 0.00 0.00 2.57
1515 1531 1.202758 AGAGTGGGAACGTGCATTGAA 60.203 47.619 0.00 0.00 0.00 2.69
1516 1532 1.606668 GAGTGGGAACGTGCATTGAAA 59.393 47.619 0.00 0.00 0.00 2.69
1517 1533 1.608590 AGTGGGAACGTGCATTGAAAG 59.391 47.619 0.00 0.00 0.00 2.62
1518 1534 1.336755 GTGGGAACGTGCATTGAAAGT 59.663 47.619 0.00 0.00 0.00 2.66
1519 1535 2.550606 GTGGGAACGTGCATTGAAAGTA 59.449 45.455 0.00 0.00 0.00 2.24
1520 1536 3.003897 GTGGGAACGTGCATTGAAAGTAA 59.996 43.478 0.00 0.00 0.00 2.24
1521 1537 3.823873 TGGGAACGTGCATTGAAAGTAAT 59.176 39.130 0.00 0.00 0.00 1.89
1522 1538 4.083003 TGGGAACGTGCATTGAAAGTAATC 60.083 41.667 0.00 0.00 0.00 1.75
1523 1539 4.088648 GGAACGTGCATTGAAAGTAATCG 58.911 43.478 0.00 0.00 0.00 3.34
1524 1540 3.740044 ACGTGCATTGAAAGTAATCGG 57.260 42.857 0.00 0.00 0.00 4.18
1525 1541 3.071479 ACGTGCATTGAAAGTAATCGGT 58.929 40.909 0.00 0.00 0.00 4.69
1526 1542 3.120338 ACGTGCATTGAAAGTAATCGGTG 60.120 43.478 0.00 0.00 0.00 4.94
1527 1543 3.124466 CGTGCATTGAAAGTAATCGGTGA 59.876 43.478 0.00 0.00 0.00 4.02
1528 1544 4.377943 CGTGCATTGAAAGTAATCGGTGAA 60.378 41.667 0.00 0.00 0.00 3.18
1529 1545 5.640732 GTGCATTGAAAGTAATCGGTGAAT 58.359 37.500 0.00 0.00 0.00 2.57
1530 1546 6.456315 CGTGCATTGAAAGTAATCGGTGAATA 60.456 38.462 0.00 0.00 0.00 1.75
1531 1547 6.907212 GTGCATTGAAAGTAATCGGTGAATAG 59.093 38.462 0.00 0.00 0.00 1.73
1532 1548 6.597672 TGCATTGAAAGTAATCGGTGAATAGT 59.402 34.615 0.00 0.00 0.00 2.12
1533 1549 7.766738 TGCATTGAAAGTAATCGGTGAATAGTA 59.233 33.333 0.00 0.00 0.00 1.82
1534 1550 8.609176 GCATTGAAAGTAATCGGTGAATAGTAA 58.391 33.333 0.00 0.00 0.00 2.24
1536 1552 7.766219 TGAAAGTAATCGGTGAATAGTAAGC 57.234 36.000 0.00 0.00 0.00 3.09
1537 1553 7.324935 TGAAAGTAATCGGTGAATAGTAAGCA 58.675 34.615 0.00 0.00 0.00 3.91
1538 1554 7.820386 TGAAAGTAATCGGTGAATAGTAAGCAA 59.180 33.333 0.00 0.00 0.00 3.91
1539 1555 8.732746 AAAGTAATCGGTGAATAGTAAGCAAT 57.267 30.769 0.00 0.00 0.00 3.56
1540 1556 7.715265 AGTAATCGGTGAATAGTAAGCAATG 57.285 36.000 0.00 0.00 0.00 2.82
1541 1557 7.272978 AGTAATCGGTGAATAGTAAGCAATGT 58.727 34.615 0.00 0.00 0.00 2.71
1542 1558 6.604735 AATCGGTGAATAGTAAGCAATGTC 57.395 37.500 0.00 0.00 0.00 3.06
1543 1559 4.439057 TCGGTGAATAGTAAGCAATGTCC 58.561 43.478 0.00 0.00 0.00 4.02
1544 1560 3.245284 CGGTGAATAGTAAGCAATGTCCG 59.755 47.826 0.00 0.00 0.00 4.79
1545 1561 3.002348 GGTGAATAGTAAGCAATGTCCGC 59.998 47.826 0.00 0.00 0.00 5.54
1546 1562 3.871594 GTGAATAGTAAGCAATGTCCGCT 59.128 43.478 0.00 0.00 42.98 5.52
1547 1563 4.025647 GTGAATAGTAAGCAATGTCCGCTC 60.026 45.833 0.00 0.00 39.29 5.03
1548 1564 4.141937 TGAATAGTAAGCAATGTCCGCTCT 60.142 41.667 0.00 0.00 39.29 4.09
1549 1565 2.301577 AGTAAGCAATGTCCGCTCTC 57.698 50.000 0.00 0.00 39.29 3.20
1550 1566 1.827969 AGTAAGCAATGTCCGCTCTCT 59.172 47.619 0.00 0.00 39.29 3.10
1551 1567 2.159170 AGTAAGCAATGTCCGCTCTCTC 60.159 50.000 0.00 0.00 39.29 3.20
1552 1568 0.901124 AAGCAATGTCCGCTCTCTCT 59.099 50.000 0.00 0.00 39.29 3.10
1553 1569 1.769026 AGCAATGTCCGCTCTCTCTA 58.231 50.000 0.00 0.00 33.35 2.43
1554 1570 2.315176 AGCAATGTCCGCTCTCTCTAT 58.685 47.619 0.00 0.00 33.35 1.98
1555 1571 2.697751 AGCAATGTCCGCTCTCTCTATT 59.302 45.455 0.00 0.00 33.35 1.73
1556 1572 2.799412 GCAATGTCCGCTCTCTCTATTG 59.201 50.000 0.00 0.00 0.00 1.90
1557 1573 2.799412 CAATGTCCGCTCTCTCTATTGC 59.201 50.000 0.00 0.00 0.00 3.56
1558 1574 0.382158 TGTCCGCTCTCTCTATTGCG 59.618 55.000 0.00 0.00 46.74 4.85
1565 1581 4.707210 GCTCTCTCTATTGCGATTCAAC 57.293 45.455 0.00 0.00 37.53 3.18
1566 1582 4.115516 GCTCTCTCTATTGCGATTCAACA 58.884 43.478 0.00 0.00 37.53 3.33
1567 1583 4.026145 GCTCTCTCTATTGCGATTCAACAC 60.026 45.833 0.00 0.00 37.53 3.32
1568 1584 4.433615 TCTCTCTATTGCGATTCAACACC 58.566 43.478 0.00 0.00 37.53 4.16
1569 1585 4.081697 TCTCTCTATTGCGATTCAACACCA 60.082 41.667 0.00 0.00 37.53 4.17
