Multiple sequence alignment - TraesCS2A01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G266500 chr2A 100.000 5783 0 0 1 5783 423755983 423750201 0.000000e+00 10680.0
1 TraesCS2A01G266500 chr2A 79.333 150 16 9 4232 4380 444077854 444077719 2.220000e-14 91.6
2 TraesCS2A01G266500 chr2B 89.318 4353 200 99 18 4230 381233324 381237551 0.000000e+00 5217.0
3 TraesCS2A01G266500 chr2B 95.840 673 16 3 4367 5036 381237559 381238222 0.000000e+00 1077.0
4 TraesCS2A01G266500 chr2B 92.553 376 27 1 5288 5663 381238639 381239013 6.590000e-149 538.0
5 TraesCS2A01G266500 chr2B 82.371 641 70 20 1158 1782 632519722 632519109 8.590000e-143 518.0
6 TraesCS2A01G266500 chr2B 95.187 187 9 0 5041 5227 381238443 381238629 4.380000e-76 296.0
7 TraesCS2A01G266500 chr2B 77.206 408 61 11 744 1136 632520106 632519716 5.870000e-50 209.0
8 TraesCS2A01G266500 chr2B 95.041 121 5 1 5663 5783 201418006 201418125 7.650000e-44 189.0
9 TraesCS2A01G266500 chr2B 83.688 141 12 5 4229 4369 21749585 21749456 7.870000e-24 122.0
10 TraesCS2A01G266500 chr2B 81.757 148 16 5 4222 4369 171995390 171995526 4.740000e-21 113.0
11 TraesCS2A01G266500 chr2B 94.643 56 3 0 4323 4378 425441234 425441179 2.870000e-13 87.9
12 TraesCS2A01G266500 chr2D 89.615 3977 162 108 329 4229 313462406 313466207 0.000000e+00 4824.0
13 TraesCS2A01G266500 chr2D 93.672 964 44 6 4366 5328 313466204 313467151 0.000000e+00 1426.0
14 TraesCS2A01G266500 chr2D 89.198 611 32 15 3640 4229 464802625 464802028 0.000000e+00 732.0
15 TraesCS2A01G266500 chr2D 87.952 332 11 7 18 331 313462040 313462360 1.180000e-96 364.0
16 TraesCS2A01G266500 chr2D 95.000 120 5 1 5664 5783 500166343 500166225 2.750000e-43 187.0
17 TraesCS2A01G266500 chr2D 97.938 97 2 0 4366 4462 464802031 464801935 9.970000e-38 169.0
18 TraesCS2A01G266500 chr7A 82.581 620 67 23 1158 1760 634976717 634977312 5.170000e-140 508.0
19 TraesCS2A01G266500 chr7A 82.692 312 51 2 5333 5642 38755013 38754703 2.050000e-69 274.0
20 TraesCS2A01G266500 chr7A 78.228 395 54 11 745 1124 634976334 634976711 2.100000e-54 224.0
21 TraesCS2A01G266500 chr7A 82.716 162 23 2 2028 2189 634977484 634977640 7.810000e-29 139.0
22 TraesCS2A01G266500 chr7A 81.818 154 15 7 4216 4369 409866064 409866204 3.660000e-22 117.0
23 TraesCS2A01G266500 chr7A 96.296 54 2 0 4323 4376 162590130 162590183 7.980000e-14 89.8
24 TraesCS2A01G266500 chr1A 81.607 647 71 23 1158 1782 572883398 572882778 5.210000e-135 492.0
25 TraesCS2A01G266500 chr1A 78.624 407 55 13 745 1136 572883781 572883392 2.080000e-59 241.0
26 TraesCS2A01G266500 chr1A 95.000 120 6 0 5664 5783 151533106 151532987 7.650000e-44 189.0
27 TraesCS2A01G266500 chr1A 95.041 121 5 1 5664 5783 298206567 298206447 7.650000e-44 189.0
28 TraesCS2A01G266500 chr1A 95.000 120 6 0 5664 5783 298234538 298234419 7.650000e-44 189.0
29 TraesCS2A01G266500 chr1A 84.277 159 20 2 2031 2189 572882623 572882470 3.610000e-32 150.0
30 TraesCS2A01G266500 chr1A 94.118 68 3 1 4229 4295 72678766 72678833 1.030000e-17 102.0
31 TraesCS2A01G266500 chr1A 80.667 150 14 10 4232 4379 213289518 213289382 1.030000e-17 102.0
32 TraesCS2A01G266500 chr1A 88.372 86 6 4 4207 4288 355714053 355714138 3.690000e-17 100.0
33 TraesCS2A01G266500 chr1A 80.000 155 14 12 4232 4384 111151780 111151641 1.330000e-16 99.0
34 TraesCS2A01G266500 chr1A 93.846 65 3 1 4323 4387 23062419 23062482 4.770000e-16 97.1
35 TraesCS2A01G266500 chr6B 82.941 340 55 3 5325 5663 487120051 487120388 2.620000e-78 303.0
36 TraesCS2A01G266500 chr6B 80.795 151 14 9 4232 4380 495807708 495807571 2.850000e-18 104.0
37 TraesCS2A01G266500 chr6B 80.255 157 12 12 4224 4375 141673050 141672908 3.690000e-17 100.0
38 TraesCS2A01G266500 chr3A 95.000 120 6 0 5664 5783 202533054 202532935 7.650000e-44 189.0
39 TraesCS2A01G266500 chr3A 93.548 124 8 0 5660 5783 211906152 211906275 9.900000e-43 185.0
40 TraesCS2A01G266500 chr7D 92.913 127 6 3 5659 5783 168873229 168873354 1.280000e-41 182.0
41 TraesCS2A01G266500 chr7D 85.256 156 18 2 2028 2183 70226608 70226758 7.760000e-34 156.0
42 TraesCS2A01G266500 chr7D 88.889 81 9 0 1898 1978 70226532 70226612 3.690000e-17 100.0
43 TraesCS2A01G266500 chr7D 90.698 43 3 1 5093 5135 210085097 210085056 8.100000e-04 56.5
44 TraesCS2A01G266500 chrUn 80.786 229 40 4 5333 5559 77450976 77450750 5.960000e-40 176.0
45 TraesCS2A01G266500 chr5D 88.652 141 12 4 5644 5783 342791099 342790962 9.970000e-38 169.0
46 TraesCS2A01G266500 chr5B 82.993 147 13 6 4224 4370 82212167 82212301 7.870000e-24 122.0
47 TraesCS2A01G266500 chr4A 82.237 152 13 8 4220 4369 513376021 513375882 1.020000e-22 119.0
48 TraesCS2A01G266500 chr4B 81.081 148 16 6 4222 4369 371599967 371600102 2.200000e-19 108.0
49 TraesCS2A01G266500 chr1B 80.795 151 17 9 4220 4369 669017039 669017178 2.200000e-19 108.0
50 TraesCS2A01G266500 chr1B 80.822 146 17 8 4232 4377 526748584 526748718 2.850000e-18 104.0
51 TraesCS2A01G266500 chr6D 100.000 34 0 0 3075 3108 426525680 426525647 4.840000e-06 63.9
52 TraesCS2A01G266500 chr3B 92.683 41 2 1 5095 5135 812530433 812530394 2.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G266500 chr2A 423750201 423755983 5782 True 10680.000000 10680 100.000000 1 5783 1 chr2A.!!$R1 5782
1 TraesCS2A01G266500 chr2B 381233324 381239013 5689 False 1782.000000 5217 93.224500 18 5663 4 chr2B.!!$F3 5645
2 TraesCS2A01G266500 chr2B 632519109 632520106 997 True 363.500000 518 79.788500 744 1782 2 chr2B.!!$R3 1038
3 TraesCS2A01G266500 chr2D 313462040 313467151 5111 False 2204.666667 4824 90.413000 18 5328 3 chr2D.!!$F1 5310
4 TraesCS2A01G266500 chr2D 464801935 464802625 690 True 450.500000 732 93.568000 3640 4462 2 chr2D.!!$R2 822
5 TraesCS2A01G266500 chr7A 634976334 634977640 1306 False 290.333333 508 81.175000 745 2189 3 chr7A.!!$F3 1444
6 TraesCS2A01G266500 chr1A 572882470 572883781 1311 True 294.333333 492 81.502667 745 2189 3 chr1A.!!$R6 1444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 564 0.035534 ACACACATGCTAATCGGCCA 60.036 50.0 2.24 0.00 0.00 5.36 F
785 901 0.035881 TCACTGCTCCAGCCTTCAAG 59.964 55.0 0.00 0.00 41.18 3.02 F
1905 2087 0.541764 GGGAGGTTGCCACATTGGAA 60.542 55.0 0.00 0.00 40.96 3.53 F
2371 2553 0.836606 TCCACAGTTGGCTTCAGACA 59.163 50.0 0.00 0.00 43.56 3.41 F
2986 3171 0.036952 TACAAGTGAGCTGCTCCTGC 60.037 55.0 25.61 15.72 40.20 4.85 F
3422 3615 0.109597 AATCAAGAAAGCAAGCGCCG 60.110 50.0 2.29 0.00 39.83 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2230 0.035056 CTTGGGCGTTTCCTCCATCT 60.035 55.0 0.00 0.0 34.39 2.90 R
2100 2282 0.950116 GGCAGCTGTAATGGAGCATC 59.050 55.0 16.64 0.0 39.05 3.91 R
2756 2941 0.954449 AGACCACACTCGTCGTCGAT 60.954 55.0 5.00 0.0 45.21 3.59 R
4362 4586 0.036294 GACTGCTGGTTGGTACTCCC 60.036 60.0 0.00 0.0 0.00 4.30 R
4364 4588 0.685097 TGGACTGCTGGTTGGTACTC 59.315 55.0 0.00 0.0 0.00 2.59 R
5417 5875 0.818938 TGTACCGAATCGCCAGCTTA 59.181 50.0 0.00 0.0 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 54 8.792830 TTAGTCCTAAATGTAGTACGTACAGT 57.207 34.615 26.55 10.40 45.06 3.55
48 55 9.884636 TTAGTCCTAAATGTAGTACGTACAGTA 57.115 33.333 26.55 12.55 45.06 2.74
