Multiple sequence alignment - TraesCS2A01G267400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G267400 chr2A 100.000 6611 0 0 1 6611 426382129 426375519 0.000000e+00 12209.0
1 TraesCS2A01G267400 chr2A 97.772 404 8 1 2956 3359 488386304 488386706 0.000000e+00 695.0
2 TraesCS2A01G267400 chr2A 97.500 400 10 0 2955 3354 39550686 39551085 0.000000e+00 684.0
3 TraesCS2A01G267400 chr2A 96.790 405 13 0 2955 3359 745855839 745855435 0.000000e+00 676.0
4 TraesCS2A01G267400 chr2B 94.567 1767 55 10 3629 5395 362020374 362022099 0.000000e+00 2693.0
5 TraesCS2A01G267400 chr2B 98.129 1229 19 3 625 1853 362017970 362019194 0.000000e+00 2139.0
6 TraesCS2A01G267400 chr2B 94.750 1219 55 8 5397 6610 362022135 362023349 0.000000e+00 1888.0
7 TraesCS2A01G267400 chr2B 96.407 1002 27 6 1864 2859 362019290 362020288 0.000000e+00 1642.0
8 TraesCS2A01G267400 chr2B 85.590 229 30 2 4 230 136170414 136170187 3.080000e-58 237.0
9 TraesCS2A01G267400 chr2B 85.366 123 11 3 411 526 94937387 94937265 3.240000e-23 121.0
10 TraesCS2A01G267400 chr2B 85.000 120 14 2 411 526 503979579 503979460 1.160000e-22 119.0
11 TraesCS2A01G267400 chr2B 97.436 39 0 1 2745 2783 362020283 362020320 1.540000e-06 65.8
12 TraesCS2A01G267400 chr2D 96.740 1503 38 4 364 1856 310305751 310304250 0.000000e+00 2494.0
13 TraesCS2A01G267400 chr2D 95.745 1034 27 7 1864 2893 310304155 310303135 0.000000e+00 1650.0
14 TraesCS2A01G267400 chr2D 94.967 1053 29 10 5397 6442 310301169 310300134 0.000000e+00 1629.0
15 TraesCS2A01G267400 chr2D 97.616 923 15 2 4474 5395 310302121 310301205 0.000000e+00 1576.0
16 TraesCS2A01G267400 chr2D 91.313 1036 52 19 3417 4441 310303131 310302123 0.000000e+00 1380.0
17 TraesCS2A01G267400 chr2D 86.174 311 41 2 1 309 310306285 310305975 1.060000e-87 335.0
18 TraesCS2A01G267400 chr2D 90.698 86 6 2 4430 4514 503850757 503850673 5.420000e-21 113.0
19 TraesCS2A01G267400 chr5A 97.789 407 9 0 2953 3359 216939948 216940354 0.000000e+00 702.0
20 TraesCS2A01G267400 chr5A 97.243 399 11 0 2961 3359 516069546 516069944 0.000000e+00 676.0
21 TraesCS2A01G267400 chr5A 85.484 124 11 3 413 530 53309500 53309622 9.000000e-24 122.0
22 TraesCS2A01G267400 chr7A 95.392 434 20 0 2924 3357 181709209 181708776 0.000000e+00 691.0
23 TraesCS2A01G267400 chr7A 95.745 423 15 2 2953 3374 266658568 266658148 0.000000e+00 678.0
24 TraesCS2A01G267400 chr7A 91.111 90 7 1 4430 4518 97021735 97021646 3.240000e-23 121.0
25 TraesCS2A01G267400 chr7A 89.535 86 9 0 4430 4515 56727785 56727700 7.010000e-20 110.0
26 TraesCS2A01G267400 chr7A 95.000 40 2 0 3671 3710 619168760 619168721 5.530000e-06 63.9
27 TraesCS2A01G267400 chr4A 97.007 401 12 0 2959 3359 527179118 527178718 0.000000e+00 675.0
28 TraesCS2A01G267400 chr3A 95.724 421 14 4 2939 3359 516778970 516778554 0.000000e+00 675.0
29 TraesCS2A01G267400 chr3A 86.047 215 29 1 1 215 375018054 375018267 5.160000e-56 230.0
30 TraesCS2A01G267400 chr3A 85.849 106 15 0 6189 6294 65997547 65997652 5.420000e-21 113.0
31 TraesCS2A01G267400 chr4D 86.916 214 26 2 1 214 65944204 65944415 8.570000e-59 239.0
32 TraesCS2A01G267400 chr4D 84.956 226 29 4 4 229 351574161 351573941 2.400000e-54 224.0
33 TraesCS2A01G267400 chr4D 96.226 53 2 0 3348 3400 286963431 286963483 3.280000e-13 87.9
34 TraesCS2A01G267400 chr4D 96.226 53 2 0 3348 3400 441294095 441294147 3.280000e-13 87.9
35 TraesCS2A01G267400 chr3D 86.574 216 27 2 1 215 305862635 305862849 3.080000e-58 237.0
36 TraesCS2A01G267400 chr3D 86.603 209 27 1 4 212 313292564 313292357 5.160000e-56 230.0
37 TraesCS2A01G267400 chr3D 88.298 94 10 1 4430 4523 589151822 589151730 1.950000e-20 111.0
38 TraesCS2A01G267400 chr1A 86.047 215 29 1 1 215 516162814 516163027 5.160000e-56 230.0
39 TraesCS2A01G267400 chr1A 90.909 88 8 0 4430 4517 548375623 548375536 1.160000e-22 119.0
40 TraesCS2A01G267400 chr1A 82.482 137 16 2 411 539 13310334 13310198 5.420000e-21 113.0
41 TraesCS2A01G267400 chr1A 96.226 53 2 0 3348 3400 201863376 201863428 3.280000e-13 87.9
42 TraesCS2A01G267400 chr1A 96.226 53 2 0 3348 3400 377544597 377544545 3.280000e-13 87.9
43 TraesCS2A01G267400 chr5B 86.321 212 26 2 4 213 464890447 464890237 1.850000e-55 228.0
44 TraesCS2A01G267400 chr5B 88.636 88 10 0 4427 4514 457395778 457395865 2.520000e-19 108.0
45 TraesCS2A01G267400 chr1D 81.893 243 41 3 6187 6428 481442554 481442314 1.120000e-47 202.0
46 TraesCS2A01G267400 chr1D 96.226 53 2 0 3348 3400 266571401 266571453 3.280000e-13 87.9
47 TraesCS2A01G267400 chr7B 80.000 240 47 1 6189 6428 742270035 742269797 6.810000e-40 176.0
48 TraesCS2A01G267400 chr7B 85.714 119 10 2 411 522 594899809 594899691 1.160000e-22 119.0
49 TraesCS2A01G267400 chr6B 86.957 115 7 3 411 517 702855007 702854893 9.000000e-24 122.0
50 TraesCS2A01G267400 chr6B 94.444 36 1 1 6077 6111 689518504 689518539 3.000000e-03 54.7
51 TraesCS2A01G267400 chr1B 84.252 127 12 4 411 531 352332062 352331938 4.190000e-22 117.0
52 TraesCS2A01G267400 chr1B 84.127 126 15 1 411 531 666836524 666836649 4.190000e-22 117.0
53 TraesCS2A01G267400 chr7D 89.773 88 9 0 4430 4517 493547895 493547808 5.420000e-21 113.0
54 TraesCS2A01G267400 chr7D 89.888 89 6 2 4427 4515 6767219 6767304 1.950000e-20 111.0
55 TraesCS2A01G267400 chr7D 96.226 53 2 0 3348 3400 140003753 140003805 3.280000e-13 87.9
56 TraesCS2A01G267400 chr5D 75.664 226 42 11 6214 6435 262847485 262847269 4.220000e-17 100.0
57 TraesCS2A01G267400 chr5D 96.226 53 2 0 3348 3400 342362067 342362015 3.280000e-13 87.9
58 TraesCS2A01G267400 chr5D 96.774 31 1 0 5460 5490 311903632 311903602 1.200000e-02 52.8
59 TraesCS2A01G267400 chrUn 96.226 53 2 0 3348 3400 182300158 182300210 3.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G267400 chr2A 426375519 426382129 6610 True 12209.000000 12209 100.000000 1 6611 1 chr2A.!!$R1 6610
1 TraesCS2A01G267400 chr2B 362017970 362023349 5379 False 1685.560000 2693 96.257800 625 6610 5 chr2B.!!$F1 5985
2 TraesCS2A01G267400 chr2D 310300134 310306285 6151 True 1510.666667 2494 93.759167 1 6442 6 chr2D.!!$R2 6441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 602 0.866483 GCTTGTAGTCGTCGCTAGGC 60.866 60.0 0.00 0.0 0.00 3.93 F
