Multiple sequence alignment - TraesCS2A01G267700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G267700 chr2A 100.000 2386 0 0 1 2386 429130410 429128025 0.000000e+00 4407.0
1 TraesCS2A01G267700 chr2A 84.030 263 30 6 114 365 760474487 760474226 2.370000e-60 243.0
2 TraesCS2A01G267700 chr2A 78.049 410 42 25 1397 1792 256192652 256193027 5.170000e-52 215.0
3 TraesCS2A01G267700 chr2A 87.975 158 2 2 200 342 429130365 429130210 1.130000e-38 171.0
4 TraesCS2A01G267700 chr2A 85.625 160 17 4 46 201 709744571 709744728 1.900000e-36 163.0
5 TraesCS2A01G267700 chr2B 91.357 2233 119 32 200 2386 211156601 211158805 0.000000e+00 2987.0
6 TraesCS2A01G267700 chr2B 86.701 391 32 10 200 586 793281056 793281430 1.320000e-112 416.0
7 TraesCS2A01G267700 chr2B 85.890 163 16 4 45 201 606853932 606854093 1.470000e-37 167.0
8 TraesCS2A01G267700 chr2B 82.000 200 14 4 200 379 606853933 606854130 1.480000e-32 150.0
9 TraesCS2A01G267700 chr2B 92.929 99 5 2 196 294 18321640 18321736 2.470000e-30 143.0
10 TraesCS2A01G267700 chr2B 87.500 120 12 2 729 845 387627582 387627463 4.140000e-28 135.0
11 TraesCS2A01G267700 chr2B 94.737 38 1 1 1614 1650 753103083 753103046 9.210000e-05 58.4
12 TraesCS2A01G267700 chr3B 95.169 1035 43 4 1357 2386 62382772 62383804 0.000000e+00 1628.0
13 TraesCS2A01G267700 chr3B 90.812 653 48 7 423 1068 62359298 62359945 0.000000e+00 863.0
14 TraesCS2A01G267700 chr3B 90.491 326 23 4 356 678 379303836 379304156 7.880000e-115 424.0
15 TraesCS2A01G267700 chr3B 92.481 266 20 0 1064 1329 62382507 62382772 4.810000e-102 381.0
16 TraesCS2A01G267700 chr3B 82.370 346 48 7 46 379 169351216 169351560 3.000000e-74 289.0
17 TraesCS2A01G267700 chr3B 92.553 188 13 1 1103 1290 9188913 9188727 3.910000e-68 268.0
18 TraesCS2A01G267700 chr3B 81.928 332 33 11 1472 1798 563319566 563319257 3.040000e-64 255.0
19 TraesCS2A01G267700 chr3B 79.167 384 47 16 1399 1770 804231784 804231422 3.970000e-58 235.0
20 TraesCS2A01G267700 chr3B 86.765 136 11 4 722 855 50162894 50162764 6.870000e-31 145.0
21 TraesCS2A01G267700 chr1B 94.460 1047 49 8 1340 2386 348054767 348055804 0.000000e+00 1604.0
22 TraesCS2A01G267700 chr1B 88.115 1178 62 19 201 1341 348049052 348050188 0.000000e+00 1328.0
23 TraesCS2A01G267700 chr1B 92.547 161 6 3 47 201 348049052 348049212 2.390000e-55 226.0
24 TraesCS2A01G267700 chr1B 85.135 148 17 3 686 831 8768387 8768243 1.910000e-31 147.0
25 TraesCS2A01G267700 chr1B 88.350 103 11 1 1537 1638 175664052 175664154 3.220000e-24 122.0
26 TraesCS2A01G267700 chr1A 87.130 575 39 14 1842 2386 48876850 48876281 9.370000e-174 619.0
27 TraesCS2A01G267700 chr1D 88.912 487 40 7 200 678 107100008 107100488 2.640000e-164 588.0
28 TraesCS2A01G267700 chr1D 84.211 114 17 1 743 855 489450814 489450701 2.510000e-20 110.0
29 TraesCS2A01G267700 chr3A 89.357 451 40 4 1842 2287 33952486 33952039 5.760000e-156 560.0
30 TraesCS2A01G267700 chr3A 88.789 446 34 8 200 635 557945234 557944795 1.260000e-147 532.0
31 TraesCS2A01G267700 chr3A 93.229 192 12 1 1103 1294 12960542 12960732 5.020000e-72 281.0
32 TraesCS2A01G267700 chr3A 87.500 168 10 7 43 201 739757950 739757785 1.460000e-42 183.0
33 TraesCS2A01G267700 chr3A 94.898 98 5 0 2289 2386 33951871 33951774 1.140000e-33 154.0
34 TraesCS2A01G267700 chr3A 92.157 102 6 2 200 300 477416840 477416940 2.470000e-30 143.0
35 TraesCS2A01G267700 chr3A 91.111 90 8 0 1294 1383 12960945 12961034 3.220000e-24 122.0
36 TraesCS2A01G267700 chr5A 88.985 463 18 10 199 636 119851333 119851787 2.090000e-150 542.0
37 TraesCS2A01G267700 chr5A 90.854 164 6 6 46 201 119851334 119851496 6.680000e-51 211.0
38 TraesCS2A01G267700 chr6B 90.813 283 18 5 356 635 16450803 16451080 2.900000e-99 372.0
39 TraesCS2A01G267700 chr6B 86.047 129 11 4 722 848 55674129 55674006 5.350000e-27 132.0
40 TraesCS2A01G267700 chr6B 90.909 88 8 0 1310 1397 68388670 68388583 4.170000e-23 119.0