112 119 1.002315 GCTTCATGTGCCCATTGGTTT 59.998 47.619 1.20 0.00 0.00 3.27
218 237 7.792374 TTGGCTTATTAGCAAGACAAGATAG 57.208 36.000 6.00 0.00 46.28 2.08
219 238 6.767902 TTGGCTTATTAGCAAGACAAGATAGG 59.232 38.462 6.00 0.00 46.28 2.57
220 239 7.365563 TTGGCTTATTAGCAAGACAAGATAGGA 60.366 37.037 6.00 0.00 46.28 2.94
221 240 7.650834 GCTTATTAGCAAGACAAGATAGGAG 57.349 40.000 0.00 0.00 46.95 3.69
222 241 7.213678 GCTTATTAGCAAGACAAGATAGGAGT 58.786 38.462 0.00 0.00 46.95 3.85
253 273 8.490311 CCATTAATCTAATCCTAGAATCTCCCC 58.510 40.741 0.00 0.00 37.70 4.81
377 458 5.239744 TCGAGTTAAAAAGGTGCAGCATAAA 59.760 36.000 19.63 2.02 0.00 1.40
379 460 6.586082 CGAGTTAAAAAGGTGCAGCATAAATT 59.414 34.615 19.63 8.00 0.00 1.82
380 461 7.753132 CGAGTTAAAAAGGTGCAGCATAAATTA 59.247 33.333 19.63 7.05 0.00 1.40
381 462 9.418045 GAGTTAAAAAGGTGCAGCATAAATTAA 57.582 29.630 19.63 12.21 0.00 1.40
382 463 9.423061 AGTTAAAAAGGTGCAGCATAAATTAAG 57.577 29.630 19.63 0.00 0.00 1.85
383 464 9.418045 GTTAAAAAGGTGCAGCATAAATTAAGA 57.582 29.630 19.63 0.00 0.00 2.10
384 465 9.988815 TTAAAAAGGTGCAGCATAAATTAAGAA 57.011 25.926 19.63 0.00 0.00 2.52
385 466 8.538409 AAAAAGGTGCAGCATAAATTAAGAAG 57.462 30.769 19.63 0.00 0.00 2.85
422 503 2.325583 AAGAGCCGTCTGTTTTGTGA 57.674 45.000 0.00 0.00 31.37 3.58
423 504 2.550830 AGAGCCGTCTGTTTTGTGAT 57.449 45.000 0.00 0.00 0.00 3.06
424 505 2.417719 AGAGCCGTCTGTTTTGTGATC 58.582 47.619 0.00 0.00 0.00 2.92
425 506 2.037772 AGAGCCGTCTGTTTTGTGATCT 59.962 45.455 0.00 0.00 0.00 2.75
427 508 3.214328 AGCCGTCTGTTTTGTGATCTTT 58.786 40.909 0.00 0.00 0.00 2.52
428 509 4.385825 AGCCGTCTGTTTTGTGATCTTTA 58.614 39.130 0.00 0.00 0.00 1.85
474 563 1.094785 AACACACATGCTAATCGGCC 58.905 50.000 0.00 0.00 0.00 6.13
475 564 0.035534 ACACACATGCTAATCGGCCA 60.036 50.000 2.24 0.00 0.00 5.36
494 583 2.545532 CCAATGGTGATGTTGTTGCGTT 60.546 45.455 0.00 0.00 0.00 4.84
502 591 4.381566 GTGATGTTGTTGCGTTTGGATAAC 59.618 41.667 0.00 0.00 0.00 1.89
508 597 0.322997 TGCGTTTGGATAACTGGGGG 60.323 55.000 0.00 0.00 0.00 5.40
509 598 0.323087 GCGTTTGGATAACTGGGGGT 60.323 55.000 0.00 0.00 0.00 4.95
518 607 0.111639 TAACTGGGGGTGGTTTCTGC 59.888 55.000 0.00 0.00 0.00 4.26
535 624 1.342496 CTGCTCTGCGGATAATGAGGA 59.658 52.381 0.00 0.00 37.02 3.71
617 711 6.270463 TCCACTACCAATAGTTACTTTGACCA 59.730 38.462 0.00 0.00 39.80 4.02
668 762 1.597742 GGTGGCTATGTATGTGCAGG 58.402 55.000 0.00 0.00 0.00 4.85
669 763 1.597742 GTGGCTATGTATGTGCAGGG 58.402 55.000 0.00 0.00 0.00 4.45
670 764 0.179020 TGGCTATGTATGTGCAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
671 765 0.179020 GGCTATGTATGTGCAGGGCA 60.179 55.000 0.00 0.00 35.60 5.36
751 866 0.182061 TGCATCATTGGCCTCTCTCC 59.818 55.000 3.32 0.00 0.00 3.71
785 901 0.035881 TCACTGCTCCAGCCTTCAAG 59.964 55.000 0.00 0.00 41.18 3.02
812 928 1.897225 CTCCCACCTCTGCTCCACTG 61.897 65.000 0.00 0.00 0.00 3.66
813 929 2.046507 CCACCTCTGCTCCACTGC 60.047 66.667 0.00 0.00 0.00 4.40
814 930 2.046507 CACCTCTGCTCCACTGCC 60.047 66.667 0.00 0.00 0.00 4.85
816 932 3.324930 CCTCTGCTCCACTGCCCA 61.325 66.667 0.00 0.00 0.00 5.36
817 933 2.752358 CTCTGCTCCACTGCCCAA 59.248 61.111 0.00 0.00 0.00 4.12
823 941 2.074967 CTCCACTGCCCAACCCTTA 58.925 57.895 0.00 0.00 0.00 2.69
862 980 2.095059 CCACCAGCTAAATTGTGTGAGC 60.095 50.000 0.00 0.00 35.07 4.26
916 1034 2.289882 TGCATTTCTCTCTCCCTGTGTG 60.290 50.000 0.00 0.00 0.00 3.82
926 1044 2.563798 CCCTGTGTGTTGGCGCAAT 61.564 57.895 10.83 0.00 36.82 3.56
973 1114 5.657474 CCATGGTTTCCATCTTCTGATTTG 58.343 41.667 2.57 0.00 43.15 2.32
974 1115 5.394883 CCATGGTTTCCATCTTCTGATTTGG 60.395 44.000 2.57 0.00 43.15 3.28
977 1118 5.010922 TGGTTTCCATCTTCTGATTTGGTTG 59.989 40.000 0.00 0.00 0.00 3.77
978 1119 5.473039 GTTTCCATCTTCTGATTTGGTTGG 58.527 41.667 0.00 0.00 0.00 3.77
983 1124 5.010922 CCATCTTCTGATTTGGTTGGTTTCA 59.989 40.000 0.00 0.00 0.00 2.69
984 1125 6.462768 CCATCTTCTGATTTGGTTGGTTTCAA 60.463 38.462 0.00 0.00 0.00 2.69
986 1127 5.890985 TCTTCTGATTTGGTTGGTTTCAAGA 59.109 36.000 0.00 0.00 32.92 3.02
987 1128 5.514274 TCTGATTTGGTTGGTTTCAAGAC 57.486 39.130 0.00 0.00 32.92 3.01
988 1129 4.952957 TCTGATTTGGTTGGTTTCAAGACA 59.047 37.500 0.00 0.00 32.92 3.41
990 1131 4.709397 TGATTTGGTTGGTTTCAAGACAGT 59.291 37.500 0.00 0.00 32.92 3.55
993 1134 4.448537 TGGTTGGTTTCAAGACAGTTTG 57.551 40.909 0.00 0.00 32.92 2.93
994 1135 3.829601 TGGTTGGTTTCAAGACAGTTTGT 59.170 39.130 0.00 0.00 32.92 2.83
995 1136 4.173256 GGTTGGTTTCAAGACAGTTTGTG 58.827 43.478 0.00 0.00 32.92 3.33
996 1137 4.173256 GTTGGTTTCAAGACAGTTTGTGG 58.827 43.478 0.00 0.00 32.92 4.17
1030 1171 1.774254 TGGAGGCACTGGAGAAGAAAA 59.226 47.619 0.00 0.00 41.55 2.29
1038 1179 1.538950 CTGGAGAAGAAAAGCCACAGC 59.461 52.381 0.00 0.00 40.32 4.40
1249 1392 4.335400 TTTGGAGGAGAAAAATGCCAAC 57.665 40.909 0.00 0.00 35.35 3.77
1341 1493 1.202687 TGCTCCATATAGTGCCACTGC 60.203 52.381 7.83 0.51 38.26 4.40
1393 1552 3.334583 TGTGGTGTCTTCTAGAATGGC 57.665 47.619 5.44 2.82 0.00 4.40
1465 1624 1.032794 AGACTGACACGCAAGACTCA 58.967 50.000 0.00 0.00 43.62 3.41
1485 1644 2.818432 CACTCAGAAAAGAGGCAAGCAT 59.182 45.455 0.00 0.00 39.97 3.79
1489 1661 3.693085 TCAGAAAAGAGGCAAGCATCATC 59.307 43.478 9.50 4.60 0.00 2.92
1491 1663 4.158025 CAGAAAAGAGGCAAGCATCATCTT 59.842 41.667 9.50 2.93 0.00 2.40
1580 1752 2.301346 ACATTTTCATCTCCGGATGCC 58.699 47.619 3.57 0.00 46.41 4.40
1629 1801 2.859526 TGAGATGACGATGCTCTGAC 57.140 50.000 0.00 0.00 0.00 3.51
1726 1898 2.183811 CCTGCTCCGCTCACTCTG 59.816 66.667 0.00 0.00 0.00 3.35
1812 1987 9.426837 CATTTTAACACCATCTGTTCATTCATT 57.573 29.630 0.00 0.00 42.49 2.57
1905 2087 0.541764 GGGAGGTTGCCACATTGGAA 60.542 55.000 0.00 0.00 40.96 3.53
2048 2230 4.724602 GAGCTCACGGTCTGCGCA 62.725 66.667 10.98 10.98 32.56 6.09
2100 2282 2.892425 GGAAGAGGTGGCGATGCG 60.892 66.667 0.00 0.00 0.00 4.73
2354 2536 5.187576 TGACCCATCTGAATTTTCCAATTCC 59.812 40.000 5.45 0.00 45.53 3.01
2365 2547 2.380064 TCCAATTCCACAGTTGGCTT 57.620 45.000 0.00 0.00 43.58 4.35
2366 2548 2.238521 TCCAATTCCACAGTTGGCTTC 58.761 47.619 0.00 0.00 43.58 3.86
2367 2549 1.962807 CCAATTCCACAGTTGGCTTCA 59.037 47.619 0.00 0.00 43.56 3.02
2368 2550 2.029649 CCAATTCCACAGTTGGCTTCAG 60.030 50.000 0.00 0.00 43.56 3.02
2369 2551 2.886523 CAATTCCACAGTTGGCTTCAGA 59.113 45.455 0.00 0.00 43.56 3.27
2370 2552 1.967319 TTCCACAGTTGGCTTCAGAC 58.033 50.000 0.00 0.00 43.56 3.51
2371 2553 0.836606 TCCACAGTTGGCTTCAGACA 59.163 50.000 0.00 0.00 43.56 3.41
2377 2559 2.945008 CAGTTGGCTTCAGACAGTTTCA 59.055 45.455 0.00 0.00 32.66 2.69
2383 2565 3.565482 GGCTTCAGACAGTTTCATGTTGA 59.435 43.478 0.00 0.00 32.25 3.18
2385 2567 5.210715 GCTTCAGACAGTTTCATGTTGAAG 58.789 41.667 17.65 17.65 42.83 3.02
2394 2576 5.967674 CAGTTTCATGTTGAAGTTCAGACAC 59.032 40.000 17.44 10.02 37.70 3.67
2642 2827 1.271597 GCTGACCACATCCCTGAAACT 60.272 52.381 0.00 0.00 0.00 2.66
2645 2830 1.351017 GACCACATCCCTGAAACTCCA 59.649 52.381 0.00 0.00 0.00 3.86
2717 2902 0.904865 TCGCAGATCCACCTCTGGTT 60.905 55.000 3.51 0.00 42.42 3.67
2897 3082 1.112950 TCAGTGGACCGTACAACACA 58.887 50.000 8.35 0.00 36.35 3.72
2977 3162 2.878406 TGCTCCAAACTTACAAGTGAGC 59.122 45.455 18.78 18.78 45.44 4.26
