Multiple sequence alignment - TraesCS2A01G266400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G266400 chr2A 100.000 2318 0 0 1 2318 423431654 423433971 0.000000e+00 4281.0
1 TraesCS2A01G266400 chr2A 97.596 1955 38 5 1 1953 618279954 618278007 0.000000e+00 3341.0
2 TraesCS2A01G266400 chr2A 100.000 28 0 0 1968 1995 423433648 423433621 4.000000e-03 52.8
3 TraesCS2A01G266400 chr7A 97.851 1954 39 3 1 1953 4959840 4961791 0.000000e+00 3373.0
4 TraesCS2A01G266400 chrUn 97.749 1955 35 5 1 1953 189392541 189394488 0.000000e+00 3358.0
5 TraesCS2A01G266400 chr5A 97.647 1955 37 5 1 1953 300072981 300074928 0.000000e+00 3347.0
6 TraesCS2A01G266400 chr5A 97.389 1953 42 5 1 1953 16602917 16600974 0.000000e+00 3315.0
7 TraesCS2A01G266400 chr5A 98.305 295 4 1 2024 2318 162136949 162137242 1.230000e-142 516.0
8 TraesCS2A01G266400 chr5A 99.320 147 1 0 2066 2212 493207606 493207460 1.370000e-67 267.0
9 TraesCS2A01G266400 chr6A 97.645 1953 39 4 1 1953 289128634 289130579 0.000000e+00 3345.0
10 TraesCS2A01G266400 chr4A 97.593 1953 43 4 1 1953 67587529 67585581 0.000000e+00 3343.0
11 TraesCS2A01G266400 chr7D 97.545 1955 39 5 1 1953 626698488 626696541 0.000000e+00 3336.0
12 TraesCS2A01G266400 chr7B 97.494 1955 40 5 1 1953 743086201 743088148 0.000000e+00 3330.0
13 TraesCS2A01G266400 chr6B 92.199 141 11 0 2178 2318 625638448 625638308 1.400000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G266400 chr2A 423431654 423433971 2317 False 4281 4281 100.000 1 2318 1 chr2A.!!$F1 2317
1 TraesCS2A01G266400 chr2A 618278007 618279954 1947 True 3341 3341 97.596 1 1953 1 chr2A.!!$R2 1952
2 TraesCS2A01G266400 chr7A 4959840 4961791 1951 False 3373 3373 97.851 1 1953 1 chr7A.!!$F1 1952
3 TraesCS2A01G266400 chrUn 189392541 189394488 1947 False 3358 3358 97.749 1 1953 1 chrUn.!!$F1 1952
4 TraesCS2A01G266400 chr5A 300072981 300074928 1947 False 3347 3347 97.647 1 1953 1 chr5A.!!$F2 1952
5 TraesCS2A01G266400 chr5A 16600974 16602917 1943 True 3315 3315 97.389 1 1953 1 chr5A.!!$R1 1952
6 TraesCS2A01G266400 chr6A 289128634 289130579 1945 False 3345 3345 97.645 1 1953 1 chr6A.!!$F1 1952
7 TraesCS2A01G266400 chr4A 67585581 67587529 1948 True 3343 3343 97.593 1 1953 1 chr4A.!!$R1 1952
8 TraesCS2A01G266400 chr7D 626696541 626698488 1947 True 3336 3336 97.545 1 1953 1 chr7D.!!$R1 1952
9 TraesCS2A01G266400 chr7B 743086201 743088148 1947 False 3330 3330 97.494 1 1953 1 chr7B.!!$F1 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 436 0.036732 CAAAGGGCACAGACAGGCTA 59.963 55.0 0.0 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2093 0.041926 GTAAACGTTGTGCGGGTGAC 60.042 55.0 0.0 0.0 46.52 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.288961 TCATAAAGGGCTTCGACGAC 57.711 50.000 0.00 0.00 0.00 4.34
159 160 0.179026 TCGCGTATCTAGAGCCCAGT 60.179 55.000 5.77 0.00 0.00 4.00
179 180 1.187087 ATCTCTCCTGAACGACACCC 58.813 55.000 0.00 0.00 0.00 4.61
207 208 4.712337 CAGACTCTACTGGTGGTATTTCCT 59.288 45.833 0.00 0.00 34.41 3.36
215 216 1.065709 GGTGGTATTTCCTGAGGCGAA 60.066 52.381 0.00 0.00 37.07 4.70
435 436 0.036732 CAAAGGGCACAGACAGGCTA 59.963 55.000 0.00 0.00 0.00 3.93
572 574 5.533903 CCATCTCAATCCAAAATCTCCGATT 59.466 40.000 0.00 0.00 0.00 3.34
577 579 6.649155 TCAATCCAAAATCTCCGATTGTCTA 58.351 36.000 8.11 0.00 41.41 2.59
721 723 9.671279 TTCTATAATATCTCGGGTGAATACGTA 57.329 33.333 0.00 0.00 0.00 3.57
813 815 6.534793 GCAAGTCAATTTTGAGGTTTTCAAGA 59.465 34.615 0.00 0.00 46.01 3.02
821 823 4.447138 TGAGGTTTTCAAGAAAGGGCTA 57.553 40.909 0.00 0.00 31.34 3.93
1012 1015 9.494271 AGCGTAGATTCAATATGTTGATTGTAT 57.506 29.630 5.66 0.00 43.49 2.29
1148 1154 1.224120 TCCTCCTCAAGCCCCTATCAT 59.776 52.381 0.00 0.00 0.00 2.45
1163 1169 4.466370 CCCTATCATAAGACCAAGCGGATA 59.534 45.833 0.00 0.00 35.59 2.59
1186 1192 0.251386 TCCCGCAGAAGACTCAGAGT 60.251 55.000 1.46 1.46 0.00 3.24
1326 1332 4.223477 AGCATTGTGGAATAGTGGCATTTT 59.777 37.500 0.00 0.00 0.00 1.82
1381 1387 0.526524 CGCAAAACCGGCAAACTCAA 60.527 50.000 0.00 0.00 0.00 3.02
1481 1487 6.686679 TCGCGCAAATAAGATCAAAAACATAG 59.313 34.615 8.75 0.00 0.00 2.23
1493 1499 8.579006 AGATCAAAAACATAGCAACTGATTTCA 58.421 29.630 0.00 0.00 0.00 2.69
1565 1571 6.267699 TCTCACAAGACAGAGAAAGATTACCA 59.732 38.462 0.00 0.00 37.91 3.25
1953 1964 3.367910 GGTCAGAGCTTGTGGTAGAAGAG 60.368 52.174 0.00 0.00 0.00 2.85