41 TraesCS2A01G267700 chr6B 79.082 196 13 13 1124 1294 597998471 597998279 2.510000e-20 110.0
42 TraesCS2A01G267700 chr6B 91.667 48 4 0 1328 1375 127040568 127040615 1.530000e-07 67.6
43 TraesCS2A01G267700 chr7B 85.205 365 26 15 196 560 611910567 611910231 1.360000e-92 350.0
44 TraesCS2A01G267700 chr7B 82.188 320 33 5 180 478 189386943 189386627 1.090000e-63 254.0
45 TraesCS2A01G267700 chr7B 78.182 385 49 18 1399 1770 421703266 421703628 1.860000e-51 213.0
46 TraesCS2A01G267700 chr7B 85.629 167 16 5 41 201 535670324 535670488 4.080000e-38 169.0
47 TraesCS2A01G267700 chr7B 83.750 160 19 5 700 855 421703016 421703172 6.870000e-31 145.0
48 TraesCS2A01G267700 chr7B 86.066 122 12 3 728 845 318870489 318870609 2.490000e-25 126.0
49 TraesCS2A01G267700 chr7B 89.583 48 5 0 1328 1375 555708681 555708634 7.120000e-06 62.1
50 TraesCS2A01G267700 chr7A 88.000 300 14 8 200 478 596704986 596705284 3.800000e-88 335.0
51 TraesCS2A01G267700 chr7A 83.420 193 24 6 40 225 719986684 719986875 3.150000e-39 172.0
52 TraesCS2A01G267700 chr2D 86.926 283 27 6 196 478 234579057 234579329 2.300000e-80 309.0
53 TraesCS2A01G267700 chr2D 94.595 185 9 1 294 478 97622266 97622083 3.880000e-73 285.0
54 TraesCS2A01G267700 chr4D 89.216 204 13 5 479 678 433625632 433625830 1.830000e-61 246.0
55 TraesCS2A01G267700 chr3D 81.311 305 29 10 1496 1795 104120454 104120173 3.090000e-54 222.0
56 TraesCS2A01G267700 chr5B 79.924 264 39 9 1399 1650 548445636 548445897 5.240000e-42 182.0
57 TraesCS2A01G267700 chr5B 87.500 120 12 2 729 845 55032667 55032786 4.140000e-28 135.0
58 TraesCS2A01G267700 chr4A 92.079 101 7 1 200 300 45554826 45554925 8.890000e-30 141.0
59 TraesCS2A01G267700 chr4B 88.350 103 11 1 1537 1638 668458200 668458302 3.220000e-24 122.0
60 TraesCS2A01G267700 chr4B 88.350 103 11 1 1537 1638 668518140 668518242 3.220000e-24 122.0
61 TraesCS2A01G267700 chr4B 88.350 103 11 1 1537 1638 668605807 668605909 3.220000e-24 122.0
62 TraesCS2A01G267700 chr4B 88.350 103 11 1 1537 1638 669159433 669159331 3.220000e-24 122.0
63 TraesCS2A01G267700 chr4B 88.350 103 11 1 1537 1638 669339322 669339220 3.220000e-24 122.0
64 TraesCS2A01G267700 chr4B 87.379 103 12 1 1537 1638 668366613 668366715 1.500000e-22 117.0
65 TraesCS2A01G267700 chr4B 87.379 103 12 1 1537 1638 668976093 668976195 1.500000e-22 117.0
66 TraesCS2A01G267700 chr4B 87.379 103 12 1 1537 1638 669476829 669476931 1.500000e-22 117.0
67 TraesCS2A01G267700 chr7D 85.135 74 11 0 1302 1375 198502005 198502078 2.540000e-10 76.8
68 TraesCS2A01G267700 chr7D 88.462 52 6 0 1328 1379 521894170 521894119 1.980000e-06 63.9
69 TraesCS2A01G267700 chr6A 91.667 48 4 0 1328 1375 71067519 71067566 1.530000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G267700 chr2A 429128025 429130410 2385 True 2289.0 4407 93.9875 1 2386 2 chr2A.!!$R2 2385
1 TraesCS2A01G267700 chr2B 211156601 211158805 2204 False 2987.0 2987 91.3570 200 2386 1 chr2B.!!$F2 2186
2 TraesCS2A01G267700 chr3B 62382507 62383804 1297 False 1004.5 1628 93.8250 1064 2386 2 chr3B.!!$F4 1322
3 TraesCS2A01G267700 chr3B 62359298 62359945 647 False 863.0 863 90.8120 423 1068 1 chr3B.!!$F1 645
4 TraesCS2A01G267700 chr1B 348054767 348055804 1037 False 1604.0 1604 94.4600 1340 2386 1 chr1B.!!$F2 1046
5 TraesCS2A01G267700 chr1B 348049052 348050188 1136 False 777.0 1328 90.3310 47 1341 2 chr1B.!!$F3 1294
6 TraesCS2A01G267700 chr1A 48876281 48876850 569 True 619.0 619 87.1300 1842 2386 1 chr1A.!!$R1 544
7 TraesCS2A01G267700 chr3A 33951774 33952486 712 True 357.0 560 92.1275 1842 2386 2 chr3A.!!$R3 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.179012 TTTTCTTCGTCCCACCACCC 60.179 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1603 0.179045 GGACATGGATGCTTACGCCT 60.179 55.0 0.0 0.0 34.43 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.287373 ACTCCTAATCTCTACTCCTAATAAACG 57.713 37.037 0.00 0.00 0.00 3.60