2978 3163 3.142174 GCTCCAAACTTACAAGTGAGCT 58.858 45.455 18.52 0.00 43.58 4.09
2979 3164 3.058639 GCTCCAAACTTACAAGTGAGCTG 60.059 47.826 18.52 6.35 43.58 4.24
2980 3165 2.878406 TCCAAACTTACAAGTGAGCTGC 59.122 45.455 0.00 0.00 39.66 5.25
2981 3166 2.880890 CCAAACTTACAAGTGAGCTGCT 59.119 45.455 0.00 0.00 39.66 4.24
2982 3167 3.058639 CCAAACTTACAAGTGAGCTGCTC 60.059 47.826 22.38 22.38 39.66 4.26
2983 3168 2.464157 ACTTACAAGTGAGCTGCTCC 57.536 50.000 25.61 16.80 37.98 4.70
2984 3169 1.974236 ACTTACAAGTGAGCTGCTCCT 59.026 47.619 25.61 18.63 37.98 3.69
2985 3170 2.289320 ACTTACAAGTGAGCTGCTCCTG 60.289 50.000 25.61 20.69 37.98 3.86
2986 3171 0.036952 TACAAGTGAGCTGCTCCTGC 60.037 55.000 25.61 15.72 40.20 4.85
3001 3186 5.636837 TGCTCCTGCATTTTATTTTCGTAC 58.363 37.500 0.00 0.00 45.31 3.67
3007 3192 6.093495 CCTGCATTTTATTTTCGTACTCTCCA 59.907 38.462 0.00 0.00 0.00 3.86
3008 3193 7.361713 CCTGCATTTTATTTTCGTACTCTCCAA 60.362 37.037 0.00 0.00 0.00 3.53
3009 3194 7.877003 TGCATTTTATTTTCGTACTCTCCAAA 58.123 30.769 0.00 0.00 0.00 3.28
3010 3195 7.806014 TGCATTTTATTTTCGTACTCTCCAAAC 59.194 33.333 0.00 0.00 0.00 2.93
3011 3196 7.007099 GCATTTTATTTTCGTACTCTCCAAACG 59.993 37.037 0.00 0.00 37.96 3.60
3012 3197 7.481275 TTTTATTTTCGTACTCTCCAAACGT 57.519 32.000 0.00 0.00 37.83 3.99
3013 3198 7.481275 TTTATTTTCGTACTCTCCAAACGTT 57.519 32.000 0.00 0.00 37.83 3.99
3014 3199 5.587033 ATTTTCGTACTCTCCAAACGTTC 57.413 39.130 0.00 0.00 37.83 3.95
3015 3200 3.996150 TTCGTACTCTCCAAACGTTCT 57.004 42.857 0.00 0.00 37.83 3.01
3016 3201 3.996150 TCGTACTCTCCAAACGTTCTT 57.004 42.857 0.00 0.00 37.83 2.52
3017 3202 3.635331 TCGTACTCTCCAAACGTTCTTG 58.365 45.455 0.00 0.00 37.83 3.02
3018 3203 3.067180 TCGTACTCTCCAAACGTTCTTGT 59.933 43.478 0.00 0.00 37.83 3.16
3019 3204 3.424529 CGTACTCTCCAAACGTTCTTGTC 59.575 47.826 0.00 0.00 32.16 3.18
3020 3205 2.835027 ACTCTCCAAACGTTCTTGTCC 58.165 47.619 0.00 0.00 0.00 4.02
3021 3206 2.169769 ACTCTCCAAACGTTCTTGTCCA 59.830 45.455 0.00 0.00 0.00 4.02
3022 3207 3.202906 CTCTCCAAACGTTCTTGTCCAA 58.797 45.455 0.00 0.00 0.00 3.53
3023 3208 3.611970 TCTCCAAACGTTCTTGTCCAAA 58.388 40.909 0.00 0.00 0.00 3.28
3024 3209 4.204012 TCTCCAAACGTTCTTGTCCAAAT 58.796 39.130 0.00 0.00 0.00 2.32
3025 3210 5.369833 TCTCCAAACGTTCTTGTCCAAATA 58.630 37.500 0.00 0.00 0.00 1.40
3026 3211 5.468746 TCTCCAAACGTTCTTGTCCAAATAG 59.531 40.000 0.00 0.00 0.00 1.73
3027 3212 4.517453 TCCAAACGTTCTTGTCCAAATAGG 59.483 41.667 0.00 0.00 39.47 2.57
3028 3213 4.320935 CCAAACGTTCTTGTCCAAATAGGG 60.321 45.833 0.00 0.00 38.24 3.53
3033 3218 5.183140 ACGTTCTTGTCCAAATAGGGAAATG 59.817 40.000 0.00 0.00 39.05 2.32
3036 3221 7.535997 GTTCTTGTCCAAATAGGGAAATGTAC 58.464 38.462 0.00 0.00 39.05 2.90
3054 3243 9.872757 GAAATGTACGAAAATTCTTGTGTTCTA 57.127 29.630 0.00 0.00 0.00 2.10
3247 3436 2.045536 GCTTGCTCCCTGGTCCAG 60.046 66.667 12.40 12.40 0.00 3.86
3248 3437 2.900106 GCTTGCTCCCTGGTCCAGT 61.900 63.158 17.85 0.00 0.00 4.00
3250 3439 2.190488 CTTGCTCCCTGGTCCAGTCC 62.190 65.000 17.85 3.62 0.00 3.85
3251 3440 2.607750 GCTCCCTGGTCCAGTCCA 60.608 66.667 17.85 0.08 36.00 4.02
3265 3454 5.241949 GGTCCAGTCCATACTACTCACATAG 59.758 48.000 0.00 0.00 33.48 2.23
3422 3615 0.109597 AATCAAGAAAGCAAGCGCCG 60.110 50.000 2.29 0.00 39.83 6.46
3471 3664 4.380531 TGTGACACTGACAGAGGAAATTC 58.619 43.478 10.08 0.00 0.00 2.17
3473 3666 3.244561 TGACACTGACAGAGGAAATTCCC 60.245 47.826 10.08 0.31 37.19 3.97
3477 3670 4.829492 CACTGACAGAGGAAATTCCCTTTT 59.171 41.667 10.08 0.00 37.19 2.27
3478 3671 4.829492 ACTGACAGAGGAAATTCCCTTTTG 59.171 41.667 10.08 4.94 37.19 2.44
3479 3672 3.573967 TGACAGAGGAAATTCCCTTTTGC 59.426 43.478 8.66 0.00 37.19 3.68
3486 3683 1.200760 AATTCCCTTTTGCCCAGGCC 61.201 55.000 6.14 0.00 41.09 5.19
3564 3761 2.475371 GATGCAGCACCCACTGTCCT 62.475 60.000 0.00 0.00 39.96 3.85
3607 3804 4.430137 CCATGTATGGCTATGTTGCATC 57.570 45.455 0.00 0.00 41.75 3.91
3635 3832 0.541296 AAGAAGGCATGGTGCTGCTT 60.541 50.000 0.00 0.00 44.28 3.91
3686 3883 2.818130 TTTGGTCAAGAAAGCATGGC 57.182 45.000 0.00 0.00 0.00 4.40
3728 3925 9.237187 TGTTCCTGCAATACTTGATTAAATGTA 57.763 29.630 0.00 0.00 0.00 2.29
3750 3948 8.628630 TGTATGGACAAATTCTGATTGTAACA 57.371 30.769 0.00 1.46 40.90 2.41
3854 4052 1.754234 GCCTTTGCCATCCATCGGT 60.754 57.895 0.00 0.00 0.00 4.69
3865 4063 2.725008 CATCGGTCCGAGCCTCTC 59.275 66.667 20.50 0.00 39.91 3.20
3920 4118 2.736144 TCCCGCGGTATGATATGAAC 57.264 50.000 26.12 0.00 0.00 3.18
3921 4119 2.244695 TCCCGCGGTATGATATGAACT 58.755 47.619 26.12 0.00 0.00 3.01
3943 4156 1.332375 CTCTAGACTCTAGCACGCACC 59.668 57.143 8.10 0.00 0.00 5.01
3948 4161 0.679505 ACTCTAGCACGCACCAGAAA 59.320 50.000 0.00 0.00 0.00 2.52
4014 4238 3.876274 AGCATCGAGACATAACACTGT 57.124 42.857 0.00 0.00 0.00 3.55
4130 4354 4.094887 AGTGATAAAGCTAAATGCACCACG 59.905 41.667 0.00 0.00 45.94 4.94
4139 4363 2.977456 TGCACCACGGCATGACAC 60.977 61.111 0.00 0.00 39.25 3.67
4140 4364 2.977456 GCACCACGGCATGACACA 60.977 61.111 0.00 0.00 0.00 3.72
4225 4449 4.335037 GCATCTTTTCTTTTGTTGGCCAAA 59.665 37.500 22.47 8.06 41.25 3.28
4226 4450 5.504501 GCATCTTTTCTTTTGTTGGCCAAAG 60.505 40.000 22.47 14.43 43.63 2.77
4227 4451 5.159273 TCTTTTCTTTTGTTGGCCAAAGT 57.841 34.783 22.47 0.00 43.63 2.66
4228 4452 6.287589 TCTTTTCTTTTGTTGGCCAAAGTA 57.712 33.333 22.47 7.02 43.63 2.24
4229 4453 6.702329 TCTTTTCTTTTGTTGGCCAAAGTAA 58.298 32.000 22.47 13.17 43.63 2.24
4230 4454 7.162082 TCTTTTCTTTTGTTGGCCAAAGTAAA 58.838 30.769 22.47 18.25 43.63 2.01
4231 4455 7.826744 TCTTTTCTTTTGTTGGCCAAAGTAAAT 59.173 29.630 22.47 0.00 43.63 1.40
4232 4456 9.103861 CTTTTCTTTTGTTGGCCAAAGTAAATA 57.896 29.630 22.47 10.41 43.63 1.40
4233 4457 8.426881 TTTCTTTTGTTGGCCAAAGTAAATAC 57.573 30.769 22.47 6.34 43.63 1.89
4234 4458 7.354751 TCTTTTGTTGGCCAAAGTAAATACT 57.645 32.000 22.47 0.00 43.63 2.12
4235 4459 7.430441 TCTTTTGTTGGCCAAAGTAAATACTC 58.570 34.615 22.47 3.91 43.63 2.59
4236 4460 5.715434 TTGTTGGCCAAAGTAAATACTCC 57.285 39.130 22.47 3.33 34.99 3.85
4237 4461 4.083565 TGTTGGCCAAAGTAAATACTCCC 58.916 43.478 22.47 3.10 34.99 4.30
4238 4462 4.202631 TGTTGGCCAAAGTAAATACTCCCT 60.203 41.667 22.47 0.00 34.99 4.20
4239 4463 4.230745 TGGCCAAAGTAAATACTCCCTC 57.769 45.455 0.61 0.00 34.99 4.30
4240 4464 3.053917 TGGCCAAAGTAAATACTCCCTCC 60.054 47.826 0.61 0.00 34.99 4.30
4241 4465 3.203716 GCCAAAGTAAATACTCCCTCCG 58.796 50.000 0.00 0.00 34.99 4.63
4242 4466 3.370209 GCCAAAGTAAATACTCCCTCCGT 60.370 47.826 0.00 0.00 34.99 4.69
4243 4467 4.840271 CCAAAGTAAATACTCCCTCCGTT 58.160 43.478 0.00 0.00 34.99 4.44
4244 4468 4.874396 CCAAAGTAAATACTCCCTCCGTTC 59.126 45.833 0.00 0.00 34.99 3.95
4245 4469 4.750021 AAGTAAATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 34.99 3.62
4246 4470 2.692041 AGTAAATACTCCCTCCGTTCCG 59.308 50.000 0.00 0.00 0.00 4.30
4247 4471 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
4248 4472 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
4249 4473 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
4250 4474 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