2079 2348 0.745845 AGCTAGCTTCGGTTGGCATG 60.746 55.0 12.68 0.0 35.32 4.06 F
2290 2559 1.068121 AAGGTTCCAAGGCTGCTAGT 58.932 50.0 0.00 0.0 0.00 2.57 F
2934 3209 0.871057 CACACACACACACACACACA 59.129 50.0 0.00 0.0 0.00 3.72 F
2944 3219 0.871057 CACACACACACACACACACA 59.129 50.0 0.00 0.0 0.00 3.72 F
4920 5262 0.480690 TACTGCAACCACCCCATTGT 59.519 50.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2541 1.068121 AACTAGCAGCCTTGGAACCT 58.932 50.000 0.00 0.00 0.00 3.50 R
2915 3190 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82 R
3302 3577 1.089920 GTACGTACTCCCGCTTCTCA 58.910 55.000 18.47 0.00 0.00 3.27 R
4920 5262 0.320374 GTCTCCACCATGTCGGACAA 59.680 55.000 15.72 0.00 38.63 3.18 R
4990 5332 5.412640 TGGTAATGGTAAGATACACGTGTG 58.587 41.667 30.83 0.53 0.00 3.82 R
6496 6881 0.896940 ACAGGGCCAATGAGCACAAG 60.897 55.000 13.73 0.00 39.23 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.815401 GGATAGACCGAATTTGTCATGGG 59.185 47.826 10.55 0.00 35.15 4.00
25 27 2.571653 AGACCGAATTTGTCATGGGAGA 59.428 45.455 10.55 0.00 35.15 3.71
43 45 5.131784 GGGAGAAGTCCGTAAAGAGAGATA 58.868 45.833 0.00 0.00 45.05 1.98
53 55 7.596995 GTCCGTAAAGAGAGATATGAAGGATTG 59.403 40.741 0.00 0.00 0.00 2.67
60 62 8.971032 AGAGAGATATGAAGGATTGGAGTATT 57.029 34.615 0.00 0.00 0.00 1.89
86 88 8.840200 ATCAAAGAACTAGTTATAGACAGGGA 57.160 34.615 8.42 0.00 32.93 4.20
96 98 2.672961 TAGACAGGGATGCGTGAAAG 57.327 50.000 14.16 0.00 0.00 2.62
101 103 1.153958 GGGATGCGTGAAAGCTTGC 60.154 57.895 0.00 0.00 38.13 4.01
165 167 9.816787 TTATGTTTTTCACCTCTAATTTACCCT 57.183 29.630 0.00 0.00 0.00 4.34
168 170 9.816787 TGTTTTTCACCTCTAATTTACCCTAAT 57.183 29.630 0.00 0.00 0.00 1.73
195 197 7.327214 TGTTTGGAATTAAAGACTTTGCTGTT 58.673 30.769 10.80 0.49 0.00 3.16
204 206 2.747446 AGACTTTGCTGTTGTTGTTCGT 59.253 40.909 0.00 0.00 0.00 3.85
296 299 9.918630 ATTCTTCATCTGAATAAAAAGGTGTTG 57.081 29.630 0.00 0.00 32.98 3.33
298 301 9.300681 TCTTCATCTGAATAAAAAGGTGTTGAT 57.699 29.630 0.00 0.00 33.01 2.57
336 339 5.793030 AGTAATACTTGAAGATAGCCGCT 57.207 39.130 0.00 0.00 0.00 5.52
337 340 6.896021 AGTAATACTTGAAGATAGCCGCTA 57.104 37.500 1.73 1.73 0.00 4.26
341 344 9.291664 GTAATACTTGAAGATAGCCGCTATAAG 57.708 37.037 12.99 14.16 0.00 1.73
342 345 5.140747 ACTTGAAGATAGCCGCTATAAGG 57.859 43.478 12.99 3.35 0.00 2.69
343 346 4.589374 ACTTGAAGATAGCCGCTATAAGGT 59.411 41.667 12.99 3.91 0.00 3.50
346 349 4.344102 TGAAGATAGCCGCTATAAGGTTGT 59.656 41.667 12.99 0.00 0.00 3.32
347 350 5.537295 TGAAGATAGCCGCTATAAGGTTGTA 59.463 40.000 12.99 0.00 0.00 2.41
349 352 6.415206 AGATAGCCGCTATAAGGTTGTAAA 57.585 37.500 12.99 0.00 0.00 2.01
350 353 7.005709 AGATAGCCGCTATAAGGTTGTAAAT 57.994 36.000 12.99 0.00 0.00 1.40
351 354 8.130671 AGATAGCCGCTATAAGGTTGTAAATA 57.869 34.615 12.99 0.00 0.00 1.40
352 355 8.251721 AGATAGCCGCTATAAGGTTGTAAATAG 58.748 37.037 12.99 0.00 0.00 1.73
354 357 4.153655 GCCGCTATAAGGTTGTAAATAGCC 59.846 45.833 7.41 0.00 42.39 3.93
355 358 4.387862 CCGCTATAAGGTTGTAAATAGCCG 59.612 45.833 7.41 3.87 42.39 5.52
356 359 4.143179 CGCTATAAGGTTGTAAATAGCCGC 60.143 45.833 7.41 0.00 42.39 6.53
357 360 4.995487 GCTATAAGGTTGTAAATAGCCGCT 59.005 41.667 0.00 0.00 40.48 5.52
358 361 6.161381 GCTATAAGGTTGTAAATAGCCGCTA 58.839 40.000 1.73 1.73 40.48 4.26
359 362 6.817140 GCTATAAGGTTGTAAATAGCCGCTAT 59.183 38.462 7.11 7.11 40.48 2.97
360 363 7.977853 GCTATAAGGTTGTAAATAGCCGCTATA 59.022 37.037 13.35 0.00 40.48 1.31
395 568 5.404066 CCTAAAACCAAAGTTGTAAATGCCG 59.596 40.000 0.00 0.00 35.97 5.69
420 593 6.237861 GCTATAAGGTTTTGAGCTTGTAGTCG 60.238 42.308 17.37 1.98 0.00 4.18
422 595 3.391049 AGGTTTTGAGCTTGTAGTCGTC 58.609 45.455 0.00 0.00 0.00 4.20
429 602 0.866483 GCTTGTAGTCGTCGCTAGGC 60.866 60.000 0.00 0.00 0.00 3.93
446 619 2.093106 AGGCGATATACGGATCTGGAC 58.907 52.381 6.47 0.00 42.83 4.02
461 639 9.765795 ACGGATCTGGACTTTTATTATTTCTAG 57.234 33.333 6.47 0.00 0.00 2.43
487 665 7.915293 ATTCGTTGTACTACCATGATTGAAA 57.085 32.000 0.00 0.00 0.00 2.69
490 668 7.747888 TCGTTGTACTACCATGATTGAAAATG 58.252 34.615 0.00 0.00 0.00 2.32
626 808 1.406539 AGCTGCTATTTGGATTTGGCG 59.593 47.619 0.00 0.00 0.00 5.69
1401 1583 6.755607 CGACTGTATCAGCAAGCATGATATAT 59.244 38.462 0.00 0.00 40.69 0.86
1404 1586 7.984050 ACTGTATCAGCAAGCATGATATATACC 59.016 37.037 0.00 5.53 40.69 2.73
1645 1827 5.123502 TCCAGCTAGTACTAAGAACGAACTG 59.876 44.000 3.76 2.51 0.00 3.16
1659 1841 2.029828 ACGAACTGACTCCTTGTGCTAG 60.030 50.000 0.00 0.00 0.00 3.42
1923 2192 7.457024 TTGTTAGCCTGTTCTTAATTAACCC 57.543 36.000 0.00 0.00 0.00 4.11
1975 2244 3.625649 AGAGAATGGCAGAGACCTTTC 57.374 47.619 0.00 0.00 41.77 2.62
2079 2348 0.745845 AGCTAGCTTCGGTTGGCATG 60.746 55.000 12.68 0.00 35.32 4.06
2190 2459 5.358160 ACATGCTAGCTTTTCAACTAATCCC 59.642 40.000 17.23 0.00 0.00 3.85
2272 2541 7.936847 ACAAGACACTAGAATCCATTGTGTTAA 59.063 33.333 0.00 0.00 41.21 2.01
2290 2559 1.068121 AAGGTTCCAAGGCTGCTAGT 58.932 50.000 0.00 0.00 0.00 2.57
2364 2633 1.833630 TCTTGCACCAGCTACTAGCAT 59.166 47.619 10.73 0.00 45.56 3.79
2432 2701 7.121168 CAGAAGCCTTGTGAAAACTCCATTATA 59.879 37.037 0.00 0.00 0.00 0.98
2706 2979 6.420638 CAGAATAATGGGGATATCTGATGCA 58.579 40.000 2.05 0.00 0.00 3.96
2739 3014 3.505293 GGTACGACTACTGTGTTCTTCCT 59.495 47.826 0.00 0.00 0.00 3.36
2862 3137 7.559533 TGTGTACAGAATAATGGCCATGTAATT 59.440 33.333 21.63 18.70 0.00 1.40
2922 3197 9.883142 TGTCATTATTATCATCTTACACACACA 57.117 29.630 0.00 0.00 0.00 3.72
2924 3199 9.883142 TCATTATTATCATCTTACACACACACA 57.117 29.630 0.00 0.00 0.00 3.72
2925 3200 9.920826 CATTATTATCATCTTACACACACACAC 57.079 33.333 0.00 0.00 0.00 3.82
2926 3201 9.665719 ATTATTATCATCTTACACACACACACA 57.334 29.630 0.00 0.00 0.00 3.72
2927 3202 6.779115 TTATCATCTTACACACACACACAC 57.221 37.500 0.00 0.00 0.00 3.82
2928 3203 4.130286 TCATCTTACACACACACACACA 57.870 40.909 0.00 0.00 0.00 3.72
2929 3204 3.868661 TCATCTTACACACACACACACAC 59.131 43.478 0.00 0.00 0.00 3.82
2930 3205 3.320673 TCTTACACACACACACACACA 57.679 42.857 0.00 0.00 0.00 3.72