1570 1586 4.574892 TCTCTATTGCGATTCAACACCAA 58.425 39.130 0.00 0.00 37.53 3.67
1571 1587 5.000591 TCTCTATTGCGATTCAACACCAAA 58.999 37.500 0.00 0.00 37.53 3.28
1572 1588 5.122239 TCTCTATTGCGATTCAACACCAAAG 59.878 40.000 0.00 0.00 37.53 2.77
1573 1589 5.000591 TCTATTGCGATTCAACACCAAAGA 58.999 37.500 0.00 0.00 37.53 2.52
1574 1590 4.582701 ATTGCGATTCAACACCAAAGAA 57.417 36.364 0.00 0.00 37.53 2.52
1575 1591 4.582701 TTGCGATTCAACACCAAAGAAT 57.417 36.364 0.00 0.00 34.88 2.40
1576 1592 3.899734 TGCGATTCAACACCAAAGAATG 58.100 40.909 0.00 0.00 32.51 2.67
1577 1593 6.079250 ATTGCGATTCAACACCAAAGAATGG 61.079 40.000 0.00 0.00 45.78 3.16
1587 1603 3.141002 CCAAAGAATGGTGCGAGATTG 57.859 47.619 0.00 0.00 44.85 2.67
1588 1604 2.749076 CCAAAGAATGGTGCGAGATTGA 59.251 45.455 0.00 0.00 44.85 2.57
1589 1605 3.379372 CCAAAGAATGGTGCGAGATTGAT 59.621 43.478 0.00 0.00 44.85 2.57
1590 1606 4.497006 CCAAAGAATGGTGCGAGATTGATC 60.497 45.833 0.00 0.00 44.85 2.92
1591 1607 2.843701 AGAATGGTGCGAGATTGATCC 58.156 47.619 0.00 0.00 0.00 3.36
1592 1608 1.876156 GAATGGTGCGAGATTGATCCC 59.124 52.381 0.00 0.00 0.00 3.85
1593 1609 0.109342 ATGGTGCGAGATTGATCCCC 59.891 55.000 0.00 0.00 0.00 4.81
1594 1610 0.982852 TGGTGCGAGATTGATCCCCT 60.983 55.000 0.00 0.00 0.00 4.79
1595 1611 0.533755 GGTGCGAGATTGATCCCCTG 60.534 60.000 0.00 0.00 0.00 4.45
1596 1612 0.179000 GTGCGAGATTGATCCCCTGT 59.821 55.000 0.00 0.00 0.00 4.00
1597 1613 1.412710 GTGCGAGATTGATCCCCTGTA 59.587 52.381 0.00 0.00 0.00 2.74
1598 1614 1.412710 TGCGAGATTGATCCCCTGTAC 59.587 52.381 0.00 0.00 0.00 2.90
1599 1615 1.270358 GCGAGATTGATCCCCTGTACC 60.270 57.143 0.00 0.00 0.00 3.34
1600 1616 1.344763 CGAGATTGATCCCCTGTACCC 59.655 57.143 0.00 0.00 0.00 3.69
1601 1617 2.695585 GAGATTGATCCCCTGTACCCT 58.304 52.381 0.00 0.00 0.00 4.34
1602 1618 2.370189 GAGATTGATCCCCTGTACCCTG 59.630 54.545 0.00 0.00 0.00 4.45
1603 1619 1.421646 GATTGATCCCCTGTACCCTGG 59.578 57.143 0.00 0.00 0.00 4.45
1604 1620 1.279025 TTGATCCCCTGTACCCTGGC 61.279 60.000 0.00 0.00 0.00 4.85
1605 1621 2.368329 ATCCCCTGTACCCTGGCC 60.368 66.667 0.00 0.00 0.00 5.36
1609 1625 4.473520 CCTGTACCCTGGCCGCTG 62.474 72.222 0.00 0.00 0.00 5.18
1625 1641 2.315925 GCTGCCTAGCTATGTGTTCA 57.684 50.000 0.00 0.00 46.57 3.18
1626 1642 2.843701 GCTGCCTAGCTATGTGTTCAT 58.156 47.619 0.00 0.00 46.57 2.57
1627 1643 3.209410 GCTGCCTAGCTATGTGTTCATT 58.791 45.455 0.00 0.00 46.57 2.57
1628 1644 3.003068 GCTGCCTAGCTATGTGTTCATTG 59.997 47.826 0.00 0.00 46.57 2.82
1629 1645 4.445453 CTGCCTAGCTATGTGTTCATTGA 58.555 43.478 0.00 0.00 35.70 2.57
1630 1646 4.191544 TGCCTAGCTATGTGTTCATTGAC 58.808 43.478 0.00 0.00 35.70 3.18
1631 1647 4.191544 GCCTAGCTATGTGTTCATTGACA 58.808 43.478 0.00 0.00 35.70 3.58
1632 1648 4.635765 GCCTAGCTATGTGTTCATTGACAA 59.364 41.667 0.00 0.00 35.70 3.18
1633 1649 5.220739 GCCTAGCTATGTGTTCATTGACAAG 60.221 44.000 0.00 0.00 35.70 3.16
1634 1650 4.691860 AGCTATGTGTTCATTGACAAGC 57.308 40.909 0.00 0.00 35.70 4.01
1635 1651 4.074259 AGCTATGTGTTCATTGACAAGCA 58.926 39.130 0.00 0.00 35.70 3.91
1636 1652 4.520111 AGCTATGTGTTCATTGACAAGCAA 59.480 37.500 0.00 0.00 41.53 3.91
1637 1653 5.009911 AGCTATGTGTTCATTGACAAGCAAA 59.990 36.000 0.00 0.00 40.48 3.68
1638 1654 5.344128 GCTATGTGTTCATTGACAAGCAAAG 59.656 40.000 0.00 0.00 40.48 2.77
1639 1655 3.446799 TGTGTTCATTGACAAGCAAAGC 58.553 40.909 0.00 0.00 40.48 3.51
1640 1656 2.796593 GTGTTCATTGACAAGCAAAGCC 59.203 45.455 0.00 0.00 40.48 4.35
1641 1657 2.053627 GTTCATTGACAAGCAAAGCCG 58.946 47.619 0.00 0.00 40.48 5.52
1642 1658 0.039256 TCATTGACAAGCAAAGCCGC 60.039 50.000 0.00 0.00 40.48 6.53
1643 1659 0.318869 CATTGACAAGCAAAGCCGCA 60.319 50.000 0.00 0.00 40.48 5.69
1644 1660 0.388659 ATTGACAAGCAAAGCCGCAA 59.611 45.000 0.00 0.00 40.48 4.85
1645 1661 0.248990 TTGACAAGCAAAGCCGCAAG 60.249 50.000 0.00 0.00 32.46 4.01
1646 1662 2.018324 GACAAGCAAAGCCGCAAGC 61.018 57.895 0.00 0.00 44.25 4.01