4251 4475 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4252 4476 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4253 4477 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4254 4478 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4255 4479 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4256 4480 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4257 4481 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
4258 4482 3.749609 CCTCCGTTCCGAATTACTTGTTT 59.250 43.478 0.00 0.00 0.00 2.83
4259 4483 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
4260 4484 5.409214 CCTCCGTTCCGAATTACTTGTTTTA 59.591 40.000 0.00 0.00 0.00 1.52
4261 4485 6.401796 CCTCCGTTCCGAATTACTTGTTTTAG 60.402 42.308 0.00 0.00 0.00 1.85
4262 4486 6.222389 TCCGTTCCGAATTACTTGTTTTAGA 58.778 36.000 0.00 0.00 0.00 2.10
4263 4487 6.875195 TCCGTTCCGAATTACTTGTTTTAGAT 59.125 34.615 0.00 0.00 0.00 1.98
4264 4488 7.388500 TCCGTTCCGAATTACTTGTTTTAGATT 59.612 33.333 0.00 0.00 0.00 2.40
4265 4489 8.019094 CCGTTCCGAATTACTTGTTTTAGATTT 58.981 33.333 0.00 0.00 0.00 2.17
4266 4490 8.837059 CGTTCCGAATTACTTGTTTTAGATTTG 58.163 33.333 0.00 0.00 0.00 2.32
4267 4491 9.673454 GTTCCGAATTACTTGTTTTAGATTTGT 57.327 29.630 0.00 0.00 0.00 2.83
4268 4492 9.887406 TTCCGAATTACTTGTTTTAGATTTGTC 57.113 29.630 0.00 0.00 0.00 3.18
4269 4493 9.280174 TCCGAATTACTTGTTTTAGATTTGTCT 57.720 29.630 0.00 0.00 0.00 3.41
4277 4501 9.367444 ACTTGTTTTAGATTTGTCTAGATACGG 57.633 33.333 0.00 0.00 0.00 4.02
4278 4502 9.582431 CTTGTTTTAGATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
4279 4503 9.582431 TTGTTTTAGATTTGTCTAGATACGGAG 57.418 33.333 0.00 0.00 0.00 4.63
4280 4504 8.195436 TGTTTTAGATTTGTCTAGATACGGAGG 58.805 37.037 0.00 0.00 0.00 4.30
4281 4505 7.893124 TTTAGATTTGTCTAGATACGGAGGT 57.107 36.000 0.00 0.00 0.00 3.85
4282 4506 8.985315 TTTAGATTTGTCTAGATACGGAGGTA 57.015 34.615 0.00 0.00 0.00 3.08
4283 4507 9.584008 TTTAGATTTGTCTAGATACGGAGGTAT 57.416 33.333 0.00 0.00 42.01 2.73
4296 4520 4.644498 ACGGAGGTATCTAGTTCTAGAGC 58.356 47.826 13.75 0.00 0.00 4.09
4297 4521 3.680937 CGGAGGTATCTAGTTCTAGAGCG 59.319 52.174 13.75 0.00 0.00 5.03
4298 4522 4.561123 CGGAGGTATCTAGTTCTAGAGCGA 60.561 50.000 13.75 0.00 0.00 4.93
4299 4523 4.692155 GGAGGTATCTAGTTCTAGAGCGAC 59.308 50.000 13.75 11.14 0.00 5.19
4300 4524 5.511888 GGAGGTATCTAGTTCTAGAGCGACT 60.512 48.000 13.75 0.97 0.00 4.18
4301 4525 5.544650 AGGTATCTAGTTCTAGAGCGACTC 58.455 45.833 13.75 0.00 0.00 3.36
4302 4526 4.692155 GGTATCTAGTTCTAGAGCGACTCC 59.308 50.000 13.75 7.10 0.00 3.85
4303 4527 4.699925 ATCTAGTTCTAGAGCGACTCCT 57.300 45.455 13.75 0.00 0.00 3.69
4304 4528 4.062677 TCTAGTTCTAGAGCGACTCCTC 57.937 50.000 5.56 0.00 0.00 3.71
4305 4529 1.658994 AGTTCTAGAGCGACTCCTCG 58.341 55.000 0.47 0.00 43.28 4.63
4332 4556 2.929830 GCTCCTCGCCGTATCTAGA 58.070 57.895 0.00 0.00 0.00 2.43
4333 4557 0.518195 GCTCCTCGCCGTATCTAGAC 59.482 60.000 0.00 0.00 0.00 2.59
4334 4558 1.880271 CTCCTCGCCGTATCTAGACA 58.120 55.000 0.00 0.00 0.00 3.41
4335 4559 2.219458 CTCCTCGCCGTATCTAGACAA 58.781 52.381 0.00 0.00 0.00 3.18
4336 4560 2.617308 CTCCTCGCCGTATCTAGACAAA 59.383 50.000 0.00 0.00 0.00 2.83
4337 4561 3.220110 TCCTCGCCGTATCTAGACAAAT 58.780 45.455 0.00 0.00 0.00 2.32
4338 4562 3.252701 TCCTCGCCGTATCTAGACAAATC 59.747 47.826 0.00 0.00 0.00 2.17
4339 4563 3.253677 CCTCGCCGTATCTAGACAAATCT 59.746 47.826 0.00 0.00 39.15 2.40
4340 4564 4.454847 CCTCGCCGTATCTAGACAAATCTA 59.545 45.833 0.00 0.00 36.29 1.98
4341 4565 5.048921 CCTCGCCGTATCTAGACAAATCTAA 60.049 44.000 0.00 0.00 36.98 2.10
4342 4566 5.998553 TCGCCGTATCTAGACAAATCTAAG 58.001 41.667 0.00 0.00 36.98 2.18
4343 4567 5.761726 TCGCCGTATCTAGACAAATCTAAGA 59.238 40.000 0.00 0.00 36.98 2.10
4344 4568 5.852229 CGCCGTATCTAGACAAATCTAAGAC 59.148 44.000 0.00 0.00 36.98 3.01
4345 4569 6.512903 CGCCGTATCTAGACAAATCTAAGACA 60.513 42.308 0.00 0.00 36.98 3.41
4346 4570 7.201145 GCCGTATCTAGACAAATCTAAGACAA 58.799 38.462 0.00 0.00 36.98 3.18
4347 4571 7.380065 GCCGTATCTAGACAAATCTAAGACAAG 59.620 40.741 0.00 0.00 36.98 3.16
4348 4572 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
4355 4579 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
4356 4580 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
4357 4581 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
4358 4582 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
4566 4804 4.748144 CCCAAGCTGGTGGAGGCC 62.748 72.222 5.98 0.00 41.65 5.19
4713 4954 3.842925 GAGCAAGGCGGTGGTGGAA 62.843 63.158 0.58 0.00 0.00 3.53
4785 5026 2.584418 CCGCACCTCAGCTGATCG 60.584 66.667 18.63 16.98 0.00 3.69
4831 5072 2.699768 ATCACCCGCATTGTTGCCG 61.700 57.895 0.00 0.00 46.57 5.69
5036 5277 8.321621 AGATAAAGATATGATGGAGGATGAGG 57.678 38.462 0.00 0.00 0.00 3.86
5037 5278 5.775813 AAAGATATGATGGAGGATGAGGG 57.224 43.478 0.00 0.00 0.00 4.30
5199 5657 6.039941 TGGGGCATAATTGAATACGTAAAAGG 59.960 38.462 0.00 0.00 0.00 3.11
5252 5710 9.469807 TTGTCACATTGTTACAAATTTATGGAC 57.530 29.630 12.85 6.20 28.58 4.02
5328 5786 6.266131 ACTCCTCCCATGCATTAATTAAGA 57.734 37.500 0.00 0.00 0.00 2.10
5346 5804 2.514824 GCATGTTCGGGAGCCCTC 60.515 66.667 3.70 0.00 0.00 4.30
5389 5847 0.041238 AGGTCCAGATCTCACCCGAA 59.959 55.000 14.51 0.00 0.00 4.30
5401 5859 2.207924 ACCCGAACGCTCCAACTCT 61.208 57.895 0.00 0.00 0.00 3.24
5403 5861 1.291877 CCCGAACGCTCCAACTCTTG 61.292 60.000 0.00 0.00 0.00 3.02
5415 5873 2.586425 CAACTCTTGGCTTTGAGGGAA 58.414 47.619 0.00 0.00 34.84 3.97
5417 5875 3.532641 ACTCTTGGCTTTGAGGGAAAT 57.467 42.857 0.00 0.00 34.84 2.17
5436 5894 0.818938 TAAGCTGGCGATTCGGTACA 59.181 50.000 8.34 0.00 0.00 2.90
5438 5896 1.037493 AGCTGGCGATTCGGTACATA 58.963 50.000 8.34 0.00 0.00 2.29
5457 5915 7.480542 GGTACATACAAATTTGCTTGAGTTACG 59.519 37.037 18.12 0.00 0.00 3.18
5496 5954 2.745281 CTCCGCGAAAACTGGGAAATTA 59.255 45.455 8.23 0.00 0.00 1.40
5504 5962 6.371389 CGAAAACTGGGAAATTAGAGTTGTC 58.629 40.000 0.00 0.00 31.75 3.18
5544 6002 0.594796 CACTGCAAAGTGAAACGGCC 60.595 55.000 0.00 0.00 45.86 6.13
5564 6022 0.664761 GGTACCGGTTCGATCGATCA 59.335 55.000 24.40 1.17 0.00 2.92
5631 6089 1.133482 CCAACCCTTCTTTCCCACACT 60.133 52.381 0.00 0.00 0.00 3.55
5655 6113 0.659957 GGAATGTCATCTTGCTCCGC 59.340 55.000 0.00 0.00 0.00 5.54
5663 6121 4.809496 CTTGCTCCGCATGGGCCT 62.809 66.667 4.53 0.00 38.76 5.19
5666 6124 4.175337 GCTCCGCATGGGCCTGTA 62.175 66.667 4.53 0.00 36.38 2.74
5667 6125 2.589540 CTCCGCATGGGCCTGTAA 59.410 61.111 4.53 0.00 36.38 2.41
5668 6126 1.819632 CTCCGCATGGGCCTGTAAC 60.820 63.158 4.53 0.00 36.38 2.50
5669 6127 2.045438 CCGCATGGGCCTGTAACA 60.045 61.111 4.53 0.00 36.38 2.41
5670 6128 1.453745 CCGCATGGGCCTGTAACAT 60.454 57.895 4.53 0.00 36.38 2.71
5671 6129 1.447317 CCGCATGGGCCTGTAACATC 61.447 60.000 4.53 0.00 36.38 3.06
5672 6130 1.447317 CGCATGGGCCTGTAACATCC 61.447 60.000 4.53 0.00 36.38 3.51
5673 6131 0.106519 GCATGGGCCTGTAACATCCT 60.107 55.000 4.53 0.00 0.00 3.24
5674 6132 1.142870 GCATGGGCCTGTAACATCCTA 59.857 52.381 4.53 0.00 0.00 2.94
5675 6133 2.422803 GCATGGGCCTGTAACATCCTAA 60.423 50.000 4.53 0.00 0.00 2.69
5676 6134 3.897239 CATGGGCCTGTAACATCCTAAA 58.103 45.455 4.53 0.00 0.00 1.85
