Multiple sequence alignment - TraesCS2A01G267000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G267000 chr2A 100.000 5689 0 0 999 6687 425029673 425023985 0.000000e+00 10506.0
1 TraesCS2A01G267000 chr2A 94.928 828 37 4 4542 5364 380539678 380540505 0.000000e+00 1291.0
2 TraesCS2A01G267000 chr2A 100.000 650 0 0 1 650 425030671 425030022 0.000000e+00 1201.0
3 TraesCS2A01G267000 chr2A 94.373 391 19 3 9 398 688761178 688761566 1.240000e-166 597.0
4 TraesCS2A01G267000 chr2A 90.661 439 36 2 9 446 489723138 489723572 4.500000e-161 579.0
5 TraesCS2A01G267000 chr2A 89.685 349 35 1 4178 4525 604375667 604376015 1.710000e-120 444.0
6 TraesCS2A01G267000 chr1A 94.599 3962 189 18 2741 6687 7986064 7982113 0.000000e+00 6107.0
7 TraesCS2A01G267000 chr1A 94.810 1715 79 6 999 2706 7987768 7986057 0.000000e+00 2665.0
8 TraesCS2A01G267000 chr1A 88.908 568 51 8 1908 2471 282827426 282827985 0.000000e+00 689.0
9 TraesCS2A01G267000 chrUn 95.438 3266 133 11 2741 5996 268292415 268295674 0.000000e+00 5192.0
10 TraesCS2A01G267000 chrUn 95.218 1192 53 4 1426 2616 268290976 268292164 0.000000e+00 1882.0
11 TraesCS2A01G267000 chr7B 91.293 2343 173 18 4361 6686 666895047 666892719 0.000000e+00 3168.0
12 TraesCS2A01G267000 chr7B 91.243 2341 180 15 4361 6686 666855609 666853279 0.000000e+00 3164.0
13 TraesCS2A01G267000 chr7B 90.765 2339 177 20 4361 6683 666869597 666867282 0.000000e+00 3086.0
14 TraesCS2A01G267000 chr7B 87.529 1716 183 18 4996 6687 90450405 90452113 0.000000e+00 1954.0
15 TraesCS2A01G267000 chr7B 91.979 187 14 1 1025 1210 478013105 478012919 1.850000e-65 261.0
16 TraesCS2A01G267000 chr4D 92.557 2163 125 18 4542 6687 249165242 249163099 0.000000e+00 3070.0
17 TraesCS2A01G267000 chr4D 95.356 926 39 3 4542 5463 266760820 266759895 0.000000e+00 1469.0
18 TraesCS2A01G267000 chr4D 89.586 893 85 7 5797 6687 441582148 441583034 0.000000e+00 1127.0
19 TraesCS2A01G267000 chr4D 96.229 663 23 2 3579 4240 332620593 332621254 0.000000e+00 1085.0
20 TraesCS2A01G267000 chr4D 91.055 436 29 5 9 436 395861442 395861875 1.250000e-161 580.0
21 TraesCS2A01G267000 chr4D 96.587 293 9 1 2561 2853 255556100 255556391 1.010000e-132 484.0
22 TraesCS2A01G267000 chr4D 95.033 302 13 2 2561 2861 273924420 273924720 2.180000e-129 473.0
23 TraesCS2A01G267000 chr4D 94.684 301 15 1 2561 2861 214961091 214960792 3.650000e-127 466.0
24 TraesCS2A01G267000 chr4D 88.796 357 31 5 2218 2571 256716889 256716539 4.790000e-116 429.0
25 TraesCS2A01G267000 chr4D 97.727 44 0 1 493 536 441535767 441535809 2.590000e-09 75.0
26 TraesCS2A01G267000 chr6B 94.310 949 49 3 3589 4536 637188381 637187437 0.000000e+00 1448.0
27 TraesCS2A01G267000 chr6B 84.174 1308 166 28 5401 6687 401018554 401017267 0.000000e+00 1230.0
28 TraesCS2A01G267000 chr6B 89.066 878 85 8 5812 6687 221734946 221734078 0.000000e+00 1079.0
29 TraesCS2A01G267000 chr6B 94.135 665 36 3 3579 4243 269791717 269791056 0.000000e+00 1009.0
30 TraesCS2A01G267000 chr6B 90.930 441 36 4 9 446 489223796 489224235 2.080000e-164 590.0
31 TraesCS2A01G267000 chr6B 89.385 358 37 1 4178 4534 591317465 591317108 3.680000e-122 449.0
32 TraesCS2A01G267000 chr6B 94.198 293 15 2 2561 2853 85650323 85650033 4.760000e-121 446.0
33 TraesCS2A01G267000 chr6B 89.640 222 19 4 1030 1249 361274646 361274427 5.110000e-71 279.0
34 TraesCS2A01G267000 chr4B 93.006 958 65 2 3579 4536 338492434 338491479 0.000000e+00 1397.0
35 TraesCS2A01G267000 chr4B 86.320 519 58 8 2056 2571 198549967 198549459 2.730000e-153 553.0
36 TraesCS2A01G267000 chr4B 89.266 354 37 1 4178 4530 283189433 283189080 6.150000e-120 442.0
37 TraesCS2A01G267000 chr6A 95.673 832 30 6 4542 5368 121236593 121237423 0.000000e+00 1332.0
38 TraesCS2A01G267000 chr6A 88.710 930 98 7 5763 6687 533012249 533011322 0.000000e+00 1129.0
39 TraesCS2A01G267000 chr6A 90.896 670 46 9 1907 2571 382784607 382783948 0.000000e+00 885.0
40 TraesCS2A01G267000 chr6A 94.257 296 13 2 2561 2853 347375620 347375326 3.680000e-122 449.0
41 TraesCS2A01G267000 chr6A 95.652 69 2 1 386 453 244454511 244454579 7.090000e-20 110.0
42 TraesCS2A01G267000 chr5D 94.699 830 39 4 4542 5366 53009889 53009060 0.000000e+00 1284.0
43 TraesCS2A01G267000 chr5D 95.352 796 29 4 3119 3912 179714813 179715602 0.000000e+00 1258.0
44 TraesCS2A01G267000 chr5D 86.932 880 103 11 5812 6687 428343460 428344331 0.000000e+00 977.0
45 TraesCS2A01G267000 chr5D 94.373 391 21 1 9 398 213875986 213876376 3.450000e-167 599.0
46 TraesCS2A01G267000 chr5D 81.564 716 54 24 1253 1910 8420235 8419540 2.760000e-143 520.0
47 TraesCS2A01G267000 chr5B 95.173 663 30 2 3579 4240 304146152 304146813 0.000000e+00 1046.0
48 TraesCS2A01G267000 chr5B 87.089 883 101 11 5812 6687 541582723 541581847 0.000000e+00 987.0
49 TraesCS2A01G267000 chr5B 86.450 524 46 11 1301 1814 22037332 22037840 9.800000e-153 551.0
50 TraesCS2A01G267000 chr5B 81.870 353 31 18 1585 1906 22037838 22038188 3.980000e-67 267.0
51 TraesCS2A01G267000 chr5B 86.235 247 23 4 1464 1700 8544698 8544453 2.390000e-64 257.0
52 TraesCS2A01G267000 chr5B 90.845 142 10 3 1301 1439 8544828 8544687 3.180000e-43 187.0
53 TraesCS2A01G267000 chr5B 82.667 150 25 1 1062 1210 350013816 350013667 1.510000e-26 132.0
54 TraesCS2A01G267000 chr5B 88.710 62 5 2 999 1058 350013831 350013770 2.590000e-09 75.0
55 TraesCS2A01G267000 chr5B 77.397 146 18 9 493 636 86482682 86482550 9.300000e-09 73.1
56 TraesCS2A01G267000 chr1B 88.269 878 92 7 5812 6687 399627572 399628440 0.000000e+00 1040.0
57 TraesCS2A01G267000 chr1B 89.390 820 78 8 5870 6687 178026677 178025865 0.000000e+00 1024.0
58 TraesCS2A01G267000 chr1B 87.302 882 100 9 5812 6687 363222272 363223147 0.000000e+00 998.0
59 TraesCS2A01G267000 chr1B 88.473 668 49 10 1907 2571 213406775 213406133 0.000000e+00 782.0
60 TraesCS2A01G267000 chr1B 86.275 204 24 4 1048 1250 555875577 555875377 1.130000e-52 219.0
61 TraesCS2A01G267000 chr1B 92.105 152 9 2 1103 1253 292053024 292052875 1.890000e-50 211.0
62 TraesCS2A01G267000 chr1B 95.652 69 3 0 1182 1250 232235101 232235033 1.970000e-20 111.0
63 TraesCS2A01G267000 chr1B 86.747 83 6 4 386 464 411020959 411020878 3.320000e-13 87.9
64 TraesCS2A01G267000 chr2B 94.745 666 30 3 3579 4240 278323390 278324054 0.000000e+00 1031.0
65 TraesCS2A01G267000 chr2B 88.649 555 51 8 1907 2458 312390571 312391116 0.000000e+00 665.0
66 TraesCS2A01G267000 chr2B 88.028 568 56 8 1907 2471 312396827 312397385 0.000000e+00 662.0
67 TraesCS2A01G267000 chr2B 94.629 391 19 1 1 391 721233045 721232657 7.420000e-169 604.0
68 TraesCS2A01G267000 chr7D 96.051 633 15 4 3282 3913 276972111 276972734 0.000000e+00 1022.0
69 TraesCS2A01G267000 chr7D 96.552 145 3 2 3282 3425 224075600 224075743 8.670000e-59 239.0
70 TraesCS2A01G267000 chr7D 86.047 86 11 1 999 1083 400316477 400316392 2.570000e-14 91.6
71 TraesCS2A01G267000 chr5A 95.741 634 19 4 3282 3913 604428078 604428705 0.000000e+00 1014.0
72 TraesCS2A01G267000 chr5A 88.673 565 52 8 1911 2471 15472892 15472336 0.000000e+00 678.0
73 TraesCS2A01G267000 chr5A 86.452 620 56 16 1301 1910 6627903 6627302 0.000000e+00 654.0
74 TraesCS2A01G267000 chr5A 90.291 206 19 1 1045 1249 12670905 12671110 1.110000e-67 268.0
75 TraesCS2A01G267000 chr5A 88.945 199 20 2 1052 1249 139791201 139791398 1.860000e-60 244.0
76 TraesCS2A01G267000 chr7A 95.591 635 19 6 3282 3913 245726338 245726966 0.000000e+00 1009.0
77 TraesCS2A01G267000 chr7A 88.910 523 47 7 2053 2571 370839019 370839534 9.460000e-178 634.0
78 TraesCS2A01G267000 chr7A 89.320 103 11 0 542 644 370800988 370801090 5.440000e-26 130.0
79 TraesCS2A01G267000 chr6D 95.433 635 20 4 3282 3913 252751265 252750637 0.000000e+00 1003.0
80 TraesCS2A01G267000 chr6D 95.904 293 11 1 2561 2853 225583650 225583359 2.180000e-129 473.0
81 TraesCS2A01G267000 chr3B 87.486 879 99 9 5814 6687 640166969 640166097 0.000000e+00 1003.0
82 TraesCS2A01G267000 chr3B 89.325 459 43 5 9 462 698870466 698870923 7.520000e-159 571.0
83 TraesCS2A01G267000 chr3B 95.105 286 13 1 2568 2853 171319061 171319345 3.680000e-122 449.0
84 TraesCS2A01G267000 chr3B 87.013 154 11 7 386 537 341337072 341337218 1.490000e-36 165.0
85 TraesCS2A01G267000 chr3B 94.118 68 4 0 1182 1249 771953356 771953289 3.300000e-18 104.0
86 TraesCS2A01G267000 chr3B 89.412 85 4 5 386 467 531499918 531499836 1.190000e-17 102.0
87 TraesCS2A01G267000 chr3B 85.714 84 9 3 386 467 246973151 246973069 1.190000e-12 86.1
88 TraesCS2A01G267000 chr2D 89.532 726 64 9 5142 5856 418641197 418640473 0.000000e+00 909.0
89 TraesCS2A01G267000 chr2D 94.359 390 21 1 9 397 560876754 560876365 1.240000e-166 597.0
90 TraesCS2A01G267000 chr2D 96.246 293 10 1 2561 2853 287296546 287296837 4.690000e-131 479.0
91 TraesCS2A01G267000 chr2D 92.424 198 13 2 1054 1249 455245958 455245761 1.420000e-71 281.0
92 TraesCS2A01G267000 chr4A 88.953 688 64 9 5137 5814 688483358 688484043 0.000000e+00 839.0
93 TraesCS2A01G267000 chr4A 87.852 568 57 8 1908 2471 576361337 576361896 0.000000e+00 656.0
94 TraesCS2A01G267000 chr3A 89.261 568 49 8 1908 2471 520863346 520863905 0.000000e+00 701.0
95 TraesCS2A01G267000 chr3A 88.360 567 55 7 1908 2471 59682723 59682165 0.000000e+00 671.0
96 TraesCS2A01G267000 chr3D 94.118 391 22 1 9 398 438489557 438489167 1.610000e-165 593.0
97 TraesCS2A01G267000 chr3D 95.904 293 11 1 2561 2853 288682479 288682188 2.180000e-129 473.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G267000 chr2A 425023985 425030671 6686 True 5853.5 10506 100.0000 1 6687 2 chr2A.!!$R1 6686
1 TraesCS2A01G267000 chr2A 380539678 380540505 827 False 1291.0 1291 94.9280 4542 5364 1 chr2A.!!$F1 822
2 TraesCS2A01G267000 chr1A 7982113 7987768 5655 True 4386.0 6107 94.7045 999 6687 2 chr1A.!!$R1 5688
3 TraesCS2A01G267000 chr1A 282827426 282827985 559 False 689.0 689 88.9080 1908 2471 1 chr1A.!!$F1 563
4 TraesCS2A01G267000 chrUn 268290976 268295674 4698 False 3537.0 5192 95.3280 1426 5996 2 chrUn.!!$F1 4570
5 TraesCS2A01G267000 chr7B 666892719 666895047 2328 True 3168.0 3168 91.2930 4361 6686 1 chr7B.!!$R4 2325
6 TraesCS2A01G267000 chr7B 666853279 666855609 2330 True 3164.0 3164 91.2430 4361 6686 1 chr7B.!!$R2 2325
7 TraesCS2A01G267000 chr7B 666867282 666869597 2315 True 3086.0 3086 90.7650 4361 6683 1 chr7B.!!$R3 2322
8 TraesCS2A01G267000 chr7B 90450405 90452113 1708 False 1954.0 1954 87.5290 4996 6687 1 chr7B.!!$F1 1691
9 TraesCS2A01G267000 chr4D 249163099 249165242 2143 True 3070.0 3070 92.5570 4542 6687 1 chr4D.!!$R2 2145
10 TraesCS2A01G267000 chr4D 266759895 266760820 925 True 1469.0 1469 95.3560 4542 5463 1 chr4D.!!$R4 921
11 TraesCS2A01G267000 chr4D 441582148 441583034 886 False 1127.0 1127 89.5860 5797 6687 1 chr4D.!!$F6 890
12 TraesCS2A01G267000 chr4D 332620593 332621254 661 False 1085.0 1085 96.2290 3579 4240 1 chr4D.!!$F3 661
13 TraesCS2A01G267000 chr6B 637187437 637188381 944 True 1448.0 1448 94.3100 3589 4536 1 chr6B.!!$R7 947
14 TraesCS2A01G267000 chr6B 401017267 401018554 1287 True 1230.0 1230 84.1740 5401 6687 1 chr6B.!!$R5 1286
15 TraesCS2A01G267000 chr6B 221734078 221734946 868 True 1079.0 1079 89.0660 5812 6687 1 chr6B.!!$R2 875
16 TraesCS2A01G267000 chr6B 269791056 269791717 661 True 1009.0 1009 94.1350 3579 4243 1 chr6B.!!$R3 664
17 TraesCS2A01G267000 chr4B 338491479 338492434 955 True 1397.0 1397 93.0060 3579 4536 1 chr4B.!!$R3 957
18 TraesCS2A01G267000 chr4B 198549459 198549967 508 True 553.0 553 86.3200 2056 2571 1 chr4B.!!$R1 515