2931 3206 2.997303 TCTTACACACACACACACACAC 59.003 45.455 0.00 0.00 0.00 3.82
2932 3207 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
2933 3208 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2934 3209 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2935 3210 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2936 3211 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2937 3212 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2938 3213 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2939 3214 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2940 3215 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2941 3216 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2942 3217 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2943 3218 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2944 3219 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2945 3220 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2946 3221 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2947 3222 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2948 3223 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2949 3224 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2950 3225 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2951 3226 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2952 3227 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2953 3228 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2954 3229 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2955 3230 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2956 3231 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
2957 3232 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
2958 3233 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
2959 3234 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
2960 3235 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
2961 3236 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
2962 3237 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
2963 3238 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
2990 3265 3.375647 AGGACTCCTCTTCTGTACTCC 57.624 52.381 0.00 0.00 0.00 3.85
2991 3266 2.923629 AGGACTCCTCTTCTGTACTCCT 59.076 50.000 0.00 0.00 0.00 3.69
2992 3267 3.020984 GGACTCCTCTTCTGTACTCCTG 58.979 54.545 0.00 0.00 0.00 3.86
2993 3268 3.020984 GACTCCTCTTCTGTACTCCTGG 58.979 54.545 0.00 0.00 0.00 4.45
2994 3269 2.291930 ACTCCTCTTCTGTACTCCTGGG 60.292 54.545 0.00 0.00 0.00 4.45
2995 3270 2.000803 TCCTCTTCTGTACTCCTGGGA 58.999 52.381 0.00 0.00 0.00 4.37
2996 3271 2.024846 TCCTCTTCTGTACTCCTGGGAG 60.025 54.545 14.44 14.44 46.91 4.30
3024 3299 8.996651 TGTACTCTCATTCTCAATATACCTCA 57.003 34.615 0.00 0.00 0.00 3.86
3025 3300 9.593565 TGTACTCTCATTCTCAATATACCTCAT 57.406 33.333 0.00 0.00 0.00 2.90
3031 3306 9.457110 CTCATTCTCAATATACCTCATATACGC 57.543 37.037 0.00 0.00 0.00 4.42
3032 3307 8.966868 TCATTCTCAATATACCTCATATACGCA 58.033 33.333 0.00 0.00 0.00 5.24
3033 3308 9.755804 CATTCTCAATATACCTCATATACGCAT 57.244 33.333 0.00 0.00 0.00 4.73
3098 3373 8.896722 ATATTCTAAGATACCCCAATACGAGT 57.103 34.615 0.00 0.00 0.00 4.18
3099 3374 7.613551 ATTCTAAGATACCCCAATACGAGTT 57.386 36.000 0.00 0.00 0.00 3.01
3100 3375 7.427989 TTCTAAGATACCCCAATACGAGTTT 57.572 36.000 0.00 0.00 0.00 2.66
3101 3376 7.427989 TCTAAGATACCCCAATACGAGTTTT 57.572 36.000 0.00 0.00 0.00 2.43
3102 3377 7.270047 TCTAAGATACCCCAATACGAGTTTTG 58.730 38.462 0.00 0.45 0.00 2.44
3103 3378 5.431179 AGATACCCCAATACGAGTTTTGT 57.569 39.130 0.00 0.00 0.00 2.83
3104 3379 5.812286 AGATACCCCAATACGAGTTTTGTT 58.188 37.500 0.00 0.00 0.00 2.83
3105 3380 6.949715 AGATACCCCAATACGAGTTTTGTTA 58.050 36.000 0.00 0.00 0.00 2.41
3106 3381 7.396418 AGATACCCCAATACGAGTTTTGTTAA 58.604 34.615 0.00 0.00 0.00 2.01
3107 3382 7.884354 AGATACCCCAATACGAGTTTTGTTAAA 59.116 33.333 0.00 0.00 0.00 1.52
3108 3383 6.712179 ACCCCAATACGAGTTTTGTTAAAA 57.288 33.333 0.00 0.00 0.00 1.52
3109 3384 7.110043 ACCCCAATACGAGTTTTGTTAAAAA 57.890 32.000 0.00 0.00 32.82 1.94
3134 3409 9.507280 AAAATATCATCTGCGATGTACTTTTTG 57.493 29.630 15.04 0.00 0.00 2.44
3135 3410 7.792374 ATATCATCTGCGATGTACTTTTTGT 57.208 32.000 15.04 0.00 0.00 2.83
3136 3411 5.530519 TCATCTGCGATGTACTTTTTGTC 57.469 39.130 15.04 0.00 0.00 3.18
3137 3412 4.994217 TCATCTGCGATGTACTTTTTGTCA 59.006 37.500 15.04 0.00 0.00 3.58
3138 3413 5.643348 TCATCTGCGATGTACTTTTTGTCAT 59.357 36.000 15.04 0.00 0.00 3.06
3139 3414 6.816140 TCATCTGCGATGTACTTTTTGTCATA 59.184 34.615 15.04 0.00 0.00 2.15
3140 3415 7.495606 TCATCTGCGATGTACTTTTTGTCATAT 59.504 33.333 15.04 0.00 0.00 1.78
3141 3416 8.764287 CATCTGCGATGTACTTTTTGTCATATA 58.236 33.333 9.48 0.00 0.00 0.86
3142 3417 8.126871 TCTGCGATGTACTTTTTGTCATATAC 57.873 34.615 0.00 0.00 0.00 1.47
3143 3418 7.223971 TCTGCGATGTACTTTTTGTCATATACC 59.776 37.037 0.00 0.00 0.00 2.73
3144 3419 7.045416 TGCGATGTACTTTTTGTCATATACCT 58.955 34.615 0.00 0.00 0.00 3.08
3145 3420 7.551262 TGCGATGTACTTTTTGTCATATACCTT 59.449 33.333 0.00 0.00 0.00 3.50
3146 3421 8.395633 GCGATGTACTTTTTGTCATATACCTTT 58.604 33.333 0.00 0.00 0.00 3.11
3165 3440 7.106439 ACCTTTTTCACATACAAACACATCA 57.894 32.000 0.00 0.00 0.00 3.07
3166 3441 7.202526 ACCTTTTTCACATACAAACACATCAG 58.797 34.615 0.00 0.00 0.00 2.90
3167 3442 7.147915 ACCTTTTTCACATACAAACACATCAGT 60.148 33.333 0.00 0.00 0.00 3.41
3168 3443 8.349245 CCTTTTTCACATACAAACACATCAGTA 58.651 33.333 0.00 0.00 0.00 2.74
3169 3444 9.897744 CTTTTTCACATACAAACACATCAGTAT 57.102 29.630 0.00 0.00 0.00 2.12
3174 3449 9.458374 TCACATACAAACACATCAGTATATACG 57.542 33.333 7.23 3.26 0.00 3.06
3175 3450 9.244799 CACATACAAACACATCAGTATATACGT 57.755 33.333 7.23 0.00 0.00 3.57
3180 3455 9.642327 ACAAACACATCAGTATATACGTAAACA 57.358 29.630 7.23 0.00 0.00 2.83
3231 3506 4.888326 TTTCATGGAACTCATTTTGGGG 57.112 40.909 0.00 0.00 32.92 4.96
3232 3507 3.541242 TCATGGAACTCATTTTGGGGT 57.459 42.857 0.00 0.00 32.92 4.95
3233 3508 4.666412 TCATGGAACTCATTTTGGGGTA 57.334 40.909 0.00 0.00 32.92 3.69
3234 3509 5.205517 TCATGGAACTCATTTTGGGGTAT 57.794 39.130 0.00 0.00 32.92 2.73