5677 6135 4.473444 CATGGGCCTGTAACATCCTAAAT 58.527 43.478 4.53 0.00 0.00 1.40
5678 6136 4.601406 TGGGCCTGTAACATCCTAAATT 57.399 40.909 4.53 0.00 0.00 1.82
5679 6137 4.941713 TGGGCCTGTAACATCCTAAATTT 58.058 39.130 4.53 0.00 0.00 1.82
5680 6138 5.337788 TGGGCCTGTAACATCCTAAATTTT 58.662 37.500 4.53 0.00 0.00 1.82
5681 6139 5.420739 TGGGCCTGTAACATCCTAAATTTTC 59.579 40.000 4.53 0.00 0.00 2.29
5682 6140 5.420739 GGGCCTGTAACATCCTAAATTTTCA 59.579 40.000 0.84 0.00 0.00 2.69
5683 6141 6.405842 GGGCCTGTAACATCCTAAATTTTCAG 60.406 42.308 0.84 0.00 0.00 3.02
5684 6142 6.152831 GGCCTGTAACATCCTAAATTTTCAGT 59.847 38.462 0.00 0.00 0.00 3.41
5685 6143 7.309805 GGCCTGTAACATCCTAAATTTTCAGTT 60.310 37.037 0.00 0.00 0.00 3.16
5686 6144 8.088365 GCCTGTAACATCCTAAATTTTCAGTTT 58.912 33.333 0.00 0.00 0.00 2.66
5687 6145 9.410556 CCTGTAACATCCTAAATTTTCAGTTTG 57.589 33.333 0.00 0.00 0.00 2.93
5688 6146 9.410556 CTGTAACATCCTAAATTTTCAGTTTGG 57.589 33.333 0.00 0.00 0.00 3.28
5689 6147 9.137459 TGTAACATCCTAAATTTTCAGTTTGGA 57.863 29.630 0.00 0.00 0.00 3.53
5692 6150 8.193953 ACATCCTAAATTTTCAGTTTGGATGT 57.806 30.769 19.10 19.10 43.24 3.06
5693 6151 8.650490 ACATCCTAAATTTTCAGTTTGGATGTT 58.350 29.630 19.10 9.02 44.14 2.71
5743 6201 8.173775 TCATATTTTATTTGCATTTTGGTTGCG 58.826 29.630 0.00 0.00 43.10 4.85
5744 6202 5.991328 TTTTATTTGCATTTTGGTTGCGA 57.009 30.435 0.00 0.00 43.10 5.10
5745 6203 5.588568 TTTATTTGCATTTTGGTTGCGAG 57.411 34.783 0.00 0.00 43.10 5.03
5746 6204 1.216122 TTTGCATTTTGGTTGCGAGC 58.784 45.000 0.00 0.00 43.10 5.03
5747 6205 0.599728 TTGCATTTTGGTTGCGAGCC 60.600 50.000 0.00 0.00 43.10 4.70
5748 6206 1.290009 GCATTTTGGTTGCGAGCCT 59.710 52.632 0.00 0.00 0.00 4.58
5749 6207 0.525761 GCATTTTGGTTGCGAGCCTA 59.474 50.000 0.00 0.00 0.00 3.93
5750 6208 1.468054 GCATTTTGGTTGCGAGCCTAG 60.468 52.381 0.00 0.00 0.00 3.02
5751 6209 2.083774 CATTTTGGTTGCGAGCCTAGA 58.916 47.619 0.00 0.00 0.00 2.43
5752 6210 2.264005 TTTTGGTTGCGAGCCTAGAA 57.736 45.000 0.00 0.00 0.00 2.10
5753 6211 2.264005 TTTGGTTGCGAGCCTAGAAA 57.736 45.000 0.00 0.00 0.00 2.52
5754 6212 2.489938 TTGGTTGCGAGCCTAGAAAT 57.510 45.000 0.00 0.00 0.00 2.17
5755 6213 2.024176 TGGTTGCGAGCCTAGAAATC 57.976 50.000 0.00 0.00 0.00 2.17
5756 6214 1.555075 TGGTTGCGAGCCTAGAAATCT 59.445 47.619 0.00 0.00 0.00 2.40
5757 6215 2.027192 TGGTTGCGAGCCTAGAAATCTT 60.027 45.455 0.00 0.00 0.00 2.40
5758 6216 3.196901 TGGTTGCGAGCCTAGAAATCTTA 59.803 43.478 0.00 0.00 0.00 2.10
5759 6217 4.189231 GGTTGCGAGCCTAGAAATCTTAA 58.811 43.478 0.00 0.00 0.00 1.85
5760 6218 4.271291 GGTTGCGAGCCTAGAAATCTTAAG 59.729 45.833 0.00 0.00 0.00 1.85
5761 6219 3.458189 TGCGAGCCTAGAAATCTTAAGC 58.542 45.455 0.00 0.00 0.00 3.09
5762 6220 3.118775 TGCGAGCCTAGAAATCTTAAGCA 60.119 43.478 0.00 0.00 0.00 3.91
5763 6221 3.871594 GCGAGCCTAGAAATCTTAAGCAA 59.128 43.478 0.00 0.00 0.00 3.91
5764 6222 4.260415 GCGAGCCTAGAAATCTTAAGCAAC 60.260 45.833 0.00 0.00 0.00 4.17
5765 6223 5.112686 CGAGCCTAGAAATCTTAAGCAACT 58.887 41.667 0.00 0.00 0.00 3.16
5766 6224 5.233263 CGAGCCTAGAAATCTTAAGCAACTC 59.767 44.000 0.00 0.00 0.00 3.01
5767 6225 6.054860 AGCCTAGAAATCTTAAGCAACTCA 57.945 37.500 0.00 0.00 0.00 3.41
5768 6226 6.476378 AGCCTAGAAATCTTAAGCAACTCAA 58.524 36.000 0.00 0.00 0.00 3.02
5769 6227 7.115414 AGCCTAGAAATCTTAAGCAACTCAAT 58.885 34.615 0.00 0.00 0.00 2.57
5770 6228 7.066766 AGCCTAGAAATCTTAAGCAACTCAATG 59.933 37.037 0.00 0.00 0.00 2.82
5771 6229 7.066284 GCCTAGAAATCTTAAGCAACTCAATGA 59.934 37.037 0.00 0.00 0.00 2.57
5772 6230 8.394121 CCTAGAAATCTTAAGCAACTCAATGAC 58.606 37.037 0.00 0.00 0.00 3.06
5773 6231 7.150783 AGAAATCTTAAGCAACTCAATGACC 57.849 36.000 0.00 0.00 0.00 4.02
5774 6232 5.904362 AATCTTAAGCAACTCAATGACCC 57.096 39.130 0.00 0.00 0.00 4.46
5775 6233 4.365514 TCTTAAGCAACTCAATGACCCA 57.634 40.909 0.00 0.00 0.00 4.51
5776 6234 4.724399 TCTTAAGCAACTCAATGACCCAA 58.276 39.130 0.00 0.00 0.00 4.12
5777 6235 4.761739 TCTTAAGCAACTCAATGACCCAAG 59.238 41.667 0.00 0.00 0.00 3.61
5778 6236 2.957402 AGCAACTCAATGACCCAAGA 57.043 45.000 0.00 0.00 0.00 3.02
5779 6237 3.228188 AGCAACTCAATGACCCAAGAA 57.772 42.857 0.00 0.00 0.00 2.52
5780 6238 3.152341 AGCAACTCAATGACCCAAGAAG 58.848 45.455 0.00 0.00 0.00 2.85
5781 6239 3.149196 GCAACTCAATGACCCAAGAAGA 58.851 45.455 0.00 0.00 0.00 2.87
5782 6240 3.190118 GCAACTCAATGACCCAAGAAGAG 59.810 47.826 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 54 5.183228 GTCCTTAATTAAGCAGTGCCTGTA 58.817 41.667 18.18 0.00 33.43 2.74
48 55 4.010349 GTCCTTAATTAAGCAGTGCCTGT 58.990 43.478 18.18 0.00 33.43 4.00
49 56 3.063997 CGTCCTTAATTAAGCAGTGCCTG 59.936 47.826 18.18 4.06 32.02 4.85
50 57 3.270877 CGTCCTTAATTAAGCAGTGCCT 58.729 45.455 18.18 0.08 32.02 4.75
51 58 3.007635 ACGTCCTTAATTAAGCAGTGCC 58.992 45.455 18.18 0.00 32.02 5.01
112 119 2.399600 AAAAATGGAGCAGGCCCCCA 62.400 55.000 0.00 2.11 0.00 4.96
251 271 1.961277 GTGGTGACTGTGAAGCGGG 60.961 63.158 0.00 0.00 0.00 6.13
253 273 0.514255 CATGTGGTGACTGTGAAGCG 59.486 55.000 0.00 0.00 0.00 4.68
377 458 7.839680 TTTCCTTTGCCTTTCTCTTCTTAAT 57.160 32.000 0.00 0.00 0.00 1.40
379 460 7.654022 TTTTTCCTTTGCCTTTCTCTTCTTA 57.346 32.000 0.00 0.00 0.00 2.10
380 461 6.544928 TTTTTCCTTTGCCTTTCTCTTCTT 57.455 33.333 0.00 0.00 0.00 2.52
422 503 6.494835 ACTGCAAAAAGGAACTGGATAAAGAT 59.505 34.615 0.00 0.00 40.86 2.40
423 504 5.833131 ACTGCAAAAAGGAACTGGATAAAGA 59.167 36.000 0.00 0.00 40.86 2.52
424 505 6.089249 ACTGCAAAAAGGAACTGGATAAAG 57.911 37.500 0.00 0.00 40.86 1.85
425 506 6.279882 CAACTGCAAAAAGGAACTGGATAAA 58.720 36.000 0.00 0.00 40.86 1.40
427 508 4.261994 GCAACTGCAAAAAGGAACTGGATA 60.262 41.667 0.00 0.00 39.30 2.59
428 509 3.493176 GCAACTGCAAAAAGGAACTGGAT 60.493 43.478 0.00 0.00 39.30 3.41
474 563 2.420628 ACGCAACAACATCACCATTG 57.579 45.000 0.00 0.00 0.00 2.82
475 564 3.122297 CAAACGCAACAACATCACCATT 58.878 40.909 0.00 0.00 0.00 3.16
494 583 1.462426 AACCACCCCCAGTTATCCAA 58.538 50.000 0.00 0.00 0.00 3.53
502 591 1.303643 GAGCAGAAACCACCCCCAG 60.304 63.158 0.00 0.00 0.00 4.45
508 597 0.674895 ATCCGCAGAGCAGAAACCAC 60.675 55.000 0.00 0.00 0.00 4.16
509 598 0.901827 TATCCGCAGAGCAGAAACCA 59.098 50.000 0.00 0.00 0.00 3.67
518 607 3.188048 GCAAATCCTCATTATCCGCAGAG 59.812 47.826 0.00 0.00 0.00 3.35
535 624 8.757982 ATAGAGATAGTGGACATTTTGCAAAT 57.242 30.769 13.65 0.00 0.00 2.32
602 696 6.608002 CCTACTCCTCTGGTCAAAGTAACTAT 59.392 42.308 0.00 0.00 0.00 2.12
617 711 0.616111 CCACCAGCACCTACTCCTCT 60.616 60.000 0.00 0.00 0.00 3.69
670 764 3.991725 GAAGCTCTGCCCTGCCCTG 62.992 68.421 0.00 0.00 0.00 4.45
671 765 3.726144 GAAGCTCTGCCCTGCCCT 61.726 66.667 0.00 0.00 0.00 5.19
751 866 3.003173 TGAAGCGGGAGAGTGGGG 61.003 66.667 0.00 0.00 0.00 4.96
785 901 1.066502 GCAGAGGTGGGAGAAAGAGAC 60.067 57.143 0.00 0.00 0.00 3.36
812 928 3.430236 CGGAATTGATTTAAGGGTTGGGC 60.430 47.826 0.00 0.00 0.00 5.36
813 929 4.020543 TCGGAATTGATTTAAGGGTTGGG 58.979 43.478 0.00 0.00 0.00 4.12
814 930 4.440112 GCTCGGAATTGATTTAAGGGTTGG 60.440 45.833 0.00 0.00 0.00 3.77
816 932 4.157840 GTGCTCGGAATTGATTTAAGGGTT 59.842 41.667 0.00 0.00 0.00 4.11