19 TraesCS2A01G267000 chr6A 121236593 121237423 830 False 1332.0 1332 95.6730 4542 5368 1 chr6A.!!$F1 826
20 TraesCS2A01G267000 chr6A 533011322 533012249 927 True 1129.0 1129 88.7100 5763 6687 1 chr6A.!!$R3 924
21 TraesCS2A01G267000 chr6A 382783948 382784607 659 True 885.0 885 90.8960 1907 2571 1 chr6A.!!$R2 664
22 TraesCS2A01G267000 chr5D 53009060 53009889 829 True 1284.0 1284 94.6990 4542 5366 1 chr5D.!!$R2 824
23 TraesCS2A01G267000 chr5D 179714813 179715602 789 False 1258.0 1258 95.3520 3119 3912 1 chr5D.!!$F1 793
24 TraesCS2A01G267000 chr5D 428343460 428344331 871 False 977.0 977 86.9320 5812 6687 1 chr5D.!!$F3 875
25 TraesCS2A01G267000 chr5D 8419540 8420235 695 True 520.0 520 81.5640 1253 1910 1 chr5D.!!$R1 657
26 TraesCS2A01G267000 chr5B 304146152 304146813 661 False 1046.0 1046 95.1730 3579 4240 1 chr5B.!!$F1 661
27 TraesCS2A01G267000 chr5B 541581847 541582723 876 True 987.0 987 87.0890 5812 6687 1 chr5B.!!$R2 875
28 TraesCS2A01G267000 chr5B 22037332 22038188 856 False 409.0 551 84.1600 1301 1906 2 chr5B.!!$F2 605
29 TraesCS2A01G267000 chr1B 399627572 399628440 868 False 1040.0 1040 88.2690 5812 6687 1 chr1B.!!$F2 875
30 TraesCS2A01G267000 chr1B 178025865 178026677 812 True 1024.0 1024 89.3900 5870 6687 1 chr1B.!!$R1 817
31 TraesCS2A01G267000 chr1B 363222272 363223147 875 False 998.0 998 87.3020 5812 6687 1 chr1B.!!$F1 875
32 TraesCS2A01G267000 chr1B 213406133 213406775 642 True 782.0 782 88.4730 1907 2571 1 chr1B.!!$R2 664
33 TraesCS2A01G267000 chr2B 278323390 278324054 664 False 1031.0 1031 94.7450 3579 4240 1 chr2B.!!$F1 661
34 TraesCS2A01G267000 chr2B 312390571 312391116 545 False 665.0 665 88.6490 1907 2458 1 chr2B.!!$F2 551
35 TraesCS2A01G267000 chr2B 312396827 312397385 558 False 662.0 662 88.0280 1907 2471 1 chr2B.!!$F3 564
36 TraesCS2A01G267000 chr7D 276972111 276972734 623 False 1022.0 1022 96.0510 3282 3913 1 chr7D.!!$F2 631
37 TraesCS2A01G267000 chr5A 604428078 604428705 627 False 1014.0 1014 95.7410 3282 3913 1 chr5A.!!$F3 631
38 TraesCS2A01G267000 chr5A 15472336 15472892 556 True 678.0 678 88.6730 1911 2471 1 chr5A.!!$R2 560
39 TraesCS2A01G267000 chr5A 6627302 6627903 601 True 654.0 654 86.4520 1301 1910 1 chr5A.!!$R1 609
40 TraesCS2A01G267000 chr7A 245726338 245726966 628 False 1009.0 1009 95.5910 3282 3913 1 chr7A.!!$F1 631
41 TraesCS2A01G267000 chr7A 370839019 370839534 515 False 634.0 634 88.9100 2053 2571 1 chr7A.!!$F3 518
42 TraesCS2A01G267000 chr6D 252750637 252751265 628 True 1003.0 1003 95.4330 3282 3913 1 chr6D.!!$R2 631
43 TraesCS2A01G267000 chr3B 640166097 640166969 872 True 1003.0 1003 87.4860 5814 6687 1 chr3B.!!$R3 873
44 TraesCS2A01G267000 chr2D 418640473 418641197 724 True 909.0 909 89.5320 5142 5856 1 chr2D.!!$R1 714
45 TraesCS2A01G267000 chr4A 688483358 688484043 685 False 839.0 839 88.9530 5137 5814 1 chr4A.!!$F2 677
46 TraesCS2A01G267000 chr4A 576361337 576361896 559 False 656.0 656 87.8520 1908 2471 1 chr4A.!!$F1 563
47 TraesCS2A01G267000 chr3A 520863346 520863905 559 False 701.0 701 89.2610 1908 2471 1 chr3A.!!$F1 563
48 TraesCS2A01G267000 chr3A 59682165 59682723 558 True 671.0 671 88.3600 1908 2471 1 chr3A.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.037232 GCTGTAGCACGACCCTCTTT 60.037 55.000 0.00 0.00 41.59 2.52 F
552 553 0.038310 CCCCAAGTCCACCTTCTTCC 59.962 60.000 0.00 0.00 0.00 3.46 F
554 555 0.038310 CCAAGTCCACCTTCTTCCCC 59.962 60.000 0.00 0.00 0.00 4.81 F
555 556 0.321653 CAAGTCCACCTTCTTCCCCG 60.322 60.000 0.00 0.00 0.00 5.73 F
562 563 0.324460 ACCTTCTTCCCCGTCTCGAT 60.324 55.000 0.00 0.00 0.00 3.59 F
563 564 0.386113 CCTTCTTCCCCGTCTCGATC 59.614 60.000 0.00 0.00 0.00 3.69 F
1840 2134 0.739112 CAGAGACCGCAAAGGAGCTC 60.739 60.000 4.71 4.71 45.00 4.09 F
1958 2252 1.859427 CTTCACCAAGCGCTGCACAT 61.859 55.000 12.58 0.00 0.00 3.21 F
2914 3383 2.001838 GGGTTTCCTCCTCCTCCCC 61.002 68.421 0.00 0.00 0.00 4.81 F
4131 4617 0.040425 GGCAACAACAACGGCAGTAG 60.040 55.000 0.00 0.00 0.00 2.57 F
4685 5176 0.449786 CGGCGTGTATGCAAAATCCA 59.550 50.000 0.00 0.00 36.28 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1258 1.376037 CACCTTTGCCGAGGAGGAC 60.376 63.158 9.27 0.0 45.00 3.85 R
1584 1616 1.457346 CTAGAAAACCCCAGCAGCAG 58.543 55.000 0.00 0.0 0.00 4.24 R
1886 2180 2.498481 CCAGCATGTTCATTCCCATGTT 59.502 45.455 0.00 0.0 40.42 2.71 R
2304 2603 4.081752 AGTGGTCTTCTACTGATTGCTGAG 60.082 45.833 0.00 0.0 34.17 3.35 R
2322 2621 7.607991 CCAAGATTAGACTGTAAATCAAGTGGT 59.392 37.037 14.31 0.0 35.07 4.16 R
2572 2873 9.832445 AATAAGAAACTTAAACTGAGTGTCTCA 57.168 29.630 0.00 0.0 40.08 3.27 R
2866 3335 0.179181 GAATGAGTGTACGTCGCCGA 60.179 55.000 0.00 0.0 37.88 5.54 R
2942 3411 0.548031 TGATGGAAGGAGGCATGGAC 59.452 55.000 0.00 0.0 0.00 4.02 R
4530 5016 0.108585 AACATGTCAACGCTCCCACT 59.891 50.000 0.00 0.0 0.00 4.00 R
4961 5454 0.101759 CAGCAACAAACAGCAGCAGT 59.898 50.000 0.00 0.0 0.00 4.40 R
6144 6690 1.270094 ACGGATCGTGCTGTTTTCTCA 60.270 47.619 0.00 0.0 39.18 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.906157 ATGGGTTTCATGAATCACCATATC 57.094 37.500 25.47 13.35 35.62 1.63
40 41 5.139727 TGGGTTTCATGAATCACCATATCC 58.860 41.667 24.21 12.44 0.00 2.59
41 42 5.139727 GGGTTTCATGAATCACCATATCCA 58.860 41.667 24.21 0.00 0.00 3.41
42 43 5.242393 GGGTTTCATGAATCACCATATCCAG 59.758 44.000 24.21 0.00 0.00 3.86
43 44 6.064060 GGTTTCATGAATCACCATATCCAGA 58.936 40.000 20.02 0.00 0.00 3.86
44 45 6.206243 GGTTTCATGAATCACCATATCCAGAG 59.794 42.308 20.02 0.00 0.00 3.35
45 46 6.752285 TTCATGAATCACCATATCCAGAGA 57.248 37.500 3.38 0.00 0.00 3.10
46 47 6.947376 TCATGAATCACCATATCCAGAGAT 57.053 37.500 0.00 0.00 36.44 2.75
47 48 7.325725 TCATGAATCACCATATCCAGAGATT 57.674 36.000 0.00 0.00 33.67 2.40
48 49 7.392418 TCATGAATCACCATATCCAGAGATTC 58.608 38.462 0.00 0.00 40.85 2.52
49 50 6.752285 TGAATCACCATATCCAGAGATTCA 57.248 37.500 10.55 10.55 45.11 2.57
50 51 7.325725 TGAATCACCATATCCAGAGATTCAT 57.674 36.000 10.55 0.00 43.51 2.57
51 52 7.392418 TGAATCACCATATCCAGAGATTCATC 58.608 38.462 10.55 0.00 43.51 2.92
52 53 5.397142 TCACCATATCCAGAGATTCATCG 57.603 43.478 0.00 0.00 33.67 3.84
53 54 5.079643 TCACCATATCCAGAGATTCATCGA 58.920 41.667 0.00 0.00 33.67 3.59
54 55 5.047731 TCACCATATCCAGAGATTCATCGAC 60.048 44.000 0.00 0.00 33.67 4.20
55 56 4.835056 ACCATATCCAGAGATTCATCGACA 59.165 41.667 0.00 0.00 33.67 4.35
56 57 5.483231 ACCATATCCAGAGATTCATCGACAT 59.517 40.000 0.00 0.00 33.67 3.06
57 58 6.665248 ACCATATCCAGAGATTCATCGACATA 59.335 38.462 0.00 0.00 33.67 2.29
58 59 7.147932 ACCATATCCAGAGATTCATCGACATAG 60.148 40.741 0.00 0.00 33.67 2.23
59 60 4.511617 TCCAGAGATTCATCGACATAGC 57.488 45.455 0.00 0.00 0.00 2.97
60 61 4.148079 TCCAGAGATTCATCGACATAGCT 58.852 43.478 0.00 0.00 0.00 3.32
61 62 4.586421 TCCAGAGATTCATCGACATAGCTT 59.414 41.667 0.00 0.00 0.00 3.74
62 63 4.685165 CCAGAGATTCATCGACATAGCTTG 59.315 45.833 0.00 0.00 0.00 4.01
63 64 5.288015 CAGAGATTCATCGACATAGCTTGT 58.712 41.667 0.00 0.00 42.79 3.16
64 65 5.752472 CAGAGATTCATCGACATAGCTTGTT 59.248 40.000 0.00 0.00 39.18 2.83
65 66 5.752472 AGAGATTCATCGACATAGCTTGTTG 59.248 40.000 0.00 0.42 39.18 3.33
66 67 4.272018 AGATTCATCGACATAGCTTGTTGC 59.728 41.667 0.00 0.00 39.18 4.17
67 68 2.279741 TCATCGACATAGCTTGTTGCC 58.720 47.619 0.00 0.00 44.23 4.52
68 69 2.009051 CATCGACATAGCTTGTTGCCA 58.991 47.619 0.00 0.00 44.23 4.92
69 70 1.725641 TCGACATAGCTTGTTGCCAG 58.274 50.000 0.00 0.00 44.23 4.85
70 71 0.729116 CGACATAGCTTGTTGCCAGG 59.271 55.000 0.00 0.00 44.23 4.45
71 72 1.826385 GACATAGCTTGTTGCCAGGT 58.174 50.000 0.00 0.00 44.23 4.00
72 73 2.676750 CGACATAGCTTGTTGCCAGGTA 60.677 50.000 0.00 0.00 44.23 3.08
73 74 3.343617 GACATAGCTTGTTGCCAGGTAA 58.656 45.455 0.00 0.00 44.23 2.85
74 75 3.947834 GACATAGCTTGTTGCCAGGTAAT 59.052 43.478 0.00 0.00 44.23 1.89
75 76 3.947834 ACATAGCTTGTTGCCAGGTAATC 59.052 43.478 0.00 0.00 44.23 1.75
76 77 2.887151 AGCTTGTTGCCAGGTAATCT 57.113 45.000 0.00 0.00 44.23 2.40
77 78 3.160679 AGCTTGTTGCCAGGTAATCTT 57.839 42.857 0.00 0.00 44.23 2.40
78 79 3.084786 AGCTTGTTGCCAGGTAATCTTC 58.915 45.455 0.00 0.00 44.23 2.87
79 80 2.164422 GCTTGTTGCCAGGTAATCTTCC 59.836 50.000 0.00 0.00 35.15 3.46
80 81 2.107950 TGTTGCCAGGTAATCTTCCG 57.892 50.000 0.00 0.00 0.00 4.30
81 82 1.349688 TGTTGCCAGGTAATCTTCCGT 59.650 47.619 0.00 0.00 0.00 4.69
82 83 1.737793 GTTGCCAGGTAATCTTCCGTG 59.262 52.381 0.00 0.00 0.00 4.94
83 84 0.981183 TGCCAGGTAATCTTCCGTGT 59.019 50.000 0.00 0.00 0.00 4.49
84 85 1.338674 TGCCAGGTAATCTTCCGTGTG 60.339 52.381 0.00 0.00 0.00 3.82
85 86 1.338769 GCCAGGTAATCTTCCGTGTGT 60.339 52.381 0.00 0.00 0.00 3.72
86 87 2.346803 CCAGGTAATCTTCCGTGTGTG 58.653 52.381 0.00 0.00 0.00 3.82
87 88 2.028476 CCAGGTAATCTTCCGTGTGTGA 60.028 50.000 0.00 0.00 0.00 3.58
88 89 3.556213 CCAGGTAATCTTCCGTGTGTGAA 60.556 47.826 0.00 0.00 0.00 3.18
89 90 4.062293 CAGGTAATCTTCCGTGTGTGAAA 58.938 43.478 0.00 0.00 0.00 2.69
90 91 4.152402 CAGGTAATCTTCCGTGTGTGAAAG 59.848 45.833 0.00 0.00 0.00 2.62
91 92 3.435671 GGTAATCTTCCGTGTGTGAAAGG 59.564 47.826 0.00 0.00 0.00 3.11
92 93 1.523758 ATCTTCCGTGTGTGAAAGGC 58.476 50.000 0.00 0.00 0.00 4.35
93 94 0.179234 TCTTCCGTGTGTGAAAGGCA 59.821 50.000 0.00 0.00 0.00 4.75
94 95 1.202758 TCTTCCGTGTGTGAAAGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
95 96 1.197721 CTTCCGTGTGTGAAAGGCATC 59.802 52.381 0.00 0.00 0.00 3.91
96 97 0.107643 TCCGTGTGTGAAAGGCATCA 59.892 50.000 0.00 0.00 0.00 3.07
97 98 0.950836 CCGTGTGTGAAAGGCATCAA 59.049 50.000 0.00 0.00 0.00 2.57
98 99 1.069022 CCGTGTGTGAAAGGCATCAAG 60.069 52.381 0.00 0.00 0.00 3.02
99 100 1.664016 CGTGTGTGAAAGGCATCAAGC 60.664 52.381 0.00 0.00 44.65 4.01
100 101 1.610522 GTGTGTGAAAGGCATCAAGCT 59.389 47.619 0.00 0.00 44.79 3.74
101 102 2.035066 GTGTGTGAAAGGCATCAAGCTT 59.965 45.455 0.00 0.00 44.79 3.74
102 103 2.294233 TGTGTGAAAGGCATCAAGCTTC 59.706 45.455 0.00 0.00 44.79 3.86
103 104 1.888512 TGTGAAAGGCATCAAGCTTCC 59.111 47.619 0.00 0.00 44.79 3.46
104 105 1.888512 GTGAAAGGCATCAAGCTTCCA 59.111 47.619 0.00 0.00 44.79 3.53
105 106 2.494870 GTGAAAGGCATCAAGCTTCCAT 59.505 45.455 0.00 0.00 44.79 3.41
106 107 2.494471 TGAAAGGCATCAAGCTTCCATG 59.506 45.455 0.00 3.08 44.79 3.66
107 108 0.822164 AAGGCATCAAGCTTCCATGC 59.178 50.000 23.49 23.49 44.79 4.06
108 109 1.065273 GGCATCAAGCTTCCATGCG 59.935 57.895 24.12 3.83 43.32 4.73
109 110 1.378882 GGCATCAAGCTTCCATGCGA 61.379 55.000 24.12 8.63 43.32 5.10
110 111 0.666913 GCATCAAGCTTCCATGCGAT 59.333 50.000 19.38 6.53 41.15 4.58
111 112 1.599667 GCATCAAGCTTCCATGCGATG 60.600 52.381 19.38 17.01 41.15 3.84
112 113 4.769525 GCATCAAGCTTCCATGCGATGG 62.770 54.545 19.38 8.41 45.76 3.51
122 123 2.589798 CATGCGATGGATGGCTTTTT 57.410 45.000 0.00 0.00 32.36 1.94
123 124 2.466846 CATGCGATGGATGGCTTTTTC 58.533 47.619 0.00 0.00 32.36 2.29
124 125 1.543607 TGCGATGGATGGCTTTTTCA 58.456 45.000 0.00 0.00 32.36 2.69
125 126 1.891811 TGCGATGGATGGCTTTTTCAA 59.108 42.857 0.00 0.00 32.36 2.69
126 127 2.298446 TGCGATGGATGGCTTTTTCAAA 59.702 40.909 0.00 0.00 32.36 2.69
127 128 2.667969 GCGATGGATGGCTTTTTCAAAC 59.332 45.455 0.00 0.00 0.00 2.93
128 129 3.614870 GCGATGGATGGCTTTTTCAAACT 60.615 43.478 0.00 0.00 0.00 2.66
129 130 4.168760 CGATGGATGGCTTTTTCAAACTC 58.831 43.478 0.00 0.00 0.00 3.01
130 131 3.641437 TGGATGGCTTTTTCAAACTCG 57.359 42.857 0.00 0.00 0.00 4.18
131 132 3.218453 TGGATGGCTTTTTCAAACTCGA 58.782 40.909 0.00 0.00 0.00 4.04
132 133 3.004315 TGGATGGCTTTTTCAAACTCGAC 59.996 43.478 0.00 0.00 0.00 4.20