1656 1672 2.153039 GCCGCAAGCACAAATTTCC 58.847 52.632 0.00 0.00 42.97 3.13
1657 1673 0.319813 GCCGCAAGCACAAATTTCCT 60.320 50.000 0.00 0.00 42.97 3.36
1658 1674 1.701704 CCGCAAGCACAAATTTCCTC 58.298 50.000 0.00 0.00 0.00 3.71
1659 1675 1.000385 CCGCAAGCACAAATTTCCTCA 60.000 47.619 0.00 0.00 0.00 3.86
1660 1676 2.353011 CCGCAAGCACAAATTTCCTCAT 60.353 45.455 0.00 0.00 0.00 2.90
1661 1677 2.919229 CGCAAGCACAAATTTCCTCATC 59.081 45.455 0.00 0.00 0.00 2.92
1662 1678 3.612241 CGCAAGCACAAATTTCCTCATCA 60.612 43.478 0.00 0.00 0.00 3.07
1663 1679 4.501071 GCAAGCACAAATTTCCTCATCAT 58.499 39.130 0.00 0.00 0.00 2.45
1664 1680 4.565564 GCAAGCACAAATTTCCTCATCATC 59.434 41.667 0.00 0.00 0.00 2.92
1665 1681 4.996788 AGCACAAATTTCCTCATCATCC 57.003 40.909 0.00 0.00 0.00 3.51
1666 1682 3.379372 AGCACAAATTTCCTCATCATCCG 59.621 43.478 0.00 0.00 0.00 4.18
1667 1683 3.378112 GCACAAATTTCCTCATCATCCGA 59.622 43.478 0.00 0.00 0.00 4.55
1668 1684 4.731773 GCACAAATTTCCTCATCATCCGAC 60.732 45.833 0.00 0.00 0.00 4.79
1669 1685 3.623060 ACAAATTTCCTCATCATCCGACG 59.377 43.478 0.00 0.00 0.00 5.12
1670 1686 3.819564 AATTTCCTCATCATCCGACGA 57.180 42.857 0.00 0.00 0.00 4.20
1671 1687 4.342862 AATTTCCTCATCATCCGACGAT 57.657 40.909 0.00 0.00 0.00 3.73
1672 1688 2.800881 TTCCTCATCATCCGACGATG 57.199 50.000 0.00 0.00 46.30 3.84
1681 1697 1.586422 ATCCGACGATGAATTGCCTG 58.414 50.000 0.00 0.00 0.00 4.85
1682 1698 0.534873 TCCGACGATGAATTGCCTGA 59.465 50.000 0.00 0.00 0.00 3.86
1683 1699 1.138859 TCCGACGATGAATTGCCTGAT 59.861 47.619 0.00 0.00 0.00 2.90
1684 1700 1.262417 CCGACGATGAATTGCCTGATG 59.738 52.381 0.00 0.00 0.00 3.07
1685 1701 2.204237 CGACGATGAATTGCCTGATGA 58.796 47.619 0.00 0.00 0.00 2.92
1686 1702 2.609002 CGACGATGAATTGCCTGATGAA 59.391 45.455 0.00 0.00 0.00 2.57
1687 1703 3.544834 CGACGATGAATTGCCTGATGAAC 60.545 47.826 0.00 0.00 0.00 3.18
1688 1704 3.346315 ACGATGAATTGCCTGATGAACA 58.654 40.909 0.00 0.00 0.00 3.18
1694 1710 6.099159 TGAATTGCCTGATGAACAAATGAA 57.901 33.333 0.00 0.00 0.00 2.57
1962 1978 2.880879 CGTGTCGGTCATCAGCGG 60.881 66.667 0.00 0.00 43.94 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 7.330208 GCATCTTCCCAAATATTGATGTTATGC 59.670 37.037 10.95 7.92 35.22 3.14
319 328 0.033601 CCGTCCCATCCCATTGGAAA 60.034 55.000 3.62 0.00 45.98 3.13
488 500 5.731591 TCGTATCTTCTACACACTGAGAGA 58.268 41.667 0.00 0.00 0.00 3.10
496 508 5.161358 CAAGTGCTTCGTATCTTCTACACA 58.839 41.667 0.00 0.00 0.00 3.72
580 592 4.081752 ACGATCAATCTCACAAGCTCTCTT 60.082 41.667 0.00 0.00 0.00 2.85
610 622 7.354312 AGTAATAGGTATTCCAATGTTGCCTT 58.646 34.615 0.00 0.00 35.89 4.35
758 770 3.120468 TCCCCATTGAGATCTGAGTCA 57.880 47.619 0.00 0.00 0.00 3.41
879 893 0.591659 GGTCAAAAGAGGCGTCAACC 59.408 55.000 9.41 4.49 0.00 3.77
924 939 3.119316 CCTTGTCGTCTCTCAATACTGCT 60.119 47.826 0.00 0.00 0.00 4.24
945 960 2.422945 CCCTCCTGCAATAAACCTACCC 60.423 54.545 0.00 0.00 0.00 3.69
1052 1067 7.172190 CAGAGTTGATGATTAGGCGATTACATT 59.828 37.037 0.00 0.00 0.00 2.71
1091 1106 1.293924 GTCCTGCATGGTCTCAATCG 58.706 55.000 0.00 0.00 37.07 3.34
1185 1200 7.427606 GTCTCTCTATTGCAATGTTCGAATTTG 59.572 37.037 22.27 15.58 0.00 2.32
1360 1376 2.572104 GGAAAGGTTGGCTTCTCCTCTA 59.428 50.000 0.00 0.00 35.26 2.43
1375 1391 6.639108 GCAAAGAGGATGCACTTGGAAAGG 62.639 50.000 2.94 0.00 40.43 3.11
1376 1392 3.613432 GCAAAGAGGATGCACTTGGAAAG 60.613 47.826 2.94 0.00 43.29 2.62
1377 1393 2.297033 GCAAAGAGGATGCACTTGGAAA 59.703 45.455 2.94 0.00 43.29 3.13
1378 1394 1.888512 GCAAAGAGGATGCACTTGGAA 59.111 47.619 2.94 0.00 43.29 3.53
1379 1395 1.538047 GCAAAGAGGATGCACTTGGA 58.462 50.000 2.94 0.00 43.29 3.53
1394 1410 7.541783 GCACATGATAATTACTTTGAGTGCAAA 59.458 33.333 17.44 0.00 45.57 3.68
1395 1411 7.028962 GCACATGATAATTACTTTGAGTGCAA 58.971 34.615 17.44 0.00 45.57 4.08