1954 1965 3.508012 GTCAGAGCTTGTGGTAGAAGAGA 59.492 47.826 0.00 0.00 0.00 3.10
1955 1966 4.021894 GTCAGAGCTTGTGGTAGAAGAGAA 60.022 45.833 0.00 0.00 0.00 2.87
1956 1967 4.588951 TCAGAGCTTGTGGTAGAAGAGAAA 59.411 41.667 0.00 0.00 0.00 2.52
1957 1968 4.928615 CAGAGCTTGTGGTAGAAGAGAAAG 59.071 45.833 0.00 0.00 0.00 2.62
1958 1969 4.020662 AGAGCTTGTGGTAGAAGAGAAAGG 60.021 45.833 0.00 0.00 0.00 3.11
1959 1970 3.008485 AGCTTGTGGTAGAAGAGAAAGGG 59.992 47.826 0.00 0.00 0.00 3.95
1960 1971 3.339141 CTTGTGGTAGAAGAGAAAGGGC 58.661 50.000 0.00 0.00 0.00 5.19
1961 1972 1.628846 TGTGGTAGAAGAGAAAGGGCC 59.371 52.381 0.00 0.00 0.00 5.80
1962 1973 0.902531 TGGTAGAAGAGAAAGGGCCG 59.097 55.000 0.00 0.00 0.00 6.13
1963 1974 1.192428 GGTAGAAGAGAAAGGGCCGA 58.808 55.000 0.00 0.00 0.00 5.54
1964 1975 1.134759 GGTAGAAGAGAAAGGGCCGAC 60.135 57.143 0.00 0.00 0.00 4.79
1965 1976 0.815734 TAGAAGAGAAAGGGCCGACG 59.184 55.000 0.00 0.00 0.00 5.12
1966 1977 0.898789 AGAAGAGAAAGGGCCGACGA 60.899 55.000 0.00 0.00 0.00 4.20
1967 1978 0.736672 GAAGAGAAAGGGCCGACGAC 60.737 60.000 0.00 0.00 0.00 4.34
1968 1979 2.125633 GAGAAAGGGCCGACGACC 60.126 66.667 0.00 0.00 0.00 4.79
1975 1986 3.846180 GGCCGACGACCCATACTA 58.154 61.111 0.00 0.00 0.00 1.82
1976 1987 1.658673 GGCCGACGACCCATACTAG 59.341 63.158 0.00 0.00 0.00 2.57
1977 1988 0.820891 GGCCGACGACCCATACTAGA 60.821 60.000 0.00 0.00 0.00 2.43
1978 1989 0.592148 GCCGACGACCCATACTAGAG 59.408 60.000 0.00 0.00 0.00 2.43
1979 1990 0.592148 CCGACGACCCATACTAGAGC 59.408 60.000 0.00 0.00 0.00 4.09
1980 1991 1.306148 CGACGACCCATACTAGAGCA 58.694 55.000 0.00 0.00 0.00 4.26
1981 1992 1.880675 CGACGACCCATACTAGAGCAT 59.119 52.381 0.00 0.00 0.00 3.79
1982 1993 2.350868 CGACGACCCATACTAGAGCATG 60.351 54.545 0.00 0.00 0.00 4.06
1983 1994 1.341531 ACGACCCATACTAGAGCATGC 59.658 52.381 10.51 10.51 0.00 4.06
1984 1995 1.615883 CGACCCATACTAGAGCATGCT 59.384 52.381 22.92 22.92 0.00 3.79
1985 1996 2.352225 CGACCCATACTAGAGCATGCTC 60.352 54.545 35.57 35.57 43.03 4.26
1995 2006 2.091852 GAGCATGCTCTAGTATGGGC 57.908 55.000 35.26 10.02 38.36 5.36
1996 2007 1.622811 GAGCATGCTCTAGTATGGGCT 59.377 52.381 35.26 3.52 38.36 5.19
1997 2008 2.038295 GAGCATGCTCTAGTATGGGCTT 59.962 50.000 35.26 3.03 38.36 4.35
1998 2009 2.441001 AGCATGCTCTAGTATGGGCTTT 59.559 45.455 16.30 0.00 38.36 3.51
1999 2010 3.117738 AGCATGCTCTAGTATGGGCTTTT 60.118 43.478 16.30 0.00 38.36 2.27
2000 2011 4.103153 AGCATGCTCTAGTATGGGCTTTTA 59.897 41.667 16.30 0.00 38.36 1.52
2001 2012 4.821805 GCATGCTCTAGTATGGGCTTTTAA 59.178 41.667 11.37 0.00 38.36 1.52
2002 2013 5.049129 GCATGCTCTAGTATGGGCTTTTAAG 60.049 44.000 11.37 0.00 38.36 1.85
2003 2014 5.950544 TGCTCTAGTATGGGCTTTTAAGA 57.049 39.130 0.00 0.00 0.00 2.10
2004 2015 6.308015 TGCTCTAGTATGGGCTTTTAAGAA 57.692 37.500 0.00 0.00 0.00 2.52
2005 2016 6.349300 TGCTCTAGTATGGGCTTTTAAGAAG 58.651 40.000 0.00 0.00 0.00 2.85
2006 2017 6.156256 TGCTCTAGTATGGGCTTTTAAGAAGA 59.844 38.462 0.00 0.00 0.00 2.87
2007 2018 7.048512 GCTCTAGTATGGGCTTTTAAGAAGAA 58.951 38.462 0.00 0.00 0.00 2.52
2008 2019 7.553044 GCTCTAGTATGGGCTTTTAAGAAGAAA 59.447 37.037 0.00 0.00 0.00 2.52
2009 2020 9.620259 CTCTAGTATGGGCTTTTAAGAAGAAAT 57.380 33.333 0.00 0.00 0.00 2.17
2010 2021 9.975218 TCTAGTATGGGCTTTTAAGAAGAAATT 57.025 29.630 0.00 0.00 0.00 1.82
2017 2028 9.308000 TGGGCTTTTAAGAAGAAATTTAGATCA 57.692 29.630 0.00 0.00 0.00 2.92
2027 2038 9.994432 AGAAGAAATTTAGATCAATTTAGTGCG 57.006 29.630 4.27 0.00 36.64 5.34
2028 2039 9.226345 GAAGAAATTTAGATCAATTTAGTGCGG 57.774 33.333 4.27 0.00 36.64 5.69
2029 2040 7.196331 AGAAATTTAGATCAATTTAGTGCGGC 58.804 34.615 4.27 0.00 36.64 6.53
2030 2041 4.530094 TTTAGATCAATTTAGTGCGGCG 57.470 40.909 0.51 0.51 0.00 6.46
2031 2042 2.024176 AGATCAATTTAGTGCGGCGT 57.976 45.000 9.37 0.00 0.00 5.68
2032 2043 3.173668 AGATCAATTTAGTGCGGCGTA 57.826 42.857 9.37 0.00 0.00 4.42
2033 2044 3.123804 AGATCAATTTAGTGCGGCGTAG 58.876 45.455 9.37 0.00 0.00 3.51
2034 2045 2.658373 TCAATTTAGTGCGGCGTAGA 57.342 45.000 9.37 0.00 0.00 2.59
2035 2046 3.173668 TCAATTTAGTGCGGCGTAGAT 57.826 42.857 9.37 0.00 0.00 1.98
2036 2047 3.527533 TCAATTTAGTGCGGCGTAGATT 58.472 40.909 9.37 0.00 0.00 2.40
2037 2048 3.936453 TCAATTTAGTGCGGCGTAGATTT 59.064 39.130 9.37 0.00 0.00 2.17
2038 2049 5.110598 TCAATTTAGTGCGGCGTAGATTTA 58.889 37.500 9.37 0.00 0.00 1.40