817 933 3.694566 GTGCTCGGAATTGATTTAAGGGT 59.305 43.478 0.00 0.00 0.00 4.34
823 941 2.749621 GTGGAGTGCTCGGAATTGATTT 59.250 45.455 0.00 0.00 0.00 2.17
916 1034 1.139163 CCAAACAAGATTGCGCCAAC 58.861 50.000 4.18 0.00 0.00 3.77
926 1044 4.580167 CAGGTGATCAAGAACCAAACAAGA 59.420 41.667 0.00 0.00 39.05 3.02
973 1114 4.173256 CACAAACTGTCTTGAAACCAACC 58.827 43.478 8.86 0.00 0.00 3.77
974 1115 4.082463 TCCACAAACTGTCTTGAAACCAAC 60.082 41.667 8.86 0.00 0.00 3.77
977 1118 3.945285 TCTCCACAAACTGTCTTGAAACC 59.055 43.478 8.86 0.00 0.00 3.27
978 1119 5.560966 TTCTCCACAAACTGTCTTGAAAC 57.439 39.130 8.86 0.00 0.00 2.78
983 1124 5.070981 TCTCTCATTCTCCACAAACTGTCTT 59.929 40.000 0.00 0.00 0.00 3.01
984 1125 4.590647 TCTCTCATTCTCCACAAACTGTCT 59.409 41.667 0.00 0.00 0.00 3.41
986 1127 4.590647 TCTCTCTCATTCTCCACAAACTGT 59.409 41.667 0.00 0.00 0.00 3.55
987 1128 5.144692 TCTCTCTCATTCTCCACAAACTG 57.855 43.478 0.00 0.00 0.00 3.16
988 1129 5.338219 CCATCTCTCTCATTCTCCACAAACT 60.338 44.000 0.00 0.00 0.00 2.66
990 1131 4.779489 TCCATCTCTCTCATTCTCCACAAA 59.221 41.667 0.00 0.00 0.00 2.83
993 1134 3.321682 CCTCCATCTCTCTCATTCTCCAC 59.678 52.174 0.00 0.00 0.00 4.02
994 1135 3.574749 CCTCCATCTCTCTCATTCTCCA 58.425 50.000 0.00 0.00 0.00 3.86
995 1136 2.299867 GCCTCCATCTCTCTCATTCTCC 59.700 54.545 0.00 0.00 0.00 3.71
996 1137 2.964464 TGCCTCCATCTCTCTCATTCTC 59.036 50.000 0.00 0.00 0.00 2.87
1341 1493 8.046107 AGGGAAAATCTCAAATCTACAGAGAAG 58.954 37.037 0.00 0.00 41.30 2.85
1393 1552 4.753610 TGCAGATGAGAGTTTGAGTTTCTG 59.246 41.667 0.00 0.00 34.04 3.02
1465 1624 2.645838 TGCTTGCCTCTTTTCTGAGT 57.354 45.000 0.00 0.00 32.50 3.41
1580 1752 1.086067 ATGATGCTGAGTGCGGTTCG 61.086 55.000 0.00 0.00 46.63 3.95
1585 1757 1.200716 ACCAAAATGATGCTGAGTGCG 59.799 47.619 0.00 0.00 46.63 5.34
1726 1898 1.213926 AGGATTGGGCTCTCATTGGAC 59.786 52.381 0.00 0.00 0.00 4.02
1905 2087 0.617413 CCAGGTGCTTGATCTCCAGT 59.383 55.000 0.00 0.00 0.00 4.00
2028 2210 2.653702 GCAGACCGTGAGCTCACT 59.346 61.111 36.78 24.03 44.34 3.41
2048 2230 0.035056 CTTGGGCGTTTCCTCCATCT 60.035 55.000 0.00 0.00 34.39 2.90
2100 2282 0.950116 GGCAGCTGTAATGGAGCATC 59.050 55.000 16.64 0.00 39.05 3.91
2354 2536 1.959042 ACTGTCTGAAGCCAACTGTG 58.041 50.000 0.00 0.00 0.00 3.66
2365 2547 5.879777 TGAACTTCAACATGAAACTGTCTGA 59.120 36.000 0.00 0.00 35.73 3.27
2366 2548 6.037500 TCTGAACTTCAACATGAAACTGTCTG 59.962 38.462 0.00 0.00 35.73 3.51
2367 2549 6.037610 GTCTGAACTTCAACATGAAACTGTCT 59.962 38.462 0.00 0.00 35.73 3.41
2368 2550 6.183360 TGTCTGAACTTCAACATGAAACTGTC 60.183 38.462 0.00 0.00 35.73 3.51
2369 2551 5.647658 TGTCTGAACTTCAACATGAAACTGT 59.352 36.000 0.00 0.00 35.73 3.55
2370 2552 5.967674 GTGTCTGAACTTCAACATGAAACTG 59.032 40.000 0.00 0.00 35.73 3.16
2371 2553 5.647658 TGTGTCTGAACTTCAACATGAAACT 59.352 36.000 0.00 0.00 35.73 2.66
2383 2565 8.179509 ACTAGTAGTATGTTGTGTCTGAACTT 57.820 34.615 0.00 0.00 0.00 2.66
2385 2567 9.339492 GTTACTAGTAGTATGTTGTGTCTGAAC 57.661 37.037 10.82 0.18 29.64 3.18
2530 2714 9.586150 GCGAAATAACATAATAATGTCAGTCAG 57.414 33.333 0.00 0.00 45.79 3.51
2533 2717 8.559536 CCTGCGAAATAACATAATAATGTCAGT 58.440 33.333 0.00 0.00 45.79 3.41
2538 2722 8.783093 TCCTTCCTGCGAAATAACATAATAATG 58.217 33.333 0.00 0.00 39.17 1.90
2542 2726 6.591935 TCTCCTTCCTGCGAAATAACATAAT 58.408 36.000 0.00 0.00 0.00 1.28
2555 2740 2.124778 GCAGCCTCTCCTTCCTGC 60.125 66.667 0.00 0.00 43.10 4.85
2642 2827 3.458118 TCTCCTCAGAAAGGTTGTTTGGA 59.542 43.478 0.00 0.00 46.32 3.53
2645 2830 4.141158 ACCATCTCCTCAGAAAGGTTGTTT 60.141 41.667 0.00 0.00 46.32 2.83
2756 2941 0.954449 AGACCACACTCGTCGTCGAT 60.954 55.000 5.00 0.00 45.21 3.59
2897 3082 1.189524 TCGACGGGACCTCAACCATT 61.190 55.000 0.00 0.00 0.00 3.16
2979 3164 5.880341 AGTACGAAAATAAAATGCAGGAGC 58.120 37.500 0.00 0.00 42.57 4.70
2980 3165 7.308782 AGAGTACGAAAATAAAATGCAGGAG 57.691 36.000 0.00 0.00 0.00 3.69
2981 3166 6.315393 GGAGAGTACGAAAATAAAATGCAGGA 59.685 38.462 0.00 0.00 0.00 3.86
2982 3167 6.093495 TGGAGAGTACGAAAATAAAATGCAGG 59.907 38.462 0.00 0.00 0.00 4.85
2983 3168 7.072177 TGGAGAGTACGAAAATAAAATGCAG 57.928 36.000 0.00 0.00 0.00 4.41
2984 3169 7.441890 TTGGAGAGTACGAAAATAAAATGCA 57.558 32.000 0.00 0.00 0.00 3.96
2985 3170 7.007099 CGTTTGGAGAGTACGAAAATAAAATGC 59.993 37.037 0.00 0.00 37.47 3.56
2986 3171 8.013378 ACGTTTGGAGAGTACGAAAATAAAATG 58.987 33.333 0.00 0.00 38.56 2.32
2987 3172 8.091385 ACGTTTGGAGAGTACGAAAATAAAAT 57.909 30.769 0.00 0.00 38.56 1.82
2988 3173 7.481275 ACGTTTGGAGAGTACGAAAATAAAA 57.519 32.000 0.00 0.00 38.56 1.52
2989 3174 7.439056 AGAACGTTTGGAGAGTACGAAAATAAA 59.561 33.333 0.46 0.00 38.56 1.40
2992 3177 5.295152 AGAACGTTTGGAGAGTACGAAAAT 58.705 37.500 0.46 0.00 38.56 1.82
2998 3183 3.739810 GGACAAGAACGTTTGGAGAGTAC 59.260 47.826 0.46 0.00 32.32 2.73
3001 3186 2.833794 TGGACAAGAACGTTTGGAGAG 58.166 47.619 0.46 0.00 32.32 3.20
3007 3192 4.721132 TCCCTATTTGGACAAGAACGTTT 58.279 39.130 0.46 0.00 38.35 3.60
3008 3193 4.360951 TCCCTATTTGGACAAGAACGTT 57.639 40.909 0.00 0.00 38.35 3.99
3009 3194 4.360951 TTCCCTATTTGGACAAGAACGT 57.639 40.909 0.00 0.00 38.35 3.99
3010 3195 5.183140 ACATTTCCCTATTTGGACAAGAACG 59.817 40.000 0.00 0.00 38.35 3.95
3011 3196 6.590234 ACATTTCCCTATTTGGACAAGAAC 57.410 37.500 0.00 0.00 38.35 3.01
3012 3197 6.373216 CGTACATTTCCCTATTTGGACAAGAA 59.627 38.462 0.00 0.00 38.35 2.52
3013 3198 5.878116 CGTACATTTCCCTATTTGGACAAGA 59.122 40.000 0.00 0.00 38.35 3.02
3014 3199 5.878116 TCGTACATTTCCCTATTTGGACAAG 59.122 40.000 0.00 0.00 38.35 3.16
3015 3200 5.806818 TCGTACATTTCCCTATTTGGACAA 58.193 37.500 0.00 0.00 38.35 3.18
3016 3201 5.423704 TCGTACATTTCCCTATTTGGACA 57.576 39.130 0.00 0.00 38.35 4.02
3017 3202 6.746745 TTTCGTACATTTCCCTATTTGGAC 57.253 37.500 0.00 0.00 38.35 4.02
3018 3203 7.948034 ATTTTCGTACATTTCCCTATTTGGA 57.052 32.000 0.00 0.00 38.35 3.53
3019 3204 8.466798 AGAATTTTCGTACATTTCCCTATTTGG 58.533 33.333 0.00 0.00 0.00 3.28
3020 3205 9.855021 AAGAATTTTCGTACATTTCCCTATTTG 57.145 29.630 0.00 0.00 0.00 2.32
3021 3206 9.855021 CAAGAATTTTCGTACATTTCCCTATTT 57.145 29.630 0.00 0.00 0.00 1.40
3022 3207 9.020731 ACAAGAATTTTCGTACATTTCCCTATT 57.979 29.630 0.00 0.00 0.00 1.73
3023 3208 8.458843 CACAAGAATTTTCGTACATTTCCCTAT 58.541 33.333 0.00 0.00 0.00 2.57
3024 3209 7.446013 ACACAAGAATTTTCGTACATTTCCCTA 59.554 33.333 0.00 0.00 0.00 3.53
3025 3210 6.264518 ACACAAGAATTTTCGTACATTTCCCT 59.735 34.615 0.00 0.00 0.00 4.20
3026 3211 6.443792 ACACAAGAATTTTCGTACATTTCCC 58.556 36.000 0.00 0.00 0.00 3.97
3027 3212 7.860872 AGAACACAAGAATTTTCGTACATTTCC 59.139 33.333 0.00 0.00 0.00 3.13
3028 3213 8.782533 AGAACACAAGAATTTTCGTACATTTC 57.217 30.769 0.00 0.00 0.00 2.17
3033 3218 9.659830 AACAATAGAACACAAGAATTTTCGTAC 57.340 29.630 0.00 0.00 0.00 3.67
3036 3221 8.781067 TGAACAATAGAACACAAGAATTTTCG 57.219 30.769 0.00 0.00 0.00 3.46
3054 3243 5.560724 ACCACATTAGTAGCACTGAACAAT 58.439 37.500 0.00 0.00 0.00 2.71
3247 3436 8.624367 ACTGTATCTATGTGAGTAGTATGGAC 57.376 38.462 0.00 0.00 0.00 4.02
3408 3600 1.166531 AAGAACGGCGCTTGCTTTCT 61.167 50.000 6.90 4.36 40.41 2.52
3422 3615 4.827304 AGAAAGCAGCAAGAAGAAGAAC 57.173 40.909 0.00 0.00 0.00 3.01