1396 1412 6.554419 GCACATGATAATTACTTTGAGTGCA 58.446 36.000 17.44 0.00 45.57 4.57
1397 1413 6.789262 AGCACATGATAATTACTTTGAGTGC 58.211 36.000 15.81 15.81 46.34 4.40
1398 1414 8.882736 TGTAGCACATGATAATTACTTTGAGTG 58.117 33.333 0.00 0.00 0.00 3.51
1399 1415 9.448438 TTGTAGCACATGATAATTACTTTGAGT 57.552 29.630 0.00 0.00 0.00 3.41
1400 1416 9.708222 GTTGTAGCACATGATAATTACTTTGAG 57.292 33.333 0.00 0.00 0.00 3.02
1401 1417 9.448438 AGTTGTAGCACATGATAATTACTTTGA 57.552 29.630 0.00 0.00 0.00 2.69
1402 1418 9.708222 GAGTTGTAGCACATGATAATTACTTTG 57.292 33.333 0.00 0.00 0.00 2.77
1403 1419 9.448438 TGAGTTGTAGCACATGATAATTACTTT 57.552 29.630 0.00 0.00 0.00 2.66
1404 1420 8.883731 GTGAGTTGTAGCACATGATAATTACTT 58.116 33.333 0.00 0.00 35.19 2.24
1405 1421 8.260818 AGTGAGTTGTAGCACATGATAATTACT 58.739 33.333 0.00 0.00 37.48 2.24
1406 1422 8.425577 AGTGAGTTGTAGCACATGATAATTAC 57.574 34.615 0.00 0.00 37.48 1.89
1407 1423 7.710907 GGAGTGAGTTGTAGCACATGATAATTA 59.289 37.037 0.00 0.00 37.48 1.40
1408 1424 6.540189 GGAGTGAGTTGTAGCACATGATAATT 59.460 38.462 0.00 0.00 37.48 1.40
1409 1425 6.051717 GGAGTGAGTTGTAGCACATGATAAT 58.948 40.000 0.00 0.00 37.48 1.28
1410 1426 5.419542 GGAGTGAGTTGTAGCACATGATAA 58.580 41.667 0.00 0.00 37.48 1.75
1411 1427 4.141937 GGGAGTGAGTTGTAGCACATGATA 60.142 45.833 0.00 0.00 37.48 2.15
1412 1428 3.369892 GGGAGTGAGTTGTAGCACATGAT 60.370 47.826 0.00 0.00 37.48 2.45
1413 1429 2.028112 GGGAGTGAGTTGTAGCACATGA 60.028 50.000 0.00 0.00 37.48 3.07
1414 1430 2.350522 GGGAGTGAGTTGTAGCACATG 58.649 52.381 0.00 0.00 37.48 3.21
1415 1431 1.066858 CGGGAGTGAGTTGTAGCACAT 60.067 52.381 0.00 0.00 37.48 3.21
1416 1432 0.317160 CGGGAGTGAGTTGTAGCACA 59.683 55.000 0.00 0.00 37.48 4.57
1417 1433 0.601558 TCGGGAGTGAGTTGTAGCAC 59.398 55.000 0.00 0.00 35.30 4.40
1418 1434 1.334160 TTCGGGAGTGAGTTGTAGCA 58.666 50.000 0.00 0.00 0.00 3.49
1419 1435 2.674796 ATTCGGGAGTGAGTTGTAGC 57.325 50.000 0.00 0.00 0.00 3.58
1420 1436 3.376234 TCGTATTCGGGAGTGAGTTGTAG 59.624 47.826 0.00 0.00 37.69 2.74
1421 1437 3.346315 TCGTATTCGGGAGTGAGTTGTA 58.654 45.455 0.00 0.00 37.69 2.41
1422 1438 2.165167 TCGTATTCGGGAGTGAGTTGT 58.835 47.619 0.00 0.00 37.69 3.32
1423 1439 2.933495 TCGTATTCGGGAGTGAGTTG 57.067 50.000 0.00 0.00 37.69 3.16
1424 1440 3.446161 TCAATCGTATTCGGGAGTGAGTT 59.554 43.478 0.00 0.00 37.69 3.01
1425 1441 3.021695 TCAATCGTATTCGGGAGTGAGT 58.978 45.455 0.00 0.00 37.69 3.41
1426 1442 3.710326 TCAATCGTATTCGGGAGTGAG 57.290 47.619 0.00 0.00 37.69 3.51
1427 1443 3.193903 TGTTCAATCGTATTCGGGAGTGA 59.806 43.478 0.00 0.00 37.69 3.41
1428 1444 3.306166 GTGTTCAATCGTATTCGGGAGTG 59.694 47.826 0.00 0.00 37.69 3.51
1429 1445 3.056393 TGTGTTCAATCGTATTCGGGAGT 60.056 43.478 0.00 0.00 37.69 3.85
1430 1446 3.517602 TGTGTTCAATCGTATTCGGGAG 58.482 45.455 0.00 0.00 37.69 4.30
1431 1447 3.596310 TGTGTTCAATCGTATTCGGGA 57.404 42.857 0.00 0.00 37.69 5.14
1432 1448 3.621268 ACATGTGTTCAATCGTATTCGGG 59.379 43.478 0.00 0.00 37.69 5.14
1433 1449 4.566759 AGACATGTGTTCAATCGTATTCGG 59.433 41.667 1.15 0.00 37.69 4.30
1434 1450 5.702622 AGACATGTGTTCAATCGTATTCG 57.297 39.130 1.15 0.00 38.55 3.34
1435 1451 6.292381 GGCTAGACATGTGTTCAATCGTATTC 60.292 42.308 1.15 0.00 0.00 1.75
1436 1452 5.523916 GGCTAGACATGTGTTCAATCGTATT 59.476 40.000 1.15 0.00 0.00 1.89
1437 1453 5.050490 GGCTAGACATGTGTTCAATCGTAT 58.950 41.667 1.15 0.00 0.00 3.06
1438 1454 4.081917 TGGCTAGACATGTGTTCAATCGTA 60.082 41.667 1.15 0.00 0.00 3.43
1439 1455 3.262420 GGCTAGACATGTGTTCAATCGT 58.738 45.455 1.15 0.00 0.00 3.73
1440 1456 3.261580 TGGCTAGACATGTGTTCAATCG 58.738 45.455 1.15 0.00 0.00 3.34
1441 1457 4.274459 GGATGGCTAGACATGTGTTCAATC 59.726 45.833 18.06 0.00 0.00 2.67
1442 1458 4.202441 GGATGGCTAGACATGTGTTCAAT 58.798 43.478 18.06 0.00 0.00 2.57
1443 1459 3.008923 TGGATGGCTAGACATGTGTTCAA 59.991 43.478 18.06 0.00 0.00 2.69
1444 1460 2.571202 TGGATGGCTAGACATGTGTTCA 59.429 45.455 18.06 3.55 0.00 3.18