2039 2050 5.005971 TCAATTTAGTGCGGCGTAGATTTAC 59.994 40.000 9.37 0.00 0.00 2.01
2040 2051 3.788333 TTAGTGCGGCGTAGATTTACT 57.212 42.857 9.37 0.00 0.00 2.24
2041 2052 4.898829 TTAGTGCGGCGTAGATTTACTA 57.101 40.909 9.37 0.00 0.00 1.82
2042 2053 3.351020 AGTGCGGCGTAGATTTACTAG 57.649 47.619 9.37 0.00 0.00 2.57
2043 2054 2.686915 AGTGCGGCGTAGATTTACTAGT 59.313 45.455 9.37 0.00 0.00 2.57
2044 2055 3.879295 AGTGCGGCGTAGATTTACTAGTA 59.121 43.478 9.37 0.00 0.00 1.82
2045 2056 4.518211 AGTGCGGCGTAGATTTACTAGTAT 59.482 41.667 9.37 0.00 0.00 2.12
2046 2057 5.009410 AGTGCGGCGTAGATTTACTAGTATT 59.991 40.000 9.37 0.00 0.00 1.89
2047 2058 5.116680 GTGCGGCGTAGATTTACTAGTATTG 59.883 44.000 9.37 0.00 0.00 1.90
2048 2059 5.008911 TGCGGCGTAGATTTACTAGTATTGA 59.991 40.000 9.37 0.00 0.00 2.57
2049 2060 6.091437 GCGGCGTAGATTTACTAGTATTGAT 58.909 40.000 9.37 0.00 0.00 2.57
2050 2061 6.033619 GCGGCGTAGATTTACTAGTATTGATG 59.966 42.308 9.37 0.00 0.00 3.07
2051 2062 6.527023 CGGCGTAGATTTACTAGTATTGATGG 59.473 42.308 2.79 0.00 0.00 3.51
2052 2063 6.310711 GGCGTAGATTTACTAGTATTGATGGC 59.689 42.308 2.79 3.04 0.00 4.40
2053 2064 6.866770 GCGTAGATTTACTAGTATTGATGGCA 59.133 38.462 2.79 0.00 0.00 4.92
2054 2065 7.148787 GCGTAGATTTACTAGTATTGATGGCAC 60.149 40.741 2.79 0.00 0.00 5.01
2055 2066 8.082852 CGTAGATTTACTAGTATTGATGGCACT 58.917 37.037 2.79 0.00 0.00 4.40
2059 2070 9.929180 GATTTACTAGTATTGATGGCACTATCA 57.071 33.333 2.79 0.00 35.38 2.15
2063 2074 8.438676 ACTAGTATTGATGGCACTATCAAAAC 57.561 34.615 12.58 0.00 46.63 2.43
2064 2075 8.046708 ACTAGTATTGATGGCACTATCAAAACA 58.953 33.333 12.58 0.65 46.63 2.83
2065 2076 7.886629 AGTATTGATGGCACTATCAAAACAT 57.113 32.000 12.58 0.78 46.63 2.71
2066 2077 7.934457 AGTATTGATGGCACTATCAAAACATC 58.066 34.615 12.58 0.00 46.63 3.06
2067 2078 7.776969 AGTATTGATGGCACTATCAAAACATCT 59.223 33.333 12.58 5.54 46.63 2.90
2068 2079 9.056005 GTATTGATGGCACTATCAAAACATCTA 57.944 33.333 12.58 0.00 46.63 1.98
2069 2080 8.701908 ATTGATGGCACTATCAAAACATCTAT 57.298 30.769 12.58 0.00 46.63 1.98
2070 2081 8.523915 TTGATGGCACTATCAAAACATCTATT 57.476 30.769 6.93 0.00 42.39 1.73
2071 2082 7.933396 TGATGGCACTATCAAAACATCTATTG 58.067 34.615 0.00 0.00 36.56 1.90
2072 2083 6.698008 TGGCACTATCAAAACATCTATTGG 57.302 37.500 0.00 0.00 0.00 3.16
2073 2084 6.422333 TGGCACTATCAAAACATCTATTGGA 58.578 36.000 0.00 0.00 0.00 3.53
2074 2085 6.889177 TGGCACTATCAAAACATCTATTGGAA 59.111 34.615 0.00 0.00 0.00 3.53
2075 2086 7.560991 TGGCACTATCAAAACATCTATTGGAAT 59.439 33.333 0.00 0.00 0.00 3.01
2076 2087 8.416329 GGCACTATCAAAACATCTATTGGAATT 58.584 33.333 0.00 0.00 0.00 2.17
2077 2088 9.241317 GCACTATCAAAACATCTATTGGAATTG 57.759 33.333 0.00 0.00 0.00 2.32
2083 2094 9.699410 TCAAAACATCTATTGGAATTGATAGGT 57.301 29.630 0.00 0.00 31.32 3.08
2084 2095 9.956720 CAAAACATCTATTGGAATTGATAGGTC 57.043 33.333 0.00 0.00 31.32 3.85
2085 2096 9.699410 AAAACATCTATTGGAATTGATAGGTCA 57.301 29.630 0.00 0.00 31.32 4.02
2086 2097 8.682936 AACATCTATTGGAATTGATAGGTCAC 57.317 34.615 0.00 0.00 33.11 3.67
2087 2098 7.227156 ACATCTATTGGAATTGATAGGTCACC 58.773 38.462 0.00 0.00 33.11 4.02
2088 2099 6.187727 TCTATTGGAATTGATAGGTCACCC 57.812 41.667 0.00 0.00 33.11 4.61
2089 2100 3.275617 TTGGAATTGATAGGTCACCCG 57.724 47.619 0.00 0.00 33.11 5.28
2090 2101 1.134220 TGGAATTGATAGGTCACCCGC 60.134 52.381 0.00 0.00 33.11 6.13
2091 2102 1.134220 GGAATTGATAGGTCACCCGCA 60.134 52.381 0.00 0.00 33.11 5.69
2092 2103 1.940613 GAATTGATAGGTCACCCGCAC 59.059 52.381 0.00 0.00 33.11 5.34
2093 2104 0.908910 ATTGATAGGTCACCCGCACA 59.091 50.000 0.00 0.00 33.11 4.57
2094 2105 0.687920 TTGATAGGTCACCCGCACAA 59.312 50.000 0.00 0.00 33.11 3.33
2095 2106 0.036765 TGATAGGTCACCCGCACAAC 60.037 55.000 0.00 0.00 35.12 3.32
2096 2107 1.079405 ATAGGTCACCCGCACAACG 60.079 57.895 0.00 0.00 43.15 4.10
2097 2108 1.823169 ATAGGTCACCCGCACAACGT 61.823 55.000 0.00 0.00 41.42 3.99
2098 2109 2.030490 TAGGTCACCCGCACAACGTT 62.030 55.000 0.00 0.00 41.42 3.99
2099 2110 2.474612 GGTCACCCGCACAACGTTT 61.475 57.895 0.00 0.00 41.42 3.60
2100 2111 1.159098 GGTCACCCGCACAACGTTTA 61.159 55.000 0.00 0.00 41.42 2.01
2101 2112 0.041926 GTCACCCGCACAACGTTTAC 60.042 55.000 0.00 0.00 41.42 2.01
2102 2113 1.083273 CACCCGCACAACGTTTACG 60.083 57.895 0.00 2.42 46.33 3.18
2103 2114 1.227205 ACCCGCACAACGTTTACGA 60.227 52.632 9.53 0.00 43.02 3.43