3235 3510 5.200483 TCATGGAACTCATTTTGGGGTATC 58.800 41.667 0.00 0.00 32.92 2.24
3236 3511 4.946160 TGGAACTCATTTTGGGGTATCT 57.054 40.909 0.00 0.00 0.00 1.98
3237 3512 6.159575 TCATGGAACTCATTTTGGGGTATCTA 59.840 38.462 0.00 0.00 32.92 1.98
3238 3513 6.395780 TGGAACTCATTTTGGGGTATCTAA 57.604 37.500 0.00 0.00 0.00 2.10
3239 3514 6.980577 TGGAACTCATTTTGGGGTATCTAAT 58.019 36.000 0.00 0.00 0.00 1.73
3240 3515 8.108378 TGGAACTCATTTTGGGGTATCTAATA 57.892 34.615 0.00 0.00 0.00 0.98
3241 3516 8.561769 TGGAACTCATTTTGGGGTATCTAATAA 58.438 33.333 0.00 0.00 0.00 1.40
3242 3517 9.588096 GGAACTCATTTTGGGGTATCTAATAAT 57.412 33.333 0.00 0.00 0.00 1.28
3309 3584 9.311916 GATTCATCTATGTGGTATATGAGAAGC 57.688 37.037 0.00 0.00 30.43 3.86
3310 3585 6.856895 TCATCTATGTGGTATATGAGAAGCG 58.143 40.000 0.00 0.00 0.00 4.68
3311 3586 5.644977 TCTATGTGGTATATGAGAAGCGG 57.355 43.478 0.00 0.00 0.00 5.52
3312 3587 3.685139 ATGTGGTATATGAGAAGCGGG 57.315 47.619 0.00 0.00 0.00 6.13
3313 3588 2.673258 TGTGGTATATGAGAAGCGGGA 58.327 47.619 0.00 0.00 0.00 5.14
3314 3589 2.628178 TGTGGTATATGAGAAGCGGGAG 59.372 50.000 0.00 0.00 0.00 4.30
3315 3590 2.628657 GTGGTATATGAGAAGCGGGAGT 59.371 50.000 0.00 0.00 0.00 3.85
3316 3591 3.825014 GTGGTATATGAGAAGCGGGAGTA 59.175 47.826 0.00 0.00 0.00 2.59
3317 3592 3.825014 TGGTATATGAGAAGCGGGAGTAC 59.175 47.826 0.00 0.00 0.00 2.73
3318 3593 3.119919 GGTATATGAGAAGCGGGAGTACG 60.120 52.174 0.00 0.00 0.00 3.67
3319 3594 2.048444 TATGAGAAGCGGGAGTACGT 57.952 50.000 0.00 0.00 35.98 3.57
3320 3595 2.048444 ATGAGAAGCGGGAGTACGTA 57.952 50.000 0.00 0.00 35.98 3.57
3321 3596 1.089920 TGAGAAGCGGGAGTACGTAC 58.910 55.000 18.10 18.10 35.98 3.67
3322 3597 1.339438 TGAGAAGCGGGAGTACGTACT 60.339 52.381 27.71 27.71 39.71 2.73
3340 3615 1.348064 CTCCCAGGAGTACACAACCA 58.652 55.000 5.47 0.00 37.47 3.67
3341 3616 1.909302 CTCCCAGGAGTACACAACCAT 59.091 52.381 5.47 0.00 37.47 3.55
3342 3617 2.305927 CTCCCAGGAGTACACAACCATT 59.694 50.000 5.47 0.00 37.47 3.16
3343 3618 2.714250 TCCCAGGAGTACACAACCATTT 59.286 45.455 0.00 0.00 0.00 2.32
3344 3619 3.139397 TCCCAGGAGTACACAACCATTTT 59.861 43.478 0.00 0.00 0.00 1.82
3345 3620 3.506067 CCCAGGAGTACACAACCATTTTC 59.494 47.826 0.00 0.00 0.00 2.29
3346 3621 3.506067 CCAGGAGTACACAACCATTTTCC 59.494 47.826 0.00 0.00 0.00 3.13
3347 3622 4.398319 CAGGAGTACACAACCATTTTCCT 58.602 43.478 0.00 0.00 34.27 3.36
3348 3623 5.514136 CCAGGAGTACACAACCATTTTCCTA 60.514 44.000 0.00 0.00 32.78 2.94
3349 3624 6.180472 CAGGAGTACACAACCATTTTCCTAT 58.820 40.000 0.00 0.00 32.78 2.57
3350 3625 7.335627 CAGGAGTACACAACCATTTTCCTATA 58.664 38.462 0.00 0.00 32.78 1.31
3351 3626 7.993183 CAGGAGTACACAACCATTTTCCTATAT 59.007 37.037 0.00 0.00 32.78 0.86
3352 3627 9.220906 AGGAGTACACAACCATTTTCCTATATA 57.779 33.333 0.00 0.00 32.30 0.86
3379 3654 8.747538 ATATAGGACAAATGTTTTCTACCACC 57.252 34.615 0.00 0.00 0.00 4.61
3380 3655 4.798882 AGGACAAATGTTTTCTACCACCA 58.201 39.130 0.00 0.00 0.00 4.17
3381 3656 4.827284 AGGACAAATGTTTTCTACCACCAG 59.173 41.667 0.00 0.00 0.00 4.00
3382 3657 4.583073 GGACAAATGTTTTCTACCACCAGT 59.417 41.667 0.00 0.00 0.00 4.00
3383 3658 5.507315 GGACAAATGTTTTCTACCACCAGTG 60.507 44.000 0.00 0.00 0.00 3.66
3455 3730 7.547227 AGAACATTTTAACTGCAACTTGAACT 58.453 30.769 0.00 0.00 0.00 3.01
3476 3751 9.658799 TGAACTAAATGTTTCATCTCTTAGGAG 57.341 33.333 0.00 0.00 39.30 3.69
3534 3816 3.488047 GGTGAATTGCGCGTAGAGTAGTA 60.488 47.826 8.43 0.00 0.00 1.82
3536 3818 4.738740 GTGAATTGCGCGTAGAGTAGTATT 59.261 41.667 8.43 0.00 0.00 1.89
3557 3839 9.367160 AGTATTCAGGGAAAAGAAATTCTTGAA 57.633 29.630 9.21 8.31 36.71 2.69
3727 4048 7.279981 TCTGCATCAAATTTAGCAACTACGTAT 59.720 33.333 11.64 0.00 36.44 3.06
3798 4139 5.572211 CACACAGAACAATATATGGTGCAC 58.428 41.667 8.80 8.80 0.00 4.57
3909 4250 3.421844 ACAAGTGAGGTTTAAGGGATGC 58.578 45.455 0.00 0.00 0.00 3.91
3912 4253 1.065709 GTGAGGTTTAAGGGATGCCGA 60.066 52.381 0.00 0.00 0.00 5.54
3989 4330 2.799978 GCACACCAATTTAAGGTTGCAC 59.200 45.455 0.00 0.00 40.09 4.57
4094 4435 7.830099 ATATTGAGGACATTTCTTGGGATTC 57.170 36.000 0.00 0.00 0.00 2.52
4095 4436 3.968265 TGAGGACATTTCTTGGGATTCC 58.032 45.455 0.00 0.00 0.00 3.01
4096 4437 3.333381 TGAGGACATTTCTTGGGATTCCA 59.667 43.478 4.80 0.00 42.25 3.53
4097 4438 4.017222 TGAGGACATTTCTTGGGATTCCAT 60.017 41.667 4.80 0.00 43.63 3.41
4098 4439 4.951603 AGGACATTTCTTGGGATTCCATT 58.048 39.130 4.80 0.00 43.63 3.16
4165 4506 4.883083 TCCACTATTATTCTCGCACATCC 58.117 43.478 0.00 0.00 0.00 3.51
4187 4528 4.513692 CCGAACTGAAGTTATGGTCAAACA 59.486 41.667 0.00 0.00 38.56 2.83
4307 4648 5.232838 GTGCACATTTTGTCTCTTTCCTTTG 59.767 40.000 13.17 0.00 0.00 2.77
4333 4674 9.476202 GGTTTGCTCATTTTCATTTACTACTTT 57.524 29.630 0.00 0.00 0.00 2.66
4452 4793 8.846423 ATTACTCCCTCAGTCCCATAATATAG 57.154 38.462 0.00 0.00 36.43 1.31
4456 4797 5.318889 TCCCTCAGTCCCATAATATAGGAGT 59.681 44.000 0.00 0.00 33.46 3.85
4463 4804 8.840321 CAGTCCCATAATATAGGAGTGTTTTTG 58.160 37.037 12.52 0.00 43.35 2.44
4741 5082 1.133513 TCAACTGACAAACCATGGCCT 60.134 47.619 13.04 0.00 35.52 5.19
4920 5262 0.480690 TACTGCAACCACCCCATTGT 59.519 50.000 0.00 0.00 0.00 2.71
4990 5332 6.019479 GTGATAACCATTCTGATCTCGACAAC 60.019 42.308 0.00 0.00 0.00 3.32
5291 5633 2.901839 GCCTTACCCCTCGGTATGATAA 59.098 50.000 4.28 0.00 44.34 1.75
5376 5718 4.810491 GCCGCATGTAATTTCCATCAAAAT 59.190 37.500 0.00 0.00 0.00 1.82
5395 5737 6.966632 TCAAAATGAAAGCTGCGTTATGTATC 59.033 34.615 0.00 0.00 0.00 2.24
5909 6288 9.912634 AATCACTTATGTACATTGGTTTTTCTG 57.087 29.630 14.77 1.52 0.00 3.02
6208 6592 9.973661 TTAGAGGATTTTCATGTGGAATCTTTA 57.026 29.630 13.82 6.10 34.91 1.85
6248 6632 0.888619 AAGACAACCTCGCTCATCGA 59.111 50.000 0.00 0.00 46.29 3.59
6271 6655 3.412386 ACTAGCAAGGAAGCGACAAATT 58.588 40.909 0.00 0.00 40.15 1.82
6287 6671 6.397171 GCGACAAATTTAGTTTTTGTACTCGC 60.397 38.462 13.92 13.92 44.90 5.03
6306 6690 4.682787 TCGCGATGAGACAATCAAATAGT 58.317 39.130 3.71 0.00 42.53 2.12
6342 6726 1.165270 GTTTGCGCATTCTAGGTGGT 58.835 50.000 12.75 0.00 0.00 4.16