65 66 9.504708 CTCCTAATCTCTACTCCTAATAAACGA 57.495 37.037 0.00 0.00 0.00 3.85
66 67 9.504708 TCCTAATCTCTACTCCTAATAAACGAG 57.495 37.037 0.00 0.00 0.00 4.18
67 68 9.287373 CCTAATCTCTACTCCTAATAAACGAGT 57.713 37.037 0.00 0.00 40.00 4.18
70 71 7.330900 TCTCTACTCCTAATAAACGAGTTGG 57.669 40.000 0.00 0.00 37.93 3.77
71 72 6.888632 TCTCTACTCCTAATAAACGAGTTGGT 59.111 38.462 0.00 0.00 37.93 3.67
72 73 7.395489 TCTCTACTCCTAATAAACGAGTTGGTT 59.605 37.037 0.00 0.00 37.93 3.67
73 74 7.318141 TCTACTCCTAATAAACGAGTTGGTTG 58.682 38.462 0.00 0.00 37.93 3.77
74 75 6.105397 ACTCCTAATAAACGAGTTGGTTGA 57.895 37.500 0.00 0.00 33.01 3.18
75 76 6.527423 ACTCCTAATAAACGAGTTGGTTGAA 58.473 36.000 0.00 0.00 33.01 2.69
76 77 7.166167 ACTCCTAATAAACGAGTTGGTTGAAT 58.834 34.615 0.00 0.00 33.01 2.57
77 78 8.316214 ACTCCTAATAAACGAGTTGGTTGAATA 58.684 33.333 0.00 0.00 33.01 1.75
78 79 8.712285 TCCTAATAAACGAGTTGGTTGAATAG 57.288 34.615 0.00 0.00 0.00 1.73
79 80 8.316214 TCCTAATAAACGAGTTGGTTGAATAGT 58.684 33.333 0.00 0.00 0.00 2.12
80 81 8.601476 CCTAATAAACGAGTTGGTTGAATAGTC 58.399 37.037 0.00 0.00 0.00 2.59
81 82 6.980051 ATAAACGAGTTGGTTGAATAGTCC 57.020 37.500 0.00 0.00 0.00 3.85
82 83 3.329929 ACGAGTTGGTTGAATAGTCCC 57.670 47.619 0.00 0.00 0.00 4.46
83 84 2.635915 ACGAGTTGGTTGAATAGTCCCA 59.364 45.455 0.00 0.00 0.00 4.37
84 85 3.000727 CGAGTTGGTTGAATAGTCCCAC 58.999 50.000 0.00 0.00 0.00 4.61
85 86 3.344515 GAGTTGGTTGAATAGTCCCACC 58.655 50.000 2.42 2.42 0.00 4.61
86 87 2.714250 AGTTGGTTGAATAGTCCCACCA 59.286 45.455 7.13 7.13 35.33 4.17
87 88 2.817844 GTTGGTTGAATAGTCCCACCAC 59.182 50.000 10.10 4.11 36.35 4.16
88 89 2.344592 TGGTTGAATAGTCCCACCACT 58.655 47.619 7.13 0.00 33.23 4.00
89 90 2.714250 TGGTTGAATAGTCCCACCACTT 59.286 45.455 7.13 0.00 33.23 3.16
90 91 3.139397 TGGTTGAATAGTCCCACCACTTT 59.861 43.478 7.13 0.00 33.23 2.66
91 92 3.756963 GGTTGAATAGTCCCACCACTTTC 59.243 47.826 4.24 0.00 0.00 2.62
92 93 3.328382 TGAATAGTCCCACCACTTTCG 57.672 47.619 0.00 0.00 0.00 3.46
93 94 2.635915 TGAATAGTCCCACCACTTTCGT 59.364 45.455 0.00 0.00 0.00 3.85
94 95 3.259902 GAATAGTCCCACCACTTTCGTC 58.740 50.000 0.00 0.00 0.00 4.20
95 96 2.005370 TAGTCCCACCACTTTCGTCT 57.995 50.000 0.00 0.00 0.00 4.18
96 97 0.393077 AGTCCCACCACTTTCGTCTG 59.607 55.000 0.00 0.00 0.00 3.51
97 98 0.602905 GTCCCACCACTTTCGTCTGG 60.603 60.000 0.00 0.00 0.00 3.86
98 99 1.052124 TCCCACCACTTTCGTCTGGT 61.052 55.000 0.00 0.00 41.78 4.00
99 100 0.602905 CCCACCACTTTCGTCTGGTC 60.603 60.000 0.00 0.00 38.84 4.02
100 101 0.393077 CCACCACTTTCGTCTGGTCT 59.607 55.000 0.00 0.00 38.84 3.85
101 102 1.202651 CCACCACTTTCGTCTGGTCTT 60.203 52.381 0.00 0.00 38.84 3.01
102 103 2.561569 CACCACTTTCGTCTGGTCTTT 58.438 47.619 0.00 0.00 38.84 2.52
103 104 2.943033 CACCACTTTCGTCTGGTCTTTT 59.057 45.455 0.00 0.00 38.84 2.27
104 105 3.377172 CACCACTTTCGTCTGGTCTTTTT 59.623 43.478 0.00 0.00 38.84 1.94
105 106 3.626217 ACCACTTTCGTCTGGTCTTTTTC 59.374 43.478 0.00 0.00 35.80 2.29
106 107 3.303132 CCACTTTCGTCTGGTCTTTTTCG 60.303 47.826 0.00 0.00 0.00 3.46
107 108 3.308866 CACTTTCGTCTGGTCTTTTTCGT 59.691 43.478 0.00 0.00 0.00 3.85
108 109 3.554731 ACTTTCGTCTGGTCTTTTTCGTC 59.445 43.478 0.00 0.00 0.00 4.20
109 110 3.447918 TTCGTCTGGTCTTTTTCGTCT 57.552 42.857 0.00 0.00 0.00 4.18
110 111 2.739292 TCGTCTGGTCTTTTTCGTCTG 58.261 47.619 0.00 0.00 0.00 3.51
111 112 1.792949 CGTCTGGTCTTTTTCGTCTGG 59.207 52.381 0.00 0.00 0.00 3.86
112 113 1.531578 GTCTGGTCTTTTTCGTCTGGC 59.468 52.381 0.00 0.00 0.00 4.85
113 114 1.416401 TCTGGTCTTTTTCGTCTGGCT 59.584 47.619 0.00 0.00 0.00 4.75
114 115 2.158813 TCTGGTCTTTTTCGTCTGGCTT 60.159 45.455 0.00 0.00 0.00 4.35
115 116 2.618709 CTGGTCTTTTTCGTCTGGCTTT 59.381 45.455 0.00 0.00 0.00 3.51
116 117 3.020984 TGGTCTTTTTCGTCTGGCTTTT 58.979 40.909 0.00 0.00 0.00 2.27
117 118 3.445805 TGGTCTTTTTCGTCTGGCTTTTT 59.554 39.130 0.00 0.00 0.00 1.94
137 138 4.950434 TTTTCGTCTGGTTTTTCTTCGT 57.050 36.364 0.00 0.00 0.00 3.85