2104 2115 1.216941 ACCCGCACAACGTTTACGAG 61.217 55.000 9.53 5.38 43.02 4.18
2105 2116 1.216941 CCCGCACAACGTTTACGAGT 61.217 55.000 9.53 4.48 43.02 4.18
2106 2117 0.578211 CCGCACAACGTTTACGAGTT 59.422 50.000 9.53 0.00 43.02 3.01
2114 2125 5.431650 CAACGTTTACGAGTTGGTAGATC 57.568 43.478 9.53 0.00 42.72 2.75
2115 2126 5.159209 CAACGTTTACGAGTTGGTAGATCT 58.841 41.667 9.53 0.00 42.72 2.75
2116 2127 5.382618 ACGTTTACGAGTTGGTAGATCTT 57.617 39.130 9.53 0.00 43.02 2.40
2117 2128 5.159209 ACGTTTACGAGTTGGTAGATCTTG 58.841 41.667 9.53 0.00 43.02 3.02
2118 2129 5.048504 ACGTTTACGAGTTGGTAGATCTTGA 60.049 40.000 9.53 0.00 43.02 3.02
2119 2130 5.512082 CGTTTACGAGTTGGTAGATCTTGAG 59.488 44.000 0.00 0.00 43.02 3.02
2120 2131 5.578005 TTACGAGTTGGTAGATCTTGAGG 57.422 43.478 0.00 0.00 0.00 3.86
2121 2132 3.698289 ACGAGTTGGTAGATCTTGAGGA 58.302 45.455 0.00 0.00 0.00 3.71
2122 2133 4.087182 ACGAGTTGGTAGATCTTGAGGAA 58.913 43.478 0.00 0.00 0.00 3.36
2123 2134 4.158764 ACGAGTTGGTAGATCTTGAGGAAG 59.841 45.833 0.00 0.00 0.00 3.46
2124 2135 4.438148 GAGTTGGTAGATCTTGAGGAAGC 58.562 47.826 0.00 0.00 0.00 3.86
2125 2136 4.100373 AGTTGGTAGATCTTGAGGAAGCT 58.900 43.478 0.00 0.00 0.00 3.74
2126 2137 4.161377 AGTTGGTAGATCTTGAGGAAGCTC 59.839 45.833 0.00 0.00 0.00 4.09
2127 2138 3.713003 TGGTAGATCTTGAGGAAGCTCA 58.287 45.455 0.00 0.00 28.32 4.26
2128 2139 3.449018 TGGTAGATCTTGAGGAAGCTCAC 59.551 47.826 0.00 0.00 32.47 3.51
2129 2140 3.704061 GGTAGATCTTGAGGAAGCTCACT 59.296 47.826 0.00 0.00 32.47 3.41
2130 2141 4.890581 GGTAGATCTTGAGGAAGCTCACTA 59.109 45.833 0.00 0.00 32.47 2.74
2131 2142 5.538433 GGTAGATCTTGAGGAAGCTCACTAT 59.462 44.000 0.00 0.00 32.47 2.12
2132 2143 6.041523 GGTAGATCTTGAGGAAGCTCACTATT 59.958 42.308 0.00 0.00 32.47 1.73
2133 2144 6.160576 AGATCTTGAGGAAGCTCACTATTC 57.839 41.667 0.00 0.00 32.47 1.75
2134 2145 5.898972 AGATCTTGAGGAAGCTCACTATTCT 59.101 40.000 0.00 0.00 32.47 2.40
2135 2146 6.383726 AGATCTTGAGGAAGCTCACTATTCTT 59.616 38.462 0.00 0.00 32.47 2.52
2136 2147 7.563188 AGATCTTGAGGAAGCTCACTATTCTTA 59.437 37.037 0.00 0.00 32.47 2.10
2137 2148 7.667575 TCTTGAGGAAGCTCACTATTCTTAT 57.332 36.000 0.00 0.00 32.47 1.73
2138 2149 8.768501 TCTTGAGGAAGCTCACTATTCTTATA 57.231 34.615 0.00 0.00 32.47 0.98
2139 2150 9.373450 TCTTGAGGAAGCTCACTATTCTTATAT 57.627 33.333 0.00 0.00 32.47 0.86
2140 2151 9.995003 CTTGAGGAAGCTCACTATTCTTATATT 57.005 33.333 0.00 0.00 32.47 1.28
2165 2176 9.917129 TTAGTAAGATGTCAACGAATGTAAGAA 57.083 29.630 0.00 0.00 0.00 2.52
2166 2177 8.467402 AGTAAGATGTCAACGAATGTAAGAAG 57.533 34.615 0.00 0.00 0.00 2.85
2167 2178 8.304596 AGTAAGATGTCAACGAATGTAAGAAGA 58.695 33.333 0.00 0.00 0.00 2.87
2168 2179 7.588143 AAGATGTCAACGAATGTAAGAAGAG 57.412 36.000 0.00 0.00 0.00 2.85
2169 2180 6.692486 AGATGTCAACGAATGTAAGAAGAGT 58.308 36.000 0.00 0.00 0.00 3.24
2170 2181 6.587990 AGATGTCAACGAATGTAAGAAGAGTG 59.412 38.462 0.00 0.00 0.00 3.51
2171 2182 5.597806 TGTCAACGAATGTAAGAAGAGTGT 58.402 37.500 0.00 0.00 0.00 3.55
2172 2183 6.741109 TGTCAACGAATGTAAGAAGAGTGTA 58.259 36.000 0.00 0.00 0.00 2.90
2173 2184 6.639686 TGTCAACGAATGTAAGAAGAGTGTAC 59.360 38.462 0.00 0.00 0.00 2.90
2174 2185 6.639686 GTCAACGAATGTAAGAAGAGTGTACA 59.360 38.462 0.00 0.00 32.58 2.90
2175 2186 7.168637 GTCAACGAATGTAAGAAGAGTGTACAA 59.831 37.037 0.00 0.00 31.85 2.41
2176 2187 7.381408 TCAACGAATGTAAGAAGAGTGTACAAG 59.619 37.037 0.00 0.00 31.85 3.16
2177 2188 6.978338 ACGAATGTAAGAAGAGTGTACAAGA 58.022 36.000 0.00 0.00 31.85 3.02
2178 2189 7.603651 ACGAATGTAAGAAGAGTGTACAAGAT 58.396 34.615 0.00 0.00 31.85 2.40
2179 2190 7.755822 ACGAATGTAAGAAGAGTGTACAAGATC 59.244 37.037 0.00 0.00 31.85 2.75
2180 2191 7.044641 CGAATGTAAGAAGAGTGTACAAGATCG 60.045 40.741 0.00 0.00 31.85 3.69
2181 2192 6.812879 TGTAAGAAGAGTGTACAAGATCGA 57.187 37.500 0.00 0.00 0.00 3.59
2182 2193 6.609533 TGTAAGAAGAGTGTACAAGATCGAC 58.390 40.000 0.00 0.00 0.00 4.20
2183 2194 5.968528 AAGAAGAGTGTACAAGATCGACT 57.031 39.130 0.00 0.00 0.00 4.18
2184 2195 5.968528 AGAAGAGTGTACAAGATCGACTT 57.031 39.130 0.00 0.00 39.70 3.01
2185 2196 5.945155 AGAAGAGTGTACAAGATCGACTTC 58.055 41.667 0.00 6.61 36.61 3.01
2186 2197 5.708230 AGAAGAGTGTACAAGATCGACTTCT 59.292 40.000 0.00 8.56 36.61 2.85
2187 2198 5.554822 AGAGTGTACAAGATCGACTTCTC 57.445 43.478 0.00 0.00 36.61 2.87
2188 2199 5.004448 AGAGTGTACAAGATCGACTTCTCA 58.996 41.667 0.00 0.00 36.61 3.27