1445 1461 3.118629 TCTGGATGGCTAGACATGTGTTC 60.119 47.826 18.06 0.85 0.00 3.18
1446 1462 2.840038 TCTGGATGGCTAGACATGTGTT 59.160 45.455 18.06 0.00 0.00 3.32
1447 1463 2.470990 TCTGGATGGCTAGACATGTGT 58.529 47.619 18.06 0.22 0.00 3.72
1448 1464 3.464907 CTTCTGGATGGCTAGACATGTG 58.535 50.000 18.06 5.76 30.69 3.21
1449 1465 2.158842 GCTTCTGGATGGCTAGACATGT 60.159 50.000 18.06 0.00 30.69 3.21
1450 1466 2.492012 GCTTCTGGATGGCTAGACATG 58.508 52.381 18.06 1.24 30.69 3.21
1451 1467 1.069823 CGCTTCTGGATGGCTAGACAT 59.930 52.381 12.01 12.01 30.69 3.06
1452 1468 0.461548 CGCTTCTGGATGGCTAGACA 59.538 55.000 0.00 0.00 30.69 3.41
1453 1469 0.878086 GCGCTTCTGGATGGCTAGAC 60.878 60.000 0.00 0.00 30.69 2.59
1454 1470 1.443407 GCGCTTCTGGATGGCTAGA 59.557 57.895 0.00 0.00 0.00 2.43
1455 1471 1.596477 GGCGCTTCTGGATGGCTAG 60.596 63.158 7.64 0.00 0.00 3.42
1456 1472 2.505982 GGCGCTTCTGGATGGCTA 59.494 61.111 7.64 0.00 0.00 3.93
1457 1473 4.845580 CGGCGCTTCTGGATGGCT 62.846 66.667 7.64 0.00 0.00 4.75
1464 1480 3.248630 TTTTTCGGCGGCGCTTCTG 62.249 57.895 32.30 18.48 0.00 3.02
1465 1481 2.966309 CTTTTTCGGCGGCGCTTCT 61.966 57.895 32.30 0.00 0.00 2.85
1466 1482 2.501865 CTTTTTCGGCGGCGCTTC 60.502 61.111 32.30 15.25 0.00 3.86
1467 1483 2.344521 AAACTTTTTCGGCGGCGCTT 62.345 50.000 32.30 12.57 0.00 4.68
1468 1484 2.841160 AAACTTTTTCGGCGGCGCT 61.841 52.632 32.30 5.92 0.00 5.92
1469 1485 2.354188 AAACTTTTTCGGCGGCGC 60.354 55.556 28.25 26.17 0.00 6.53
1470 1486 2.014018 CCAAACTTTTTCGGCGGCG 61.014 57.895 27.15 27.15 0.00 6.46
1471 1487 1.663388 CCCAAACTTTTTCGGCGGC 60.663 57.895 7.21 0.00 0.00 6.53
1472 1488 0.601057 ATCCCAAACTTTTTCGGCGG 59.399 50.000 7.21 0.00 0.00 6.13
1473 1489 2.058057 CAATCCCAAACTTTTTCGGCG 58.942 47.619 0.00 0.00 0.00 6.46
1474 1490 3.378911 TCAATCCCAAACTTTTTCGGC 57.621 42.857 0.00 0.00 0.00 5.54
1475 1491 5.195001 TCTTCAATCCCAAACTTTTTCGG 57.805 39.130 0.00 0.00 0.00 4.30
1476 1492 5.687285 CACTCTTCAATCCCAAACTTTTTCG 59.313 40.000 0.00 0.00 0.00 3.46
1477 1493 5.985530 CCACTCTTCAATCCCAAACTTTTTC 59.014 40.000 0.00 0.00 0.00 2.29
1478 1494 5.163311 CCCACTCTTCAATCCCAAACTTTTT 60.163 40.000 0.00 0.00 0.00 1.94
1479 1495 4.344968 CCCACTCTTCAATCCCAAACTTTT 59.655 41.667 0.00 0.00 0.00 2.27
1480 1496 3.897505 CCCACTCTTCAATCCCAAACTTT 59.102 43.478 0.00 0.00 0.00 2.66
1481 1497 3.140144 TCCCACTCTTCAATCCCAAACTT 59.860 43.478 0.00 0.00 0.00 2.66
1482 1498 2.716424 TCCCACTCTTCAATCCCAAACT 59.284 45.455 0.00 0.00 0.00 2.66
1483 1499 3.154827 TCCCACTCTTCAATCCCAAAC 57.845 47.619 0.00 0.00 0.00 2.93
1484 1500 3.496331 GTTCCCACTCTTCAATCCCAAA 58.504 45.455 0.00 0.00 0.00 3.28
1485 1501 2.552155 CGTTCCCACTCTTCAATCCCAA 60.552 50.000 0.00 0.00 0.00 4.12
1486 1502 1.003118 CGTTCCCACTCTTCAATCCCA 59.997 52.381 0.00 0.00 0.00 4.37
1487 1503 1.003233 ACGTTCCCACTCTTCAATCCC 59.997 52.381 0.00 0.00 0.00 3.85
1488 1504 2.076863 CACGTTCCCACTCTTCAATCC 58.923 52.381 0.00 0.00 0.00 3.01
1489 1505 1.464997 GCACGTTCCCACTCTTCAATC 59.535 52.381 0.00 0.00 0.00 2.67
1490 1506 1.202758 TGCACGTTCCCACTCTTCAAT 60.203 47.619 0.00 0.00 0.00 2.57
1491 1507 0.179234 TGCACGTTCCCACTCTTCAA 59.821 50.000 0.00 0.00 0.00 2.69
1492 1508 0.396435 ATGCACGTTCCCACTCTTCA 59.604 50.000 0.00 0.00 0.00 3.02
1493 1509 1.197721 CAATGCACGTTCCCACTCTTC 59.802 52.381 0.00 0.00 0.00 2.87
1494 1510 1.202758 TCAATGCACGTTCCCACTCTT 60.203 47.619 0.00 0.00 0.00 2.85
1495 1511 0.396435 TCAATGCACGTTCCCACTCT 59.604 50.000 0.00 0.00 0.00 3.24
1496 1512 1.234821 TTCAATGCACGTTCCCACTC 58.765 50.000 0.00 0.00 0.00 3.51
1497 1513 1.608590 CTTTCAATGCACGTTCCCACT 59.391 47.619 0.00 0.00 0.00 4.00
1498 1514 1.336755 ACTTTCAATGCACGTTCCCAC 59.663 47.619 0.00 0.00 0.00 4.61
1499 1515 1.686355 ACTTTCAATGCACGTTCCCA 58.314 45.000 0.00 0.00 0.00 4.37
1500 1516 3.907894 TTACTTTCAATGCACGTTCCC 57.092 42.857 0.00 0.00 0.00 3.97