6344 6728 0.739462 TTGCGCATTCTAGGTGGTCG 60.739 55.000 12.75 0.00 0.00 4.79
6365 6749 5.290158 GTCGGTCATTCAAATAGCGTCTAAA 59.710 40.000 0.00 0.00 35.73 1.85
6369 6753 7.472543 GGTCATTCAAATAGCGTCTAAATTGT 58.527 34.615 11.60 0.00 0.00 2.71
6384 6768 7.855904 CGTCTAAATTGTTATCTGCCCATAAAC 59.144 37.037 0.00 0.00 0.00 2.01
6445 6830 2.552093 TAGGTCTTAGGCTGCTTCCT 57.448 50.000 0.00 2.84 40.21 3.36
6453 6838 4.830046 TCTTAGGCTGCTTCCTATGTAGAG 59.170 45.833 0.00 6.14 38.42 2.43
6517 6902 0.625316 TGTGCTCATTGGCCCTGTAT 59.375 50.000 0.00 0.00 0.00 2.29
6526 6911 4.344102 TCATTGGCCCTGTATGTAGTCTAC 59.656 45.833 0.00 2.81 0.00 2.59
6527 6912 3.391799 TGGCCCTGTATGTAGTCTACA 57.608 47.619 14.99 14.99 43.80 2.74
6546 6931 8.928448 AGTCTACATTACACATCATGGAATACT 58.072 33.333 0.00 0.00 40.16 2.12
6557 6942 9.342308 CACATCATGGAATACTAACCACTATTT 57.658 33.333 0.00 0.00 39.06 1.40
6569 6954 7.166167 ACTAACCACTATTTAAGGAAGTGTGG 58.834 38.462 0.00 0.00 43.90 4.17
6584 6969 4.263572 TGGGTGCGGTTGGAGTGG 62.264 66.667 0.00 0.00 0.00 4.00
6592 6977 1.073199 GGTTGGAGTGGGTGGACAG 59.927 63.158 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.772572 TCTCCCATGACAAATTCGGTCTA 59.227 43.478 10.47 0.54 36.26 2.59
4 5 2.571653 TCTCCCATGACAAATTCGGTCT 59.428 45.455 10.47 0.00 36.26 3.85
5 6 2.985896 TCTCCCATGACAAATTCGGTC 58.014 47.619 0.00 3.84 35.83 4.79
6 7 3.244911 ACTTCTCCCATGACAAATTCGGT 60.245 43.478 0.00 0.00 0.00 4.69
7 8 3.347216 ACTTCTCCCATGACAAATTCGG 58.653 45.455 0.00 0.00 0.00 4.30
9 10 3.375299 CGGACTTCTCCCATGACAAATTC 59.625 47.826 0.00 0.00 31.93 2.17
12 13 1.697432 ACGGACTTCTCCCATGACAAA 59.303 47.619 0.00 0.00 31.93 2.83
15 16 3.194968 TCTTTACGGACTTCTCCCATGAC 59.805 47.826 0.00 0.00 31.93 3.06
16 17 3.437213 TCTTTACGGACTTCTCCCATGA 58.563 45.455 0.00 0.00 31.93 3.07
17 18 3.447586 TCTCTTTACGGACTTCTCCCATG 59.552 47.826 0.00 0.00 31.93 3.66
18 19 3.702045 CTCTCTTTACGGACTTCTCCCAT 59.298 47.826 0.00 0.00 31.93 4.00
19 20 3.090037 CTCTCTTTACGGACTTCTCCCA 58.910 50.000 0.00 0.00 31.93 4.37
20 21 3.354467 TCTCTCTTTACGGACTTCTCCC 58.646 50.000 0.00 0.00 31.93 4.30
22 23 7.499321 TCATATCTCTCTTTACGGACTTCTC 57.501 40.000 0.00 0.00 0.00 2.87
25 27 6.834451 TCCTTCATATCTCTCTTTACGGACTT 59.166 38.462 0.00 0.00 0.00 3.01
60 62 9.931698 TCCCTGTCTATAACTAGTTCTTTGATA 57.068 33.333 12.39 3.24 0.00 2.15
62 64 8.696374 CATCCCTGTCTATAACTAGTTCTTTGA 58.304 37.037 12.39 5.09 0.00 2.69
63 65 7.439655 GCATCCCTGTCTATAACTAGTTCTTTG 59.560 40.741 12.39 2.73 0.00 2.77
74 76 4.693283 CTTTCACGCATCCCTGTCTATAA 58.307 43.478 0.00 0.00 0.00 0.98
78 80 0.674895 GCTTTCACGCATCCCTGTCT 60.675 55.000 0.00 0.00 0.00 3.41
86 88 1.672881 GGATAGCAAGCTTTCACGCAT 59.327 47.619 13.19 1.45 0.00 4.73
96 98 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
101 103 2.715749 TGGTTCTGGCACATGGATAG 57.284 50.000 0.00 0.00 38.20 2.08
168 170 7.821846 ACAGCAAAGTCTTTAATTCCAAACAAA 59.178 29.630 0.00 0.00 0.00 2.83
171 173 7.277760 ACAACAGCAAAGTCTTTAATTCCAAAC 59.722 33.333 0.00 0.00 0.00 2.93
179 181 5.797934 CGAACAACAACAGCAAAGTCTTTAA 59.202 36.000 0.00 0.00 0.00 1.52
184 186 3.131240 ACGAACAACAACAGCAAAGTC 57.869 42.857 0.00 0.00 0.00 3.01
190 192 2.591133 ACAACAACGAACAACAACAGC 58.409 42.857 0.00 0.00 0.00 4.40
195 197 4.607955 TCAAACAACAACAACGAACAACA 58.392 34.783 0.00 0.00 0.00 3.33
230 232 7.865706 AAAAGGCCTATATGTAGAAACACTG 57.134 36.000 5.16 0.00 38.78 3.66
309 312 8.460428 GCGGCTATCTTCAAGTATTACTAGTAT 58.540 37.037 2.79 0.00 0.00 2.12
310 313 7.664731 AGCGGCTATCTTCAAGTATTACTAGTA 59.335 37.037 0.00 0.00 0.00 1.82
311 314 6.490721 AGCGGCTATCTTCAAGTATTACTAGT 59.509 38.462 0.00 0.00 0.00 2.57
312 315 6.915349 AGCGGCTATCTTCAAGTATTACTAG 58.085 40.000 0.00 0.00 0.00 2.57
313 316 6.896021 AGCGGCTATCTTCAAGTATTACTA 57.104 37.500 0.00 0.00 0.00 1.82
314 317 5.793030 AGCGGCTATCTTCAAGTATTACT 57.207 39.130 0.00 0.00 0.00 2.24
315 318 9.291664 CTTATAGCGGCTATCTTCAAGTATTAC 57.708 37.037 24.78 0.00 0.00 1.89
316 319 8.467598 CCTTATAGCGGCTATCTTCAAGTATTA 58.532 37.037 24.78 1.39 0.00 0.98
317 320 7.038941 ACCTTATAGCGGCTATCTTCAAGTATT 60.039 37.037 24.78 7.75 0.00 1.89
318 321 6.437793 ACCTTATAGCGGCTATCTTCAAGTAT 59.562 38.462 24.78 10.81 0.00 2.12
319 322 5.773680 ACCTTATAGCGGCTATCTTCAAGTA 59.226 40.000 24.78 3.36 0.00 2.24
320 323 4.589374 ACCTTATAGCGGCTATCTTCAAGT 59.411 41.667 24.78 12.44 0.00 3.16
321 324 5.140747 ACCTTATAGCGGCTATCTTCAAG 57.859 43.478 24.78 20.47 0.00 3.02
324 327 4.884247 ACAACCTTATAGCGGCTATCTTC 58.116 43.478 24.78 0.00 0.00 2.87
325 328 4.957684 ACAACCTTATAGCGGCTATCTT 57.042 40.909 24.78 10.22 0.00 2.40
327 330 7.010275 GCTATTTACAACCTTATAGCGGCTATC 59.990 40.741 24.78 2.53 37.00 2.08
329 332 6.161381 GCTATTTACAACCTTATAGCGGCTA 58.839 40.000 12.80 12.80 37.00 3.93
330 333 4.995487 GCTATTTACAACCTTATAGCGGCT 59.005 41.667 7.98 7.98 37.00 5.52
332 335 4.387862 CGGCTATTTACAACCTTATAGCGG 59.612 45.833 0.00 0.00 43.94 5.52
333 336 4.143179 GCGGCTATTTACAACCTTATAGCG 60.143 45.833 0.00 0.00 43.94 4.26
334 337 4.995487 AGCGGCTATTTACAACCTTATAGC 59.005 41.667 0.00 0.00 42.87 2.97
347 350 8.759782 AGGTGACTTTATATATAGCGGCTATTT 58.240 33.333 26.01 20.36 37.44 1.40
349 352 7.899648 AGGTGACTTTATATATAGCGGCTAT 57.100 36.000 24.50 24.50 37.44 2.97
350 353 8.812513 TTAGGTGACTTTATATATAGCGGCTA 57.187 34.615 12.80 12.80 43.67 3.93
351 354 7.713734 TTAGGTGACTTTATATATAGCGGCT 57.286 36.000 7.98 7.98 43.67 5.52
352 355 8.654215 GTTTTAGGTGACTTTATATATAGCGGC 58.346 37.037 0.00 0.00 43.67 6.53
354 357 9.701098 TGGTTTTAGGTGACTTTATATATAGCG 57.299 33.333 0.56 0.00 43.67 4.26
361 364 9.411189 ACAACTTTGGTTTTAGGTGACTTTATA 57.589 29.630 0.00 0.00 36.16 0.98
362 365 8.301252 ACAACTTTGGTTTTAGGTGACTTTAT 57.699 30.769 0.00 0.00 36.16 1.40
384 556 6.151312 TCAAAACCTTATAGCGGCATTTACAA 59.849 34.615 1.45 0.00 0.00 2.41
395 568 6.237861 CGACTACAAGCTCAAAACCTTATAGC 60.238 42.308 0.00 0.00 0.00 2.97
458 636 9.181805 CAATCATGGTAGTACAACGAATACTAG 57.818 37.037 2.06 0.00 36.13 2.57
461 639 7.997107 TCAATCATGGTAGTACAACGAATAC 57.003 36.000 2.06 0.00 0.00 1.89
568 746 3.649023 TGGCTATAACGGTTATGGTCCAT 59.351 43.478 23.23 9.88 31.06 3.41