3471 3664 4.676951 TCGGCCTGGGCAAAAGGG 62.677 66.667 21.03 2.56 44.11 3.95
3473 3666 2.282462 ACTCGGCCTGGGCAAAAG 60.282 61.111 21.03 15.48 44.11 2.27
3479 3672 3.335356 ATCTTGCACTCGGCCTGGG 62.335 63.158 0.00 0.00 43.89 4.45
3486 3683 3.257561 CCGGCGATCTTGCACTCG 61.258 66.667 9.30 7.87 37.92 4.18
3564 3761 2.932184 TGGGAGTACATACCTGTCCA 57.068 50.000 0.00 0.00 36.79 4.02
3595 3792 4.374843 TGACCAAATGATGCAACATAGC 57.625 40.909 10.15 0.00 0.00 2.97
3596 3793 6.198650 TCTTGACCAAATGATGCAACATAG 57.801 37.500 10.15 6.16 0.00 2.23
3597 3794 6.350361 CCTTCTTGACCAAATGATGCAACATA 60.350 38.462 10.15 0.00 0.00 2.29
3598 3795 5.471556 TTCTTGACCAAATGATGCAACAT 57.528 34.783 3.21 3.21 0.00 2.71
3599 3796 4.262121 CCTTCTTGACCAAATGATGCAACA 60.262 41.667 0.00 0.00 0.00 3.33
3600 3797 4.240096 CCTTCTTGACCAAATGATGCAAC 58.760 43.478 0.00 0.00 0.00 4.17
3601 3798 3.306225 GCCTTCTTGACCAAATGATGCAA 60.306 43.478 0.00 0.00 0.00 4.08
3602 3799 2.231964 GCCTTCTTGACCAAATGATGCA 59.768 45.455 0.00 0.00 0.00 3.96
3603 3800 2.231964 TGCCTTCTTGACCAAATGATGC 59.768 45.455 0.00 0.00 0.00 3.91
3604 3801 4.430007 CATGCCTTCTTGACCAAATGATG 58.570 43.478 0.00 0.00 0.00 3.07
3605 3802 3.449737 CCATGCCTTCTTGACCAAATGAT 59.550 43.478 0.00 0.00 0.00 2.45
3606 3803 2.827322 CCATGCCTTCTTGACCAAATGA 59.173 45.455 0.00 0.00 0.00 2.57
3607 3804 2.564062 ACCATGCCTTCTTGACCAAATG 59.436 45.455 0.00 0.00 0.00 2.32
3635 3832 5.183331 GCATTGGAGATACTACCACTCGATA 59.817 44.000 0.00 0.00 35.81 2.92
3686 3883 3.046390 GGAACATTCTACTCGATCTGCG 58.954 50.000 0.00 0.00 42.69 5.18
3728 3925 7.765695 AGTGTTACAATCAGAATTTGTCCAT 57.234 32.000 0.00 0.00 38.26 3.41
3920 4118 3.246699 GTGCGTGCTAGAGTCTAGAGTAG 59.753 52.174 27.96 16.48 0.00 2.57
3921 4119 3.196463 GTGCGTGCTAGAGTCTAGAGTA 58.804 50.000 27.96 15.36 0.00 2.59
4014 4238 3.093717 AGTCAAAAGAAAGTCTCGCGA 57.906 42.857 9.26 9.26 0.00 5.87
4082 4306 3.386402 GGGAAACATTTGTTCCACTCCAA 59.614 43.478 11.87 0.00 37.25 3.53
4130 4354 3.057386 TCATCATTGTGTTGTGTCATGCC 60.057 43.478 0.00 0.00 0.00 4.40
4136 4360 6.873076 AGTTTTGTTTCATCATTGTGTTGTGT 59.127 30.769 0.00 0.00 0.00 3.72
4137 4361 7.293402 AGTTTTGTTTCATCATTGTGTTGTG 57.707 32.000 0.00 0.00 0.00 3.33
4138 4362 7.903995 AAGTTTTGTTTCATCATTGTGTTGT 57.096 28.000 0.00 0.00 0.00 3.32
4139 4363 9.687717 GTTAAGTTTTGTTTCATCATTGTGTTG 57.312 29.630 0.00 0.00 0.00 3.33
4140 4364 9.651913 AGTTAAGTTTTGTTTCATCATTGTGTT 57.348 25.926 0.00 0.00 0.00 3.32
4241 4465 9.673454 ACAAATCTAAAACAAGTAATTCGGAAC 57.327 29.630 0.00 0.00 0.00 3.62
4242 4466 9.887406 GACAAATCTAAAACAAGTAATTCGGAA 57.113 29.630 0.00 0.00 0.00 4.30
4243 4467 9.280174 AGACAAATCTAAAACAAGTAATTCGGA 57.720 29.630 0.00 0.00 31.46 4.55
4251 4475 9.367444 CCGTATCTAGACAAATCTAAAACAAGT 57.633 33.333 0.00 0.00 36.98 3.16
4252 4476 9.582431 TCCGTATCTAGACAAATCTAAAACAAG 57.418 33.333 0.00 0.00 36.98 3.16
4253 4477 9.582431 CTCCGTATCTAGACAAATCTAAAACAA 57.418 33.333 0.00 0.00 36.98 2.83
4254 4478 8.195436 CCTCCGTATCTAGACAAATCTAAAACA 58.805 37.037 0.00 0.00 36.98 2.83
4255 4479 8.196103 ACCTCCGTATCTAGACAAATCTAAAAC 58.804 37.037 0.00 0.00 36.98 2.43
4256 4480 8.302515 ACCTCCGTATCTAGACAAATCTAAAA 57.697 34.615 0.00 0.00 36.98 1.52
4257 4481 7.893124 ACCTCCGTATCTAGACAAATCTAAA 57.107 36.000 0.00 0.00 36.98 1.85
4258 4482 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
4259 4483 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
4260 4484 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
4272 4496 6.408869 GCTCTAGAACTAGATACCTCCGTAT 58.591 44.000 11.26 0.00 40.97 3.06
4273 4497 5.566429 CGCTCTAGAACTAGATACCTCCGTA 60.566 48.000 11.26 0.00 40.97 4.02
4274 4498 4.644498 GCTCTAGAACTAGATACCTCCGT 58.356 47.826 11.26 0.00 40.97 4.69
4275 4499 3.680937 CGCTCTAGAACTAGATACCTCCG 59.319 52.174 11.26 5.42 40.97 4.63
4276 4500 4.692155 GTCGCTCTAGAACTAGATACCTCC 59.308 50.000 11.26 0.00 40.97 4.30
4277 4501 5.544650 AGTCGCTCTAGAACTAGATACCTC 58.455 45.833 11.26 3.70 40.97 3.85
4278 4502 5.511888 GGAGTCGCTCTAGAACTAGATACCT 60.512 48.000 11.26 6.23 40.97 3.08
4279 4503 4.692155 GGAGTCGCTCTAGAACTAGATACC 59.308 50.000 11.26 6.32 40.97 2.73
4280 4504 5.544650 AGGAGTCGCTCTAGAACTAGATAC 58.455 45.833 11.26 10.07 40.97 2.24
4281 4505 5.565242 CGAGGAGTCGCTCTAGAACTAGATA 60.565 48.000 11.26 0.00 39.88 1.98
4282 4506 4.638304 GAGGAGTCGCTCTAGAACTAGAT 58.362 47.826 11.26 0.00 40.97 1.98
4283 4507 3.491276 CGAGGAGTCGCTCTAGAACTAGA 60.491 52.174 10.53 10.53 39.88 2.43
4284 4508 2.798283 CGAGGAGTCGCTCTAGAACTAG 59.202 54.545 0.00 2.77 39.88 2.57
4285 4509 2.823984 CGAGGAGTCGCTCTAGAACTA 58.176 52.381 0.00 0.00 39.88 2.24
4286 4510 1.658994 CGAGGAGTCGCTCTAGAACT 58.341 55.000 0.00 0.00 39.88 3.01
4315 4539 1.880271 TGTCTAGATACGGCGAGGAG 58.120 55.000 16.62 3.20 0.00 3.69
4316 4540 2.336945 TTGTCTAGATACGGCGAGGA 57.663 50.000 16.62 0.00 0.00 3.71
4317 4541 3.253677 AGATTTGTCTAGATACGGCGAGG 59.746 47.826 16.62 0.00 0.00 4.63
4318 4542 4.491234 AGATTTGTCTAGATACGGCGAG 57.509 45.455 16.62 0.00 0.00 5.03
4319 4543 5.761726 TCTTAGATTTGTCTAGATACGGCGA 59.238 40.000 16.62 0.00 0.00 5.54
4320 4544 5.852229 GTCTTAGATTTGTCTAGATACGGCG 59.148 44.000 4.80 4.80 0.00 6.46
4321 4545 6.736123 TGTCTTAGATTTGTCTAGATACGGC 58.264 40.000 0.00 0.00 0.00 5.68
4322 4546 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
4329 4553 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
4330 4554 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
4331 4555 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
4332 4556 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
4333 4557 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
4334 4558 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
4335 4559 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
4336 4560 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
4337 4561 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
4338 4562 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
4339 4563 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
4340 4564 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
4341 4565 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
4342 4566 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4343 4567 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4344 4568 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4345 4569 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4346 4570 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4347 4571 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4348 4572 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4349 4573 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
4350 4574 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4351 4575 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
4352 4576 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
4353 4577 1.252904 TTGGTACTCCCTCCGTTCCG 61.253 60.000 0.00 0.00 0.00 4.30
4354 4578 0.248565 GTTGGTACTCCCTCCGTTCC 59.751 60.000 0.00 0.00 0.00 3.62
4355 4579 0.248565 GGTTGGTACTCCCTCCGTTC 59.751 60.000 0.00 0.00 0.00 3.95