1501 1517 4.088648 CGATTACTTTCAATGCACGTTCC 58.911 43.478 0.00 0.00 0.00 3.62
1502 1518 4.088648 CCGATTACTTTCAATGCACGTTC 58.911 43.478 0.00 0.00 0.00 3.95
1503 1519 3.500680 ACCGATTACTTTCAATGCACGTT 59.499 39.130 0.00 0.00 0.00 3.99
1504 1520 3.071479 ACCGATTACTTTCAATGCACGT 58.929 40.909 0.00 0.00 0.00 4.49
1505 1521 3.124466 TCACCGATTACTTTCAATGCACG 59.876 43.478 0.00 0.00 0.00 5.34
1506 1522 4.678509 TCACCGATTACTTTCAATGCAC 57.321 40.909 0.00 0.00 0.00 4.57
1507 1523 5.895636 ATTCACCGATTACTTTCAATGCA 57.104 34.783 0.00 0.00 0.00 3.96
1508 1524 7.016361 ACTATTCACCGATTACTTTCAATGC 57.984 36.000 0.00 0.00 0.00 3.56
1510 1526 8.827677 GCTTACTATTCACCGATTACTTTCAAT 58.172 33.333 0.00 0.00 0.00 2.57
1511 1527 7.820386 TGCTTACTATTCACCGATTACTTTCAA 59.180 33.333 0.00 0.00 0.00 2.69
1512 1528 7.324935 TGCTTACTATTCACCGATTACTTTCA 58.675 34.615 0.00 0.00 0.00 2.69
1513 1529 7.766219 TGCTTACTATTCACCGATTACTTTC 57.234 36.000 0.00 0.00 0.00 2.62
1514 1530 8.612619 CATTGCTTACTATTCACCGATTACTTT 58.387 33.333 0.00 0.00 0.00 2.66
1515 1531 7.769044 ACATTGCTTACTATTCACCGATTACTT 59.231 33.333 0.00 0.00 0.00 2.24
1516 1532 7.272978 ACATTGCTTACTATTCACCGATTACT 58.727 34.615 0.00 0.00 0.00 2.24
1517 1533 7.307219 GGACATTGCTTACTATTCACCGATTAC 60.307 40.741 0.00 0.00 0.00 1.89
1518 1534 6.704493 GGACATTGCTTACTATTCACCGATTA 59.296 38.462 0.00 0.00 0.00 1.75
1519 1535 5.527582 GGACATTGCTTACTATTCACCGATT 59.472 40.000 0.00 0.00 0.00 3.34
1520 1536 5.057149 GGACATTGCTTACTATTCACCGAT 58.943 41.667 0.00 0.00 0.00 4.18
1521 1537 4.439057 GGACATTGCTTACTATTCACCGA 58.561 43.478 0.00 0.00 0.00 4.69
1522 1538 3.245284 CGGACATTGCTTACTATTCACCG 59.755 47.826 0.00 0.00 0.00 4.94
1523 1539 3.002348 GCGGACATTGCTTACTATTCACC 59.998 47.826 0.00 0.00 0.00 4.02
1524 1540 3.871594 AGCGGACATTGCTTACTATTCAC 59.128 43.478 0.00 0.00 40.48 3.18
1525 1541 4.119862 GAGCGGACATTGCTTACTATTCA 58.880 43.478 0.00 0.00 44.18 2.57
1526 1542 4.372656 AGAGCGGACATTGCTTACTATTC 58.627 43.478 0.00 0.00 44.18 1.75
1527 1543 4.100189 AGAGAGCGGACATTGCTTACTATT 59.900 41.667 0.00 0.00 44.18 1.73
1528 1544 3.639094 AGAGAGCGGACATTGCTTACTAT 59.361 43.478 0.00 0.00 44.18 2.12
1529 1545 3.024547 AGAGAGCGGACATTGCTTACTA 58.975 45.455 0.00 0.00 44.18 1.82
1530 1546 1.827969 AGAGAGCGGACATTGCTTACT 59.172 47.619 0.00 0.00 44.18 2.24
1531 1547 2.159170 AGAGAGAGCGGACATTGCTTAC 60.159 50.000 0.00 0.00 44.18 2.34
1532 1548 2.103373 AGAGAGAGCGGACATTGCTTA 58.897 47.619 0.00 0.00 44.18 3.09
1533 1549 0.901124 AGAGAGAGCGGACATTGCTT 59.099 50.000 0.00 0.00 44.18 3.91
1535 1551 2.799412 CAATAGAGAGAGCGGACATTGC 59.201 50.000 0.00 0.00 0.00 3.56
1536 1552 2.799412 GCAATAGAGAGAGCGGACATTG 59.201 50.000 0.00 0.00 0.00 2.82
1537 1553 2.544694 CGCAATAGAGAGAGCGGACATT 60.545 50.000 0.00 0.00 45.83 2.71
1538 1554 1.000827 CGCAATAGAGAGAGCGGACAT 60.001 52.381 0.00 0.00 45.83 3.06
1539 1555 0.382158 CGCAATAGAGAGAGCGGACA 59.618 55.000 0.00 0.00 45.83 4.02
1540 1556 3.171705 CGCAATAGAGAGAGCGGAC 57.828 57.895 0.00 0.00 45.83 4.79
1544 1560 4.026145 GTGTTGAATCGCAATAGAGAGAGC 60.026 45.833 0.00 0.00 39.03 4.09
1545 1561 4.505922 GGTGTTGAATCGCAATAGAGAGAG 59.494 45.833 0.00 0.00 39.03 3.20
1546 1562 4.081697 TGGTGTTGAATCGCAATAGAGAGA 60.082 41.667 0.00 0.00 39.03 3.10
1547 1563 4.183865 TGGTGTTGAATCGCAATAGAGAG 58.816 43.478 0.00 0.00 39.03 3.20
1548 1564 4.200838 TGGTGTTGAATCGCAATAGAGA 57.799 40.909 0.00 0.00 39.03 3.10
1549 1565 4.944962 TTGGTGTTGAATCGCAATAGAG 57.055 40.909 0.00 0.00 39.03 2.43
1550 1566 5.000591 TCTTTGGTGTTGAATCGCAATAGA 58.999 37.500 0.00 0.00 39.03 1.98
1551 1567 5.295431 TCTTTGGTGTTGAATCGCAATAG 57.705 39.130 0.00 0.00 39.03 1.73
1552 1568 5.697473 TTCTTTGGTGTTGAATCGCAATA 57.303 34.783 0.00 0.00 39.03 1.90
1553 1569 4.582701 TTCTTTGGTGTTGAATCGCAAT 57.417 36.364 0.00 0.00 39.03 3.56