609 791 2.357637 GCTACGCCAAATCCAAATAGCA 59.642 45.455 0.00 0.00 34.92 3.49
1401 1583 2.681848 TCACGCAAAAGAAAAACGGGTA 59.318 40.909 0.00 0.00 0.00 3.69
1404 1586 3.121828 CGAATCACGCAAAAGAAAAACGG 60.122 43.478 0.00 0.00 34.51 4.44
1645 1827 4.378874 GCAATTTCACTAGCACAAGGAGTC 60.379 45.833 0.00 0.00 0.00 3.36
1659 1841 1.448985 TACGCCTCCTGCAATTTCAC 58.551 50.000 0.00 0.00 41.33 3.18
1923 2192 5.932303 CCCTCCCATCATAAACTAATACACG 59.068 44.000 0.00 0.00 0.00 4.49
1961 2230 1.494721 ACAAAGGAAAGGTCTCTGCCA 59.505 47.619 0.00 0.00 0.00 4.92
2069 2338 4.738998 TGCCCTCCATGCCAACCG 62.739 66.667 0.00 0.00 0.00 4.44
2079 2348 2.985456 CTCCTCACTGTGCCCTCC 59.015 66.667 2.12 0.00 0.00 4.30
2272 2541 1.068121 AACTAGCAGCCTTGGAACCT 58.932 50.000 0.00 0.00 0.00 3.50
2290 2559 2.762887 AGATCGATGACTCTCCTGCAAA 59.237 45.455 0.54 0.00 0.00 3.68
2408 2677 4.590850 AATGGAGTTTTCACAAGGCTTC 57.409 40.909 0.00 0.00 0.00 3.86
2719 2992 6.413052 AGATAGGAAGAACACAGTAGTCGTA 58.587 40.000 0.00 0.00 0.00 3.43
2739 3014 3.457749 TGCATACCACAACCATGGAGATA 59.542 43.478 21.47 6.75 43.02 1.98
2862 3137 8.310382 AGTTTATGCATTTTGTAATGTGCCTTA 58.690 29.630 3.54 0.00 42.56 2.69
2899 3174 9.920826 GTGTGTGTGTGTAAGATGATAATAATG 57.079 33.333 0.00 0.00 0.00 1.90
2900 3175 9.665719 TGTGTGTGTGTGTAAGATGATAATAAT 57.334 29.630 0.00 0.00 0.00 1.28
2901 3176 8.931775 GTGTGTGTGTGTGTAAGATGATAATAA 58.068 33.333 0.00 0.00 0.00 1.40
2903 3178 6.934083 TGTGTGTGTGTGTGTAAGATGATAAT 59.066 34.615 0.00 0.00 0.00 1.28
2904 3179 6.201997 GTGTGTGTGTGTGTGTAAGATGATAA 59.798 38.462 0.00 0.00 0.00 1.75
2905 3180 5.694458 GTGTGTGTGTGTGTGTAAGATGATA 59.306 40.000 0.00 0.00 0.00 2.15
2907 3182 3.868661 GTGTGTGTGTGTGTGTAAGATGA 59.131 43.478 0.00 0.00 0.00 2.92
2908 3183 3.620821 TGTGTGTGTGTGTGTGTAAGATG 59.379 43.478 0.00 0.00 0.00 2.90
2909 3184 3.621268 GTGTGTGTGTGTGTGTGTAAGAT 59.379 43.478 0.00 0.00 0.00 2.40
2910 3185 2.997303 GTGTGTGTGTGTGTGTGTAAGA 59.003 45.455 0.00 0.00 0.00 2.10
2911 3186 2.739379 TGTGTGTGTGTGTGTGTGTAAG 59.261 45.455 0.00 0.00 0.00 2.34
2912 3187 2.480802 GTGTGTGTGTGTGTGTGTGTAA 59.519 45.455 0.00 0.00 0.00 2.41
2913 3188 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
2914 3189 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2915 3190 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2916 3191 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2917 3192 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2918 3193 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2919 3194 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2920 3195 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2921 3196 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2922 3197 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2923 3198 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2924 3199 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2925 3200 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2926 3201 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2927 3202 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2928 3203 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2929 3204 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2930 3205 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2931 3206 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2932 3207 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2933 3208 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2934 3209 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2935 3210 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2936 3211 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2937 3212 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
2964 3239 8.554011 GGAGTACAGAAGAGGAGTCCTATATAT 58.446 40.741 12.99 0.00 31.76 0.86
2965 3240 7.740365 AGGAGTACAGAAGAGGAGTCCTATATA 59.260 40.741 12.99 0.00 39.50 0.86
2966 3241 6.564927 AGGAGTACAGAAGAGGAGTCCTATAT 59.435 42.308 12.99 0.47 39.50 0.86
2967 3242 5.912354 AGGAGTACAGAAGAGGAGTCCTATA 59.088 44.000 12.99 0.00 39.50 1.31
2968 3243 4.729881 AGGAGTACAGAAGAGGAGTCCTAT 59.270 45.833 12.99 5.94 39.50 2.57
2969 3244 4.080243 CAGGAGTACAGAAGAGGAGTCCTA 60.080 50.000 12.99 0.00 39.31 2.94
2970 3245 2.923629 AGGAGTACAGAAGAGGAGTCCT 59.076 50.000 12.85 12.85 37.00 3.85
2971 3246 3.020984 CAGGAGTACAGAAGAGGAGTCC 58.979 54.545 0.00 0.00 0.00 3.85
2972 3247 3.020984 CCAGGAGTACAGAAGAGGAGTC 58.979 54.545 0.00 0.00 0.00 3.36
2973 3248 2.291930 CCCAGGAGTACAGAAGAGGAGT 60.292 54.545 0.00 0.00 0.00 3.85
2974 3249 2.024846 TCCCAGGAGTACAGAAGAGGAG 60.025 54.545 0.00 0.00 0.00 3.69
2975 3250 2.000803 TCCCAGGAGTACAGAAGAGGA 58.999 52.381 0.00 0.00 0.00 3.71
2976 3251 2.383855 CTCCCAGGAGTACAGAAGAGG 58.616 57.143 5.47 0.00 37.47 3.69
2998 3273 9.593565 TGAGGTATATTGAGAATGAGAGTACAT 57.406 33.333 0.00 0.00 0.00 2.29
2999 3274 8.996651 TGAGGTATATTGAGAATGAGAGTACA 57.003 34.615 0.00 0.00 0.00 2.90
3005 3280 9.457110 GCGTATATGAGGTATATTGAGAATGAG 57.543 37.037 0.00 0.00 33.96 2.90
3006 3281 8.966868 TGCGTATATGAGGTATATTGAGAATGA 58.033 33.333 0.00 0.00 33.96 2.57
3007 3282 9.755804 ATGCGTATATGAGGTATATTGAGAATG 57.244 33.333 0.00 0.00 33.96 2.67
3072 3347 9.322769 ACTCGTATTGGGGTATCTTAGAATATT 57.677 33.333 0.00 0.00 0.00 1.28
3073 3348 8.896722 ACTCGTATTGGGGTATCTTAGAATAT 57.103 34.615 0.00 0.00 0.00 1.28
3074 3349 8.716674 AACTCGTATTGGGGTATCTTAGAATA 57.283 34.615 0.00 0.00 0.00 1.75
3075 3350 7.613551 AACTCGTATTGGGGTATCTTAGAAT 57.386 36.000 0.00 0.00 0.00 2.40
3076 3351 7.427989 AAACTCGTATTGGGGTATCTTAGAA 57.572 36.000 0.00 0.00 0.00 2.10
3077 3352 7.093201 ACAAAACTCGTATTGGGGTATCTTAGA 60.093 37.037 0.00 0.00 0.00 2.10
3078 3353 7.046033 ACAAAACTCGTATTGGGGTATCTTAG 58.954 38.462 0.00 0.00 0.00 2.18
3079 3354 6.949715 ACAAAACTCGTATTGGGGTATCTTA 58.050 36.000 0.00 0.00 0.00 2.10
3080 3355 5.812286 ACAAAACTCGTATTGGGGTATCTT 58.188 37.500 0.00 0.00 0.00 2.40
3081 3356 5.431179 ACAAAACTCGTATTGGGGTATCT 57.569 39.130 0.00 0.00 0.00 1.98
3082 3357 7.614124 TTAACAAAACTCGTATTGGGGTATC 57.386 36.000 0.00 0.00 0.00 2.24