138 139 4.525411 TTTCGTCTGGTTTTTCTTCGTC 57.475 40.909 0.00 0.00 0.00 4.20
139 140 2.476821 TCGTCTGGTTTTTCTTCGTCC 58.523 47.619 0.00 0.00 0.00 4.79
140 141 1.529865 CGTCTGGTTTTTCTTCGTCCC 59.470 52.381 0.00 0.00 0.00 4.46
141 142 2.567985 GTCTGGTTTTTCTTCGTCCCA 58.432 47.619 0.00 0.00 0.00 4.37
142 143 2.289820 GTCTGGTTTTTCTTCGTCCCAC 59.710 50.000 0.00 0.00 0.00 4.61
143 144 1.607148 CTGGTTTTTCTTCGTCCCACC 59.393 52.381 0.00 0.00 0.00 4.61
144 145 1.064611 TGGTTTTTCTTCGTCCCACCA 60.065 47.619 0.00 0.00 0.00 4.17
145 146 1.335810 GGTTTTTCTTCGTCCCACCAC 59.664 52.381 0.00 0.00 0.00 4.16
146 147 1.335810 GTTTTTCTTCGTCCCACCACC 59.664 52.381 0.00 0.00 0.00 4.61
147 148 0.179012 TTTTCTTCGTCCCACCACCC 60.179 55.000 0.00 0.00 0.00 4.61
148 149 1.057851 TTTCTTCGTCCCACCACCCT 61.058 55.000 0.00 0.00 0.00 4.34
149 150 1.477685 TTCTTCGTCCCACCACCCTC 61.478 60.000 0.00 0.00 0.00 4.30
150 151 2.926242 TTCGTCCCACCACCCTCC 60.926 66.667 0.00 0.00 0.00 4.30
153 154 3.009714 GTCCCACCACCCTCCCTC 61.010 72.222 0.00 0.00 0.00 4.30
154 155 4.348495 TCCCACCACCCTCCCTCC 62.348 72.222 0.00 0.00 0.00 4.30
156 157 4.675303 CCACCACCCTCCCTCCCA 62.675 72.222 0.00 0.00 0.00 4.37
157 158 3.330720 CACCACCCTCCCTCCCAC 61.331 72.222 0.00 0.00 0.00 4.61
158 159 4.677151 ACCACCCTCCCTCCCACC 62.677 72.222 0.00 0.00 0.00 4.61
163 164 2.933834 CCTCCCTCCCACCGGTTT 60.934 66.667 2.97 0.00 0.00 3.27
164 165 2.535331 CCTCCCTCCCACCGGTTTT 61.535 63.158 2.97 0.00 0.00 2.43
165 166 1.002502 CTCCCTCCCACCGGTTTTC 60.003 63.158 2.97 0.00 0.00 2.29
166 167 2.035155 CCCTCCCACCGGTTTTCC 59.965 66.667 2.97 0.00 0.00 3.13
167 168 2.535331 CCCTCCCACCGGTTTTCCT 61.535 63.158 2.97 0.00 37.95 3.36
168 169 1.002502 CCTCCCACCGGTTTTCCTC 60.003 63.158 2.97 0.00 37.95 3.71
169 170 1.489560 CCTCCCACCGGTTTTCCTCT 61.490 60.000 2.97 0.00 37.95 3.69
170 171 0.400594 CTCCCACCGGTTTTCCTCTT 59.599 55.000 2.97 0.00 37.95 2.85
171 172 0.848053 TCCCACCGGTTTTCCTCTTT 59.152 50.000 2.97 0.00 37.95 2.52
172 173 1.215924 TCCCACCGGTTTTCCTCTTTT 59.784 47.619 2.97 0.00 37.95 2.27
173 174 1.611977 CCCACCGGTTTTCCTCTTTTC 59.388 52.381 2.97 0.00 37.95 2.29
174 175 2.583143 CCACCGGTTTTCCTCTTTTCT 58.417 47.619 2.97 0.00 37.95 2.52
175 176 2.552743 CCACCGGTTTTCCTCTTTTCTC 59.447 50.000 2.97 0.00 37.95 2.87
176 177 2.223377 CACCGGTTTTCCTCTTTTCTCG 59.777 50.000 2.97 0.00 37.95 4.04
177 178 2.158856 ACCGGTTTTCCTCTTTTCTCGT 60.159 45.455 0.00 0.00 37.95 4.18
178 179 2.479275 CCGGTTTTCCTCTTTTCTCGTC 59.521 50.000 0.00 0.00 37.95 4.20
179 180 3.391049 CGGTTTTCCTCTTTTCTCGTCT 58.609 45.455 0.00 0.00 37.95 4.18
180 181 3.184581 CGGTTTTCCTCTTTTCTCGTCTG 59.815 47.826 0.00 0.00 37.95 3.51
181 182 3.498777 GGTTTTCCTCTTTTCTCGTCTGG 59.501 47.826 0.00 0.00 36.94 3.86
182 183 2.457366 TTCCTCTTTTCTCGTCTGGC 57.543 50.000 0.00 0.00 0.00 4.85
183 184 0.608640 TCCTCTTTTCTCGTCTGGCC 59.391 55.000 0.00 0.00 0.00 5.36
184 185 0.737715 CCTCTTTTCTCGTCTGGCCG 60.738 60.000 0.00 0.00 0.00 6.13
185 186 0.737715 CTCTTTTCTCGTCTGGCCGG 60.738 60.000 4.71 4.71 0.00 6.13
186 187 2.358247 TTTTCTCGTCTGGCCGGC 60.358 61.111 21.18 21.18 0.00 6.13
187 188 3.171828 TTTTCTCGTCTGGCCGGCA 62.172 57.895 30.85 13.75 0.00 5.69
188 189 2.668185 TTTTCTCGTCTGGCCGGCAA 62.668 55.000 30.85 18.34 0.00 4.52
189 190 2.463589 TTTCTCGTCTGGCCGGCAAT 62.464 55.000 30.85 0.00 0.00 3.56
190 191 1.609635 TTCTCGTCTGGCCGGCAATA 61.610 55.000 30.85 6.84 0.00 1.90
191 192 1.883084 CTCGTCTGGCCGGCAATAC 60.883 63.158 30.85 19.63 0.00 1.89
192 193 2.895372 CGTCTGGCCGGCAATACC 60.895 66.667 30.85 11.16 0.00 2.73
193 194 2.516225 GTCTGGCCGGCAATACCC 60.516 66.667 30.85 10.31 33.26 3.69
194 195 3.012119 TCTGGCCGGCAATACCCA 61.012 61.111 30.85 14.92 33.26 4.51
195 196 2.044451 CTGGCCGGCAATACCCAA 60.044 61.111 30.85 1.39 33.26 4.12
196 197 2.361865 TGGCCGGCAATACCCAAC 60.362 61.111 30.85 7.78 33.26 3.77
197 198 3.514362 GGCCGGCAATACCCAACG 61.514 66.667 30.85 0.00 33.26 4.10