2189 2200 5.650266 AGAGTGTACAAGATCGACTTCTCAT 59.350 40.000 0.00 0.00 36.61 2.90
2190 2201 6.151985 AGAGTGTACAAGATCGACTTCTCATT 59.848 38.462 0.00 0.00 36.61 2.57
2191 2202 7.337184 AGAGTGTACAAGATCGACTTCTCATTA 59.663 37.037 0.00 0.00 36.61 1.90
2192 2203 8.001881 AGTGTACAAGATCGACTTCTCATTAT 57.998 34.615 0.00 0.00 36.61 1.28
2193 2204 7.918033 AGTGTACAAGATCGACTTCTCATTATG 59.082 37.037 0.00 0.00 36.61 1.90
2194 2205 7.168302 GTGTACAAGATCGACTTCTCATTATGG 59.832 40.741 0.00 0.00 36.61 2.74
2195 2206 6.471233 ACAAGATCGACTTCTCATTATGGA 57.529 37.500 0.00 0.00 36.61 3.41
2196 2207 6.878317 ACAAGATCGACTTCTCATTATGGAA 58.122 36.000 0.00 0.00 36.61 3.53
2197 2208 7.504403 ACAAGATCGACTTCTCATTATGGAAT 58.496 34.615 0.00 0.00 36.61 3.01
2198 2209 7.440556 ACAAGATCGACTTCTCATTATGGAATG 59.559 37.037 0.00 0.00 39.26 2.67
2199 2210 7.060383 AGATCGACTTCTCATTATGGAATGT 57.940 36.000 0.00 0.00 42.71 2.71
2200 2211 6.927936 AGATCGACTTCTCATTATGGAATGTG 59.072 38.462 0.00 0.00 42.71 3.21
2201 2212 6.220726 TCGACTTCTCATTATGGAATGTGA 57.779 37.500 0.00 0.00 42.71 3.58
2202 2213 6.639563 TCGACTTCTCATTATGGAATGTGAA 58.360 36.000 12.17 12.17 46.04 3.18
2217 2228 8.134202 TGGAATGTGAAGAAGTATACTCTTCA 57.866 34.615 26.70 26.70 44.96 3.02
2218 2229 8.253810 TGGAATGTGAAGAAGTATACTCTTCAG 58.746 37.037 28.83 0.00 46.85 3.02
2219 2230 8.470805 GGAATGTGAAGAAGTATACTCTTCAGA 58.529 37.037 28.83 28.07 46.85 3.27
2220 2231 9.862371 GAATGTGAAGAAGTATACTCTTCAGAA 57.138 33.333 28.83 23.77 46.85 3.02
2222 2233 9.868277 ATGTGAAGAAGTATACTCTTCAGAAAG 57.132 33.333 28.83 0.00 46.85 2.62
2223 2234 8.861086 TGTGAAGAAGTATACTCTTCAGAAAGT 58.139 33.333 28.83 6.94 46.85 2.66
2224 2235 9.699703 GTGAAGAAGTATACTCTTCAGAAAGTT 57.300 33.333 28.83 9.56 46.85 2.66
2225 2236 9.698309 TGAAGAAGTATACTCTTCAGAAAGTTG 57.302 33.333 26.70 0.00 43.11 3.16
2226 2237 9.699703 GAAGAAGTATACTCTTCAGAAAGTTGT 57.300 33.333 24.81 3.07 44.18 3.32
2227 2238 9.482627 AAGAAGTATACTCTTCAGAAAGTTGTG 57.517 33.333 5.70 0.00 44.18 3.33
2228 2239 8.643324 AGAAGTATACTCTTCAGAAAGTTGTGT 58.357 33.333 5.70 0.00 44.18 3.72
2229 2240 9.262358 GAAGTATACTCTTCAGAAAGTTGTGTT 57.738 33.333 5.70 0.00 42.14 3.32
2233 2244 6.364945 ACTCTTCAGAAAGTTGTGTTAAGC 57.635 37.500 0.00 0.00 33.95 3.09
2234 2245 6.116126 ACTCTTCAGAAAGTTGTGTTAAGCT 58.884 36.000 0.00 0.00 33.95 3.74
2235 2246 7.272978 ACTCTTCAGAAAGTTGTGTTAAGCTA 58.727 34.615 0.00 0.00 33.95 3.32
2236 2247 7.934120 ACTCTTCAGAAAGTTGTGTTAAGCTAT 59.066 33.333 0.00 0.00 33.95 2.97
2237 2248 8.087982 TCTTCAGAAAGTTGTGTTAAGCTATG 57.912 34.615 0.00 0.00 33.95 2.23
2238 2249 7.715249 TCTTCAGAAAGTTGTGTTAAGCTATGT 59.285 33.333 0.00 0.00 33.95 2.29
2239 2250 8.896320 TTCAGAAAGTTGTGTTAAGCTATGTA 57.104 30.769 0.00 0.00 0.00 2.29
2240 2251 8.534333 TCAGAAAGTTGTGTTAAGCTATGTAG 57.466 34.615 0.00 0.00 0.00 2.74
2241 2252 8.364894 TCAGAAAGTTGTGTTAAGCTATGTAGA 58.635 33.333 0.00 0.00 0.00 2.59
2242 2253 9.155975 CAGAAAGTTGTGTTAAGCTATGTAGAT 57.844 33.333 0.00 0.00 0.00 1.98
2243 2254 9.155975 AGAAAGTTGTGTTAAGCTATGTAGATG 57.844 33.333 0.00 0.00 0.00 2.90
2244 2255 7.849804 AAGTTGTGTTAAGCTATGTAGATGG 57.150 36.000 0.00 0.00 0.00 3.51
2245 2256 6.349300 AGTTGTGTTAAGCTATGTAGATGGG 58.651 40.000 0.00 0.00 0.00 4.00
2246 2257 5.950544 TGTGTTAAGCTATGTAGATGGGT 57.049 39.130 0.00 0.00 0.00 4.51
2247 2258 6.308015 TGTGTTAAGCTATGTAGATGGGTT 57.692 37.500 5.97 5.97 35.26 4.11
2248 2259 6.112734 TGTGTTAAGCTATGTAGATGGGTTG 58.887 40.000 10.37 0.00 33.35 3.77
2249 2260 6.070481 TGTGTTAAGCTATGTAGATGGGTTGA 60.070 38.462 10.37 0.24 33.35 3.18
2250 2261 6.480320 GTGTTAAGCTATGTAGATGGGTTGAG 59.520 42.308 10.37 0.00 33.35 3.02
2251 2262 6.156256 TGTTAAGCTATGTAGATGGGTTGAGT 59.844 38.462 10.37 0.00 33.35 3.41
2252 2263 7.343574 TGTTAAGCTATGTAGATGGGTTGAGTA 59.656 37.037 10.37 0.00 33.35 2.59
2253 2264 6.412362 AAGCTATGTAGATGGGTTGAGTAG 57.588 41.667 0.00 0.00 30.34 2.57
2254 2265 4.282195 AGCTATGTAGATGGGTTGAGTAGC 59.718 45.833 0.00 0.00 33.95 3.58
2255 2266 4.039245 GCTATGTAGATGGGTTGAGTAGCA 59.961 45.833 0.00 0.00 33.94 3.49
2256 2267 5.279708 GCTATGTAGATGGGTTGAGTAGCAT 60.280 44.000 0.00 0.00 33.94 3.79
2257 2268 4.406648 TGTAGATGGGTTGAGTAGCATG 57.593 45.455 0.00 0.00 0.00 4.06
2258 2269 3.134623 TGTAGATGGGTTGAGTAGCATGG 59.865 47.826 0.00 0.00 0.00 3.66