1554 1570 4.297510 CATTCTTTGGTGTTGAATCGCAA 58.702 39.130 0.00 0.00 0.00 4.85
1555 1571 3.305267 CCATTCTTTGGTGTTGAATCGCA 60.305 43.478 0.00 0.00 40.99 5.10
1556 1572 3.244976 CCATTCTTTGGTGTTGAATCGC 58.755 45.455 0.00 0.00 40.99 4.58
1568 1584 4.497006 GGATCAATCTCGCACCATTCTTTG 60.497 45.833 0.00 0.00 0.00 2.77
1569 1585 3.629398 GGATCAATCTCGCACCATTCTTT 59.371 43.478 0.00 0.00 0.00 2.52
1570 1586 3.209410 GGATCAATCTCGCACCATTCTT 58.791 45.455 0.00 0.00 0.00 2.52
1571 1587 2.486191 GGGATCAATCTCGCACCATTCT 60.486 50.000 0.00 0.00 0.00 2.40
1572 1588 1.876156 GGGATCAATCTCGCACCATTC 59.124 52.381 0.00 0.00 0.00 2.67
1573 1589 1.477558 GGGGATCAATCTCGCACCATT 60.478 52.381 0.00 0.00 0.00 3.16
1574 1590 0.109342 GGGGATCAATCTCGCACCAT 59.891 55.000 0.00 0.00 0.00 3.55
1575 1591 0.982852 AGGGGATCAATCTCGCACCA 60.983 55.000 0.00 0.00 0.00 4.17
1576 1592 0.533755 CAGGGGATCAATCTCGCACC 60.534 60.000 0.00 0.00 0.00 5.01
1577 1593 0.179000 ACAGGGGATCAATCTCGCAC 59.821 55.000 0.00 0.00 0.00 5.34
1578 1594 1.412710 GTACAGGGGATCAATCTCGCA 59.587 52.381 0.00 0.00 0.00 5.10
1579 1595 1.270358 GGTACAGGGGATCAATCTCGC 60.270 57.143 0.00 0.00 0.00 5.03
1580 1596 1.344763 GGGTACAGGGGATCAATCTCG 59.655 57.143 0.00 0.00 0.00 4.04
1581 1597 2.370189 CAGGGTACAGGGGATCAATCTC 59.630 54.545 0.00 0.00 0.00 2.75
1582 1598 2.412591 CAGGGTACAGGGGATCAATCT 58.587 52.381 0.00 0.00 0.00 2.40
1583 1599 1.421646 CCAGGGTACAGGGGATCAATC 59.578 57.143 0.00 0.00 0.00 2.67
1584 1600 1.522900 CCAGGGTACAGGGGATCAAT 58.477 55.000 0.00 0.00 0.00 2.57
1585 1601 1.279025 GCCAGGGTACAGGGGATCAA 61.279 60.000 0.00 0.00 0.00 2.57
1586 1602 1.692749 GCCAGGGTACAGGGGATCA 60.693 63.158 0.00 0.00 0.00 2.92
1587 1603 2.452937 GGCCAGGGTACAGGGGATC 61.453 68.421 0.00 0.00 0.00 3.36
1588 1604 2.368329 GGCCAGGGTACAGGGGAT 60.368 66.667 0.00 0.00 0.00 3.85
1592 1608 4.473520 CAGCGGCCAGGGTACAGG 62.474 72.222 2.24 0.00 0.00 4.00
1607 1623 4.272018 GTCAATGAACACATAGCTAGGCAG 59.728 45.833 5.07 0.93 0.00 4.85
1608 1624 4.191544 GTCAATGAACACATAGCTAGGCA 58.808 43.478 5.07 0.00 0.00 4.75
1609 1625 4.191544 TGTCAATGAACACATAGCTAGGC 58.808 43.478 5.07 0.00 0.00 3.93
1610 1626 5.220739 GCTTGTCAATGAACACATAGCTAGG 60.221 44.000 3.34 3.34 0.00 3.02
1611 1627 5.352293 TGCTTGTCAATGAACACATAGCTAG 59.648 40.000 0.00 0.00 32.48 3.42
1612 1628 5.244755 TGCTTGTCAATGAACACATAGCTA 58.755 37.500 0.00 0.00 32.48 3.32
1613 1629 4.074259 TGCTTGTCAATGAACACATAGCT 58.926 39.130 0.00 0.00 32.48 3.32
1614 1630 4.424061 TGCTTGTCAATGAACACATAGC 57.576 40.909 0.00 0.00 32.17 2.97
1615 1631 5.344128 GCTTTGCTTGTCAATGAACACATAG 59.656 40.000 0.00 0.00 34.12 2.23
1616 1632 5.221880 GCTTTGCTTGTCAATGAACACATA 58.778 37.500 0.00 0.00 34.12 2.29
1617 1633 4.053295 GCTTTGCTTGTCAATGAACACAT 58.947 39.130 0.00 0.00 34.12 3.21
1618 1634 3.446799 GCTTTGCTTGTCAATGAACACA 58.553 40.909 0.00 0.00 34.12 3.72
1619 1635 2.796593 GGCTTTGCTTGTCAATGAACAC 59.203 45.455 0.00 0.00 34.12 3.32
1620 1636 2.543445 CGGCTTTGCTTGTCAATGAACA 60.543 45.455 0.00 0.00 34.12 3.18
1621 1637 2.053627 CGGCTTTGCTTGTCAATGAAC 58.946 47.619 0.00 0.00 34.12 3.18
1622 1638 1.602668 GCGGCTTTGCTTGTCAATGAA 60.603 47.619 0.00 0.00 34.12 2.57
1623 1639 0.039256 GCGGCTTTGCTTGTCAATGA 60.039 50.000 0.00 0.00 34.12 2.57
1624 1640 0.318869 TGCGGCTTTGCTTGTCAATG 60.319 50.000 0.00 0.00 34.12 2.82
1625 1641 0.388659 TTGCGGCTTTGCTTGTCAAT 59.611 45.000 0.00 0.00 34.12 2.57
1626 1642 0.248990 CTTGCGGCTTTGCTTGTCAA 60.249 50.000 0.00 0.00 35.36 3.18
1627 1643 1.359833 CTTGCGGCTTTGCTTGTCA 59.640 52.632 0.00 0.00 35.36 3.58
1628 1644 2.018324 GCTTGCGGCTTTGCTTGTC 61.018 57.895 0.00 0.00 38.06 3.18
1629 1645 2.028043 GCTTGCGGCTTTGCTTGT 59.972 55.556 0.00 0.00 38.06 3.16
1630 1646 2.027897 TGCTTGCGGCTTTGCTTG 59.972 55.556 0.00 0.00 42.39 4.01
1631 1647 2.028043 GTGCTTGCGGCTTTGCTT 59.972 55.556 0.00 0.00 42.39 3.91