198 199 2.748647 GCCGGCAATACCCAACGT 60.749 61.111 24.80 0.00 33.26 3.99
199 200 1.449956 GCCGGCAATACCCAACGTA 60.450 57.895 24.80 0.00 33.26 3.57
200 201 0.816421 GCCGGCAATACCCAACGTAT 60.816 55.000 24.80 0.00 39.47 3.06
201 202 1.223187 CCGGCAATACCCAACGTATC 58.777 55.000 0.00 0.00 36.61 2.24
202 203 1.202604 CCGGCAATACCCAACGTATCT 60.203 52.381 0.00 0.00 36.61 1.98
203 204 2.132762 CGGCAATACCCAACGTATCTC 58.867 52.381 0.00 0.00 36.61 2.75
204 205 2.223971 CGGCAATACCCAACGTATCTCT 60.224 50.000 0.00 0.00 36.61 3.10
205 206 3.005050 CGGCAATACCCAACGTATCTCTA 59.995 47.826 0.00 0.00 36.61 2.43
206 207 4.304939 GGCAATACCCAACGTATCTCTAC 58.695 47.826 0.00 0.00 36.61 2.59
207 208 4.038883 GGCAATACCCAACGTATCTCTACT 59.961 45.833 0.00 0.00 36.61 2.57
208 209 5.221130 GCAATACCCAACGTATCTCTACTC 58.779 45.833 0.00 0.00 36.61 2.59
209 210 5.770417 CAATACCCAACGTATCTCTACTCC 58.230 45.833 0.00 0.00 36.61 3.85
214 215 6.845908 ACCCAACGTATCTCTACTCCTAATA 58.154 40.000 0.00 0.00 0.00 0.98
253 254 1.450211 CCACCACTTTCGTCTGGGT 59.550 57.895 0.00 0.00 0.00 4.51
441 464 9.561069 AGTAATAAATCAATCCAGATGTGGTAC 57.439 33.333 9.03 0.22 45.28 3.34
445 468 0.180406 AATCCAGATGTGGTACGGCC 59.820 55.000 9.03 0.00 45.28 6.13
507 531 4.185286 GTACGCCCCACCCCATCC 62.185 72.222 0.00 0.00 0.00 3.51
513 537 3.941188 CCCACCCCATCCGATCGG 61.941 72.222 28.62 28.62 0.00 4.18
526 550 1.382695 GATCGGAGGTCTCCCCCAA 60.383 63.158 11.08 0.00 46.96 4.12
527 551 0.764752 GATCGGAGGTCTCCCCCAAT 60.765 60.000 11.08 1.03 46.96 3.16
546 570 2.969827 CACGCCCCACCCATTTTC 59.030 61.111 0.00 0.00 0.00 2.29
558 582 0.704076 CCATTTTCCCCACCTCCTGA 59.296 55.000 0.00 0.00 0.00 3.86
559 583 1.288932 CCATTTTCCCCACCTCCTGAT 59.711 52.381 0.00 0.00 0.00 2.90
560 584 2.659428 CATTTTCCCCACCTCCTGATC 58.341 52.381 0.00 0.00 0.00 2.92
575 599 5.114764 TCCTGATCATTTGGCAAGTGATA 57.885 39.130 30.45 16.97 33.03 2.15
604 631 2.623889 CACGTAATTCCCCCACACAAAA 59.376 45.455 0.00 0.00 0.00 2.44
702 731 4.755411 CTCAGCGTCCTGGTCTAATTTTA 58.245 43.478 0.00 0.00 39.61 1.52
790 825 4.741239 GCCCACCTCCTCCCTCCA 62.741 72.222 0.00 0.00 0.00 3.86
915 950 2.388735 ACATAGCCGAGGTGAAGATGA 58.611 47.619 0.00 0.00 0.00 2.92
987 1022 2.751436 TCGTACCCGCGCTAGGTT 60.751 61.111 22.09 0.17 38.89 3.50
1168 1210 0.909610 TGGATCGGCAAGTTCCTCCT 60.910 55.000 9.13 0.00 39.07 3.69
1169 1211 1.120530 GGATCGGCAAGTTCCTCCTA 58.879 55.000 0.00 0.00 36.13 2.94
1187 1229 2.357637 CCTAGTCTTCAAGAGCCTCTCG 59.642 54.545 0.00 0.00 35.36 4.04
1200 1251 0.651551 CCTCTCGAACTACGACCTCG 59.348 60.000 0.00 0.00 46.45 4.63
1464 1539 1.048601 AGATCCAGTCGTGGTTGTGT 58.951 50.000 0.00 0.00 45.28 3.72
1467 1542 1.153249 CCAGTCGTGGTTGTGTGGT 60.153 57.895 0.00 0.00 39.30 4.16
1530 1605 5.701290 CCGGTAGAGGCTTATTTTTCATAGG 59.299 44.000 0.00 0.00 0.00 2.57
1551 1629 3.297830 CGTAAGCATCCATGTCCGATA 57.702 47.619 0.00 0.00 0.00 2.92
1561 1639 3.876914 TCCATGTCCGATAGTGCAAATTC 59.123 43.478 0.00 0.00 0.00 2.17
1672 1750 5.095490 GGTAATTTTCTGTTCAATCTGCCG 58.905 41.667 0.00 0.00 0.00 5.69
1682 1760 2.989909 TCAATCTGCCGTTGATCATGT 58.010 42.857 0.00 0.00 31.07 3.21
1684 1762 4.512484 TCAATCTGCCGTTGATCATGTTA 58.488 39.130 0.00 0.00 31.07 2.41
1756 1834 7.755373 GCTCCTTTTTCCAATCACAATACTTAC 59.245 37.037 0.00 0.00 0.00 2.34
1770 1848 1.912417 ACTTACGTGTGGAGAGCTCT 58.088 50.000 18.28 18.28 0.00 4.09
1866 1944 7.643528 AGCTCATATGTGTATGTGATTAACG 57.356 36.000 1.90 0.00 39.01 3.18
1952 2030 2.902486 TGCCCATCTATCTTGGCTAGAG 59.098 50.000 4.72 0.00 44.32 2.43
2070 2152 7.944729 ATGTTACATAAAGTGGAAAGCATCT 57.055 32.000 0.00 0.00 30.80 2.90
2123 2205 6.379988 AGTTTTGAAACCTTTCATGGTGTACT 59.620 34.615 1.35 0.00 45.65 2.73
2166 2248 6.106648 TGCATGAGCTAGAGCATAATAACT 57.893 37.500 4.01 0.00 45.16 2.24
2240 2325 4.790766 GCAGGGACTTAATTCATTGATGCG 60.791 45.833 0.00 0.00 34.60 4.73
2245 2330 5.348418 ACTTAATTCATTGATGCGATCCG 57.652 39.130 0.00 0.00 0.00 4.18