3083 3358 7.999450 TTTAACAAAACTCGTATTGGGGTAT 57.001 32.000 0.00 0.00 0.00 2.73
3084 3359 7.814264 TTTTAACAAAACTCGTATTGGGGTA 57.186 32.000 0.00 0.00 0.00 3.69
3085 3360 6.712179 TTTTAACAAAACTCGTATTGGGGT 57.288 33.333 0.00 0.00 0.00 4.95
3108 3383 9.507280 CAAAAAGTACATCGCAGATGATATTTT 57.493 29.630 20.36 17.82 45.12 1.82
3109 3384 8.677300 ACAAAAAGTACATCGCAGATGATATTT 58.323 29.630 20.36 14.59 45.12 1.40
3110 3385 8.213518 ACAAAAAGTACATCGCAGATGATATT 57.786 30.769 20.36 10.96 45.12 1.28
3111 3386 7.495606 TGACAAAAAGTACATCGCAGATGATAT 59.504 33.333 20.36 5.76 45.12 1.63
3112 3387 6.816140 TGACAAAAAGTACATCGCAGATGATA 59.184 34.615 20.36 9.62 45.12 2.15
3113 3388 5.643348 TGACAAAAAGTACATCGCAGATGAT 59.357 36.000 20.36 10.35 45.12 2.45
3114 3389 4.994217 TGACAAAAAGTACATCGCAGATGA 59.006 37.500 20.36 6.22 45.12 2.92
3115 3390 5.281693 TGACAAAAAGTACATCGCAGATG 57.718 39.130 14.34 14.34 45.12 2.90
3116 3391 7.792374 ATATGACAAAAAGTACATCGCAGAT 57.208 32.000 0.00 0.00 45.12 2.90
3117 3392 7.223971 GGTATATGACAAAAAGTACATCGCAGA 59.776 37.037 0.00 0.00 45.75 4.26
3118 3393 7.224753 AGGTATATGACAAAAAGTACATCGCAG 59.775 37.037 0.00 0.00 0.00 5.18
3119 3394 7.045416 AGGTATATGACAAAAAGTACATCGCA 58.955 34.615 0.00 0.00 0.00 5.10
3120 3395 7.478520 AGGTATATGACAAAAAGTACATCGC 57.521 36.000 0.00 0.00 0.00 4.58
3139 3414 8.855110 TGATGTGTTTGTATGTGAAAAAGGTAT 58.145 29.630 0.00 0.00 0.00 2.73
3140 3415 8.226819 TGATGTGTTTGTATGTGAAAAAGGTA 57.773 30.769 0.00 0.00 0.00 3.08
3141 3416 7.106439 TGATGTGTTTGTATGTGAAAAAGGT 57.894 32.000 0.00 0.00 0.00 3.50
3142 3417 7.202526 ACTGATGTGTTTGTATGTGAAAAAGG 58.797 34.615 0.00 0.00 0.00 3.11
3143 3418 9.897744 ATACTGATGTGTTTGTATGTGAAAAAG 57.102 29.630 0.00 0.00 0.00 2.27
3148 3423 9.458374 CGTATATACTGATGTGTTTGTATGTGA 57.542 33.333 11.05 0.00 0.00 3.58
3149 3424 9.244799 ACGTATATACTGATGTGTTTGTATGTG 57.755 33.333 11.05 0.00 0.00 3.21
3154 3429 9.642327 TGTTTACGTATATACTGATGTGTTTGT 57.358 29.630 11.05 0.59 0.00 2.83
3208 3483 5.131809 ACCCCAAAATGAGTTCCATGAAAAA 59.868 36.000 0.00 0.00 35.24 1.94
3209 3484 4.657969 ACCCCAAAATGAGTTCCATGAAAA 59.342 37.500 0.00 0.00 35.24 2.29
3210 3485 4.230455 ACCCCAAAATGAGTTCCATGAAA 58.770 39.130 0.00 0.00 35.24 2.69
3211 3486 3.855668 ACCCCAAAATGAGTTCCATGAA 58.144 40.909 0.00 0.00 35.24 2.57
3212 3487 3.541242 ACCCCAAAATGAGTTCCATGA 57.459 42.857 0.00 0.00 35.24 3.07
3213 3488 5.203528 AGATACCCCAAAATGAGTTCCATG 58.796 41.667 0.00 0.00 35.24 3.66
3214 3489 5.472301 AGATACCCCAAAATGAGTTCCAT 57.528 39.130 0.00 0.00 36.99 3.41
3215 3490 4.946160 AGATACCCCAAAATGAGTTCCA 57.054 40.909 0.00 0.00 0.00 3.53
3216 3491 8.990163 TTATTAGATACCCCAAAATGAGTTCC 57.010 34.615 0.00 0.00 0.00 3.62
3283 3558 9.311916 GCTTCTCATATACCACATAGATGAATC 57.688 37.037 0.00 0.00 40.23 2.52
3284 3559 7.978414 CGCTTCTCATATACCACATAGATGAAT 59.022 37.037 0.00 0.00 40.23 2.57
3285 3560 7.315890 CGCTTCTCATATACCACATAGATGAA 58.684 38.462 0.00 0.00 40.23 2.57
3286 3561 6.127619 CCGCTTCTCATATACCACATAGATGA 60.128 42.308 0.00 0.00 38.83 2.92
3287 3562 6.038985 CCGCTTCTCATATACCACATAGATG 58.961 44.000 0.00 0.00 34.34 2.90
3288 3563 5.127845 CCCGCTTCTCATATACCACATAGAT 59.872 44.000 0.00 0.00 0.00 1.98
3289 3564 4.462834 CCCGCTTCTCATATACCACATAGA 59.537 45.833 0.00 0.00 0.00 1.98
3290 3565 4.462834 TCCCGCTTCTCATATACCACATAG 59.537 45.833 0.00 0.00 0.00 2.23
3291 3566 4.412843 TCCCGCTTCTCATATACCACATA 58.587 43.478 0.00 0.00 0.00 2.29
3292 3567 3.239449 TCCCGCTTCTCATATACCACAT 58.761 45.455 0.00 0.00 0.00 3.21
3293 3568 2.628178 CTCCCGCTTCTCATATACCACA 59.372 50.000 0.00 0.00 0.00 4.17
3294 3569 2.628657 ACTCCCGCTTCTCATATACCAC 59.371 50.000 0.00 0.00 0.00 4.16
3295 3570 2.958818 ACTCCCGCTTCTCATATACCA 58.041 47.619 0.00 0.00 0.00 3.25
3296 3571 3.119919 CGTACTCCCGCTTCTCATATACC 60.120 52.174 0.00 0.00 0.00 2.73
3297 3572 3.501445 ACGTACTCCCGCTTCTCATATAC 59.499 47.826 0.00 0.00 0.00 1.47
3298 3573 3.748083 ACGTACTCCCGCTTCTCATATA 58.252 45.455 0.00 0.00 0.00 0.86
3299 3574 2.584236 ACGTACTCCCGCTTCTCATAT 58.416 47.619 0.00 0.00 0.00 1.78
3300 3575 2.048444 ACGTACTCCCGCTTCTCATA 57.952 50.000 0.00 0.00 0.00 2.15
3301 3576 1.674962 GTACGTACTCCCGCTTCTCAT 59.325 52.381 18.47 0.00 0.00 2.90
3302 3577 1.089920 GTACGTACTCCCGCTTCTCA 58.910 55.000 18.47 0.00 0.00 3.27
3303 3578 1.330213 GAGTACGTACTCCCGCTTCTC 59.670 57.143 35.45 15.35 45.33 2.87
3304 3579 1.377536 GAGTACGTACTCCCGCTTCT 58.622 55.000 35.45 10.83 45.33 2.85
3305 3580 3.914024 GAGTACGTACTCCCGCTTC 57.086 57.895 35.45 16.65 45.33 3.86
3321 3596 1.348064 TGGTTGTGTACTCCTGGGAG 58.652 55.000 14.44 14.44 46.91 4.30
3322 3597 2.038863 ATGGTTGTGTACTCCTGGGA 57.961 50.000 0.00 0.00 0.00 4.37
3323 3598 2.879103 AATGGTTGTGTACTCCTGGG 57.121 50.000 0.00 0.00 0.00 4.45
3324 3599 3.506067 GGAAAATGGTTGTGTACTCCTGG 59.494 47.826 0.00 0.00 0.00 4.45
3325 3600 4.398319 AGGAAAATGGTTGTGTACTCCTG 58.602 43.478 0.00 0.00 30.85 3.86
3326 3601 4.724279 AGGAAAATGGTTGTGTACTCCT 57.276 40.909 0.00 0.00 0.00 3.69
3353 3628 9.841295 GGTGGTAGAAAACATTTGTCCTATATA 57.159 33.333 0.00 0.00 0.00 0.86
3354 3629 8.333235 TGGTGGTAGAAAACATTTGTCCTATAT 58.667 33.333 0.00 0.00 0.00 0.86
3355 3630 7.691213 TGGTGGTAGAAAACATTTGTCCTATA 58.309 34.615 0.00 0.00 0.00 1.31
3356 3631 6.548321 TGGTGGTAGAAAACATTTGTCCTAT 58.452 36.000 0.00 0.00 0.00 2.57
3357 3632 5.942961 TGGTGGTAGAAAACATTTGTCCTA 58.057 37.500 0.00 0.00 0.00 2.94
3358 3633 4.798882 TGGTGGTAGAAAACATTTGTCCT 58.201 39.130 0.00 0.00 0.00 3.85
3359 3634 4.583073 ACTGGTGGTAGAAAACATTTGTCC 59.417 41.667 0.00 0.00 0.00 4.02
3360 3635 5.507315 CCACTGGTGGTAGAAAACATTTGTC 60.507 44.000 11.29 0.00 45.53 3.18
3361 3636 4.340950 CCACTGGTGGTAGAAAACATTTGT 59.659 41.667 11.29 0.00 45.53 2.83
3362 3637 4.870363 CCACTGGTGGTAGAAAACATTTG 58.130 43.478 11.29 0.00 45.53 2.32
3383 3658 8.469309 TCTGTATATAAGTGGTGGTAACTACC 57.531 38.462 0.00 0.00 46.62 3.18
3385 3660 9.871175 TGATCTGTATATAAGTGGTGGTAACTA 57.129 33.333 0.00 0.00 37.61 2.24
3386 3661 8.777578 TGATCTGTATATAAGTGGTGGTAACT 57.222 34.615 0.00 0.00 37.61 2.24