133 134 3.004315 GGATGGCTTTTTCAAACTCGACA 59.996 43.478 0.00 0.00 0.00 4.35
134 135 4.321230 GGATGGCTTTTTCAAACTCGACAT 60.321 41.667 0.00 0.00 0.00 3.06
135 136 3.963665 TGGCTTTTTCAAACTCGACATG 58.036 40.909 0.00 0.00 0.00 3.21
136 137 2.726241 GGCTTTTTCAAACTCGACATGC 59.274 45.455 0.00 0.00 0.00 4.06
137 138 2.401720 GCTTTTTCAAACTCGACATGCG 59.598 45.455 0.00 0.00 42.69 4.73
138 139 2.679355 TTTTCAAACTCGACATGCGG 57.321 45.000 9.16 3.96 41.33 5.69
139 140 0.237235 TTTCAAACTCGACATGCGGC 59.763 50.000 9.16 0.00 41.33 6.53
140 141 1.896339 TTCAAACTCGACATGCGGCG 61.896 55.000 0.51 0.51 41.33 6.46
141 142 2.048597 AAACTCGACATGCGGCGA 60.049 55.556 12.98 7.52 41.33 5.54
142 143 1.447838 AAACTCGACATGCGGCGAT 60.448 52.632 12.98 0.00 41.33 4.58
143 144 1.695893 AAACTCGACATGCGGCGATG 61.696 55.000 12.98 14.14 41.33 3.84
144 145 2.583319 CTCGACATGCGGCGATGT 60.583 61.111 12.98 17.43 39.34 3.06
145 146 2.863853 CTCGACATGCGGCGATGTG 61.864 63.158 22.98 14.89 36.67 3.21
146 147 3.928769 CGACATGCGGCGATGTGG 61.929 66.667 22.98 19.04 36.67 4.17
147 148 2.819595 GACATGCGGCGATGTGGT 60.820 61.111 22.98 9.19 36.67 4.16
148 149 2.359850 ACATGCGGCGATGTGGTT 60.360 55.556 12.98 0.00 35.17 3.67
149 150 2.309764 GACATGCGGCGATGTGGTTC 62.310 60.000 22.98 9.96 36.67 3.62
150 151 2.046411 ATGCGGCGATGTGGTTCA 60.046 55.556 12.98 0.00 0.00 3.18
151 152 1.451927 ATGCGGCGATGTGGTTCAT 60.452 52.632 12.98 0.00 39.77 2.57
152 153 1.717791 ATGCGGCGATGTGGTTCATG 61.718 55.000 12.98 0.00 36.83 3.07
153 154 2.404789 CGGCGATGTGGTTCATGC 59.595 61.111 0.00 0.00 36.83 4.06
154 155 2.800736 GGCGATGTGGTTCATGCC 59.199 61.111 0.00 0.00 40.52 4.40
155 156 2.045708 GGCGATGTGGTTCATGCCA 61.046 57.895 12.60 0.00 43.47 4.92
156 157 1.594194 GGCGATGTGGTTCATGCCAA 61.594 55.000 12.60 0.00 43.47 4.52
157 158 0.456653 GCGATGTGGTTCATGCCAAC 60.457 55.000 0.00 0.00 40.68 3.77
158 159 0.880441 CGATGTGGTTCATGCCAACA 59.120 50.000 0.00 0.00 40.68 3.33
159 160 1.269174 CGATGTGGTTCATGCCAACAA 59.731 47.619 0.00 0.00 40.68 2.83
160 161 2.676076 GATGTGGTTCATGCCAACAAC 58.324 47.619 0.00 0.00 40.68 3.32
161 162 1.478631 TGTGGTTCATGCCAACAACA 58.521 45.000 3.88 3.88 37.79 3.33
162 163 1.827344 TGTGGTTCATGCCAACAACAA 59.173 42.857 5.28 0.00 37.28 2.83
163 164 2.234661 TGTGGTTCATGCCAACAACAAA 59.765 40.909 5.28 0.00 37.28 2.83
164 165 3.118482 TGTGGTTCATGCCAACAACAAAT 60.118 39.130 5.28 0.00 37.28 2.32
165 166 4.100035 TGTGGTTCATGCCAACAACAAATA 59.900 37.500 5.28 0.00 37.28 1.40
166 167 5.221601 TGTGGTTCATGCCAACAACAAATAT 60.222 36.000 5.28 0.00 37.28 1.28
167 168 5.120519 GTGGTTCATGCCAACAACAAATATG 59.879 40.000 0.94 0.00 40.68 1.78
168 169 4.093261 GGTTCATGCCAACAACAAATATGC 59.907 41.667 0.32 0.00 0.00 3.14
169 170 4.532314 TCATGCCAACAACAAATATGCA 57.468 36.364 0.00 0.00 0.00 3.96
170 171 4.244066 TCATGCCAACAACAAATATGCAC 58.756 39.130 0.00 0.00 0.00 4.57
171 172 3.740631 TGCCAACAACAAATATGCACA 57.259 38.095 0.00 0.00 0.00 4.57
172 173 4.063998 TGCCAACAACAAATATGCACAA 57.936 36.364 0.00 0.00 0.00 3.33
173 174 3.806521 TGCCAACAACAAATATGCACAAC 59.193 39.130 0.00 0.00 0.00 3.32
174 175 4.057432 GCCAACAACAAATATGCACAACT 58.943 39.130 0.00 0.00 0.00 3.16
175 176 4.511082 GCCAACAACAAATATGCACAACTT 59.489 37.500 0.00 0.00 0.00 2.66
176 177 5.558653 GCCAACAACAAATATGCACAACTTG 60.559 40.000 0.00 0.00 0.00 3.16
177 178 5.752472 CCAACAACAAATATGCACAACTTGA 59.248 36.000 0.00 0.00 0.00 3.02
178 179 6.424509 CCAACAACAAATATGCACAACTTGAT 59.575 34.615 0.00 0.00 0.00 2.57
179 180 7.041916 CCAACAACAAATATGCACAACTTGATT 60.042 33.333 0.00 0.00 0.00 2.57
180 181 7.642071 ACAACAAATATGCACAACTTGATTC 57.358 32.000 0.00 0.00 0.00 2.52
181 182 6.363088 ACAACAAATATGCACAACTTGATTCG 59.637 34.615 0.00 0.00 0.00 3.34
182 183 6.012658 ACAAATATGCACAACTTGATTCGT 57.987 33.333 0.00 0.00 0.00 3.85
183 184 7.139896 ACAAATATGCACAACTTGATTCGTA 57.860 32.000 0.00 0.00 0.00 3.43
184 185 7.761409 ACAAATATGCACAACTTGATTCGTAT 58.239 30.769 0.00 0.00 0.00 3.06
185 186 8.243426 ACAAATATGCACAACTTGATTCGTATT 58.757 29.630 0.00 0.16 0.00 1.89
186 187 8.525876 CAAATATGCACAACTTGATTCGTATTG 58.474 33.333 0.00 0.00 0.00 1.90
187 188 5.878332 ATGCACAACTTGATTCGTATTGA 57.122 34.783 0.00 0.00 0.00 2.57
188 189 5.878332 TGCACAACTTGATTCGTATTGAT 57.122 34.783 0.00 0.00 0.00 2.57
189 190 6.976636 TGCACAACTTGATTCGTATTGATA 57.023 33.333 0.00 0.00 0.00 2.15
190 191 7.552458 TGCACAACTTGATTCGTATTGATAT 57.448 32.000 0.00 0.00 0.00 1.63
191 192 7.630026 TGCACAACTTGATTCGTATTGATATC 58.370 34.615 0.00 0.00 0.00 1.63
192 193 7.495606 TGCACAACTTGATTCGTATTGATATCT 59.504 33.333 3.98 0.00 0.00 1.98
193 194 8.978539 GCACAACTTGATTCGTATTGATATCTA 58.021 33.333 3.98 0.00 0.00 1.98
201 202 8.454894 TGATTCGTATTGATATCTAGACTGAGC 58.545 37.037 9.64 2.82 0.00 4.26
202 203 6.745159 TCGTATTGATATCTAGACTGAGCC 57.255 41.667 9.64 0.00 0.00 4.70
203 204 6.238648 TCGTATTGATATCTAGACTGAGCCA 58.761 40.000 9.64 0.00 0.00 4.75
204 205 6.887002 TCGTATTGATATCTAGACTGAGCCAT 59.113 38.462 9.64 0.00 0.00 4.40
205 206 6.971756 CGTATTGATATCTAGACTGAGCCATG 59.028 42.308 9.64 0.00 0.00 3.66
206 207 6.931790 ATTGATATCTAGACTGAGCCATGT 57.068 37.500 3.98 0.00 0.00 3.21
207 208 8.961634 GTATTGATATCTAGACTGAGCCATGTA 58.038 37.037 3.98 0.00 0.00 2.29
208 209 8.606754 ATTGATATCTAGACTGAGCCATGTAT 57.393 34.615 3.98 0.00 0.00 2.29
209 210 7.637631 TGATATCTAGACTGAGCCATGTATC 57.362 40.000 3.98 0.00 0.00 2.24
210 211 6.605194 TGATATCTAGACTGAGCCATGTATCC 59.395 42.308 3.98 0.00 0.00 2.59
211 212 4.461450 TCTAGACTGAGCCATGTATCCT 57.539 45.455 0.00 0.00 0.00 3.24
212 213 4.148079 TCTAGACTGAGCCATGTATCCTG 58.852 47.826 0.00 0.00 0.00 3.86
213 214 1.415659 AGACTGAGCCATGTATCCTGC 59.584 52.381 0.00 0.00 0.00 4.85
214 215 1.415659 GACTGAGCCATGTATCCTGCT 59.584 52.381 0.00 0.00 36.62 4.24
215 216 1.140452 ACTGAGCCATGTATCCTGCTG 59.860 52.381 0.00 0.00 33.41 4.41
216 217 0.179037 TGAGCCATGTATCCTGCTGC 60.179 55.000 0.00 0.00 33.41 5.25
217 218 0.108207 GAGCCATGTATCCTGCTGCT 59.892 55.000 0.00 0.00 33.41 4.24
218 219 0.179026 AGCCATGTATCCTGCTGCTG 60.179 55.000 0.00 0.00 31.70 4.41
219 220 0.465097 GCCATGTATCCTGCTGCTGT 60.465 55.000 0.00 0.00 0.00 4.40
220 221 1.202687 GCCATGTATCCTGCTGCTGTA 60.203 52.381 0.00 0.00 0.00 2.74
221 222 2.763933 CCATGTATCCTGCTGCTGTAG 58.236 52.381 0.00 1.57 0.00 2.74
232 233 3.289525 GCTGTAGCACGACCCTCT 58.710 61.111 0.00 0.00 41.59 3.69
233 234 1.592223 GCTGTAGCACGACCCTCTT 59.408 57.895 0.00 0.00 41.59 2.85
234 235 0.037232 GCTGTAGCACGACCCTCTTT 60.037 55.000 0.00 0.00 41.59 2.52
235 236 1.608283 GCTGTAGCACGACCCTCTTTT 60.608 52.381 0.00 0.00 41.59 2.27
236 237 2.069273 CTGTAGCACGACCCTCTTTTG 58.931 52.381 0.00 0.00 0.00 2.44
237 238 1.414919 TGTAGCACGACCCTCTTTTGT 59.585 47.619 0.00 0.00 0.00 2.83
238 239 2.158871 TGTAGCACGACCCTCTTTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
239 240 1.308998 AGCACGACCCTCTTTTGTTG 58.691 50.000 0.00 0.00 0.00 3.33
240 241 0.310854 GCACGACCCTCTTTTGTTGG 59.689 55.000 0.00 0.00 0.00 3.77
241 242 1.961793 CACGACCCTCTTTTGTTGGA 58.038 50.000 0.00 0.00 0.00 3.53
242 243 2.504367 CACGACCCTCTTTTGTTGGAT 58.496 47.619 0.00 0.00 0.00 3.41
243 244 3.670625 CACGACCCTCTTTTGTTGGATA 58.329 45.455 0.00 0.00 0.00 2.59
244 245 4.261801 CACGACCCTCTTTTGTTGGATAT 58.738 43.478 0.00 0.00 0.00 1.63
245 246 4.700213 CACGACCCTCTTTTGTTGGATATT 59.300 41.667 0.00 0.00 0.00 1.28
246 247 5.878116 CACGACCCTCTTTTGTTGGATATTA 59.122 40.000 0.00 0.00 0.00 0.98
247 248 6.542370 CACGACCCTCTTTTGTTGGATATTAT 59.458 38.462 0.00 0.00 0.00 1.28
248 249 6.542370 ACGACCCTCTTTTGTTGGATATTATG 59.458 38.462 0.00 0.00 0.00 1.90
249 250 6.542370 CGACCCTCTTTTGTTGGATATTATGT 59.458 38.462 0.00 0.00 0.00 2.29
250 251 7.713507 CGACCCTCTTTTGTTGGATATTATGTA 59.286 37.037 0.00 0.00 0.00 2.29
251 252 9.574516 GACCCTCTTTTGTTGGATATTATGTAT 57.425 33.333 0.00 0.00 0.00 2.29
252 253 9.936329 ACCCTCTTTTGTTGGATATTATGTATT 57.064 29.630 0.00 0.00 0.00 1.89
270 271 9.672086 TTATGTATTGTTGTTAGTTTGAAGCAC 57.328 29.630 0.00 0.00 0.00 4.40
271 272 7.328277 TGTATTGTTGTTAGTTTGAAGCACT 57.672 32.000 0.00 0.00 0.00 4.40
272 273 7.414436 TGTATTGTTGTTAGTTTGAAGCACTC 58.586 34.615 0.00 0.00 0.00 3.51
273 274 4.893424 TGTTGTTAGTTTGAAGCACTCC 57.107 40.909 0.00 0.00 0.00 3.85
274 275 4.523083 TGTTGTTAGTTTGAAGCACTCCT 58.477 39.130 0.00 0.00 0.00 3.69
275 276 4.574828 TGTTGTTAGTTTGAAGCACTCCTC 59.425 41.667 0.00 0.00 0.00 3.71
276 277 4.689612 TGTTAGTTTGAAGCACTCCTCT 57.310 40.909 0.00 0.00 0.00 3.69
277 278 5.801531 TGTTAGTTTGAAGCACTCCTCTA 57.198 39.130 0.00 0.00 0.00 2.43
278 279 5.784177 TGTTAGTTTGAAGCACTCCTCTAG 58.216 41.667 0.00 0.00 0.00 2.43
279 280 5.304614 TGTTAGTTTGAAGCACTCCTCTAGT 59.695 40.000 0.00 0.00 39.81 2.57
280 281 4.965200 AGTTTGAAGCACTCCTCTAGTT 57.035 40.909 0.00 0.00 35.76 2.24
281 282 5.297569 AGTTTGAAGCACTCCTCTAGTTT 57.702 39.130 0.00 0.00 35.76 2.66
282 283 5.059833 AGTTTGAAGCACTCCTCTAGTTTG 58.940 41.667 0.00 0.00 35.76 2.93
283 284 4.955811 TTGAAGCACTCCTCTAGTTTGA 57.044 40.909 0.00 0.00 35.76 2.69
284 285 4.955811 TGAAGCACTCCTCTAGTTTGAA 57.044 40.909 0.00 0.00 35.76 2.69
285 286 4.887748 TGAAGCACTCCTCTAGTTTGAAG 58.112 43.478 0.00 0.00 35.76 3.02
286 287 3.971245 AGCACTCCTCTAGTTTGAAGG 57.029 47.619 0.00 0.00 35.76 3.46
287 288 3.511477 AGCACTCCTCTAGTTTGAAGGA 58.489 45.455 0.00 0.00 35.76 3.36
288 289 4.100373 AGCACTCCTCTAGTTTGAAGGAT 58.900 43.478 0.00 0.00 35.76 3.24
289 290 5.273208 AGCACTCCTCTAGTTTGAAGGATA 58.727 41.667 0.00 0.00 35.76 2.59
290 291 5.362430 AGCACTCCTCTAGTTTGAAGGATAG 59.638 44.000 0.00 0.00 35.76 2.08
291 292 5.361285 GCACTCCTCTAGTTTGAAGGATAGA 59.639 44.000 0.00 0.00 35.76 1.98
292 293 6.041523 GCACTCCTCTAGTTTGAAGGATAGAT 59.958 42.308 0.00 0.00 35.76 1.98
293 294 7.231722 GCACTCCTCTAGTTTGAAGGATAGATA 59.768 40.741 0.00 0.00 35.76 1.98
294 295 8.573035 CACTCCTCTAGTTTGAAGGATAGATAC 58.427 40.741 0.00 0.00 35.76 2.24
295 296 7.726738 ACTCCTCTAGTTTGAAGGATAGATACC 59.273 40.741 0.00 0.00 33.35 2.73
296 297 7.827787 TCCTCTAGTTTGAAGGATAGATACCT 58.172 38.462 0.00 0.00 39.69 3.08
298 299 8.929487 CCTCTAGTTTGAAGGATAGATACCTTT 58.071 37.037 0.00 0.00 46.14 3.11
299 300 9.974980 CTCTAGTTTGAAGGATAGATACCTTTC 57.025 37.037 0.00 0.00 46.14 2.62
300 301 9.716556 TCTAGTTTGAAGGATAGATACCTTTCT 57.283 33.333 0.00 0.00 46.14 2.52
301 302 9.757227 CTAGTTTGAAGGATAGATACCTTTCTG 57.243 37.037 0.00 0.00 46.14 3.02
302 303 8.380742 AGTTTGAAGGATAGATACCTTTCTGA 57.619 34.615 0.00 0.00 46.14 3.27
303 304 8.482128 AGTTTGAAGGATAGATACCTTTCTGAG 58.518 37.037 0.00 0.00 46.14 3.35
304 305 8.478877 GTTTGAAGGATAGATACCTTTCTGAGA 58.521 37.037 0.00 0.00 46.14 3.27
305 306 8.789767 TTGAAGGATAGATACCTTTCTGAGAT 57.210 34.615 0.00 0.00 46.14 2.75
306 307 8.415950 TGAAGGATAGATACCTTTCTGAGATC 57.584 38.462 0.00 0.00 46.14 2.75
307 308 8.007153 TGAAGGATAGATACCTTTCTGAGATCA 58.993 37.037 0.00 0.00 46.14 2.92
308 309 8.789767 AAGGATAGATACCTTTCTGAGATCAA 57.210 34.615 0.00 0.00 44.13 2.57
309 310 8.421249 AGGATAGATACCTTTCTGAGATCAAG 57.579 38.462 0.00 0.00 33.55 3.02
310 311 8.010105 AGGATAGATACCTTTCTGAGATCAAGT 58.990 37.037 0.00 0.00 33.55 3.16
311 312 8.087750 GGATAGATACCTTTCTGAGATCAAGTG 58.912 40.741 0.00 0.00 0.00 3.16
312 313 5.669477 AGATACCTTTCTGAGATCAAGTGC 58.331 41.667 0.00 0.00 0.00 4.40
313 314 3.777106 ACCTTTCTGAGATCAAGTGCA 57.223 42.857 0.00 0.00 0.00 4.57
314 315 4.298103 ACCTTTCTGAGATCAAGTGCAT 57.702 40.909 0.00 0.00 0.00 3.96
315 316 4.260170 ACCTTTCTGAGATCAAGTGCATC 58.740 43.478 0.00 0.00 0.00 3.91