2259 2270 2.481441 AGATGGGTTGAGTAGCATGGA 58.519 47.619 0.00 0.00 0.00 3.41
2260 2271 2.846206 AGATGGGTTGAGTAGCATGGAA 59.154 45.455 0.00 0.00 0.00 3.53
2261 2272 2.787473 TGGGTTGAGTAGCATGGAAG 57.213 50.000 0.00 0.00 0.00 3.46
2262 2273 2.265367 TGGGTTGAGTAGCATGGAAGA 58.735 47.619 0.00 0.00 0.00 2.87
2263 2274 2.642311 TGGGTTGAGTAGCATGGAAGAA 59.358 45.455 0.00 0.00 0.00 2.52
2264 2275 3.274288 GGGTTGAGTAGCATGGAAGAAG 58.726 50.000 0.00 0.00 0.00 2.85
2265 2276 2.680339 GGTTGAGTAGCATGGAAGAAGC 59.320 50.000 0.00 0.00 0.00 3.86
2266 2277 2.299993 TGAGTAGCATGGAAGAAGCG 57.700 50.000 0.00 0.00 0.00 4.68
2267 2278 0.933796 GAGTAGCATGGAAGAAGCGC 59.066 55.000 0.00 0.00 0.00 5.92
2268 2279 0.539051 AGTAGCATGGAAGAAGCGCT 59.461 50.000 2.64 2.64 36.72 5.92
2269 2280 0.654683 GTAGCATGGAAGAAGCGCTG 59.345 55.000 12.58 0.00 34.18 5.18
2270 2281 0.536724 TAGCATGGAAGAAGCGCTGA 59.463 50.000 12.58 0.00 34.18 4.26
2271 2282 0.107312 AGCATGGAAGAAGCGCTGAT 60.107 50.000 12.58 0.00 0.00 2.90
2272 2283 0.307146 GCATGGAAGAAGCGCTGATC 59.693 55.000 12.58 5.66 0.00 2.92
2273 2284 0.580578 CATGGAAGAAGCGCTGATCG 59.419 55.000 12.58 0.00 42.12 3.69
2274 2285 0.531532 ATGGAAGAAGCGCTGATCGG 60.532 55.000 12.58 0.00 38.94 4.18
2275 2286 1.141881 GGAAGAAGCGCTGATCGGA 59.858 57.895 12.58 0.00 38.94 4.55
2276 2287 0.460284 GGAAGAAGCGCTGATCGGAA 60.460 55.000 12.58 0.00 38.94 4.30
2277 2288 1.576356 GAAGAAGCGCTGATCGGAAT 58.424 50.000 12.58 0.00 38.94 3.01
2278 2289 1.260033 GAAGAAGCGCTGATCGGAATG 59.740 52.381 12.58 0.00 38.94 2.67
2279 2290 0.176680 AGAAGCGCTGATCGGAATGT 59.823 50.000 12.58 0.00 38.94 2.71
2280 2291 1.009829 GAAGCGCTGATCGGAATGTT 58.990 50.000 12.58 0.00 38.94 2.71
2281 2292 0.729116 AAGCGCTGATCGGAATGTTG 59.271 50.000 12.58 0.00 38.94 3.33
2282 2293 0.391661 AGCGCTGATCGGAATGTTGT 60.392 50.000 10.39 0.00 38.94 3.32
2283 2294 0.447801 GCGCTGATCGGAATGTTGTT 59.552 50.000 5.48 0.00 38.94 2.83
2284 2295 1.663643 GCGCTGATCGGAATGTTGTTA 59.336 47.619 5.48 0.00 38.94 2.41
2285 2296 2.095213 GCGCTGATCGGAATGTTGTTAA 59.905 45.455 5.48 0.00 38.94 2.01
2286 2297 3.425625 GCGCTGATCGGAATGTTGTTAAA 60.426 43.478 5.48 0.00 38.94 1.52
2287 2298 4.088648 CGCTGATCGGAATGTTGTTAAAC 58.911 43.478 5.48 0.00 33.96 2.01
2288 2299 4.377943 CGCTGATCGGAATGTTGTTAAACA 60.378 41.667 5.48 0.00 41.59 2.83
2289 2300 5.841440 CGCTGATCGGAATGTTGTTAAACAA 60.841 40.000 5.48 0.00 41.11 2.83
2290 2301 7.795223 CGCTGATCGGAATGTTGTTAAACAAC 61.795 42.308 5.48 10.35 45.13 3.32
2304 2315 8.763984 TTGTTAAACAACCCCTTTTACTATCA 57.236 30.769 0.00 0.00 32.34 2.15
2305 2316 8.398878 TGTTAAACAACCCCTTTTACTATCAG 57.601 34.615 0.00 0.00 0.00 2.90
2306 2317 7.449086 TGTTAAACAACCCCTTTTACTATCAGG 59.551 37.037 0.00 0.00 0.00 3.86
2307 2318 5.853572 AACAACCCCTTTTACTATCAGGA 57.146 39.130 0.00 0.00 0.00 3.86
2308 2319 6.402981 AACAACCCCTTTTACTATCAGGAT 57.597 37.500 0.00 0.00 0.00 3.24
2309 2320 7.519347 AACAACCCCTTTTACTATCAGGATA 57.481 36.000 0.00 0.00 0.00 2.59
2310 2321 7.519347 ACAACCCCTTTTACTATCAGGATAA 57.481 36.000 0.00 0.00 0.00 1.75
2311 2322 7.935405 ACAACCCCTTTTACTATCAGGATAAA 58.065 34.615 0.00 0.00 0.00 1.40
2312 2323 8.053355 ACAACCCCTTTTACTATCAGGATAAAG 58.947 37.037 0.00 0.00 0.00 1.85
2313 2324 7.150447 ACCCCTTTTACTATCAGGATAAAGG 57.850 40.000 11.71 11.71 0.00 3.11
2314 2325 6.102762 ACCCCTTTTACTATCAGGATAAAGGG 59.897 42.308 22.48 22.48 35.73 3.95
2315 2326 6.102762 CCCCTTTTACTATCAGGATAAAGGGT 59.897 42.308 24.96 10.11 34.72 4.34
2316 2327 6.998673 CCCTTTTACTATCAGGATAAAGGGTG 59.001 42.308 21.74 7.27 34.72 4.61
2317 2328 6.998673 CCTTTTACTATCAGGATAAAGGGTGG 59.001 42.308 11.14 0.00 32.90 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.779506 AGAACGAATCAAACCCCTGTC 58.220 47.619 0.00 0.00 0.00 3.51
18 19 2.951229 AGAACGAATCAAACCCCTGT 57.049 45.000 0.00 0.00 0.00 4.00
19 20 3.568007 TCAAAGAACGAATCAAACCCCTG 59.432 43.478 0.00 0.00 0.00 4.45
144 145 5.045140 AGGAGAGATACTGGGCTCTAGATAC 60.045 48.000 0.00 0.00 41.33 2.24
159 160 2.025226 AGGGTGTCGTTCAGGAGAGATA 60.025 50.000 0.00 0.00 0.00 1.98
179 180 1.476085 CCACCAGTAGAGTCTGCAGAG 59.524 57.143 18.89 5.13 34.47 3.35
207 208 3.202906 GCACATATTTACCTTCGCCTCA 58.797 45.455 0.00 0.00 0.00 3.86
215 216 7.168219 ACCGATATGAATGCACATATTTACCT 58.832 34.615 10.27 0.00 41.60 3.08