2283 2368 8.962679 AGTACTTGTTTACACCAAGATTTTTCA 58.037 29.630 7.11 0.00 41.44 2.69
2377 2628 2.886523 TGATTGTTCTTGCTTGGACAGG 59.113 45.455 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.287373 CGTTTATTAGGAGTAGAGATTAGGAGT 57.713 37.037 0.00 0.00 0.00 3.85
39 40 9.504708 TCGTTTATTAGGAGTAGAGATTAGGAG 57.495 37.037 0.00 0.00 0.00 3.69
40 41 9.504708 CTCGTTTATTAGGAGTAGAGATTAGGA 57.495 37.037 0.00 0.00 34.73 2.94
56 57 7.550196 GGGACTATTCAACCAACTCGTTTATTA 59.450 37.037 0.00 0.00 0.00 0.98
57 58 6.373495 GGGACTATTCAACCAACTCGTTTATT 59.627 38.462 0.00 0.00 0.00 1.40
58 59 5.878669 GGGACTATTCAACCAACTCGTTTAT 59.121 40.000 0.00 0.00 0.00 1.40
59 60 5.221682 TGGGACTATTCAACCAACTCGTTTA 60.222 40.000 0.00 0.00 0.00 2.01
60 61 4.070009 GGGACTATTCAACCAACTCGTTT 58.930 43.478 0.00 0.00 0.00 3.60
61 62 3.071892 TGGGACTATTCAACCAACTCGTT 59.928 43.478 0.00 0.00 0.00 3.85
62 63 2.635915 TGGGACTATTCAACCAACTCGT 59.364 45.455 0.00 0.00 0.00 4.18
63 64 3.000727 GTGGGACTATTCAACCAACTCG 58.999 50.000 0.00 0.00 34.26 4.18
64 65 3.244770 TGGTGGGACTATTCAACCAACTC 60.245 47.826 0.00 0.00 41.27 3.01
65 66 2.714250 TGGTGGGACTATTCAACCAACT 59.286 45.455 0.00 0.00 41.27 3.16
66 67 2.817844 GTGGTGGGACTATTCAACCAAC 59.182 50.000 8.03 0.00 40.12 3.77
67 68 2.714250 AGTGGTGGGACTATTCAACCAA 59.286 45.455 8.03 0.00 40.12 3.67
68 69 2.344592 AGTGGTGGGACTATTCAACCA 58.655 47.619 3.57 3.57 37.57 3.67
69 70 3.434940 AAGTGGTGGGACTATTCAACC 57.565 47.619 0.00 0.00 32.80 3.77
70 71 3.435671 CGAAAGTGGTGGGACTATTCAAC 59.564 47.826 0.00 0.00 0.00 3.18
71 72 3.071892 ACGAAAGTGGTGGGACTATTCAA 59.928 43.478 0.00 0.00 46.97 2.69
72 73 2.635915 ACGAAAGTGGTGGGACTATTCA 59.364 45.455 0.00 0.00 46.97 2.57
73 74 3.329929 ACGAAAGTGGTGGGACTATTC 57.670 47.619 0.00 0.00 46.97 1.75
87 88 3.802685 AGACGAAAAAGACCAGACGAAAG 59.197 43.478 0.00 0.00 0.00 2.62
88 89 3.554324 CAGACGAAAAAGACCAGACGAAA 59.446 43.478 0.00 0.00 0.00 3.46
89 90 3.120792 CAGACGAAAAAGACCAGACGAA 58.879 45.455 0.00 0.00 0.00 3.85
90 91 2.545113 CCAGACGAAAAAGACCAGACGA 60.545 50.000 0.00 0.00 0.00 4.20
91 92 1.792949 CCAGACGAAAAAGACCAGACG 59.207 52.381 0.00 0.00 0.00 4.18
92 93 1.531578 GCCAGACGAAAAAGACCAGAC 59.468 52.381 0.00 0.00 0.00 3.51
93 94 1.416401 AGCCAGACGAAAAAGACCAGA 59.584 47.619 0.00 0.00 0.00 3.86
94 95 1.884235 AGCCAGACGAAAAAGACCAG 58.116 50.000 0.00 0.00 0.00 4.00
95 96 2.341846 AAGCCAGACGAAAAAGACCA 57.658 45.000 0.00 0.00 0.00 4.02
96 97 3.710326 AAAAGCCAGACGAAAAAGACC 57.290 42.857 0.00 0.00 0.00 3.85
115 116 5.299582 ACGAAGAAAAACCAGACGAAAAA 57.700 34.783 0.00 0.00 0.00 1.94
116 117 4.201841 GGACGAAGAAAAACCAGACGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
117 118 3.310501 GGACGAAGAAAAACCAGACGAAA 59.689 43.478 0.00 0.00 0.00 3.46
118 119 2.867975 GGACGAAGAAAAACCAGACGAA 59.132 45.455 0.00 0.00 0.00 3.85
119 120 2.476821 GGACGAAGAAAAACCAGACGA 58.523 47.619 0.00 0.00 0.00 4.20
120 121 1.529865 GGGACGAAGAAAAACCAGACG 59.470 52.381 0.00 0.00 0.00 4.18
121 122 2.289820 GTGGGACGAAGAAAAACCAGAC 59.710 50.000 0.00 0.00 0.00 3.51
122 123 2.567985 GTGGGACGAAGAAAAACCAGA 58.432 47.619 0.00 0.00 0.00 3.86
123 124 1.607148 GGTGGGACGAAGAAAAACCAG 59.393 52.381 0.00 0.00 0.00 4.00
124 125 1.064611 TGGTGGGACGAAGAAAAACCA 60.065 47.619 0.00 0.00 33.95 3.67
125 126 1.335810 GTGGTGGGACGAAGAAAAACC 59.664 52.381 0.00 0.00 0.00 3.27
126 127 1.335810 GGTGGTGGGACGAAGAAAAAC 59.664 52.381 0.00 0.00 0.00 2.43
127 128 1.682740 GGTGGTGGGACGAAGAAAAA 58.317 50.000 0.00 0.00 0.00 1.94
128 129 0.179012 GGGTGGTGGGACGAAGAAAA 60.179 55.000 0.00 0.00 0.00 2.29
129 130 1.057851 AGGGTGGTGGGACGAAGAAA 61.058 55.000 0.00 0.00 0.00 2.52
130 131 1.460689 AGGGTGGTGGGACGAAGAA 60.461 57.895 0.00 0.00 0.00 2.52
131 132 1.911766 GAGGGTGGTGGGACGAAGA 60.912 63.158 0.00 0.00 0.00 2.87
132 133 2.663196 GAGGGTGGTGGGACGAAG 59.337 66.667 0.00 0.00 0.00 3.79