316 317 3.626670 CCTTTCTGAGATCAAGTGCATCC 59.373 47.826 0.00 0.00 0.00 3.51
317 318 4.515361 CTTTCTGAGATCAAGTGCATCCT 58.485 43.478 0.00 0.00 0.00 3.24
318 319 5.396101 CCTTTCTGAGATCAAGTGCATCCTA 60.396 44.000 0.00 0.00 0.00 2.94
319 320 5.682234 TTCTGAGATCAAGTGCATCCTAA 57.318 39.130 0.00 0.00 0.00 2.69
320 321 5.016051 TCTGAGATCAAGTGCATCCTAAC 57.984 43.478 0.00 0.00 0.00 2.34
321 322 4.713814 TCTGAGATCAAGTGCATCCTAACT 59.286 41.667 0.00 0.00 0.00 2.24
322 323 5.016051 TGAGATCAAGTGCATCCTAACTC 57.984 43.478 0.00 0.00 0.00 3.01
323 324 4.467438 TGAGATCAAGTGCATCCTAACTCA 59.533 41.667 0.00 0.00 0.00 3.41
324 325 4.764172 AGATCAAGTGCATCCTAACTCAC 58.236 43.478 0.00 0.00 0.00 3.51
325 326 3.334583 TCAAGTGCATCCTAACTCACC 57.665 47.619 0.00 0.00 0.00 4.02
326 327 2.906389 TCAAGTGCATCCTAACTCACCT 59.094 45.455 0.00 0.00 0.00 4.00
327 328 3.005554 CAAGTGCATCCTAACTCACCTG 58.994 50.000 0.00 0.00 0.00 4.00
328 329 1.065854 AGTGCATCCTAACTCACCTGC 60.066 52.381 0.00 0.00 0.00 4.85
329 330 0.108186 TGCATCCTAACTCACCTGCG 60.108 55.000 0.00 0.00 32.42 5.18
330 331 0.108138 GCATCCTAACTCACCTGCGT 60.108 55.000 0.00 0.00 0.00 5.24
331 332 1.136305 GCATCCTAACTCACCTGCGTA 59.864 52.381 0.00 0.00 0.00 4.42
332 333 2.799917 GCATCCTAACTCACCTGCGTAG 60.800 54.545 0.00 0.00 0.00 3.51
350 351 8.399768 CTGCGTAGGATGTACTGATAATAATG 57.600 38.462 0.00 0.00 0.00 1.90
351 352 8.117813 TGCGTAGGATGTACTGATAATAATGA 57.882 34.615 0.00 0.00 0.00 2.57
352 353 8.749354 TGCGTAGGATGTACTGATAATAATGAT 58.251 33.333 0.00 0.00 0.00 2.45
353 354 9.025020 GCGTAGGATGTACTGATAATAATGATG 57.975 37.037 0.00 0.00 0.00 3.07
354 355 9.521503 CGTAGGATGTACTGATAATAATGATGG 57.478 37.037 0.00 0.00 0.00 3.51
357 358 9.552695 AGGATGTACTGATAATAATGATGGAGA 57.447 33.333 0.00 0.00 0.00 3.71
360 361 9.610705 ATGTACTGATAATAATGATGGAGATGC 57.389 33.333 0.00 0.00 0.00 3.91
361 362 8.819845 TGTACTGATAATAATGATGGAGATGCT 58.180 33.333 0.00 0.00 0.00 3.79
362 363 9.096160 GTACTGATAATAATGATGGAGATGCTG 57.904 37.037 0.00 0.00 0.00 4.41
363 364 7.687388 ACTGATAATAATGATGGAGATGCTGT 58.313 34.615 0.00 0.00 0.00 4.40
364 365 7.606839 ACTGATAATAATGATGGAGATGCTGTG 59.393 37.037 0.00 0.00 0.00 3.66
365 366 6.373495 TGATAATAATGATGGAGATGCTGTGC 59.627 38.462 0.00 0.00 0.00 4.57
366 367 2.430248 AATGATGGAGATGCTGTGCA 57.570 45.000 0.00 0.00 44.86 4.57
367 368 1.968704 ATGATGGAGATGCTGTGCAG 58.031 50.000 0.00 0.00 43.65 4.41
368 369 0.906775 TGATGGAGATGCTGTGCAGA 59.093 50.000 3.02 0.00 43.65 4.26
369 370 1.279846 TGATGGAGATGCTGTGCAGAA 59.720 47.619 3.02 0.00 43.65 3.02
370 371 1.941294 GATGGAGATGCTGTGCAGAAG 59.059 52.381 3.02 0.00 43.65 2.85
371 372 0.689055 TGGAGATGCTGTGCAGAAGT 59.311 50.000 3.02 0.00 43.65 3.01
372 373 1.338484 TGGAGATGCTGTGCAGAAGTC 60.338 52.381 3.02 0.00 43.65 3.01
373 374 1.338484 GGAGATGCTGTGCAGAAGTCA 60.338 52.381 3.02 0.00 43.65 3.41
374 375 2.630158 GAGATGCTGTGCAGAAGTCAT 58.370 47.619 3.02 0.00 43.65 3.06
375 376 3.431346 GGAGATGCTGTGCAGAAGTCATA 60.431 47.826 3.02 0.00 43.65 2.15
376 377 3.529533 AGATGCTGTGCAGAAGTCATAC 58.470 45.455 3.02 0.00 43.65 2.39
377 378 2.837532 TGCTGTGCAGAAGTCATACA 57.162 45.000 3.02 0.00 33.32 2.29
378 379 2.416747 TGCTGTGCAGAAGTCATACAC 58.583 47.619 3.02 0.00 33.32 2.90
379 380 2.224257 TGCTGTGCAGAAGTCATACACA 60.224 45.455 3.02 0.00 38.83 3.72
380 381 2.158449 GCTGTGCAGAAGTCATACACAC 59.842 50.000 3.02 0.00 36.39 3.82
381 382 3.392882 CTGTGCAGAAGTCATACACACA 58.607 45.455 0.00 0.00 36.39 3.72
382 383 3.130633 TGTGCAGAAGTCATACACACAC 58.869 45.455 0.00 0.00 36.39 3.82
383 384 3.130633 GTGCAGAAGTCATACACACACA 58.869 45.455 0.00 0.00 0.00 3.72
384 385 3.059597 GTGCAGAAGTCATACACACACAC 60.060 47.826 0.00 0.00 0.00 3.82
385 386 3.130633 GCAGAAGTCATACACACACACA 58.869 45.455 0.00 0.00 0.00 3.72
386 387 3.748048 GCAGAAGTCATACACACACACAT 59.252 43.478 0.00 0.00 0.00 3.21
387 388 4.929211 GCAGAAGTCATACACACACACATA 59.071 41.667 0.00 0.00 0.00 2.29
388 389 5.582269 GCAGAAGTCATACACACACACATAT 59.418 40.000 0.00 0.00 0.00 1.78
389 390 6.756542 GCAGAAGTCATACACACACACATATA 59.243 38.462 0.00 0.00 0.00 0.86
390 391 7.439356 GCAGAAGTCATACACACACACATATAT 59.561 37.037 0.00 0.00 0.00 0.86
391 392 9.965824 CAGAAGTCATACACACACACATATATA 57.034 33.333 0.00 0.00 0.00 0.86
420 421 6.952773 AGGACTGAGCTATTCTGTTACTAG 57.047 41.667 0.00 0.00 38.01 2.57
421 422 6.428295 AGGACTGAGCTATTCTGTTACTAGT 58.572 40.000 0.00 0.00 38.01 2.57
422 423 7.575505 AGGACTGAGCTATTCTGTTACTAGTA 58.424 38.462 0.00 0.00 38.01 1.82
423 424 8.053963 AGGACTGAGCTATTCTGTTACTAGTAA 58.946 37.037 11.38 11.38 38.01 2.24
424 425 8.130469 GGACTGAGCTATTCTGTTACTAGTAAC 58.870 40.741 30.62 30.62 44.16 2.50
451 452 7.597288 AATATTATTTTGTTACCCTCAGCCC 57.403 36.000 0.00 0.00 0.00 5.19
452 453 4.668138 TTATTTTGTTACCCTCAGCCCT 57.332 40.909 0.00 0.00 0.00 5.19
453 454 2.286365 TTTTGTTACCCTCAGCCCTG 57.714 50.000 0.00 0.00 0.00 4.45
454 455 1.145571 TTTGTTACCCTCAGCCCTGT 58.854 50.000 0.00 0.00 0.00 4.00
455 456 2.032965 TTGTTACCCTCAGCCCTGTA 57.967 50.000 0.00 0.00 0.00 2.74
456 457 2.032965 TGTTACCCTCAGCCCTGTAA 57.967 50.000 0.00 0.00 0.00 2.41
457 458 1.906574 TGTTACCCTCAGCCCTGTAAG 59.093 52.381 0.00 0.00 0.00 2.34
469 470 2.212327 CTGTAAGGGGCCGATCTGT 58.788 57.895 0.00 0.00 0.00 3.41
470 471 1.410004 CTGTAAGGGGCCGATCTGTA 58.590 55.000 0.00 0.00 0.00 2.74
471 472 1.341531 CTGTAAGGGGCCGATCTGTAG 59.658 57.143 0.00 0.00 0.00 2.74
472 473 1.342674 TGTAAGGGGCCGATCTGTAGT 60.343 52.381 0.00 0.00 0.00 2.73
473 474 2.091720 TGTAAGGGGCCGATCTGTAGTA 60.092 50.000 0.00 0.00 0.00 1.82
474 475 2.400467 AAGGGGCCGATCTGTAGTAT 57.600 50.000 0.00 0.00 0.00 2.12
475 476 1.926108 AGGGGCCGATCTGTAGTATC 58.074 55.000 0.00 0.00 0.00 2.24
476 477 0.896226 GGGGCCGATCTGTAGTATCC 59.104 60.000 0.00 0.00 0.00 2.59
477 478 0.526662 GGGCCGATCTGTAGTATCCG 59.473 60.000 0.00 0.00 0.00 4.18
478 479 1.531423 GGCCGATCTGTAGTATCCGA 58.469 55.000 0.00 0.00 0.00 4.55
479 480 1.884579 GGCCGATCTGTAGTATCCGAA 59.115 52.381 0.00 0.00 0.00 4.30
480 481 2.351544 GGCCGATCTGTAGTATCCGAAC 60.352 54.545 0.00 0.00 0.00 3.95
481 482 2.351544 GCCGATCTGTAGTATCCGAACC 60.352 54.545 0.00 0.00 0.00 3.62
482 483 2.095869 CCGATCTGTAGTATCCGAACCG 60.096 54.545 0.00 0.00 0.00 4.44
521 522 1.128200 AAAAGAAAACCCAGCCCACC 58.872 50.000 0.00 0.00 0.00 4.61
522 523 0.762842 AAAGAAAACCCAGCCCACCC 60.763 55.000 0.00 0.00 0.00 4.61
523 524 1.955458 AAGAAAACCCAGCCCACCCA 61.955 55.000 0.00 0.00 0.00 4.51
524 525 2.123033 AAAACCCAGCCCACCCAC 60.123 61.111 0.00 0.00 0.00 4.61
525 526 2.656698 GAAAACCCAGCCCACCCACT 62.657 60.000 0.00 0.00 0.00 4.00
526 527 2.656698 AAAACCCAGCCCACCCACTC 62.657 60.000 0.00 0.00 0.00 3.51
533 534 4.489771 CCCACCCACTCCCGCATC 62.490 72.222 0.00 0.00 0.00 3.91
534 535 4.489771 CCACCCACTCCCGCATCC 62.490 72.222 0.00 0.00 0.00 3.51
535 536 4.489771 CACCCACTCCCGCATCCC 62.490 72.222 0.00 0.00 0.00 3.85
538 539 3.727258 CCACTCCCGCATCCCCAA 61.727 66.667 0.00 0.00 0.00 4.12
539 540 2.124570 CACTCCCGCATCCCCAAG 60.125 66.667 0.00 0.00 0.00 3.61
540 541 2.610859 ACTCCCGCATCCCCAAGT 60.611 61.111 0.00 0.00 0.00 3.16
541 542 2.190578 CTCCCGCATCCCCAAGTC 59.809 66.667 0.00 0.00 0.00 3.01
542 543 3.406595 CTCCCGCATCCCCAAGTCC 62.407 68.421 0.00 0.00 0.00 3.85
543 544 3.727258 CCCGCATCCCCAAGTCCA 61.727 66.667 0.00 0.00 0.00 4.02
544 545 2.438434 CCGCATCCCCAAGTCCAC 60.438 66.667 0.00 0.00 0.00 4.02
545 546 2.438434 CGCATCCCCAAGTCCACC 60.438 66.667 0.00 0.00 0.00 4.61
546 547 2.971598 CGCATCCCCAAGTCCACCT 61.972 63.158 0.00 0.00 0.00 4.00
547 548 1.384191 GCATCCCCAAGTCCACCTT 59.616 57.895 0.00 0.00 0.00 3.50
548 549 0.681243 GCATCCCCAAGTCCACCTTC 60.681 60.000 0.00 0.00 0.00 3.46
549 550 0.995024 CATCCCCAAGTCCACCTTCT 59.005 55.000 0.00 0.00 0.00 2.85
550 551 1.355720 CATCCCCAAGTCCACCTTCTT 59.644 52.381 0.00 0.00 0.00 2.52
551 552 1.064825 TCCCCAAGTCCACCTTCTTC 58.935 55.000 0.00 0.00 0.00 2.87
552 553 0.038310 CCCCAAGTCCACCTTCTTCC 59.962 60.000 0.00 0.00 0.00 3.46
553 554 0.038310 CCCAAGTCCACCTTCTTCCC 59.962 60.000 0.00 0.00 0.00 3.97
554 555 0.038310 CCAAGTCCACCTTCTTCCCC 59.962 60.000 0.00 0.00 0.00 4.81
555 556 0.321653 CAAGTCCACCTTCTTCCCCG 60.322 60.000 0.00 0.00 0.00 5.73
556 557 0.767060 AAGTCCACCTTCTTCCCCGT 60.767 55.000 0.00 0.00 0.00 5.28
557 558 1.192803 AGTCCACCTTCTTCCCCGTC 61.193 60.000 0.00 0.00 0.00 4.79
558 559 1.157751 TCCACCTTCTTCCCCGTCT 59.842 57.895 0.00 0.00 0.00 4.18
559 560 0.903454 TCCACCTTCTTCCCCGTCTC 60.903 60.000 0.00 0.00 0.00 3.36
560 561 1.215647 CACCTTCTTCCCCGTCTCG 59.784 63.158 0.00 0.00 0.00 4.04
561 562 1.076192 ACCTTCTTCCCCGTCTCGA 59.924 57.895 0.00 0.00 0.00 4.04
562 563 0.324460 ACCTTCTTCCCCGTCTCGAT 60.324 55.000 0.00 0.00 0.00 3.59
563 564 0.386113 CCTTCTTCCCCGTCTCGATC 59.614 60.000 0.00 0.00 0.00 3.69
564 565 0.386113 CTTCTTCCCCGTCTCGATCC 59.614 60.000 0.00 0.00 0.00 3.36
565 566 1.041447 TTCTTCCCCGTCTCGATCCC 61.041 60.000 0.00 0.00 0.00 3.85
566 567 2.831742 TTCCCCGTCTCGATCCCG 60.832 66.667 0.00 0.00 37.07 5.14
567 568 4.889112 TCCCCGTCTCGATCCCGG 62.889 72.222 9.78 9.78 41.37 5.73
571 572 4.609247 CGTCTCGATCCCGGCGAC 62.609 72.222 9.30 0.00 35.15 5.19
572 573 3.515286 GTCTCGATCCCGGCGACA 61.515 66.667 9.30 0.00 36.95 4.35
573 574 3.515286 TCTCGATCCCGGCGACAC 61.515 66.667 9.30 0.00 36.24 3.67
574 575 4.570663 CTCGATCCCGGCGACACC 62.571 72.222 9.30 0.00 36.24 4.16
588 589 4.410400 CACCCCGCTCCCACCTTC 62.410 72.222 0.00 0.00 0.00 3.46
589 590 4.658786 ACCCCGCTCCCACCTTCT 62.659 66.667 0.00 0.00 0.00 2.85
590 591 3.787001 CCCCGCTCCCACCTTCTC 61.787 72.222 0.00 0.00 0.00 2.87
591 592 3.787001 CCCGCTCCCACCTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
592 593 3.787001 CCGCTCCCACCTTCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
593 594 3.787001 CGCTCCCACCTTCTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
594 595 3.787001 GCTCCCACCTTCTCCCCG 61.787 72.222 0.00 0.00 0.00 5.73
595 596 3.083997 CTCCCACCTTCTCCCCGG 61.084 72.222 0.00 0.00 0.00 5.73
598 599 4.101448 CCACCTTCTCCCCGGCTG 62.101 72.222 0.00 0.00 0.00 4.85
599 600 4.101448 CACCTTCTCCCCGGCTGG 62.101 72.222 3.88 3.88 0.00 4.85
600 601 4.332543 ACCTTCTCCCCGGCTGGA 62.333 66.667 15.09 0.00 37.49 3.86
601 602 2.770048 CCTTCTCCCCGGCTGGAT 60.770 66.667 15.09 0.00 37.49 3.41
602 603 2.812619 CCTTCTCCCCGGCTGGATC 61.813 68.421 15.09 0.00 37.49 3.36
603 604 2.768344 TTCTCCCCGGCTGGATCC 60.768 66.667 15.09 4.20 37.49 3.36
604 605 4.880426 TCTCCCCGGCTGGATCCC 62.880 72.222 15.09 0.00 37.49 3.85
629 630 3.330720 CCTCGCCCCCACCTTCTT 61.331 66.667 0.00 0.00 0.00 2.52
630 631 2.269241 CTCGCCCCCACCTTCTTC 59.731 66.667 0.00 0.00 0.00 2.87
631 632 3.327404 TCGCCCCCACCTTCTTCC 61.327 66.667 0.00 0.00 0.00 3.46
632 633 4.426313 CGCCCCCACCTTCTTCCC 62.426 72.222 0.00 0.00 0.00 3.97
633 634 4.426313 GCCCCCACCTTCTTCCCG 62.426 72.222 0.00 0.00 0.00 5.14
634 635 3.728373 CCCCCACCTTCTTCCCGG 61.728 72.222 0.00 0.00 0.00 5.73
635 636 4.426313 CCCCACCTTCTTCCCGGC 62.426 72.222 0.00 0.00 0.00 6.13
636 637 4.778143 CCCACCTTCTTCCCGGCG 62.778 72.222 0.00 0.00 0.00 6.46
1036 1037 3.334054 GCCCCTGCTTCCACCTCT 61.334 66.667 0.00 0.00 33.53 3.69
1193 1200 4.103928 GGCCCTCCTCCCCCACTA 62.104 72.222 0.00 0.00 0.00 2.74
1234 1241 2.244117 ATCACTGCAGGCCGTTCGAT 62.244 55.000 19.93 5.18 0.00 3.59
1235 1242 2.434884 ACTGCAGGCCGTTCGATG 60.435 61.111 19.93 0.00 0.00 3.84
1250 1257 4.746309 ATGCCACCACCGCATGCT 62.746 61.111 17.13 0.00 45.11 3.79