303 304 5.763204 ACGAATGTTCACTTCCACTAATGTT 59.237 36.000 0.00 0.00 0.00 2.71
317 318 5.411053 TGACAATGAATGCTACGAATGTTCA 59.589 36.000 0.00 0.00 33.82 3.18
572 574 5.014123 AGAGTTTGGGTTTGGATCATAGACA 59.986 40.000 0.00 0.00 0.00 3.41
577 579 3.334881 AGGAGAGTTTGGGTTTGGATCAT 59.665 43.478 0.00 0.00 0.00 2.45
813 815 8.945193 TGGTTTGTATATCTATCTTAGCCCTTT 58.055 33.333 0.00 0.00 0.00 3.11
1012 1015 3.927555 AGGCAAATCCTTCGTTCGA 57.072 47.368 0.00 0.00 44.75 3.71
1148 1154 4.537135 GGATGATATCCGCTTGGTCTTA 57.463 45.455 0.00 0.00 40.13 2.10
1163 1169 1.411977 CTGAGTCTTCTGCGGGATGAT 59.588 52.381 0.00 0.00 32.09 2.45
1170 1176 0.884514 TCCACTCTGAGTCTTCTGCG 59.115 55.000 7.49 0.00 0.00 5.18
1186 1192 3.848377 AGCCATGCCATTAGATAGATCCA 59.152 43.478 0.00 0.00 0.00 3.41
1326 1332 9.290988 TCACTAAGAACATTTTAGCCATTAACA 57.709 29.630 0.00 0.00 32.58 2.41
1381 1387 2.910688 TTCACTTTCAGAGACCGCTT 57.089 45.000 0.00 0.00 0.00 4.68
1481 1487 5.865552 ACATGCATTAAGTGAAATCAGTTGC 59.134 36.000 12.61 9.35 39.62 4.17
1493 1499 1.094785 GCGGGTGACATGCATTAAGT 58.905 50.000 0.00 0.00 33.85 2.24
1565 1571 7.863722 TCAAATTGGATTGGATTGGATGAATT 58.136 30.769 0.00 0.00 0.00 2.17
1662 1673 4.045207 ACCCTGATCTGGATAGATAGCTCA 59.955 45.833 19.59 0.00 43.63 4.26
1953 1964 1.963464 TATGGGTCGTCGGCCCTTTC 61.963 60.000 33.71 9.70 46.22 2.62
1954 1965 1.991167 TATGGGTCGTCGGCCCTTT 60.991 57.895 33.71 23.24 46.22 3.11
1955 1966 2.364579 TATGGGTCGTCGGCCCTT 60.365 61.111 33.71 29.11 46.22 3.95
1956 1967 2.288642 TAGTATGGGTCGTCGGCCCT 62.289 60.000 33.71 21.57 46.22 5.19
1957 1968 1.803366 CTAGTATGGGTCGTCGGCCC 61.803 65.000 28.52 28.52 46.26 5.80
1958 1969 0.820891 TCTAGTATGGGTCGTCGGCC 60.821 60.000 7.54 7.54 0.00 6.13
1959 1970 0.592148 CTCTAGTATGGGTCGTCGGC 59.408 60.000 0.00 0.00 0.00 5.54
1960 1971 0.592148 GCTCTAGTATGGGTCGTCGG 59.408 60.000 0.00 0.00 0.00 4.79
1961 1972 1.306148 TGCTCTAGTATGGGTCGTCG 58.694 55.000 0.00 0.00 0.00 5.12
1962 1973 2.608261 GCATGCTCTAGTATGGGTCGTC 60.608 54.545 11.37 0.00 38.36 4.20
1963 1974 1.341531 GCATGCTCTAGTATGGGTCGT 59.658 52.381 11.37 0.00 38.36 4.34
1964 1975 1.615883 AGCATGCTCTAGTATGGGTCG 59.384 52.381 16.30 0.00 38.36 4.79
1965 1976 3.311486 GAGCATGCTCTAGTATGGGTC 57.689 52.381 35.26 9.74 38.36 4.46
1976 1987 1.622811 AGCCCATACTAGAGCATGCTC 59.377 52.381 35.57 35.57 43.03 4.26
1977 1988 1.727062 AGCCCATACTAGAGCATGCT 58.273 50.000 22.92 22.92 0.00 3.79
1978 1989 2.557920 AAGCCCATACTAGAGCATGC 57.442 50.000 10.51 10.51 0.00 4.06
1979 1990 6.291377 TCTTAAAAGCCCATACTAGAGCATG 58.709 40.000 0.00 0.00 0.00 4.06
1980 1991 6.500589 TCTTAAAAGCCCATACTAGAGCAT 57.499 37.500 0.00 0.00 0.00 3.79
1981 1992 5.950544 TCTTAAAAGCCCATACTAGAGCA 57.049 39.130 0.00 0.00 0.00 4.26
1982 1993 6.583562 TCTTCTTAAAAGCCCATACTAGAGC 58.416 40.000 0.00 0.00 0.00 4.09
1983 1994 9.620259 ATTTCTTCTTAAAAGCCCATACTAGAG 57.380 33.333 0.00 0.00 0.00 2.43
1984 1995 9.975218 AATTTCTTCTTAAAAGCCCATACTAGA 57.025 29.630 0.00 0.00 0.00 2.43
1991 2002 9.308000 TGATCTAAATTTCTTCTTAAAAGCCCA 57.692 29.630 0.00 0.00 0.00 5.36
2001 2012 9.994432 CGCACTAAATTGATCTAAATTTCTTCT 57.006 29.630 6.94 0.00 39.73 2.85
2002 2013 9.226345 CCGCACTAAATTGATCTAAATTTCTTC 57.774 33.333 6.94 0.00 39.73 2.87
2003 2014 7.702348 GCCGCACTAAATTGATCTAAATTTCTT 59.298 33.333 6.94 0.00 39.73 2.52
2004 2015 7.196331 GCCGCACTAAATTGATCTAAATTTCT 58.804 34.615 6.94 0.00 39.73 2.52
2005 2016 6.140737 CGCCGCACTAAATTGATCTAAATTTC 59.859 38.462 6.94 0.00 39.73 2.17
2006 2017 5.971202 CGCCGCACTAAATTGATCTAAATTT 59.029 36.000 8.36 8.36 41.45 1.82
2007 2018 5.065988 ACGCCGCACTAAATTGATCTAAATT 59.934 36.000 0.00 0.00 0.00 1.82
2008 2019 4.574828 ACGCCGCACTAAATTGATCTAAAT 59.425 37.500 0.00 0.00 0.00 1.40
2009 2020 3.936453 ACGCCGCACTAAATTGATCTAAA 59.064 39.130 0.00 0.00 0.00 1.85
2010 2021 3.527533 ACGCCGCACTAAATTGATCTAA 58.472 40.909 0.00 0.00 0.00 2.10
2011 2022 3.173668 ACGCCGCACTAAATTGATCTA 57.826 42.857 0.00 0.00 0.00 1.98
2012 2023 2.024176 ACGCCGCACTAAATTGATCT 57.976 45.000 0.00 0.00 0.00 2.75
2013 2024 3.120792 TCTACGCCGCACTAAATTGATC 58.879 45.455 0.00 0.00 0.00 2.92
2014 2025 3.173668 TCTACGCCGCACTAAATTGAT 57.826 42.857 0.00 0.00 0.00 2.57
2015 2026 2.658373 TCTACGCCGCACTAAATTGA 57.342 45.000 0.00 0.00 0.00 2.57
2016 2027 3.944422 AATCTACGCCGCACTAAATTG 57.056 42.857 0.00 0.00 0.00 2.32