3387 3662 9.257651 GTTGATCTGTATATAAGTGGTGGTAAC 57.742 37.037 0.00 0.00 0.00 2.50
3388 3663 8.983789 TGTTGATCTGTATATAAGTGGTGGTAA 58.016 33.333 0.00 0.00 0.00 2.85
3389 3664 8.541899 TGTTGATCTGTATATAAGTGGTGGTA 57.458 34.615 0.00 0.00 0.00 3.25
3390 3665 7.432148 TGTTGATCTGTATATAAGTGGTGGT 57.568 36.000 0.00 0.00 0.00 4.16
3391 3666 8.908786 AATGTTGATCTGTATATAAGTGGTGG 57.091 34.615 0.00 0.00 0.00 4.61
3404 3679 9.725019 TCACTTTGACTTATAATGTTGATCTGT 57.275 29.630 0.00 0.00 0.00 3.41
3420 3695 7.148086 TGCAGTTAAAATGTTCTCACTTTGACT 60.148 33.333 0.00 0.00 39.11 3.41
3421 3696 6.972328 TGCAGTTAAAATGTTCTCACTTTGAC 59.028 34.615 0.00 0.00 32.27 3.18
3422 3697 7.094508 TGCAGTTAAAATGTTCTCACTTTGA 57.905 32.000 0.00 0.00 0.00 2.69
3423 3698 7.489113 AGTTGCAGTTAAAATGTTCTCACTTTG 59.511 33.333 0.00 0.00 0.00 2.77
3425 3700 7.100458 AGTTGCAGTTAAAATGTTCTCACTT 57.900 32.000 0.00 0.00 0.00 3.16
3426 3701 6.699575 AGTTGCAGTTAAAATGTTCTCACT 57.300 33.333 0.00 0.00 0.00 3.41
3455 3730 7.918076 ACACCTCCTAAGAGATGAAACATTTA 58.082 34.615 0.00 0.00 43.39 1.40
3476 3751 3.493873 GGGTGGATCCGATAGTTTACACC 60.494 52.174 7.39 4.64 44.73 4.16
3534 3816 7.015974 AGCTTCAAGAATTTCTTTTCCCTGAAT 59.984 33.333 8.95 0.00 33.78 2.57
3536 3818 5.835280 AGCTTCAAGAATTTCTTTTCCCTGA 59.165 36.000 8.95 0.94 33.78 3.86
3606 3891 9.695526 CAAATTTGTTGAGATTCTAATGTTCCA 57.304 29.630 10.15 0.00 0.00 3.53
3608 3893 9.696917 ACCAAATTTGTTGAGATTCTAATGTTC 57.303 29.630 16.73 0.00 0.00 3.18
3680 4001 1.352687 GGCCAGGGATAATCCTCCTTC 59.647 57.143 0.00 0.00 36.57 3.46
3684 4005 1.627834 CAGAGGCCAGGGATAATCCTC 59.372 57.143 5.01 1.14 42.68 3.71
3691 4012 1.284111 TTGATGCAGAGGCCAGGGAT 61.284 55.000 5.01 0.00 40.13 3.85
3741 4082 7.033185 ACAAACAGACAATTGAAACTGTAACC 58.967 34.615 24.81 2.26 41.73 2.85
3798 4139 4.442375 ACTAGTTCATTGTCTCTCCACG 57.558 45.455 0.00 0.00 0.00 4.94
3941 4282 3.518303 ACCTTAAACAGACCGCTAAGGAT 59.482 43.478 12.49 0.00 41.99 3.24
4056 4397 7.335627 TGTCCTCAATATTTCCTGAATAACGT 58.664 34.615 0.00 0.00 34.06 3.99
4064 4405 7.417116 CCCAAGAAATGTCCTCAATATTTCCTG 60.417 40.741 0.00 0.00 43.06 3.86
4094 4435 6.028146 TGTTGAATGACTTGAATGGAATGG 57.972 37.500 0.00 0.00 0.00 3.16
4095 4436 7.949903 TTTGTTGAATGACTTGAATGGAATG 57.050 32.000 0.00 0.00 0.00 2.67
4157 4498 1.148310 AACTTCAGTTCGGATGTGCG 58.852 50.000 0.00 0.00 31.64 5.34
4165 4506 5.666969 TGTTTGACCATAACTTCAGTTCG 57.333 39.130 0.00 0.00 39.31 3.95
4307 4648 9.476202 AAAGTAGTAAATGAAAATGAGCAAACC 57.524 29.630 0.00 0.00 0.00 3.27
4391 4732 6.071672 TGGCACGATGAATATTGGAAGAAAAA 60.072 34.615 0.00 0.00 0.00 1.94
4411 4752 4.152223 GGAGTAATTGTTTTTGCATGGCAC 59.848 41.667 0.00 0.00 38.71 5.01
4479 4820 9.575783 CCGTCCTATAATATAAGAGCTTTCTTC 57.424 37.037 0.00 0.00 0.00 2.87
4482 4823 8.192110 CCTCCGTCCTATAATATAAGAGCTTTC 58.808 40.741 0.00 0.00 0.00 2.62
4499 4840 2.249139 GCAATATACTCCCTCCGTCCT 58.751 52.381 0.00 0.00 0.00 3.85
4535 4876 0.324738 TGCTCAGGGAGTCAGGGTAG 60.325 60.000 0.00 0.00 31.39 3.18
4920 5262 0.320374 GTCTCCACCATGTCGGACAA 59.680 55.000 15.72 0.00 38.63 3.18
4990 5332 5.412640 TGGTAATGGTAAGATACACGTGTG 58.587 41.667 30.83 0.53 0.00 3.82
5025 5367 1.547372 GCCTTCACATTTGCCATCTGT 59.453 47.619 0.00 0.00 0.00 3.41
5291 5633 7.264947 CGTAAATTTTAAGGGATGGAAGCATT 58.735 34.615 0.00 0.00 0.00 3.56
5328 5670 4.515191 CCGAAATGAGTGGAACAGAAAAGA 59.485 41.667 0.00 0.00 41.80 2.52
5329 5671 4.515191 TCCGAAATGAGTGGAACAGAAAAG 59.485 41.667 0.00 0.00 41.80 2.27
5330 5672 4.456535 TCCGAAATGAGTGGAACAGAAAA 58.543 39.130 0.00 0.00 41.80 2.29
5331 5673 4.065088 CTCCGAAATGAGTGGAACAGAAA 58.935 43.478 0.00 0.00 41.80 2.52
5332 5674 3.664107 CTCCGAAATGAGTGGAACAGAA 58.336 45.455 0.00 0.00 41.80 3.02
5333 5675 2.612972 GCTCCGAAATGAGTGGAACAGA 60.613 50.000 0.00 0.00 41.80 3.41
5376 5718 3.776340 TCGATACATAACGCAGCTTTCA 58.224 40.909 0.00 0.00 0.00 2.69
5395 5737 4.768130 TCTTTTCTGTCTCCTACACTCG 57.232 45.455 0.00 0.00 33.45 4.18
5909 6288 5.497474 ACCATATCCACCTCAACTGTTAAC 58.503 41.667 0.00 0.00 0.00 2.01
5985 6364 2.633967 TCAACTGGGTAACGCTAAGGAA 59.366 45.455 0.00 0.00 37.60 3.36
6208 6592 6.208797 GTCTTTAGTTAGCACAAATCCCCTTT 59.791 38.462 0.00 0.00 0.00 3.11
6248 6632 2.543777 TGTCGCTTCCTTGCTAGTTT 57.456 45.000 0.00 0.00 0.00 2.66
6271 6655 5.344128 GTCTCATCGCGAGTACAAAAACTAA 59.656 40.000 16.66 0.00 42.88 2.24
6287 6671 9.831737 AAGAAAAACTATTTGATTGTCTCATCG 57.168 29.630 0.00 0.00 32.72 3.84
6342 6726 3.520290 AGACGCTATTTGAATGACCGA 57.480 42.857 0.00 0.00 0.00 4.69
6344 6728 7.472543 ACAATTTAGACGCTATTTGAATGACC 58.527 34.615 12.53 0.00 0.00 4.02
6365 6749 5.678616 GCAACGTTTATGGGCAGATAACAAT 60.679 40.000 0.00 0.00 0.00 2.71
6369 6753 2.685897 GGCAACGTTTATGGGCAGATAA 59.314 45.455 0.00 0.00 0.00 1.75
6430 6814 4.804597 TCTACATAGGAAGCAGCCTAAGA 58.195 43.478 12.30 7.19 43.39 2.10
6483 6868 9.671279 CCAATGAGCACAAGGATATATAACATA 57.329 33.333 0.58 0.00 0.00 2.29
6484 6869 7.121759 GCCAATGAGCACAAGGATATATAACAT 59.878 37.037 9.61 0.00 0.00 2.71
6485 6870 6.430925 GCCAATGAGCACAAGGATATATAACA 59.569 38.462 9.61 0.00 0.00 2.41
6486 6871 6.127897 GGCCAATGAGCACAAGGATATATAAC 60.128 42.308 0.00 0.00 0.00 1.89
6496 6881 0.896940 ACAGGGCCAATGAGCACAAG 60.897 55.000 13.73 0.00 39.23 3.16
6503 6888 3.384168 AGACTACATACAGGGCCAATGA 58.616 45.455 17.27 0.00 0.00 2.57
6517 6902 7.654022 TCCATGATGTGTAATGTAGACTACA 57.346 36.000 17.43 17.43 43.80 2.74
6526 6911 8.559536 GTGGTTAGTATTCCATGATGTGTAATG 58.440 37.037 0.00 0.00 36.09 1.90
6527 6912 8.494433 AGTGGTTAGTATTCCATGATGTGTAAT 58.506 33.333 0.00 0.00 36.09 1.89
6545 6930 6.598064 CCCACACTTCCTTAAATAGTGGTTAG 59.402 42.308 0.00 1.06 42.70 2.34
6546 6931 6.044637 ACCCACACTTCCTTAAATAGTGGTTA 59.955 38.462 0.00 0.00 42.70 2.85
6557 6942 1.373435 CCGCACCCACACTTCCTTA 59.627 57.895 0.00 0.00 0.00 2.69
6562 6947 2.518349 CCAACCGCACCCACACTT 60.518 61.111 0.00 0.00 0.00 3.16
6569 6954 4.265056 ACCCACTCCAACCGCACC 62.265 66.667 0.00 0.00 0.00 5.01
6584 6969 1.143073 AGGAAAACCTCACTGTCCACC 59.857 52.381 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.