1327 1348 2.223180 CGTACATCTCACCGTTCGATCA 60.223 50.000 0.00 0.00 0.00 2.92
1453 1475 3.347590 TCTCTCTGCCCCCTCCGA 61.348 66.667 0.00 0.00 0.00 4.55
1520 1551 2.353605 GGGTCGATTTAACCACCGTACA 60.354 50.000 0.00 0.00 38.62 2.90
1642 1904 4.811969 TTTCTCAAGTAGCACGGGATTA 57.188 40.909 0.00 0.00 0.00 1.75
1706 1976 4.963628 GGGGGACTTCTCTAGTTGTAGATT 59.036 45.833 0.00 0.00 37.17 2.40
1770 2063 9.725019 CTGCAGTATTATACCATGGAATTCTTA 57.275 33.333 21.47 0.00 0.00 2.10
1800 2094 5.048846 TCATAGATAAAAAGTGCCCCCTC 57.951 43.478 0.00 0.00 0.00 4.30
1840 2134 0.739112 CAGAGACCGCAAAGGAGCTC 60.739 60.000 4.71 4.71 45.00 4.09
1901 2195 2.246469 CCACCAACATGGGAATGAACA 58.754 47.619 0.00 0.00 43.37 3.18
1958 2252 1.859427 CTTCACCAAGCGCTGCACAT 61.859 55.000 12.58 0.00 0.00 3.21
2120 2417 2.964978 GGCACCACAACCAGCATC 59.035 61.111 0.00 0.00 0.00 3.91
2185 2482 2.004733 GCCATGGACGTAAACTACACC 58.995 52.381 18.40 0.00 0.00 4.16
2304 2603 6.757026 AAAATGTTTACATGTACAAACGCC 57.243 33.333 15.88 0.00 37.44 5.68
2322 2621 2.159184 CGCCTCAGCAATCAGTAGAAGA 60.159 50.000 0.00 0.00 39.83 2.87
2572 2873 8.429641 TGAAGTCTGTCAGGTTCTTATTTTAGT 58.570 33.333 13.73 0.00 0.00 2.24
2691 3160 7.516198 AGCAATTCTATTGAGTGTTTTCTGT 57.484 32.000 3.70 0.00 0.00 3.41
2699 3168 9.725019 TCTATTGAGTGTTTTCTGTTGATATGT 57.275 29.630 0.00 0.00 0.00 2.29
2700 3169 9.764870 CTATTGAGTGTTTTCTGTTGATATGTG 57.235 33.333 0.00 0.00 0.00 3.21
2701 3170 6.000891 TGAGTGTTTTCTGTTGATATGTGC 57.999 37.500 0.00 0.00 0.00 4.57
2702 3171 5.048782 TGAGTGTTTTCTGTTGATATGTGCC 60.049 40.000 0.00 0.00 0.00 5.01
2703 3172 4.218417 AGTGTTTTCTGTTGATATGTGCCC 59.782 41.667 0.00 0.00 0.00 5.36
2704 3173 4.022416 GTGTTTTCTGTTGATATGTGCCCA 60.022 41.667 0.00 0.00 0.00 5.36
2705 3174 4.586421 TGTTTTCTGTTGATATGTGCCCAA 59.414 37.500 0.00 0.00 0.00 4.12
2706 3175 5.163513 GTTTTCTGTTGATATGTGCCCAAG 58.836 41.667 0.00 0.00 0.00 3.61
2707 3176 3.998913 TCTGTTGATATGTGCCCAAGA 57.001 42.857 0.00 0.00 0.00 3.02
2708 3177 4.299586 TCTGTTGATATGTGCCCAAGAA 57.700 40.909 0.00 0.00 0.00 2.52
2709 3178 4.661222 TCTGTTGATATGTGCCCAAGAAA 58.339 39.130 0.00 0.00 0.00 2.52
2710 3179 4.458989 TCTGTTGATATGTGCCCAAGAAAC 59.541 41.667 0.00 0.00 0.00 2.78
2711 3180 4.148079 TGTTGATATGTGCCCAAGAAACA 58.852 39.130 0.00 0.00 0.00 2.83
2712 3181 4.586421 TGTTGATATGTGCCCAAGAAACAA 59.414 37.500 0.00 0.00 0.00 2.83
2713 3182 5.163513 GTTGATATGTGCCCAAGAAACAAG 58.836 41.667 0.00 0.00 0.00 3.16
2714 3183 4.661222 TGATATGTGCCCAAGAAACAAGA 58.339 39.130 0.00 0.00 0.00 3.02
2715 3184 4.701651 TGATATGTGCCCAAGAAACAAGAG 59.298 41.667 0.00 0.00 0.00 2.85
2716 3185 2.727123 TGTGCCCAAGAAACAAGAGA 57.273 45.000 0.00 0.00 0.00 3.10
2717 3186 3.228188 TGTGCCCAAGAAACAAGAGAT 57.772 42.857 0.00 0.00 0.00 2.75
2718 3187 3.565307 TGTGCCCAAGAAACAAGAGATT 58.435 40.909 0.00 0.00 0.00 2.40
2719 3188 3.569701 TGTGCCCAAGAAACAAGAGATTC 59.430 43.478 0.00 0.00 0.00 2.52
2720 3189 3.823304 GTGCCCAAGAAACAAGAGATTCT 59.177 43.478 0.00 0.00 38.37 2.40
2721 3190 4.279420 GTGCCCAAGAAACAAGAGATTCTT 59.721 41.667 0.00 0.00 44.62 2.52
2722 3191 5.473504 GTGCCCAAGAAACAAGAGATTCTTA 59.526 40.000 0.89 0.00 42.71 2.10
2723 3192 6.151817 GTGCCCAAGAAACAAGAGATTCTTAT 59.848 38.462 0.89 0.00 42.71 1.73
2724 3193 6.721208 TGCCCAAGAAACAAGAGATTCTTATT 59.279 34.615 0.89 0.00 42.71 1.40
2725 3194 7.031975 GCCCAAGAAACAAGAGATTCTTATTG 58.968 38.462 9.72 9.72 42.71 1.90
2726 3195 7.094205 GCCCAAGAAACAAGAGATTCTTATTGA 60.094 37.037 15.53 0.00 42.71 2.57
2727 3196 8.457261 CCCAAGAAACAAGAGATTCTTATTGAG 58.543 37.037 15.53 0.00 42.71 3.02
2728 3197 9.007901 CCAAGAAACAAGAGATTCTTATTGAGT 57.992 33.333 15.53 6.22 42.71 3.41
2734 3203 8.485976 ACAAGAGATTCTTATTGAGTACAAGC 57.514 34.615 15.53 0.00 35.51 4.01
2735 3204 8.317679 ACAAGAGATTCTTATTGAGTACAAGCT 58.682 33.333 15.53 0.00 35.51 3.74
2736 3205 8.816144 CAAGAGATTCTTATTGAGTACAAGCTC 58.184 37.037 0.00 0.00 35.51 4.09
2737 3206 7.496747 AGAGATTCTTATTGAGTACAAGCTCC 58.503 38.462 0.00 0.00 39.46 4.70
2738 3207 7.124901 AGAGATTCTTATTGAGTACAAGCTCCA 59.875 37.037 0.00 0.00 39.46 3.86
2739 3208 7.624549 AGATTCTTATTGAGTACAAGCTCCAA 58.375 34.615 0.00 0.00 39.46 3.53
2886 3355 3.411808 GGCGACGTACACTCATTCA 57.588 52.632 0.00 0.00 0.00 2.57
2914 3383 2.001838 GGGTTTCCTCCTCCTCCCC 61.002 68.421 0.00 0.00 0.00 4.81
2942 3411 2.635229 CTTCCCCCATCGCAGAGACG 62.635 65.000 0.00 0.00 43.63 4.18
2965 3434 0.399454 ATGCCTCCTTCCATCATCGG 59.601 55.000 0.00 0.00 0.00 4.18
2966 3435 1.599240 GCCTCCTTCCATCATCGGC 60.599 63.158 0.00 0.00 0.00 5.54
3023 3492 1.379576 AAATCTGCAGGCCAGCCTC 60.380 57.895 18.54 4.77 46.28 4.70
3256 3728 1.135721 CCCAATAAGCAGCCAGAAAGC 59.864 52.381 0.00 0.00 0.00 3.51
3425 3899 2.754552 ACTTCACTGTGCAAAAGCTCAA 59.245 40.909 2.12 0.00 0.00 3.02
3774 4255 9.470399 TCACAAGATAGTACTGTTTGTATCCTA 57.530 33.333 16.22 3.82 33.23 2.94
3891 4372 4.712476 AGATTGTCCATGCCATCTTACTC 58.288 43.478 0.00 0.00 0.00 2.59
4103 4585 1.300233 GGCGCCGAGATAGGTTCAG 60.300 63.158 12.58 0.00 0.00 3.02
4131 4617 0.040425 GGCAACAACAACGGCAGTAG 60.040 55.000 0.00 0.00 0.00 2.57
4191 4677 4.699735 TGGCAATGACATCGACAAGTAAAT 59.300 37.500 0.00 0.00 0.00 1.40
4214 4700 9.561069 AAATACACTACTGTCTCAAATGTTCTT 57.439 29.630 0.00 0.00 0.00 2.52
4428 4914 3.120792 CTGAGAAAAAGAACGACCGTGA 58.879 45.455 0.00 0.00 0.00 4.35
4462 4948 4.039092 GCCTTGCTGCCCTGGAGA 62.039 66.667 0.00 0.00 0.00 3.71
4530 5016 4.260139 TGACGCCAGTACAAGTTGAATA 57.740 40.909 10.54 0.00 0.00 1.75
4580 5066 2.693267 AAGTACGGAATTCTGAGGCC 57.307 50.000 21.21 0.00 0.00 5.19
4685 5176 0.449786 CGGCGTGTATGCAAAATCCA 59.550 50.000 0.00 0.00 36.28 3.41
4875 5368 7.163001 AGAAAAGGAGAGTTCATAAAATGGC 57.837 36.000 0.00 0.00 0.00 4.40
4913 5406 2.954318 GGCTGATGTATCATGTTGCCTT 59.046 45.455 12.87 0.00 39.77 4.35
5150 5645 6.152661 TCTCCTTGATGTTCAGTTTTGTGTTT 59.847 34.615 0.00 0.00 0.00 2.83
5166 5662 2.814336 GTGTTTTGTTGTTTGCCCCAAA 59.186 40.909 0.00 0.00 0.00 3.28
5176 5672 2.566724 GTTTGCCCCAAATGATCCTTGA 59.433 45.455 6.28 0.00 35.74 3.02
5227 5723 6.173339 TCTGATCCCATAGTGAAGTGAAAAC 58.827 40.000 0.00 0.00 0.00 2.43
5243 5740 0.790814 AAACGACAAGCGAGCTAAGC 59.209 50.000 5.59 5.59 44.57 3.09
5431 5929 2.617308 TGACGTCGCTAAATCCCTCTAG 59.383 50.000 11.62 0.00 0.00 2.43
5475 5973 1.741145 GCGGTAAATGTGGTCGGATTT 59.259 47.619 0.00 0.00 0.00 2.17
5478 5976 4.186159 CGGTAAATGTGGTCGGATTTAGT 58.814 43.478 0.00 0.00 0.00 2.24
5509 6007 1.281867 TCCTCGAGCAACCATTTGGAT 59.718 47.619 6.99 0.00 38.94 3.41
5554 6052 6.183360 GGTGGTGATTGATTTTAGGATCAGTG 60.183 42.308 0.00 0.00 37.35 3.66
5590 6088 1.742411 GCTAGCTTGCGTATGGAACCA 60.742 52.381 7.70 0.00 0.00 3.67
5718 6227 7.881751 CAGGTTCAGTGATGATGATACCATAAT 59.118 37.037 9.90 0.00 33.74 1.28
6020 6559 6.866179 AAGTCTAGTTAGTGAAAATACGCG 57.134 37.500 3.53 3.53 0.00 6.01
6043 6583 6.313411 GCGTAGTACAAACCCATACAAACATA 59.687 38.462 0.38 0.00 0.00 2.29
6130 6675 8.392372 ACACACACATATATCAGTACGAGTAT 57.608 34.615 0.00 0.00 0.00 2.12
6178 6724 2.061773 GATCCGTCATGCCGTATTCAG 58.938 52.381 0.00 0.00 0.00 3.02
6181 6727 1.209128 CGTCATGCCGTATTCAGGAC 58.791 55.000 0.00 0.00 40.58 3.85
6190 6736 4.337555 TGCCGTATTCAGGACTACTCTTAC 59.662 45.833 0.00 0.00 0.00 2.34
6199 6745 5.360144 TCAGGACTACTCTTACATAGTTGCC 59.640 44.000 0.00 0.00 31.69 4.52
6283 6829 8.735692 ATATTATTTGCCCCATTTTGACAAAG 57.264 30.769 0.10 0.00 34.08 2.77
6563 7118 4.692155 GGATTTTCACAAGCTTTCCAATGG 59.308 41.667 0.00 0.00 0.00 3.16
6580 7135 4.112634 CAATGGCATCTCATTTGCTCAAG 58.887 43.478 0.00 0.00 40.03 3.02
6591 7146 4.883585 TCATTTGCTCAAGTCTGACAAACT 59.116 37.500 10.88 0.00 36.40 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.776716 GGATATGGTGATTCATGAAACCCAT 59.223 40.000 26.56 26.56 32.92 4.00
17 18 5.139727 GGATATGGTGATTCATGAAACCCA 58.860 41.667 21.39 20.81 31.30 4.51
18 19 5.139727 TGGATATGGTGATTCATGAAACCC 58.860 41.667 21.39 17.03 31.30 4.11
19 20 6.064060 TCTGGATATGGTGATTCATGAAACC 58.936 40.000 18.66 18.66 0.00 3.27
20 21 6.994496 TCTCTGGATATGGTGATTCATGAAAC 59.006 38.462 13.09 10.68 0.00 2.78
21 22 7.140522 TCTCTGGATATGGTGATTCATGAAA 57.859 36.000 13.09 0.00 0.00 2.69
22 23 6.752285 TCTCTGGATATGGTGATTCATGAA 57.248 37.500 11.26 11.26 0.00 2.57
23 24 6.947376 ATCTCTGGATATGGTGATTCATGA 57.053 37.500 0.00 0.00 0.00 3.07
24 25 7.166167 TGAATCTCTGGATATGGTGATTCATG 58.834 38.462 10.82 0.00 42.34 3.07
25 26 7.325725 TGAATCTCTGGATATGGTGATTCAT 57.674 36.000 10.82 0.00 42.34 2.57
26 27 6.752285 TGAATCTCTGGATATGGTGATTCA 57.248 37.500 10.82 10.82 43.63 2.57
27 28 6.534436 CGATGAATCTCTGGATATGGTGATTC 59.466 42.308 0.00 0.00 40.16 2.52
28 29 6.212187 TCGATGAATCTCTGGATATGGTGATT 59.788 38.462 0.00 0.00 0.00 2.57
29 30 5.718607 TCGATGAATCTCTGGATATGGTGAT 59.281 40.000 0.00 0.00 0.00 3.06
30 31 5.047731 GTCGATGAATCTCTGGATATGGTGA 60.048 44.000 0.00 0.00 0.00 4.02
31 32 5.167121 GTCGATGAATCTCTGGATATGGTG 58.833 45.833 0.00 0.00 0.00 4.17
32 33 4.835056 TGTCGATGAATCTCTGGATATGGT 59.165 41.667 0.00 0.00 0.00 3.55
33 34 5.397142 TGTCGATGAATCTCTGGATATGG 57.603 43.478 0.00 0.00 0.00 2.74
34 35 6.696583 GCTATGTCGATGAATCTCTGGATATG 59.303 42.308 0.00 0.00 0.00 1.78
35 36 6.606796 AGCTATGTCGATGAATCTCTGGATAT 59.393 38.462 0.00 0.00 0.00 1.63
36 37 5.948758 AGCTATGTCGATGAATCTCTGGATA 59.051 40.000 0.00 0.00 0.00 2.59
37 38 4.771577 AGCTATGTCGATGAATCTCTGGAT 59.228 41.667 0.00 0.00 0.00 3.41
38 39 4.148079 AGCTATGTCGATGAATCTCTGGA 58.852 43.478 0.00 0.00 0.00 3.86
39 40 4.517952 AGCTATGTCGATGAATCTCTGG 57.482 45.455 0.00 0.00 0.00 3.86
40 41 5.288015 ACAAGCTATGTCGATGAATCTCTG 58.712 41.667 0.00 0.00 37.96 3.35
41 42 5.528043 ACAAGCTATGTCGATGAATCTCT 57.472 39.130 0.00 0.00 37.96 3.10
42 43 5.557893 GCAACAAGCTATGTCGATGAATCTC 60.558 44.000 0.00 0.00 42.99 2.75
43 44 4.272018 GCAACAAGCTATGTCGATGAATCT 59.728 41.667 0.00 0.00 42.99 2.40
44 45 4.521943 GCAACAAGCTATGTCGATGAATC 58.478 43.478 0.00 0.00 42.99 2.52
45 46 3.313526 GGCAACAAGCTATGTCGATGAAT 59.686 43.478 0.00 0.00 42.99 2.57
46 47 2.677836 GGCAACAAGCTATGTCGATGAA 59.322 45.455 0.00 0.00 42.99 2.57
47 48 2.279741 GGCAACAAGCTATGTCGATGA 58.720 47.619 0.00 0.00 42.99 2.92
48 49 2.744787 GGCAACAAGCTATGTCGATG 57.255 50.000 0.00 0.00 42.99 3.84
62 63 1.737793 CACGGAAGATTACCTGGCAAC 59.262 52.381 0.00 0.00 0.00 4.17
63 64 1.349688 ACACGGAAGATTACCTGGCAA 59.650 47.619 0.00 0.00 0.00 4.52
64 65 0.981183 ACACGGAAGATTACCTGGCA 59.019 50.000 0.00 0.00 0.00 4.92
65 66 1.338769 ACACACGGAAGATTACCTGGC 60.339 52.381 0.00 0.00 0.00 4.85
66 67 2.028476 TCACACACGGAAGATTACCTGG 60.028 50.000 0.00 0.00 0.00 4.45
67 68 3.313012 TCACACACGGAAGATTACCTG 57.687 47.619 0.00 0.00 0.00 4.00
68 69 4.315803 CTTTCACACACGGAAGATTACCT 58.684 43.478 0.00 0.00 0.00 3.08
69 70 3.435671 CCTTTCACACACGGAAGATTACC 59.564 47.826 0.00 0.00 0.00 2.85
70 71 3.120304 GCCTTTCACACACGGAAGATTAC 60.120 47.826 0.00 0.00 0.00 1.89
71 72 3.071479 GCCTTTCACACACGGAAGATTA 58.929 45.455 0.00 0.00 0.00 1.75
72 73 1.880027 GCCTTTCACACACGGAAGATT 59.120 47.619 0.00 0.00 0.00 2.40
73 74 1.202758 TGCCTTTCACACACGGAAGAT 60.203 47.619 0.00 0.00 0.00 2.40
74 75 0.179234 TGCCTTTCACACACGGAAGA 59.821 50.000 0.00 0.00 0.00 2.87
75 76 1.197721 GATGCCTTTCACACACGGAAG 59.802 52.381 0.00 0.00 0.00 3.46
76 77 1.234821 GATGCCTTTCACACACGGAA 58.765 50.000 0.00 0.00 0.00 4.30
77 78 0.107643 TGATGCCTTTCACACACGGA 59.892 50.000 0.00 0.00 0.00 4.69
78 79 0.950836 TTGATGCCTTTCACACACGG 59.049 50.000 0.00 0.00 0.00 4.94