133 134 2.926242 GGAGGGTGGTGGGACGAA 60.926 66.667 0.00 0.00 0.00 3.85
136 137 3.009714 GAGGGAGGGTGGTGGGAC 61.010 72.222 0.00 0.00 0.00 4.46
137 138 4.348495 GGAGGGAGGGTGGTGGGA 62.348 72.222 0.00 0.00 0.00 4.37
139 140 4.675303 TGGGAGGGAGGGTGGTGG 62.675 72.222 0.00 0.00 0.00 4.61
140 141 3.330720 GTGGGAGGGAGGGTGGTG 61.331 72.222 0.00 0.00 0.00 4.17
141 142 4.677151 GGTGGGAGGGAGGGTGGT 62.677 72.222 0.00 0.00 0.00 4.16
146 147 2.479820 GAAAACCGGTGGGAGGGAGG 62.480 65.000 8.52 0.00 36.97 4.30
147 148 1.002502 GAAAACCGGTGGGAGGGAG 60.003 63.158 8.52 0.00 36.97 4.30
148 149 2.531601 GGAAAACCGGTGGGAGGGA 61.532 63.158 8.52 0.00 36.97 4.20
149 150 2.035155 GGAAAACCGGTGGGAGGG 59.965 66.667 8.52 0.00 36.97 4.30
150 151 1.002502 GAGGAAAACCGGTGGGAGG 60.003 63.158 8.52 0.00 36.97 4.30
151 152 0.400594 AAGAGGAAAACCGGTGGGAG 59.599 55.000 8.52 0.00 36.97 4.30
152 153 0.848053 AAAGAGGAAAACCGGTGGGA 59.152 50.000 8.52 0.00 36.97 4.37
153 154 1.611977 GAAAAGAGGAAAACCGGTGGG 59.388 52.381 8.52 0.00 40.11 4.61
154 155 2.552743 GAGAAAAGAGGAAAACCGGTGG 59.447 50.000 8.52 0.00 0.00 4.61
155 156 2.223377 CGAGAAAAGAGGAAAACCGGTG 59.777 50.000 8.52 0.00 0.00 4.94
156 157 2.158856 ACGAGAAAAGAGGAAAACCGGT 60.159 45.455 0.00 0.00 0.00 5.28
157 158 2.479275 GACGAGAAAAGAGGAAAACCGG 59.521 50.000 0.00 0.00 0.00 5.28
158 159 3.184581 CAGACGAGAAAAGAGGAAAACCG 59.815 47.826 0.00 0.00 0.00 4.44
159 160 3.498777 CCAGACGAGAAAAGAGGAAAACC 59.501 47.826 0.00 0.00 0.00 3.27
160 161 3.058846 GCCAGACGAGAAAAGAGGAAAAC 60.059 47.826 0.00 0.00 0.00 2.43
161 162 3.139077 GCCAGACGAGAAAAGAGGAAAA 58.861 45.455 0.00 0.00 0.00 2.29
162 163 2.550208 GGCCAGACGAGAAAAGAGGAAA 60.550 50.000 0.00 0.00 0.00 3.13
163 164 1.002087 GGCCAGACGAGAAAAGAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
164 165 0.608640 GGCCAGACGAGAAAAGAGGA 59.391 55.000 0.00 0.00 0.00 3.71
165 166 0.737715 CGGCCAGACGAGAAAAGAGG 60.738 60.000 2.24 0.00 35.47 3.69
166 167 0.737715 CCGGCCAGACGAGAAAAGAG 60.738 60.000 2.24 0.00 35.47 2.85
167 168 1.292223 CCGGCCAGACGAGAAAAGA 59.708 57.895 2.24 0.00 35.47 2.52
168 169 2.391389 GCCGGCCAGACGAGAAAAG 61.391 63.158 18.11 0.00 35.47 2.27
169 170 2.358247 GCCGGCCAGACGAGAAAA 60.358 61.111 18.11 0.00 35.47 2.29
170 171 2.463589 ATTGCCGGCCAGACGAGAAA 62.464 55.000 26.77 8.43 35.47 2.52
171 172 1.609635 TATTGCCGGCCAGACGAGAA 61.610 55.000 26.77 9.27 35.47 2.87
172 173 2.055633 TATTGCCGGCCAGACGAGA 61.056 57.895 26.77 0.00 35.47 4.04
173 174 1.883084 GTATTGCCGGCCAGACGAG 60.883 63.158 26.77 0.00 35.47 4.18
174 175 2.185867 GTATTGCCGGCCAGACGA 59.814 61.111 26.77 0.00 35.47 4.20
175 176 2.895372 GGTATTGCCGGCCAGACG 60.895 66.667 26.77 0.00 0.00 4.18
176 177 2.516225 GGGTATTGCCGGCCAGAC 60.516 66.667 26.77 21.17 38.44 3.51
177 178 2.607568 TTGGGTATTGCCGGCCAGA 61.608 57.895 26.77 7.59 38.44 3.86
178 179 2.044451 TTGGGTATTGCCGGCCAG 60.044 61.111 26.77 0.00 38.44 4.85
179 180 2.361865 GTTGGGTATTGCCGGCCA 60.362 61.111 26.77 15.07 38.44 5.36
180 181 2.872931 TACGTTGGGTATTGCCGGCC 62.873 60.000 26.77 8.13 38.44 6.13
181 182 0.816421 ATACGTTGGGTATTGCCGGC 60.816 55.000 22.73 22.73 38.73 6.13
182 183 1.202604 AGATACGTTGGGTATTGCCGG 60.203 52.381 0.00 0.00 41.91 6.13
183 184 2.132762 GAGATACGTTGGGTATTGCCG 58.867 52.381 0.00 0.00 41.91 5.69
184 185 3.470645 AGAGATACGTTGGGTATTGCC 57.529 47.619 0.00 0.00 41.91 4.52
185 186 5.197682 AGTAGAGATACGTTGGGTATTGC 57.802 43.478 0.00 0.00 41.91 3.56
186 187 5.535406 AGGAGTAGAGATACGTTGGGTATTG 59.465 44.000 0.00 0.00 41.91 1.90
187 188 5.703310 AGGAGTAGAGATACGTTGGGTATT 58.297 41.667 0.00 0.00 41.91 1.89
188 189 5.321934 AGGAGTAGAGATACGTTGGGTAT 57.678 43.478 0.00 0.00 44.52 2.73
189 190 4.785346 AGGAGTAGAGATACGTTGGGTA 57.215 45.455 0.00 0.00 35.11 3.69
190 191 3.666345 AGGAGTAGAGATACGTTGGGT 57.334 47.619 0.00 0.00 0.00 4.51
191 192 7.119553 GTCTATTAGGAGTAGAGATACGTTGGG 59.880 44.444 0.00 0.00 0.00 4.12