1632 1648 2.295472 TTTGTGCTTGCGGCTTTGCT 62.295 50.000 0.00 0.00 42.39 3.91
1633 1649 1.223417 ATTTGTGCTTGCGGCTTTGC 61.223 50.000 0.00 3.55 42.39 3.68
1634 1650 1.219646 AATTTGTGCTTGCGGCTTTG 58.780 45.000 0.00 0.00 42.39 2.77
1635 1651 1.866601 GAAATTTGTGCTTGCGGCTTT 59.133 42.857 0.00 0.00 42.39 3.51
1636 1652 1.501169 GAAATTTGTGCTTGCGGCTT 58.499 45.000 0.00 0.00 42.39 4.35
1637 1653 0.319813 GGAAATTTGTGCTTGCGGCT 60.320 50.000 0.00 0.00 42.39 5.52
1638 1654 0.319813 AGGAAATTTGTGCTTGCGGC 60.320 50.000 0.00 0.00 42.22 6.53
1639 1655 1.000385 TGAGGAAATTTGTGCTTGCGG 60.000 47.619 0.00 0.00 0.00 5.69
1640 1656 2.420628 TGAGGAAATTTGTGCTTGCG 57.579 45.000 0.00 0.00 0.00 4.85
1641 1657 3.916761 TGATGAGGAAATTTGTGCTTGC 58.083 40.909 0.00 0.00 0.00 4.01
1642 1658 5.107133 GGATGATGAGGAAATTTGTGCTTG 58.893 41.667 0.00 0.00 0.00 4.01
1643 1659 4.142315 CGGATGATGAGGAAATTTGTGCTT 60.142 41.667 0.00 0.00 0.00 3.91
1644 1660 3.379372 CGGATGATGAGGAAATTTGTGCT 59.621 43.478 0.00 0.00 0.00 4.40
1645 1661 3.378112 TCGGATGATGAGGAAATTTGTGC 59.622 43.478 0.00 0.00 0.00 4.57
1646 1662 4.494690 CGTCGGATGATGAGGAAATTTGTG 60.495 45.833 0.00 0.00 32.56 3.33
1647 1663 3.623060 CGTCGGATGATGAGGAAATTTGT 59.377 43.478 0.00 0.00 32.56 2.83
1648 1664 3.871006 TCGTCGGATGATGAGGAAATTTG 59.129 43.478 0.00 0.00 35.21 2.32
1649 1665 4.137116 TCGTCGGATGATGAGGAAATTT 57.863 40.909 0.00 0.00 35.21 1.82
1650 1666 3.819564 TCGTCGGATGATGAGGAAATT 57.180 42.857 0.00 0.00 35.21 1.82
1662 1678 1.138859 TCAGGCAATTCATCGTCGGAT 59.861 47.619 0.00 0.00 0.00 4.18
1663 1679 0.534873 TCAGGCAATTCATCGTCGGA 59.465 50.000 0.00 0.00 0.00 4.55
1664 1680 1.262417 CATCAGGCAATTCATCGTCGG 59.738 52.381 0.00 0.00 0.00 4.79
1665 1681 2.204237 TCATCAGGCAATTCATCGTCG 58.796 47.619 0.00 0.00 0.00 5.12
1666 1682 3.374988 TGTTCATCAGGCAATTCATCGTC 59.625 43.478 0.00 0.00 0.00 4.20
1667 1683 3.346315 TGTTCATCAGGCAATTCATCGT 58.654 40.909 0.00 0.00 0.00 3.73
1668 1684 4.359971 TTGTTCATCAGGCAATTCATCG 57.640 40.909 0.00 0.00 0.00 3.84
1669 1685 6.334989 TCATTTGTTCATCAGGCAATTCATC 58.665 36.000 0.00 0.00 0.00 2.92
1670 1686 6.288941 TCATTTGTTCATCAGGCAATTCAT 57.711 33.333 0.00 0.00 0.00 2.57
1671 1687 5.725325 TCATTTGTTCATCAGGCAATTCA 57.275 34.783 0.00 0.00 0.00 2.57
1672 1688 6.161381 ACTTCATTTGTTCATCAGGCAATTC 58.839 36.000 0.00 0.00 0.00 2.17
1673 1689 6.105397 ACTTCATTTGTTCATCAGGCAATT 57.895 33.333 0.00 0.00 0.00 2.32
1674 1690 5.733620 ACTTCATTTGTTCATCAGGCAAT 57.266 34.783 0.00 0.00 0.00 3.56
1675 1691 5.163426 ACAACTTCATTTGTTCATCAGGCAA 60.163 36.000 0.00 0.00 36.22 4.52
1676 1692 4.341806 ACAACTTCATTTGTTCATCAGGCA 59.658 37.500 0.00 0.00 36.22 4.75
1677 1693 4.682860 CACAACTTCATTTGTTCATCAGGC 59.317 41.667 0.00 0.00 37.62 4.85
1678 1694 5.835257 ACACAACTTCATTTGTTCATCAGG 58.165 37.500 0.00 0.00 37.62 3.86
1679 1695 6.497437 TGACACAACTTCATTTGTTCATCAG 58.503 36.000 0.00 0.00 37.62 2.90
1680 1696 6.448207 TGACACAACTTCATTTGTTCATCA 57.552 33.333 0.00 0.00 37.62 3.07
1681 1697 5.916883 CCTGACACAACTTCATTTGTTCATC 59.083 40.000 0.00 0.00 37.62 2.92
1682 1698 5.593909 TCCTGACACAACTTCATTTGTTCAT 59.406 36.000 0.00 0.00 37.62 2.57
1683 1699 4.946772 TCCTGACACAACTTCATTTGTTCA 59.053 37.500 0.00 0.00 37.62 3.18
1684 1700 5.273944 GTCCTGACACAACTTCATTTGTTC 58.726 41.667 0.00 0.00 37.62 3.18
1685 1701 4.097892 GGTCCTGACACAACTTCATTTGTT 59.902 41.667 0.00 0.00 37.62 2.83
1686 1702 3.632145 GGTCCTGACACAACTTCATTTGT 59.368 43.478 0.00 0.00 40.46 2.83
1687 1703 3.004734 GGGTCCTGACACAACTTCATTTG 59.995 47.826 0.00 0.00 34.14 2.32
1688 1704 3.222603 GGGTCCTGACACAACTTCATTT 58.777 45.455 0.00 0.00 34.14 2.32
1694 1710 1.458777 TCGGGGTCCTGACACAACT 60.459 57.895 1.44 0.00 36.16 3.16
1962 1978 0.253044 TGCTACAGCCTGGATTCACC 59.747 55.000 0.00 0.00 41.18 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.