79 80 1.664016 GCTTGATGCCTTTCACACACG 60.664 52.381 0.00 0.00 35.15 4.49
80 81 1.610522 AGCTTGATGCCTTTCACACAC 59.389 47.619 0.00 0.00 44.23 3.82
81 82 1.985473 AGCTTGATGCCTTTCACACA 58.015 45.000 0.00 0.00 44.23 3.72
82 83 2.352127 GGAAGCTTGATGCCTTTCACAC 60.352 50.000 2.10 0.00 44.23 3.82
83 84 1.888512 GGAAGCTTGATGCCTTTCACA 59.111 47.619 2.10 0.00 44.23 3.58
84 85 1.888512 TGGAAGCTTGATGCCTTTCAC 59.111 47.619 2.10 0.00 44.23 3.18
85 86 2.291209 TGGAAGCTTGATGCCTTTCA 57.709 45.000 2.10 0.00 44.23 2.69
86 87 2.737679 GCATGGAAGCTTGATGCCTTTC 60.738 50.000 21.80 1.54 44.23 2.62
87 88 1.206371 GCATGGAAGCTTGATGCCTTT 59.794 47.619 21.80 1.81 44.23 3.11
88 89 0.822164 GCATGGAAGCTTGATGCCTT 59.178 50.000 21.80 6.62 44.23 4.35
89 90 1.381928 CGCATGGAAGCTTGATGCCT 61.382 55.000 24.46 2.59 44.23 4.75
90 91 1.065273 CGCATGGAAGCTTGATGCC 59.935 57.895 24.46 12.97 44.23 4.40
91 92 0.666913 ATCGCATGGAAGCTTGATGC 59.333 50.000 22.21 22.21 39.31 3.91
92 93 2.401017 CATCGCATGGAAGCTTGATG 57.599 50.000 2.10 7.21 0.00 3.07
103 104 2.159212 TGAAAAAGCCATCCATCGCATG 60.159 45.455 0.00 0.00 0.00 4.06
104 105 2.101783 TGAAAAAGCCATCCATCGCAT 58.898 42.857 0.00 0.00 0.00 4.73
105 106 1.543607 TGAAAAAGCCATCCATCGCA 58.456 45.000 0.00 0.00 0.00 5.10
106 107 2.652941 TTGAAAAAGCCATCCATCGC 57.347 45.000 0.00 0.00 0.00 4.58
107 108 4.168760 GAGTTTGAAAAAGCCATCCATCG 58.831 43.478 0.00 0.00 0.00 3.84
108 109 4.082787 TCGAGTTTGAAAAAGCCATCCATC 60.083 41.667 0.00 0.00 0.00 3.51
109 110 3.826157 TCGAGTTTGAAAAAGCCATCCAT 59.174 39.130 0.00 0.00 0.00 3.41
110 111 3.004315 GTCGAGTTTGAAAAAGCCATCCA 59.996 43.478 0.00 0.00 0.00 3.41
111 112 3.004315 TGTCGAGTTTGAAAAAGCCATCC 59.996 43.478 0.00 0.00 0.00 3.51
112 113 4.223320 TGTCGAGTTTGAAAAAGCCATC 57.777 40.909 0.00 0.00 0.00 3.51
113 114 4.549458 CATGTCGAGTTTGAAAAAGCCAT 58.451 39.130 0.00 0.00 0.00 4.40
114 115 3.795150 GCATGTCGAGTTTGAAAAAGCCA 60.795 43.478 0.00 0.00 0.00 4.75
115 116 2.726241 GCATGTCGAGTTTGAAAAAGCC 59.274 45.455 0.00 0.00 0.00 4.35
116 117 2.401720 CGCATGTCGAGTTTGAAAAAGC 59.598 45.455 3.85 0.00 41.67 3.51
117 118 2.973224 CCGCATGTCGAGTTTGAAAAAG 59.027 45.455 10.48 0.00 41.67 2.27
118 119 2.856720 GCCGCATGTCGAGTTTGAAAAA 60.857 45.455 10.48 0.00 41.67 1.94
119 120 1.334599 GCCGCATGTCGAGTTTGAAAA 60.335 47.619 10.48 0.00 41.67 2.29
120 121 0.237235 GCCGCATGTCGAGTTTGAAA 59.763 50.000 10.48 0.00 41.67 2.69
121 122 1.866237 GCCGCATGTCGAGTTTGAA 59.134 52.632 10.48 0.00 41.67 2.69
122 123 2.379634 CGCCGCATGTCGAGTTTGA 61.380 57.895 10.48 0.00 41.67 2.69
123 124 1.695893 ATCGCCGCATGTCGAGTTTG 61.696 55.000 10.48 0.00 41.67 2.93
124 125 1.447838 ATCGCCGCATGTCGAGTTT 60.448 52.632 10.48 0.00 41.67 2.66
125 126 2.167219 CATCGCCGCATGTCGAGTT 61.167 57.895 10.48 0.00 41.67 3.01
126 127 2.583319 CATCGCCGCATGTCGAGT 60.583 61.111 10.48 0.00 41.67 4.18
127 128 2.583319 ACATCGCCGCATGTCGAG 60.583 61.111 10.48 5.29 41.67 4.04
128 129 2.885164 CACATCGCCGCATGTCGA 60.885 61.111 10.48 9.57 41.67 4.20
129 130 3.928769 CCACATCGCCGCATGTCG 61.929 66.667 0.00 0.00 34.60 4.35
130 131 2.309764 GAACCACATCGCCGCATGTC 62.310 60.000 0.00 0.00 34.60 3.06
131 132 2.359850 AACCACATCGCCGCATGT 60.360 55.556 0.00 3.48 37.49 3.21
132 133 1.717791 ATGAACCACATCGCCGCATG 61.718 55.000 0.00 0.00 33.46 4.06
133 134 1.451927 ATGAACCACATCGCCGCAT 60.452 52.632 0.00 0.00 33.46 4.73
134 135 2.046411 ATGAACCACATCGCCGCA 60.046 55.556 0.00 0.00 33.46 5.69
135 136 2.404789 CATGAACCACATCGCCGC 59.595 61.111 0.00 0.00 37.07 6.53
136 137 2.404789 GCATGAACCACATCGCCG 59.595 61.111 0.00 0.00 37.07 6.46
137 138 1.594194 TTGGCATGAACCACATCGCC 61.594 55.000 0.00 0.00 44.94 5.54
138 139 0.456653 GTTGGCATGAACCACATCGC 60.457 55.000 0.00 0.00 40.19 4.58
139 140 0.880441 TGTTGGCATGAACCACATCG 59.120 50.000 0.00 0.00 40.19 3.84
140 141 2.035704 TGTTGTTGGCATGAACCACATC 59.964 45.455 0.00 0.00 40.19 3.06
141 142 2.037901 TGTTGTTGGCATGAACCACAT 58.962 42.857 0.00 0.00 40.19 3.21
142 143 1.478631 TGTTGTTGGCATGAACCACA 58.521 45.000 0.00 0.00 40.19 4.17
143 144 2.593346 TTGTTGTTGGCATGAACCAC 57.407 45.000 0.00 0.00 40.19 4.16
144 145 3.834489 ATTTGTTGTTGGCATGAACCA 57.166 38.095 0.00 0.00 38.16 3.67
145 146 4.093261 GCATATTTGTTGTTGGCATGAACC 59.907 41.667 0.00 0.00 0.00 3.62
146 147 4.689812 TGCATATTTGTTGTTGGCATGAAC 59.310 37.500 0.00 0.00 0.00 3.18
147 148 4.689812 GTGCATATTTGTTGTTGGCATGAA 59.310 37.500 0.00 0.00 31.92 2.57
148 149 4.244066 GTGCATATTTGTTGTTGGCATGA 58.756 39.130 0.00 0.00 31.92 3.07
149 150 3.995048 TGTGCATATTTGTTGTTGGCATG 59.005 39.130 0.00 0.00 31.92 4.06
150 151 4.268797 TGTGCATATTTGTTGTTGGCAT 57.731 36.364 0.00 0.00 31.92 4.40
151 152 3.740631 TGTGCATATTTGTTGTTGGCA 57.259 38.095 0.00 0.00 0.00 4.92
152 153 4.057432 AGTTGTGCATATTTGTTGTTGGC 58.943 39.130 0.00 0.00 0.00 4.52
153 154 5.752472 TCAAGTTGTGCATATTTGTTGTTGG 59.248 36.000 2.11 0.00 0.00 3.77
154 155 6.825284 TCAAGTTGTGCATATTTGTTGTTG 57.175 33.333 2.11 0.00 0.00 3.33
155 156 7.096106 CGAATCAAGTTGTGCATATTTGTTGTT 60.096 33.333 2.11 0.00 0.00 2.83
156 157 6.363088 CGAATCAAGTTGTGCATATTTGTTGT 59.637 34.615 2.11 0.00 0.00 3.32
157 158 6.363088 ACGAATCAAGTTGTGCATATTTGTTG 59.637 34.615 2.11 0.00 0.00 3.33
158 159 6.446318 ACGAATCAAGTTGTGCATATTTGTT 58.554 32.000 2.11 0.00 0.00 2.83
159 160 6.012658 ACGAATCAAGTTGTGCATATTTGT 57.987 33.333 2.11 2.45 0.00 2.83
160 161 8.525876 CAATACGAATCAAGTTGTGCATATTTG 58.474 33.333 2.11 1.85 0.00 2.32
161 162 8.458052 TCAATACGAATCAAGTTGTGCATATTT 58.542 29.630 2.11 0.00 0.00 1.40
162 163 7.984391 TCAATACGAATCAAGTTGTGCATATT 58.016 30.769 2.11 0.00 0.00 1.28
163 164 7.552458 TCAATACGAATCAAGTTGTGCATAT 57.448 32.000 2.11 0.00 0.00 1.78
164 165 6.976636 TCAATACGAATCAAGTTGTGCATA 57.023 33.333 2.11 0.00 0.00 3.14
165 166 5.878332 TCAATACGAATCAAGTTGTGCAT 57.122 34.783 2.11 0.00 0.00 3.96
166 167 5.878332 ATCAATACGAATCAAGTTGTGCA 57.122 34.783 2.11 0.00 0.00 4.57
167 168 7.855545 AGATATCAATACGAATCAAGTTGTGC 58.144 34.615 5.32 0.00 0.00 4.57
175 176 8.454894 GCTCAGTCTAGATATCAATACGAATCA 58.545 37.037 5.32 0.00 0.00 2.57
176 177 7.913297 GGCTCAGTCTAGATATCAATACGAATC 59.087 40.741 5.32 0.00 0.00 2.52
177 178 7.394641 TGGCTCAGTCTAGATATCAATACGAAT 59.605 37.037 5.32 0.00 0.00 3.34
178 179 6.715264 TGGCTCAGTCTAGATATCAATACGAA 59.285 38.462 5.32 0.00 0.00 3.85
179 180 6.238648 TGGCTCAGTCTAGATATCAATACGA 58.761 40.000 5.32 1.93 0.00 3.43
180 181 6.502136 TGGCTCAGTCTAGATATCAATACG 57.498 41.667 5.32 0.00 0.00 3.06
181 182 7.835822 ACATGGCTCAGTCTAGATATCAATAC 58.164 38.462 5.32 0.00 0.00 1.89
182 183 9.706529 ATACATGGCTCAGTCTAGATATCAATA 57.293 33.333 5.32 0.00 0.00 1.90
183 184 6.931790 ACATGGCTCAGTCTAGATATCAAT 57.068 37.500 5.32 0.00 0.00 2.57
184 185 7.123397 GGATACATGGCTCAGTCTAGATATCAA 59.877 40.741 5.32 0.00 0.00 2.57
185 186 6.605194 GGATACATGGCTCAGTCTAGATATCA 59.395 42.308 5.32 0.00 0.00 2.15
186 187 6.833416 AGGATACATGGCTCAGTCTAGATATC 59.167 42.308 0.00 0.00 41.41 1.63
187 188 6.606796 CAGGATACATGGCTCAGTCTAGATAT 59.393 42.308 0.00 0.00 41.41 1.63
188 189 5.948758 CAGGATACATGGCTCAGTCTAGATA 59.051 44.000 0.00 0.00 41.41 1.98
189 190 4.771577 CAGGATACATGGCTCAGTCTAGAT 59.228 45.833 0.00 0.00 41.41 1.98
190 191 4.148079 CAGGATACATGGCTCAGTCTAGA 58.852 47.826 0.00 0.00 41.41 2.43
191 192 3.305950 GCAGGATACATGGCTCAGTCTAG 60.306 52.174 0.00 0.00 41.41 2.43
192 193 2.630098 GCAGGATACATGGCTCAGTCTA 59.370 50.000 0.00 0.00 41.41 2.59
193 194 1.415659 GCAGGATACATGGCTCAGTCT 59.584 52.381 0.00 0.00 41.41 3.24
194 195 1.415659 AGCAGGATACATGGCTCAGTC 59.584 52.381 0.00 0.00 36.19 3.51
195 196 1.140452 CAGCAGGATACATGGCTCAGT 59.860 52.381 0.00 0.00 38.44 3.41
196 197 1.880271 CAGCAGGATACATGGCTCAG 58.120 55.000 0.00 0.00 38.44 3.35
197 198 0.179037 GCAGCAGGATACATGGCTCA 60.179 55.000 0.00 0.00 38.44 4.26
198 199 0.108207 AGCAGCAGGATACATGGCTC 59.892 55.000 0.00 0.00 38.44 4.70
199 200 0.179026 CAGCAGCAGGATACATGGCT 60.179 55.000 0.00 0.00 40.67 4.75
200 201 0.465097 ACAGCAGCAGGATACATGGC 60.465 55.000 0.00 0.00 41.41 4.40
201 202 2.763933 CTACAGCAGCAGGATACATGG 58.236 52.381 0.00 0.00 41.41 3.66
215 216 0.037232 AAAGAGGGTCGTGCTACAGC 60.037 55.000 0.00 0.00 42.50 4.40
216 217 2.069273 CAAAAGAGGGTCGTGCTACAG 58.931 52.381 0.00 0.00 0.00 2.74
217 218 1.414919 ACAAAAGAGGGTCGTGCTACA 59.585 47.619 0.00 0.00 0.00 2.74
218 219 2.165319 ACAAAAGAGGGTCGTGCTAC 57.835 50.000 0.00 0.00 0.00 3.58
219 220 2.489971 CAACAAAAGAGGGTCGTGCTA 58.510 47.619 0.00 0.00 0.00 3.49
220 221 1.308998 CAACAAAAGAGGGTCGTGCT 58.691 50.000 0.00 0.00 0.00 4.40
221 222 0.310854 CCAACAAAAGAGGGTCGTGC 59.689 55.000 0.00 0.00 0.00 5.34
222 223 1.961793 TCCAACAAAAGAGGGTCGTG 58.038 50.000 0.00 0.00 0.00 4.35
223 224 2.951229 ATCCAACAAAAGAGGGTCGT 57.049 45.000 0.00 0.00 0.00 4.34
224 225 6.542370 ACATAATATCCAACAAAAGAGGGTCG 59.458 38.462 0.00 0.00 0.00 4.79
225 226 7.881775 ACATAATATCCAACAAAAGAGGGTC 57.118 36.000 0.00 0.00 0.00 4.46
226 227 9.936329 AATACATAATATCCAACAAAAGAGGGT 57.064 29.630 0.00 0.00 0.00 4.34
244 245 9.672086 GTGCTTCAAACTAACAACAATACATAA 57.328 29.630 0.00 0.00 0.00 1.90
245 246 9.062524 AGTGCTTCAAACTAACAACAATACATA 57.937 29.630 0.00 0.00 0.00 2.29
246 247 7.940850 AGTGCTTCAAACTAACAACAATACAT 58.059 30.769 0.00 0.00 0.00 2.29
247 248 7.328277 AGTGCTTCAAACTAACAACAATACA 57.672 32.000 0.00 0.00 0.00 2.29
248 249 6.856426 GGAGTGCTTCAAACTAACAACAATAC 59.144 38.462 0.00 0.00 0.00 1.89
249 250 6.770785 AGGAGTGCTTCAAACTAACAACAATA 59.229 34.615 0.00 0.00 0.00 1.90
250 251 5.594317 AGGAGTGCTTCAAACTAACAACAAT 59.406 36.000 0.00 0.00 0.00 2.71
251 252 4.947388 AGGAGTGCTTCAAACTAACAACAA 59.053 37.500 0.00 0.00 0.00 2.83
252 253 4.523083 AGGAGTGCTTCAAACTAACAACA 58.477 39.130 0.00 0.00 0.00 3.33
253 254 4.816925 AGAGGAGTGCTTCAAACTAACAAC 59.183 41.667 0.00 0.00 0.00 3.32
254 255 5.036117 AGAGGAGTGCTTCAAACTAACAA 57.964 39.130 0.00 0.00 0.00 2.83
255 256 4.689612 AGAGGAGTGCTTCAAACTAACA 57.310 40.909 0.00 0.00 0.00 2.41
256 257 5.785243 ACTAGAGGAGTGCTTCAAACTAAC 58.215 41.667 0.00 0.00 36.87 2.34
257 258 6.420913 AACTAGAGGAGTGCTTCAAACTAA 57.579 37.500 0.00 0.00 38.87 2.24
258 259 6.041637 TCAAACTAGAGGAGTGCTTCAAACTA 59.958 38.462 0.00 0.00 38.87 2.24
259 260 4.965200 AACTAGAGGAGTGCTTCAAACT 57.035 40.909 0.00 0.00 38.87 2.66
260 261 5.057149 TCAAACTAGAGGAGTGCTTCAAAC 58.943 41.667 0.00 0.00 38.87 2.93
261 262 5.290493 TCAAACTAGAGGAGTGCTTCAAA 57.710 39.130 0.00 0.00 38.87 2.69
262 263 4.955811 TCAAACTAGAGGAGTGCTTCAA 57.044 40.909 0.00 0.00 38.87 2.69
263 264 4.262635 CCTTCAAACTAGAGGAGTGCTTCA 60.263 45.833 0.00 0.00 38.87 3.02
264 265 4.021016 TCCTTCAAACTAGAGGAGTGCTTC 60.021 45.833 0.00 0.00 38.87 3.86
265 266 3.904339 TCCTTCAAACTAGAGGAGTGCTT 59.096 43.478 0.00 0.00 38.87 3.91
266 267 3.511477 TCCTTCAAACTAGAGGAGTGCT 58.489 45.455 0.00 0.00 38.87 4.40
267 268 3.963428 TCCTTCAAACTAGAGGAGTGC 57.037 47.619 0.00 0.00 38.87 4.40
268 269 7.595819 ATCTATCCTTCAAACTAGAGGAGTG 57.404 40.000 0.00 0.00 38.87 3.51
269 270 7.726738 GGTATCTATCCTTCAAACTAGAGGAGT 59.273 40.741 0.00 0.00 41.56 3.85
270 271 7.947890 AGGTATCTATCCTTCAAACTAGAGGAG 59.052 40.741 0.00 0.00 31.64 3.69
271 272 7.827787 AGGTATCTATCCTTCAAACTAGAGGA 58.172 38.462 0.00 0.00 30.18 3.71
272 273 8.485578 AAGGTATCTATCCTTCAAACTAGAGG 57.514 38.462 0.00 0.00 40.80 3.69
273 274 9.974980 GAAAGGTATCTATCCTTCAAACTAGAG 57.025 37.037 0.00 0.00 43.50 2.43
274 275 9.716556 AGAAAGGTATCTATCCTTCAAACTAGA 57.283 33.333 0.00 0.00 43.50 2.43