192 193 7.148606 CGTCTATTAGGAGTAGAGATACGTTGG 60.149 44.444 0.00 0.00 0.00 3.77
193 194 7.598118 TCGTCTATTAGGAGTAGAGATACGTTG 59.402 40.741 0.00 0.00 0.00 4.10
194 195 7.665690 TCGTCTATTAGGAGTAGAGATACGTT 58.334 38.462 0.00 0.00 0.00 3.99
195 196 7.225784 TCGTCTATTAGGAGTAGAGATACGT 57.774 40.000 0.00 0.00 0.00 3.57
196 197 7.745022 CTCGTCTATTAGGAGTAGAGATACG 57.255 44.000 0.00 0.00 35.74 3.06
206 207 5.578005 TCAACCAACTCGTCTATTAGGAG 57.422 43.478 0.00 0.00 44.15 3.69
207 208 5.988310 TTCAACCAACTCGTCTATTAGGA 57.012 39.130 0.00 0.00 0.00 2.94
208 209 7.490000 ACTATTCAACCAACTCGTCTATTAGG 58.510 38.462 0.00 0.00 0.00 2.69
209 210 7.648510 GGACTATTCAACCAACTCGTCTATTAG 59.351 40.741 0.00 0.00 0.00 1.73
214 215 3.056035 GGGACTATTCAACCAACTCGTCT 60.056 47.826 0.00 0.00 0.00 4.18
367 390 7.720957 TCTGAGTTTATAGCCTTACCATACGTA 59.279 37.037 0.00 0.00 0.00 3.57
526 550 3.903281 AAATGGGTGGGGCGTGCAT 62.903 57.895 0.00 0.00 0.00 3.96
527 551 4.612279 AAATGGGTGGGGCGTGCA 62.612 61.111 0.00 0.00 0.00 4.57
546 570 1.410648 CCAAATGATCAGGAGGTGGGG 60.411 57.143 0.09 0.00 0.00 4.96
558 582 8.479689 TGATTGAATTATCACTTGCCAAATGAT 58.520 29.630 6.62 6.62 34.61 2.45
559 583 7.760794 GTGATTGAATTATCACTTGCCAAATGA 59.239 33.333 12.28 0.00 46.94 2.57
560 584 7.902032 GTGATTGAATTATCACTTGCCAAATG 58.098 34.615 12.28 0.00 46.94 2.32
575 599 4.401202 GTGGGGGAATTACGTGATTGAATT 59.599 41.667 10.64 1.37 0.00 2.17
628 657 9.624037 ATGGTAATGTGGGTAATAAGGAGTATA 57.376 33.333 0.00 0.00 0.00 1.47
632 661 7.287061 TGAATGGTAATGTGGGTAATAAGGAG 58.713 38.462 0.00 0.00 0.00 3.69
642 671 4.280819 AGGTGATTGAATGGTAATGTGGG 58.719 43.478 0.00 0.00 0.00 4.61
718 747 0.107508 GCAGCTAGGGCATTCTCACA 60.108 55.000 0.00 0.00 41.70 3.58
790 825 1.075748 ATTACTCGGCGGTAGGGGT 60.076 57.895 7.21 0.00 0.00 4.95
915 950 4.922026 GGGTGACCGTGCCGTTGT 62.922 66.667 0.00 0.00 43.64 3.32
950 985 3.035576 CTGACGCGCCACTACTCGA 62.036 63.158 5.73 0.00 0.00 4.04
955 990 4.111016 CGACCTGACGCGCCACTA 62.111 66.667 5.73 0.00 0.00 2.74
987 1022 3.353029 CGCATGGTGTTGGCGTCA 61.353 61.111 0.00 0.00 45.27 4.35
1168 1210 3.351794 TCGAGAGGCTCTTGAAGACTA 57.648 47.619 28.32 8.10 46.41 2.59
1200 1251 4.736896 GTCGGCGGTGAGGTCCAC 62.737 72.222 7.21 0.00 44.95 4.02
1307 1382 3.119193 CACGTGTTGGCCAGCTTT 58.881 55.556 21.11 1.70 0.00 3.51
1383 1458 2.285368 AGGGGCGTTGGATCCTCA 60.285 61.111 14.23 0.00 0.00 3.86
1464 1539 2.061509 TGGATTCGTCCGAGATACCA 57.938 50.000 0.00 0.00 0.00 3.25
1518 1593 6.058833 TGGATGCTTACGCCTATGAAAAATA 58.941 36.000 0.00 0.00 34.43 1.40
1519 1594 4.887071 TGGATGCTTACGCCTATGAAAAAT 59.113 37.500 0.00 0.00 34.43 1.82
1524 1599 2.368548 ACATGGATGCTTACGCCTATGA 59.631 45.455 0.00 0.00 34.43 2.15
1525 1600 2.738846 GACATGGATGCTTACGCCTATG 59.261 50.000 0.00 0.00 34.43 2.23
1526 1601 2.289694 GGACATGGATGCTTACGCCTAT 60.290 50.000 0.00 0.00 34.43 2.57
1527 1602 1.070134 GGACATGGATGCTTACGCCTA 59.930 52.381 0.00 0.00 34.43 3.93
1528 1603 0.179045 GGACATGGATGCTTACGCCT 60.179 55.000 0.00 0.00 34.43 5.52
1530 1605 0.529773 TCGGACATGGATGCTTACGC 60.530 55.000 0.00 0.00 0.00 4.42
1551 1629 1.615392 GAACCAGCCAGAATTTGCACT 59.385 47.619 0.00 0.00 0.00 4.40
1561 1639 2.757099 GCCCATGGAACCAGCCAG 60.757 66.667 15.22 0.00 42.15 4.85
1756 1834 2.125753 GCCAGAGCTCTCCACACG 60.126 66.667 14.96 0.78 35.50 4.49
1866 1944 4.378046 CCGTGTGTGTTAAACTGCTAATCC 60.378 45.833 0.00 0.00 0.00 3.01
2051 2129 7.944729 ACATTAGATGCTTTCCACTTTATGT 57.055 32.000 0.00 0.00 0.00 2.29
2070 2152 5.766174 GGGATTCTTAATTGCCCGTACATTA 59.234 40.000 0.00 0.00 0.00 1.90
2123 2205 5.370679 TGCATGCTGAAGAGAATTATGCTA 58.629 37.500 20.33 0.00 39.91 3.49
2166 2248 6.252995 ACTGGCTTCCCTAAATATTTGACAA 58.747 36.000 11.05 0.00 0.00 3.18
2240 2325 6.262720 ACAAGTACTCCTACAAGATACGGATC 59.737 42.308 0.00 0.00 0.00 3.36
2245 2330 9.351570 GTGTAAACAAGTACTCCTACAAGATAC 57.648 37.037 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.