4356 4580 0.472352 TGGTTGGTACTCCCTCCGTT 60.472 55.000 0.00 0.00 32.88 4.44
4357 4581 0.903454 CTGGTTGGTACTCCCTCCGT 60.903 60.000 0.00 0.00 32.88 4.69
4358 4582 1.898154 CTGGTTGGTACTCCCTCCG 59.102 63.158 0.00 0.00 32.88 4.63
4359 4583 1.198759 TGCTGGTTGGTACTCCCTCC 61.199 60.000 0.00 0.00 0.00 4.30
4360 4584 0.250513 CTGCTGGTTGGTACTCCCTC 59.749 60.000 0.00 0.00 0.00 4.30
4361 4585 0.473886 ACTGCTGGTTGGTACTCCCT 60.474 55.000 0.00 0.00 0.00 4.20
4362 4586 0.036294 GACTGCTGGTTGGTACTCCC 60.036 60.000 0.00 0.00 0.00 4.30
4363 4587 0.036294 GGACTGCTGGTTGGTACTCC 60.036 60.000 0.00 0.00 0.00 3.85
4364 4588 0.685097 TGGACTGCTGGTTGGTACTC 59.315 55.000 0.00 0.00 0.00 2.59
4566 4804 4.189188 CCGACGTCCCTGGCGTAG 62.189 72.222 10.58 0.00 43.04 3.51
4666 4907 2.765356 CCTGATGCTGCTGCTGCTG 61.765 63.158 27.67 16.73 40.48 4.41
4667 4908 2.438614 CCTGATGCTGCTGCTGCT 60.439 61.111 27.67 15.76 40.48 4.24
4668 4909 3.518998 CCCTGATGCTGCTGCTGC 61.519 66.667 22.51 22.51 40.48 5.25
4669 4910 2.829003 CCCCTGATGCTGCTGCTG 60.829 66.667 17.00 0.77 40.48 4.41
4670 4911 3.013327 TCCCCTGATGCTGCTGCT 61.013 61.111 17.00 2.26 40.48 4.24
4671 4912 2.827642 GTCCCCTGATGCTGCTGC 60.828 66.667 8.89 8.89 40.20 5.25
4672 4913 2.513204 CGTCCCCTGATGCTGCTG 60.513 66.667 0.00 0.00 0.00 4.41
5074 5531 6.183361 CCCCTGCACTCAATACTAAGAGTAAT 60.183 42.308 0.00 0.00 42.87 1.89
5080 5537 2.565841 GCCCCTGCACTCAATACTAAG 58.434 52.381 0.00 0.00 37.47 2.18
5199 5657 9.787532 TGATCATTACTTGTAAAAATTAGCAGC 57.212 29.630 0.00 0.00 0.00 5.25
5248 5706 6.622679 GCGAATTTGTAATGTGAGAATGTCCA 60.623 38.462 0.00 0.00 0.00 4.02
5249 5707 5.739161 GCGAATTTGTAATGTGAGAATGTCC 59.261 40.000 0.00 0.00 0.00 4.02
5252 5710 6.968335 TGATGCGAATTTGTAATGTGAGAATG 59.032 34.615 0.00 0.00 0.00 2.67
5301 5759 6.625532 AATTAATGCATGGGAGGAGTTTTT 57.374 33.333 0.00 0.00 0.00 1.94
5307 5765 5.072741 GCTCTTAATTAATGCATGGGAGGA 58.927 41.667 0.00 0.00 0.00 3.71
5328 5786 3.011517 AGGGCTCCCGAACATGCT 61.012 61.111 0.00 0.00 41.95 3.79
5346 5804 3.999663 GAGTTGATGGAGTTGAGAGTTGG 59.000 47.826 0.00 0.00 0.00 3.77
5355 5813 1.630878 GGACCTGGAGTTGATGGAGTT 59.369 52.381 0.00 0.00 0.00 3.01
5401 5859 3.511146 CAGCTTATTTCCCTCAAAGCCAA 59.489 43.478 2.50 0.00 44.24 4.52
5403 5861 2.428530 CCAGCTTATTTCCCTCAAAGCC 59.571 50.000 2.50 0.00 44.24 4.35
5404 5862 2.159184 GCCAGCTTATTTCCCTCAAAGC 60.159 50.000 0.00 0.00 43.66 3.51
5415 5873 2.159014 TGTACCGAATCGCCAGCTTATT 60.159 45.455 0.00 0.00 0.00 1.40
5417 5875 0.818938 TGTACCGAATCGCCAGCTTA 59.181 50.000 0.00 0.00 0.00 3.09
5436 5894 6.430000 ACTCCGTAACTCAAGCAAATTTGTAT 59.570 34.615 19.03 6.17 0.00 2.29
5438 5896 4.578928 ACTCCGTAACTCAAGCAAATTTGT 59.421 37.500 19.03 3.98 0.00 2.83
5473 5931 0.179040 TTCCCAGTTTTCGCGGAGTT 60.179 50.000 6.13 0.00 0.00 3.01
5474 5932 0.179040 TTTCCCAGTTTTCGCGGAGT 60.179 50.000 6.13 0.00 0.00 3.85
5496 5954 5.450137 CCTCGGTGTAATTATCGACAACTCT 60.450 44.000 0.00 0.00 30.74 3.24
5544 6002 0.385223 GATCGATCGAACCGGTACCG 60.385 60.000 27.68 27.68 39.44 4.02
5564 6022 0.179018 GTGACCAGGTGTTCTTGCCT 60.179 55.000 0.00 0.00 35.04 4.75
5614 6072 1.222567 ACAGTGTGGGAAAGAAGGGT 58.777 50.000 0.00 0.00 0.00 4.34
5631 6089 3.507233 GGAGCAAGATGACATTCCAAACA 59.493 43.478 0.00 0.00 0.00 2.83
5655 6113 3.576078 TTAGGATGTTACAGGCCCATG 57.424 47.619 0.00 0.00 0.00 3.66
5663 6121 9.137459 TCCAAACTGAAAATTTAGGATGTTACA 57.863 29.630 0.00 0.00 0.00 2.41
5666 6124 8.650490 ACATCCAAACTGAAAATTTAGGATGTT 58.350 29.630 15.74 3.56 44.54 2.71
5667 6125 8.193953 ACATCCAAACTGAAAATTTAGGATGT 57.806 30.769 15.74 15.74 43.59 3.06
5717 6175 8.173775 CGCAACCAAAATGCAAATAAAATATGA 58.826 29.630 0.00 0.00 44.01 2.15
5718 6176 8.173775 TCGCAACCAAAATGCAAATAAAATATG 58.826 29.630 0.00 0.00 44.01 1.78
5719 6177 8.261492 TCGCAACCAAAATGCAAATAAAATAT 57.739 26.923 0.00 0.00 44.01 1.28
5720 6178 7.623089 GCTCGCAACCAAAATGCAAATAAAATA 60.623 33.333 0.00 0.00 44.01 1.40
5721 6179 6.551385 TCGCAACCAAAATGCAAATAAAAT 57.449 29.167 0.00 0.00 44.01 1.82
5722 6180 5.559799 GCTCGCAACCAAAATGCAAATAAAA 60.560 36.000 0.00 0.00 44.01 1.52
5723 6181 4.084118 GCTCGCAACCAAAATGCAAATAAA 60.084 37.500 0.00 0.00 44.01 1.40
5724 6182 3.431572 GCTCGCAACCAAAATGCAAATAA 59.568 39.130 0.00 0.00 44.01 1.40
5725 6183 2.992543 GCTCGCAACCAAAATGCAAATA 59.007 40.909 0.00 0.00 44.01 1.40
5726 6184 1.799994 GCTCGCAACCAAAATGCAAAT 59.200 42.857 0.00 0.00 44.01 2.32
5727 6185 1.216122 GCTCGCAACCAAAATGCAAA 58.784 45.000 0.00 0.00 44.01 3.68
5728 6186 0.599728 GGCTCGCAACCAAAATGCAA 60.600 50.000 0.00 0.00 44.01 4.08
5729 6187 1.006337 GGCTCGCAACCAAAATGCA 60.006 52.632 0.00 0.00 44.01 3.96
5730 6188 0.525761 TAGGCTCGCAACCAAAATGC 59.474 50.000 0.00 0.00 40.41 3.56
5731 6189 2.083774 TCTAGGCTCGCAACCAAAATG 58.916 47.619 0.00 0.00 0.00 2.32
5732 6190 2.489938 TCTAGGCTCGCAACCAAAAT 57.510 45.000 0.00 0.00 0.00 1.82
5733 6191 2.264005 TTCTAGGCTCGCAACCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
5734 6192 2.264005 TTTCTAGGCTCGCAACCAAA 57.736 45.000 0.00 0.00 0.00 3.28
5735 6193 2.027192 AGATTTCTAGGCTCGCAACCAA 60.027 45.455 0.00 0.00 0.00 3.67
5736 6194 1.555075 AGATTTCTAGGCTCGCAACCA 59.445 47.619 0.00 0.00 0.00 3.67
5737 6195 2.317530 AGATTTCTAGGCTCGCAACC 57.682 50.000 0.00 0.00 0.00 3.77
5738 6196 4.260415 GCTTAAGATTTCTAGGCTCGCAAC 60.260 45.833 6.67 0.00 0.00 4.17
5739 6197 3.871594 GCTTAAGATTTCTAGGCTCGCAA 59.128 43.478 6.67 0.00 0.00 4.85
5740 6198 3.118775 TGCTTAAGATTTCTAGGCTCGCA 60.119 43.478 6.67 0.00 0.00 5.10
5741 6199 3.458189 TGCTTAAGATTTCTAGGCTCGC 58.542 45.455 6.67 0.00 0.00 5.03
5742 6200 5.112686 AGTTGCTTAAGATTTCTAGGCTCG 58.887 41.667 6.67 0.00 0.00 5.03
5743 6201 6.109359 TGAGTTGCTTAAGATTTCTAGGCTC 58.891 40.000 6.67 1.22 0.00 4.70
5744 6202 6.054860 TGAGTTGCTTAAGATTTCTAGGCT 57.945 37.500 6.67 0.00 0.00 4.58
5745 6203 6.743575 TTGAGTTGCTTAAGATTTCTAGGC 57.256 37.500 6.67 0.00 0.00 3.93
5746 6204 8.394121 GTCATTGAGTTGCTTAAGATTTCTAGG 58.606 37.037 6.67 0.00 0.00 3.02
5747 6205 8.394121 GGTCATTGAGTTGCTTAAGATTTCTAG 58.606 37.037 6.67 0.00 0.00 2.43
5748 6206 7.336931 GGGTCATTGAGTTGCTTAAGATTTCTA 59.663 37.037 6.67 0.00 0.00 2.10
5749 6207 6.151817 GGGTCATTGAGTTGCTTAAGATTTCT 59.848 38.462 6.67 0.00 0.00 2.52
5750 6208 6.071952 TGGGTCATTGAGTTGCTTAAGATTTC 60.072 38.462 6.67 0.00 0.00 2.17
5751 6209 5.774690 TGGGTCATTGAGTTGCTTAAGATTT 59.225 36.000 6.67 0.00 0.00 2.17
5752 6210 5.324409 TGGGTCATTGAGTTGCTTAAGATT 58.676 37.500 6.67 0.00 0.00 2.40
5753 6211 4.922206 TGGGTCATTGAGTTGCTTAAGAT 58.078 39.130 6.67 0.00 0.00 2.40
5754 6212 4.365514 TGGGTCATTGAGTTGCTTAAGA 57.634 40.909 6.67 0.00 0.00 2.10
5755 6213 4.761739 TCTTGGGTCATTGAGTTGCTTAAG 59.238 41.667 0.00 0.00 0.00 1.85
5756 6214 4.724399 TCTTGGGTCATTGAGTTGCTTAA 58.276 39.130 0.00 0.00 0.00 1.85
5757 6215 4.365514 TCTTGGGTCATTGAGTTGCTTA 57.634 40.909 0.00 0.00 0.00 3.09
5758 6216 3.228188 TCTTGGGTCATTGAGTTGCTT 57.772 42.857 0.00 0.00 0.00 3.91
5759 6217 2.957402 TCTTGGGTCATTGAGTTGCT 57.043 45.000 0.00 0.00 0.00 3.91
5760 6218 3.149196 TCTTCTTGGGTCATTGAGTTGC 58.851 45.455 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.