275 276 9.757227 CAGAAAGGTATCTATCCTTCAAACTAG 57.243 37.037 0.00 0.00 43.50 2.57
276 277 9.488762 TCAGAAAGGTATCTATCCTTCAAACTA 57.511 33.333 0.00 0.00 43.50 2.24
277 278 8.380742 TCAGAAAGGTATCTATCCTTCAAACT 57.619 34.615 0.00 0.00 43.50 2.66
278 279 8.478877 TCTCAGAAAGGTATCTATCCTTCAAAC 58.521 37.037 0.00 0.00 43.50 2.93
279 280 8.609617 TCTCAGAAAGGTATCTATCCTTCAAA 57.390 34.615 0.00 0.00 43.50 2.69
280 281 8.789767 ATCTCAGAAAGGTATCTATCCTTCAA 57.210 34.615 0.00 0.00 43.50 2.69
281 282 8.007153 TGATCTCAGAAAGGTATCTATCCTTCA 58.993 37.037 0.00 0.00 43.50 3.02
282 283 8.415950 TGATCTCAGAAAGGTATCTATCCTTC 57.584 38.462 0.00 0.00 43.50 3.46
283 284 8.789767 TTGATCTCAGAAAGGTATCTATCCTT 57.210 34.615 0.00 0.00 45.84 3.36
284 285 8.010105 ACTTGATCTCAGAAAGGTATCTATCCT 58.990 37.037 0.00 0.00 36.81 3.24
285 286 8.087750 CACTTGATCTCAGAAAGGTATCTATCC 58.912 40.741 0.00 0.00 0.00 2.59
286 287 7.598493 GCACTTGATCTCAGAAAGGTATCTATC 59.402 40.741 0.00 0.00 0.00 2.08
287 288 7.070447 TGCACTTGATCTCAGAAAGGTATCTAT 59.930 37.037 0.00 0.00 0.00 1.98
288 289 6.381133 TGCACTTGATCTCAGAAAGGTATCTA 59.619 38.462 0.00 0.00 0.00 1.98
289 290 5.188555 TGCACTTGATCTCAGAAAGGTATCT 59.811 40.000 0.00 0.00 0.00 1.98
290 291 5.423015 TGCACTTGATCTCAGAAAGGTATC 58.577 41.667 0.00 0.00 0.00 2.24
291 292 5.426689 TGCACTTGATCTCAGAAAGGTAT 57.573 39.130 0.00 0.00 0.00 2.73
292 293 4.890158 TGCACTTGATCTCAGAAAGGTA 57.110 40.909 0.00 0.00 0.00 3.08
293 294 3.777106 TGCACTTGATCTCAGAAAGGT 57.223 42.857 0.00 0.00 0.00 3.50
294 295 3.626670 GGATGCACTTGATCTCAGAAAGG 59.373 47.826 0.00 0.00 0.00 3.11
295 296 4.515361 AGGATGCACTTGATCTCAGAAAG 58.485 43.478 0.00 0.00 0.00 2.62
296 297 4.564782 AGGATGCACTTGATCTCAGAAA 57.435 40.909 0.00 0.00 0.00 2.52
297 298 5.188555 AGTTAGGATGCACTTGATCTCAGAA 59.811 40.000 0.00 0.00 0.00 3.02
298 299 4.713814 AGTTAGGATGCACTTGATCTCAGA 59.286 41.667 0.00 0.00 0.00 3.27
299 300 5.021033 AGTTAGGATGCACTTGATCTCAG 57.979 43.478 0.00 0.00 0.00 3.35
300 301 4.467438 TGAGTTAGGATGCACTTGATCTCA 59.533 41.667 0.00 0.00 0.00 3.27
301 302 4.808364 GTGAGTTAGGATGCACTTGATCTC 59.192 45.833 0.00 0.00 0.00 2.75
302 303 4.383552 GGTGAGTTAGGATGCACTTGATCT 60.384 45.833 0.00 0.00 0.00 2.75
303 304 3.873952 GGTGAGTTAGGATGCACTTGATC 59.126 47.826 0.00 0.00 0.00 2.92
304 305 3.521126 AGGTGAGTTAGGATGCACTTGAT 59.479 43.478 0.00 0.00 0.00 2.57
305 306 2.906389 AGGTGAGTTAGGATGCACTTGA 59.094 45.455 0.00 0.00 0.00 3.02
306 307 3.005554 CAGGTGAGTTAGGATGCACTTG 58.994 50.000 0.00 0.00 33.19 3.16
307 308 2.616510 GCAGGTGAGTTAGGATGCACTT 60.617 50.000 0.00 0.00 33.92 3.16
308 309 1.065854 GCAGGTGAGTTAGGATGCACT 60.066 52.381 0.00 0.00 33.92 4.40
309 310 1.373570 GCAGGTGAGTTAGGATGCAC 58.626 55.000 0.00 0.00 33.92 4.57
310 311 0.108186 CGCAGGTGAGTTAGGATGCA 60.108 55.000 0.00 0.00 33.33 3.96
311 312 0.108138 ACGCAGGTGAGTTAGGATGC 60.108 55.000 0.00 0.00 0.00 3.91
312 313 2.223829 CCTACGCAGGTGAGTTAGGATG 60.224 54.545 0.00 0.00 37.15 3.51
313 314 2.032620 CCTACGCAGGTGAGTTAGGAT 58.967 52.381 0.00 0.00 37.15 3.24
314 315 1.005097 TCCTACGCAGGTGAGTTAGGA 59.995 52.381 0.53 0.00 43.18 2.94
315 316 1.471119 TCCTACGCAGGTGAGTTAGG 58.529 55.000 0.53 0.00 43.18 2.69
316 317 2.427453 ACATCCTACGCAGGTGAGTTAG 59.573 50.000 0.53 0.00 43.18 2.34
317 318 2.453521 ACATCCTACGCAGGTGAGTTA 58.546 47.619 0.53 0.00 43.18 2.24
318 319 1.267121 ACATCCTACGCAGGTGAGTT 58.733 50.000 0.53 0.00 43.18 3.01
319 320 1.749634 GTACATCCTACGCAGGTGAGT 59.250 52.381 0.53 1.97 43.18 3.41
320 321 2.025155 AGTACATCCTACGCAGGTGAG 58.975 52.381 0.53 0.00 43.18 3.51
321 322 1.749063 CAGTACATCCTACGCAGGTGA 59.251 52.381 0.53 0.00 43.18 4.02
322 323 1.749063 TCAGTACATCCTACGCAGGTG 59.251 52.381 0.53 2.36 43.18 4.00
323 324 2.139323 TCAGTACATCCTACGCAGGT 57.861 50.000 0.53 0.00 43.18 4.00
324 325 4.848562 TTATCAGTACATCCTACGCAGG 57.151 45.455 0.00 0.00 44.17 4.85
325 326 8.244113 TCATTATTATCAGTACATCCTACGCAG 58.756 37.037 0.00 0.00 0.00 5.18
326 327 8.117813 TCATTATTATCAGTACATCCTACGCA 57.882 34.615 0.00 0.00 0.00 5.24
327 328 9.025020 CATCATTATTATCAGTACATCCTACGC 57.975 37.037 0.00 0.00 0.00 4.42
328 329 9.521503 CCATCATTATTATCAGTACATCCTACG 57.478 37.037 0.00 0.00 0.00 3.51
331 332 9.552695 TCTCCATCATTATTATCAGTACATCCT 57.447 33.333 0.00 0.00 0.00 3.24
334 335 9.610705 GCATCTCCATCATTATTATCAGTACAT 57.389 33.333 0.00 0.00 0.00 2.29
335 336 8.819845 AGCATCTCCATCATTATTATCAGTACA 58.180 33.333 0.00 0.00 0.00 2.90
336 337 9.096160 CAGCATCTCCATCATTATTATCAGTAC 57.904 37.037 0.00 0.00 0.00 2.73
337 338 8.819845 ACAGCATCTCCATCATTATTATCAGTA 58.180 33.333 0.00 0.00 0.00 2.74
338 339 7.606839 CACAGCATCTCCATCATTATTATCAGT 59.393 37.037 0.00 0.00 0.00 3.41
339 340 7.414208 GCACAGCATCTCCATCATTATTATCAG 60.414 40.741 0.00 0.00 0.00 2.90
340 341 6.373495 GCACAGCATCTCCATCATTATTATCA 59.627 38.462 0.00 0.00 0.00 2.15
341 342 6.373495 TGCACAGCATCTCCATCATTATTATC 59.627 38.462 0.00 0.00 31.71 1.75
342 343 6.243148 TGCACAGCATCTCCATCATTATTAT 58.757 36.000 0.00 0.00 31.71 1.28
343 344 5.623169 TGCACAGCATCTCCATCATTATTA 58.377 37.500 0.00 0.00 31.71 0.98
344 345 4.466827 TGCACAGCATCTCCATCATTATT 58.533 39.130 0.00 0.00 31.71 1.40
345 346 4.072839 CTGCACAGCATCTCCATCATTAT 58.927 43.478 0.00 0.00 38.13 1.28
346 347 3.135167 TCTGCACAGCATCTCCATCATTA 59.865 43.478 0.00 0.00 38.13 1.90
347 348 2.092592 TCTGCACAGCATCTCCATCATT 60.093 45.455 0.00 0.00 38.13 2.57
348 349 1.489230 TCTGCACAGCATCTCCATCAT 59.511 47.619 0.00 0.00 38.13 2.45
349 350 0.906775 TCTGCACAGCATCTCCATCA 59.093 50.000 0.00 0.00 38.13 3.07
350 351 1.941294 CTTCTGCACAGCATCTCCATC 59.059 52.381 0.00 0.00 38.13 3.51
351 352 1.281287 ACTTCTGCACAGCATCTCCAT 59.719 47.619 0.00 0.00 38.13 3.41
352 353 0.689055 ACTTCTGCACAGCATCTCCA 59.311 50.000 0.00 0.00 38.13 3.86
353 354 1.338484 TGACTTCTGCACAGCATCTCC 60.338 52.381 0.00 0.00 38.13 3.71
354 355 2.090400 TGACTTCTGCACAGCATCTC 57.910 50.000 0.00 0.00 38.13 2.75
355 356 2.783609 ATGACTTCTGCACAGCATCT 57.216 45.000 0.00 0.00 38.13 2.90
356 357 3.063180 GTGTATGACTTCTGCACAGCATC 59.937 47.826 0.00 0.00 38.13 3.91
357 358 3.005554 GTGTATGACTTCTGCACAGCAT 58.994 45.455 0.00 0.00 38.13 3.79
358 359 2.224257 TGTGTATGACTTCTGCACAGCA 60.224 45.455 0.00 0.00 35.48 4.41
359 360 2.158449 GTGTGTATGACTTCTGCACAGC 59.842 50.000 0.00 0.00 40.17 4.40
360 361 3.185188 GTGTGTGTATGACTTCTGCACAG 59.815 47.826 0.00 0.00 40.17 3.66
361 362 3.130633 GTGTGTGTATGACTTCTGCACA 58.869 45.455 0.00 0.00 37.68 4.57
362 363 3.059597 GTGTGTGTGTATGACTTCTGCAC 60.060 47.826 0.00 0.00 0.00 4.57
363 364 3.130633 GTGTGTGTGTATGACTTCTGCA 58.869 45.455 0.00 0.00 0.00 4.41
364 365 3.130633 TGTGTGTGTGTATGACTTCTGC 58.869 45.455 0.00 0.00 0.00 4.26
365 366 8.877808 ATATATGTGTGTGTGTATGACTTCTG 57.122 34.615 0.00 0.00 0.00 3.02
394 395 9.727859 CTAGTAACAGAATAGCTCAGTCCTATA 57.272 37.037 0.00 0.00 0.00 1.31
395 396 8.221944 ACTAGTAACAGAATAGCTCAGTCCTAT 58.778 37.037 0.00 0.00 0.00 2.57
396 397 7.575505 ACTAGTAACAGAATAGCTCAGTCCTA 58.424 38.462 0.00 0.00 0.00 2.94
397 398 6.428295 ACTAGTAACAGAATAGCTCAGTCCT 58.572 40.000 0.00 0.00 0.00 3.85
398 399 6.702716 ACTAGTAACAGAATAGCTCAGTCC 57.297 41.667 0.00 0.00 0.00 3.85
425 426 9.309224 GGGCTGAGGGTAACAAAATAATATTAT 57.691 33.333 1.91 1.91 39.74 1.28
426 427 8.507761 AGGGCTGAGGGTAACAAAATAATATTA 58.492 33.333 0.00 0.00 39.74 0.98
427 428 7.287696 CAGGGCTGAGGGTAACAAAATAATATT 59.712 37.037 0.00 0.00 39.74 1.28
428 429 6.777580 CAGGGCTGAGGGTAACAAAATAATAT 59.222 38.462 0.00 0.00 39.74 1.28
429 430 6.126409 CAGGGCTGAGGGTAACAAAATAATA 58.874 40.000 0.00 0.00 39.74 0.98
430 431 4.956075 CAGGGCTGAGGGTAACAAAATAAT 59.044 41.667 0.00 0.00 39.74 1.28
431 432 4.202631 ACAGGGCTGAGGGTAACAAAATAA 60.203 41.667 0.00 0.00 39.74 1.40
432 433 3.332485 ACAGGGCTGAGGGTAACAAAATA 59.668 43.478 0.00 0.00 39.74 1.40
433 434 2.110011 ACAGGGCTGAGGGTAACAAAAT 59.890 45.455 0.00 0.00 39.74 1.82
434 435 1.497286 ACAGGGCTGAGGGTAACAAAA 59.503 47.619 0.00 0.00 39.74 2.44
435 436 1.145571 ACAGGGCTGAGGGTAACAAA 58.854 50.000 0.00 0.00 39.74 2.83
436 437 2.032965 TACAGGGCTGAGGGTAACAA 57.967 50.000 0.00 0.00 39.74 2.83
437 438 1.906574 CTTACAGGGCTGAGGGTAACA 59.093 52.381 0.00 0.00 39.74 2.41
438 439 1.209747 CCTTACAGGGCTGAGGGTAAC 59.790 57.143 0.00 0.00 0.00 2.50
439 440 1.580059 CCTTACAGGGCTGAGGGTAA 58.420 55.000 0.00 0.00 0.00 2.85
440 441 3.317280 CCTTACAGGGCTGAGGGTA 57.683 57.895 0.00 0.00 0.00 3.69
441 442 4.153957 CCTTACAGGGCTGAGGGT 57.846 61.111 0.00 0.00 0.00 4.34
450 451 1.338136 ACAGATCGGCCCCTTACAGG 61.338 60.000 0.00 0.00 34.30 4.00
451 452 1.341531 CTACAGATCGGCCCCTTACAG 59.658 57.143 0.00 0.00 0.00 2.74
452 453 1.342674 ACTACAGATCGGCCCCTTACA 60.343 52.381 0.00 0.00 0.00 2.41
453 454 1.411041 ACTACAGATCGGCCCCTTAC 58.589 55.000 0.00 0.00 0.00 2.34
454 455 3.428532 GATACTACAGATCGGCCCCTTA 58.571 50.000 0.00 0.00 0.00 2.69
455 456 2.249139 GATACTACAGATCGGCCCCTT 58.751 52.381 0.00 0.00 0.00 3.95
456 457 1.550409 GGATACTACAGATCGGCCCCT 60.550 57.143 0.00 0.00 0.00 4.79
457 458 0.896226 GGATACTACAGATCGGCCCC 59.104 60.000 0.00 0.00 0.00 5.80
458 459 0.526662 CGGATACTACAGATCGGCCC 59.473 60.000 0.00 0.00 0.00 5.80
459 460 1.531423 TCGGATACTACAGATCGGCC 58.469 55.000 0.00 0.00 0.00 6.13
460 461 2.351544 GGTTCGGATACTACAGATCGGC 60.352 54.545 0.00 0.00 0.00 5.54
461 462 2.095869 CGGTTCGGATACTACAGATCGG 60.096 54.545 0.00 0.00 0.00 4.18
462 463 3.184649 CGGTTCGGATACTACAGATCG 57.815 52.381 0.00 0.00 0.00 3.69
501 502 1.488812 GGTGGGCTGGGTTTTCTTTTT 59.511 47.619 0.00 0.00 0.00 1.94
502 503 1.128200 GGTGGGCTGGGTTTTCTTTT 58.872 50.000 0.00 0.00 0.00 2.27
503 504 0.762842 GGGTGGGCTGGGTTTTCTTT 60.763 55.000 0.00 0.00 0.00 2.52
504 505 1.152333 GGGTGGGCTGGGTTTTCTT 60.152 57.895 0.00 0.00 0.00 2.52
505 506 2.399607 TGGGTGGGCTGGGTTTTCT 61.400 57.895 0.00 0.00 0.00 2.52
506 507 2.200092 TGGGTGGGCTGGGTTTTC 59.800 61.111 0.00 0.00 0.00 2.29
507 508 2.123033 GTGGGTGGGCTGGGTTTT 60.123 61.111 0.00 0.00 0.00 2.43
508 509 3.110031 AGTGGGTGGGCTGGGTTT 61.110 61.111 0.00 0.00 0.00 3.27
509 510 3.580319 GAGTGGGTGGGCTGGGTT 61.580 66.667 0.00 0.00 0.00 4.11
516 517 4.489771 GATGCGGGAGTGGGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
517 518 4.489771 GGATGCGGGAGTGGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
518 519 4.489771 GGGATGCGGGAGTGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
521 522 3.704231 CTTGGGGATGCGGGAGTGG 62.704 68.421 0.00 0.00 0.00 4.00
522 523 2.124570 CTTGGGGATGCGGGAGTG 60.125 66.667 0.00 0.00 0.00 3.51
523 524 2.610859 ACTTGGGGATGCGGGAGT 60.611 61.111 0.00 0.00 0.00 3.85
524 525 2.190578 GACTTGGGGATGCGGGAG 59.809 66.667 0.00 0.00 0.00 4.30
525 526 3.407967 GGACTTGGGGATGCGGGA 61.408 66.667 0.00 0.00 0.00 5.14
526 527 3.727258 TGGACTTGGGGATGCGGG 61.727 66.667 0.00 0.00 0.00 6.13
527 528 2.438434 GTGGACTTGGGGATGCGG 60.438 66.667 0.00 0.00 0.00 5.69
528 529 2.438434 GGTGGACTTGGGGATGCG 60.438 66.667 0.00 0.00 0.00 4.73
529 530 0.681243 GAAGGTGGACTTGGGGATGC 60.681 60.000 0.00 0.00 40.21 3.91
530 531 0.995024 AGAAGGTGGACTTGGGGATG 59.005 55.000 0.00 0.00 40.21 3.51
531 532 1.636003 GAAGAAGGTGGACTTGGGGAT 59.364 52.381 0.00 0.00 40.21 3.85
532 533 1.064825 GAAGAAGGTGGACTTGGGGA 58.935 55.000 0.00 0.00 40.21 4.81
533 534 0.038310 GGAAGAAGGTGGACTTGGGG 59.962 60.000 0.00 0.00 40.21 4.96
534 535 0.038310 GGGAAGAAGGTGGACTTGGG 59.962 60.000 0.00 0.00 40.21 4.12
535 536 0.038310 GGGGAAGAAGGTGGACTTGG 59.962 60.000 0.00 0.00 40.21 3.61
536 537 0.321653 CGGGGAAGAAGGTGGACTTG 60.322 60.000 0.00 0.00 40.21 3.16
537 538 0.767060 ACGGGGAAGAAGGTGGACTT 60.767 55.000 0.00 0.00 43.65 3.01
538 539 1.152096 ACGGGGAAGAAGGTGGACT 60.152 57.895 0.00 0.00 0.00 3.85
539 540 1.192803 AGACGGGGAAGAAGGTGGAC 61.193 60.000 0.00 0.00 0.00 4.02
540 541 0.903454 GAGACGGGGAAGAAGGTGGA 60.903 60.000 0.00 0.00 0.00 4.02
541 542 1.597461 GAGACGGGGAAGAAGGTGG 59.403 63.158 0.00 0.00 0.00 4.61
542 543 1.215647 CGAGACGGGGAAGAAGGTG 59.784 63.158 0.00 0.00 0.00 4.00
543 544 0.324460 ATCGAGACGGGGAAGAAGGT 60.324 55.000 0.00 0.00 0.00 3.50
544 545 0.386113 GATCGAGACGGGGAAGAAGG 59.614 60.000 0.00 0.00 0.00 3.46
545 546 0.386113 GGATCGAGACGGGGAAGAAG 59.614 60.000 0.00 0.00 0.00 2.85
546 547 1.041447 GGGATCGAGACGGGGAAGAA 61.041 60.000 0.00 0.00 0.00 2.52
547 548 1.455217 GGGATCGAGACGGGGAAGA 60.455 63.158 0.00 0.00 0.00 2.87
548 549 2.846652 CGGGATCGAGACGGGGAAG 61.847 68.421 0.00 0.00 39.00 3.46
549 550 2.831742 CGGGATCGAGACGGGGAA 60.832 66.667 0.00 0.00 39.00 3.97
550 551 4.889112 CCGGGATCGAGACGGGGA 62.889 72.222 15.09 0.00 43.69 4.81
554 555 4.609247 GTCGCCGGGATCGAGACG 62.609 72.222 2.18 0.00 39.00 4.18
555 556 3.515286 TGTCGCCGGGATCGAGAC 61.515 66.667 2.18 0.00 40.97 3.36
556 557 3.515286 GTGTCGCCGGGATCGAGA 61.515 66.667 2.18 0.00 39.00 4.04
557 558 4.570663 GGTGTCGCCGGGATCGAG 62.571 72.222 2.18 0.00 39.00 4.04
571 572 4.410400 GAAGGTGGGAGCGGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
572 573 4.658786 AGAAGGTGGGAGCGGGGT 62.659 66.667 0.00 0.00 0.00 4.95
573 574 3.787001 GAGAAGGTGGGAGCGGGG 61.787 72.222 0.00 0.00 0.00 5.73
574 575 3.787001 GGAGAAGGTGGGAGCGGG 61.787 72.222 0.00 0.00 0.00 6.13
575 576 3.787001 GGGAGAAGGTGGGAGCGG 61.787 72.222 0.00 0.00 0.00 5.52
576 577 3.787001 GGGGAGAAGGTGGGAGCG 61.787 72.222 0.00 0.00 0.00 5.03
577 578 3.787001 CGGGGAGAAGGTGGGAGC 61.787 72.222 0.00 0.00 0.00 4.70
578 579 3.083997 CCGGGGAGAAGGTGGGAG 61.084 72.222 0.00 0.00 0.00 4.30
581 582 4.101448 CAGCCGGGGAGAAGGTGG 62.101 72.222 2.18 0.00 0.00 4.61
582 583 4.101448 CCAGCCGGGGAGAAGGTG 62.101 72.222 2.18 0.00 0.00 4.00
583 584 3.642741 ATCCAGCCGGGGAGAAGGT 62.643 63.158 2.18 0.00 41.08 3.50
584 585 2.770048 ATCCAGCCGGGGAGAAGG 60.770 66.667 2.18 0.00 41.08 3.46
585 586 2.812619 GGATCCAGCCGGGGAGAAG 61.813 68.421 6.95 0.00 41.08 2.85
586 587 2.768344 GGATCCAGCCGGGGAGAA 60.768 66.667 6.95 0.00 41.08 2.87
587 588 4.880426 GGGATCCAGCCGGGGAGA 62.880 72.222 15.23 0.00 41.08 3.71
612 613 3.330720 AAGAAGGTGGGGGCGAGG 61.331 66.667 0.00 0.00 0.00 4.63
613 614 2.269241 GAAGAAGGTGGGGGCGAG 59.731 66.667 0.00 0.00 0.00 5.03
614 615 3.327404 GGAAGAAGGTGGGGGCGA 61.327 66.667 0.00 0.00 0.00 5.54
615 616 4.426313 GGGAAGAAGGTGGGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
616 617 4.426313 CGGGAAGAAGGTGGGGGC 62.426 72.222 0.00 0.00 0.00 5.80
617 618 3.728373 CCGGGAAGAAGGTGGGGG 61.728 72.222 0.00 0.00 0.00 5.40
618 619 4.426313 GCCGGGAAGAAGGTGGGG 62.426 72.222 2.18 0.00 0.00 4.96
619 620 4.778143 CGCCGGGAAGAAGGTGGG 62.778 72.222 2.18 0.00 34.57 4.61
1019 1020 3.334054 AGAGGTGGAAGCAGGGGC 61.334 66.667 0.00 0.00 41.61 5.80
1203 1210 1.443702 CAGTGATGGCGTCGAACGA 60.444 57.895 10.82 0.00 46.05 3.85
1240 1247 2.821366 GGAGGACAGCATGCGGTG 60.821 66.667 28.32 16.59 46.34 4.94
1250 1257 1.841556 ACCTTTGCCGAGGAGGACA 60.842 57.895 9.27 0.00 45.00 4.02
1251 1258 1.376037 CACCTTTGCCGAGGAGGAC 60.376 63.158 9.27 0.00 45.00 3.85
1327 1348 4.439289 GCTCTGCACAAGAACAAGAAAACT 60.439 41.667 0.00 0.00 33.37 2.66
1367 1389 3.040206 GCAGATGAGCCTGGCCTCA 62.040 63.158 16.57 17.83 45.16 3.86
1400 1422 1.999735 CTCTTGATTTTGCGGACGCTA 59.000 47.619 18.04 7.55 42.51 4.26
1584 1616 1.457346 CTAGAAAACCCCAGCAGCAG 58.543 55.000 0.00 0.00 0.00 4.24
1642 1904 5.163343 TGCTAATCCTAGAAACCGTAGCAAT 60.163 40.000 0.00 0.00 39.46 3.56
1706 1976 9.483489 TGGAGTACTAATTAGGAAATGTCACTA 57.517 33.333 16.73 0.00 0.00 2.74
1770 2063 7.441458 GGGCACTTTTTATCTATGAATCGTAGT 59.559 37.037 9.12 0.84 0.00 2.73
1800 2094 4.923893 TGCAGTTCACAGACATGAAAAAG 58.076 39.130 0.00 0.00 40.22 2.27
1886 2180 2.498481 CCAGCATGTTCATTCCCATGTT 59.502 45.455 0.00 0.00 40.42 2.71
1958 2252 4.274978 TGTATGTACTCGACTTGGATGGA 58.725 43.478 0.00 0.00 0.00 3.41
2304 2603 4.081752 AGTGGTCTTCTACTGATTGCTGAG 60.082 45.833 0.00 0.00 34.17 3.35
2322 2621 7.607991 CCAAGATTAGACTGTAAATCAAGTGGT 59.392 37.037 14.31 0.00 35.07 4.16
2572 2873 9.832445 AATAAGAAACTTAAACTGAGTGTCTCA 57.168 29.630 0.00 0.00 40.08 3.27
2588 2889 7.510549 TTGTGCTGAGCTAAAATAAGAAACT 57.489 32.000 5.83 0.00 0.00 2.66
2664 3133 6.865205 AGAAAACACTCAATAGAATTGCTTGC 59.135 34.615 0.00 0.00 0.00 4.01
2668 3137 7.862372 TCAACAGAAAACACTCAATAGAATTGC 59.138 33.333 0.00 0.00 0.00 3.56
2691 3160 5.076182 TCTTGTTTCTTGGGCACATATCAA 58.924 37.500 0.00 0.00 0.00 2.57
2698 3167 3.823304 AGAATCTCTTGTTTCTTGGGCAC 59.177 43.478 0.00 0.00 30.49 5.01
2699 3168 4.104383 AGAATCTCTTGTTTCTTGGGCA 57.896 40.909 0.00 0.00 30.49 5.36
2700 3169 6.765915 ATAAGAATCTCTTGTTTCTTGGGC 57.234 37.500 7.89 0.00 40.43 5.36
2701 3170 8.340618 TCAATAAGAATCTCTTGTTTCTTGGG 57.659 34.615 7.89 0.00 40.43 4.12
2702 3171 9.007901 ACTCAATAAGAATCTCTTGTTTCTTGG 57.992 33.333 7.89 0.00 40.43 3.61
2708 3177 8.940952 GCTTGTACTCAATAAGAATCTCTTGTT 58.059 33.333 0.00 0.00 38.15 2.83
2709 3178 8.317679 AGCTTGTACTCAATAAGAATCTCTTGT 58.682 33.333 0.00 0.00 37.29 3.16
2710 3179 8.715191 AGCTTGTACTCAATAAGAATCTCTTG 57.285 34.615 0.00 0.63 37.29 3.02
2711 3180 7.984617 GGAGCTTGTACTCAATAAGAATCTCTT 59.015 37.037 0.00 0.00 38.17 2.85
2712 3181 7.124901 TGGAGCTTGTACTCAATAAGAATCTCT 59.875 37.037 0.00 0.00 38.50 3.10
2713 3182 7.268586 TGGAGCTTGTACTCAATAAGAATCTC 58.731 38.462 0.00 0.00 38.50 2.75
2714 3183 7.187824 TGGAGCTTGTACTCAATAAGAATCT 57.812 36.000 0.00 0.00 38.50 2.40
2715 3184 7.550906 ACTTGGAGCTTGTACTCAATAAGAATC 59.449 37.037 0.00 0.00 38.50 2.52
2716 3185 7.398024 ACTTGGAGCTTGTACTCAATAAGAAT 58.602 34.615 0.00 0.00 38.50 2.40
2717 3186 6.769512 ACTTGGAGCTTGTACTCAATAAGAA 58.230 36.000 0.00 0.00 38.50 2.52
2718 3187 6.360370 ACTTGGAGCTTGTACTCAATAAGA 57.640 37.500 0.00 0.00 38.50 2.10
2719 3188 6.183360 CGAACTTGGAGCTTGTACTCAATAAG 60.183 42.308 0.00 0.00 38.50 1.73
2720 3189 5.637810 CGAACTTGGAGCTTGTACTCAATAA 59.362 40.000 0.00 0.00 38.50 1.40
2721 3190 5.168569 CGAACTTGGAGCTTGTACTCAATA 58.831 41.667 0.00 0.00 38.50 1.90
2722 3191 3.997021 CGAACTTGGAGCTTGTACTCAAT 59.003 43.478 0.00 0.00 38.50 2.57
2723 3192 3.390135 CGAACTTGGAGCTTGTACTCAA 58.610 45.455 0.00 0.00 38.50 3.02
2724 3193 2.866460 GCGAACTTGGAGCTTGTACTCA 60.866 50.000 0.00 0.00 38.50 3.41
2725 3194 1.727335 GCGAACTTGGAGCTTGTACTC 59.273 52.381 0.00 0.00 35.86 2.59
2726 3195 1.070134 TGCGAACTTGGAGCTTGTACT 59.930 47.619 0.00 0.00 0.00 2.73
2727 3196 1.508632 TGCGAACTTGGAGCTTGTAC 58.491 50.000 0.00 0.00 0.00 2.90
2728 3197 2.248280 TTGCGAACTTGGAGCTTGTA 57.752 45.000 0.00 0.00 0.00 2.41
2729 3198 1.388547 TTTGCGAACTTGGAGCTTGT 58.611 45.000 0.00 0.00 0.00 3.16
2730 3199 2.490328 TTTTGCGAACTTGGAGCTTG 57.510 45.000 0.00 0.00 0.00 4.01
2731 3200 6.699575 ATATATTTTGCGAACTTGGAGCTT 57.300 33.333 0.00 0.00 0.00 3.74
2732 3201 7.445402 ACATATATATTTTGCGAACTTGGAGCT 59.555 33.333 0.00 0.00 0.00 4.09
2733 3202 7.584987 ACATATATATTTTGCGAACTTGGAGC 58.415 34.615 0.00 0.00 0.00 4.70
2734 3203 9.385902 CAACATATATATTTTGCGAACTTGGAG 57.614 33.333 8.33 0.00 0.00 3.86
2735 3204 8.898761 ACAACATATATATTTTGCGAACTTGGA 58.101 29.630 17.66 0.00 28.93 3.53
2782 3251 2.038557 GGCAGTCTTTGAACCTCCTACA 59.961 50.000 0.00 0.00 0.00 2.74
2866 3335 0.179181 GAATGAGTGTACGTCGCCGA 60.179 55.000 0.00 0.00 37.88 5.54
2884 3353 1.002624 GAAACCCGGTGGAGCATGA 60.003 57.895 0.00 0.00 34.81 3.07
2886 3355 2.198304 GAGGAAACCCGGTGGAGCAT 62.198 60.000 0.00 0.00 34.81 3.79
2914 3383 1.308216 ATGGGGGAAGGAGGGACAG 60.308 63.158 0.00 0.00 0.00 3.51
2942 3411 0.548031 TGATGGAAGGAGGCATGGAC 59.452 55.000 0.00 0.00 0.00 4.02
2965 3434 2.045536 CACCTCCTGCTCCCTTGC 60.046 66.667 0.00 0.00 0.00 4.01
2966 3435 2.045536 GCACCTCCTGCTCCCTTG 60.046 66.667 0.00 0.00 43.33 3.61
3023 3492 2.962421 GAGTAGGAGAGGTGGAAGATGG 59.038 54.545 0.00 0.00 0.00 3.51
3097 3566 3.998099 TGGTGCGAATTTTGTCATGAA 57.002 38.095 0.00 0.00 0.00 2.57
3535 4010 8.974060 TGAACTGAACTAAACTAAAACTGGAT 57.026 30.769 0.00 0.00 0.00 3.41
3605 4082 4.018960 ACATGGGGAATACATCAGATAGCC 60.019 45.833 0.00 0.00 0.00 3.93
3891 4372 8.608844 AAGTTCTTCACTCATTTACCAACTAG 57.391 34.615 0.00 0.00 32.94 2.57
4065 4547 4.339247 CGCCATATCTGAACCTCCATTTTT 59.661 41.667 0.00 0.00 0.00 1.94
4103 4585 2.217750 GTTGTTGTTGCCCCCATTTTC 58.782 47.619 0.00 0.00 0.00 2.29
4131 4617 1.005340 CTCCAGCTCTTCGATGTTGC 58.995 55.000 9.62 9.62 0.00 4.17
4191 4677 8.635328 TGTAAGAACATTTGAGACAGTAGTGTA 58.365 33.333 2.39 0.00 36.88 2.90
4240 4726 7.789202 TTCATGGGGAATTCAACTAAATTCA 57.211 32.000 7.93 0.00 44.09 2.57
4460 4946 1.674764 CTGGTGGATGAGCTCGCTCT 61.675 60.000 18.63 5.67 43.12 4.09
4462 4948 2.729479 CCTGGTGGATGAGCTCGCT 61.729 63.158 9.64 0.00 34.57 4.93
4493 4979 0.531974 GTCAACGCTCCACTTGGACA 60.532 55.000 0.00 0.00 39.78 4.02
4530 5016 0.108585 AACATGTCAACGCTCCCACT 59.891 50.000 0.00 0.00 0.00 4.00
4875 5368 1.151668 GCCAACAGCAGACAGTACTG 58.848 55.000 21.44 21.44 42.97 2.74
4901 5394 1.288932 AGGGGCTTAAGGCAACATGAT 59.711 47.619 28.08 4.36 44.01 2.45
4930 5423 1.732259 GCACGCACAACAAGTAGCTAT 59.268 47.619 0.00 0.00 0.00 2.97
4961 5454 0.101759 CAGCAACAAACAGCAGCAGT 59.898 50.000 0.00 0.00 0.00 4.40
5110 5605 7.831193 ACATCAAGGAGATAAATAGCAACAGTT 59.169 33.333 0.00 0.00 34.43 3.16
5150 5645 3.495806 GGATCATTTGGGGCAAACAACAA 60.496 43.478 0.00 0.00 36.13 2.83
5176 5672 8.792633 AGTGCACAACATATACAAACATTAACT 58.207 29.630 21.04 0.00 0.00 2.24
5227 5723 0.734253 AGTGCTTAGCTCGCTTGTCG 60.734 55.000 5.60 0.00 40.15 4.35
5243 5740 5.650543 ACTTGCAAACTTTCCAAACTAGTG 58.349 37.500 0.00 0.00 0.00 2.74
5431 5929 2.152016 GAGTAGCCAACCACCTGTTTC 58.848 52.381 0.00 0.00 34.00 2.78
5475 5973 3.997762 CTCGAGGAAGAGCTAGCTACTA 58.002 50.000 19.38 0.22 0.00 1.82
5509 6007 6.603997 ACCACCACAAGAACACAATAAAGTTA 59.396 34.615 0.00 0.00 0.00 2.24
5554 6052 4.508662 AGCTAGCTACCAACATCAACTTC 58.491 43.478 17.69 0.00 0.00 3.01
5590 6088 9.485206 GAATCTAATGCCAATATTGAATTTGCT 57.515 29.630 17.23 6.46 0.00 3.91
5718 6227 9.810545 AATTCTTATTTGTTTTCTTGTCCGAAA 57.189 25.926 0.00 0.00 0.00 3.46
5817 6331 6.628185 TCTGGACTTCTCTTATTTTACGACC 58.372 40.000 0.00 0.00 0.00 4.79
5899 6438 7.254761 GCATGGTTTGTATCATCGAACTGAATA 60.255 37.037 0.00 0.00 33.59 1.75
5992 6531 8.709646 CGTATTTTCACTAACTAGACTTTGCTT 58.290 33.333 0.00 0.00 0.00 3.91
6020 6559 9.223099 ACTTATGTTTGTATGGGTTTGTACTAC 57.777 33.333 0.00 0.00 0.00 2.73
6144 6690 1.270094 ACGGATCGTGCTGTTTTCTCA 60.270 47.619 0.00 0.00 39.18 3.27
6178 6724 5.593679 TGGCAACTATGTAAGAGTAGTCC 57.406 43.478 0.00 0.00 31.10 3.85
6181 6727 7.997482 TCTACTTGGCAACTATGTAAGAGTAG 58.003 38.462 0.00 2.59 37.61 2.57
6190 6736 5.408604 ACGTTTTCTCTACTTGGCAACTATG 59.591 40.000 0.00 0.00 37.61 2.23
6199 6745 7.595502 AGTCATGTTAGACGTTTTCTCTACTTG 59.404 37.037 0.00 0.00 43.24 3.16
6523 7073 6.599244 TGAAAATCCGCATCTTCCATATATCC 59.401 38.462 0.00 0.00 0.00 2.59
6563 7118 3.688185 TCAGACTTGAGCAAATGAGATGC 59.312 43.478 0.00 0.00 44.15 3.91
6580 7135 9.353999 ACTTAATTTTCAAACAGTTTGTCAGAC 57.646 29.630 22.70 0.00 41.36 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.