2017 2028 5.114081 AGTAAATCTACGCCGCACTAAATT 58.886 37.500 0.00 0.00 32.87 1.82
2018 2029 4.690122 AGTAAATCTACGCCGCACTAAAT 58.310 39.130 0.00 0.00 32.87 1.40
2019 2030 4.114058 AGTAAATCTACGCCGCACTAAA 57.886 40.909 0.00 0.00 32.87 1.85
2020 2031 3.788333 AGTAAATCTACGCCGCACTAA 57.212 42.857 0.00 0.00 32.87 2.24
2021 2032 3.879295 ACTAGTAAATCTACGCCGCACTA 59.121 43.478 0.00 0.00 32.87 2.74
2022 2033 2.686915 ACTAGTAAATCTACGCCGCACT 59.313 45.455 0.00 0.00 32.87 4.40
2023 2034 3.075866 ACTAGTAAATCTACGCCGCAC 57.924 47.619 0.00 0.00 32.87 5.34
2024 2035 5.008911 TCAATACTAGTAAATCTACGCCGCA 59.991 40.000 6.70 0.00 32.87 5.69
2025 2036 5.455392 TCAATACTAGTAAATCTACGCCGC 58.545 41.667 6.70 0.00 32.87 6.53
2026 2037 6.527023 CCATCAATACTAGTAAATCTACGCCG 59.473 42.308 6.70 0.00 32.87 6.46
2027 2038 6.310711 GCCATCAATACTAGTAAATCTACGCC 59.689 42.308 6.70 0.00 32.87 5.68
2028 2039 6.866770 TGCCATCAATACTAGTAAATCTACGC 59.133 38.462 6.70 4.70 32.87 4.42
2029 2040 8.082852 AGTGCCATCAATACTAGTAAATCTACG 58.917 37.037 6.70 0.00 32.87 3.51
2033 2044 9.929180 TGATAGTGCCATCAATACTAGTAAATC 57.071 33.333 6.70 0.00 32.01 2.17
2037 2048 9.542462 GTTTTGATAGTGCCATCAATACTAGTA 57.458 33.333 4.77 4.77 42.83 1.82
2038 2049 8.046708 TGTTTTGATAGTGCCATCAATACTAGT 58.953 33.333 18.23 0.00 42.83 2.57
2039 2050 8.437360 TGTTTTGATAGTGCCATCAATACTAG 57.563 34.615 18.23 0.00 42.83 2.57
2040 2051 8.978874 ATGTTTTGATAGTGCCATCAATACTA 57.021 30.769 18.23 4.78 42.83 1.82
2041 2052 7.776969 AGATGTTTTGATAGTGCCATCAATACT 59.223 33.333 18.23 10.08 42.83 2.12
2042 2053 7.934457 AGATGTTTTGATAGTGCCATCAATAC 58.066 34.615 14.11 14.11 42.83 1.89
2043 2054 9.797642 ATAGATGTTTTGATAGTGCCATCAATA 57.202 29.630 6.38 0.85 42.83 1.90
2044 2055 8.701908 ATAGATGTTTTGATAGTGCCATCAAT 57.298 30.769 6.38 0.00 42.83 2.57
2045 2056 8.407832 CAATAGATGTTTTGATAGTGCCATCAA 58.592 33.333 0.00 2.35 41.90 2.57
2046 2057 7.013559 CCAATAGATGTTTTGATAGTGCCATCA 59.986 37.037 0.00 0.00 32.98 3.07
2047 2058 7.229306 TCCAATAGATGTTTTGATAGTGCCATC 59.771 37.037 0.00 0.00 0.00 3.51
2048 2059 7.062322 TCCAATAGATGTTTTGATAGTGCCAT 58.938 34.615 0.00 0.00 0.00 4.40
2049 2060 6.422333 TCCAATAGATGTTTTGATAGTGCCA 58.578 36.000 0.00 0.00 0.00 4.92
2050 2061 6.942532 TCCAATAGATGTTTTGATAGTGCC 57.057 37.500 0.00 0.00 0.00 5.01
2051 2062 9.241317 CAATTCCAATAGATGTTTTGATAGTGC 57.759 33.333 0.00 0.00 0.00 4.40
2057 2068 9.699410 ACCTATCAATTCCAATAGATGTTTTGA 57.301 29.630 0.00 0.00 0.00 2.69
2058 2069 9.956720 GACCTATCAATTCCAATAGATGTTTTG 57.043 33.333 0.00 0.00 0.00 2.44
2059 2070 9.699410 TGACCTATCAATTCCAATAGATGTTTT 57.301 29.630 0.00 0.00 0.00 2.43
2060 2071 9.125026 GTGACCTATCAATTCCAATAGATGTTT 57.875 33.333 0.00 0.00 36.31 2.83
2061 2072 7.721399 GGTGACCTATCAATTCCAATAGATGTT 59.279 37.037 0.00 0.00 36.31 2.71
2062 2073 7.227156 GGTGACCTATCAATTCCAATAGATGT 58.773 38.462 0.00 0.00 36.31 3.06
2063 2074 7.678947 GGTGACCTATCAATTCCAATAGATG 57.321 40.000 0.00 0.00 36.31 2.90
2082 2093 0.041926 GTAAACGTTGTGCGGGTGAC 60.042 55.000 0.00 0.00 46.52 3.67
2083 2094 1.489070 CGTAAACGTTGTGCGGGTGA 61.489 55.000 0.00 0.00 46.52 4.02
2084 2095 1.083273 CGTAAACGTTGTGCGGGTG 60.083 57.895 0.00 0.00 46.52 4.61
2085 2096 1.216941 CTCGTAAACGTTGTGCGGGT 61.217 55.000 0.00 0.00 46.52 5.28
2086 2097 1.216941 ACTCGTAAACGTTGTGCGGG 61.217 55.000 14.79 14.79 46.52 6.13
2087 2098 0.578211 AACTCGTAAACGTTGTGCGG 59.422 50.000 0.00 4.33 46.52 5.69
2089 2100 1.328374 ACCAACTCGTAAACGTTGTGC 59.672 47.619 0.00 0.00 38.99 4.57
2090 2101 4.043750 TCTACCAACTCGTAAACGTTGTG 58.956 43.478 0.00 0.00 38.99 3.33
2091 2102 4.305989 TCTACCAACTCGTAAACGTTGT 57.694 40.909 0.00 0.00 38.99 3.32
2092 2103 5.159209 AGATCTACCAACTCGTAAACGTTG 58.841 41.667 0.00 1.07 40.03 4.10
2093 2104 5.382618 AGATCTACCAACTCGTAAACGTT 57.617 39.130 0.00 0.00 40.80 3.99
2094 2105 5.048504 TCAAGATCTACCAACTCGTAAACGT 60.049 40.000 0.00 0.00 40.80 3.99
2095 2106 5.396484 TCAAGATCTACCAACTCGTAAACG 58.604 41.667 0.00 0.00 41.45 3.60
2096 2107 5.805994 CCTCAAGATCTACCAACTCGTAAAC 59.194 44.000 0.00 0.00 0.00 2.01
2097 2108 5.713389 TCCTCAAGATCTACCAACTCGTAAA 59.287 40.000 0.00 0.00 0.00 2.01
2098 2109 5.258841 TCCTCAAGATCTACCAACTCGTAA 58.741 41.667 0.00 0.00 0.00 3.18
2099 2110 4.851843 TCCTCAAGATCTACCAACTCGTA 58.148 43.478 0.00 0.00 0.00 3.43
2100 2111 3.698289 TCCTCAAGATCTACCAACTCGT 58.302 45.455 0.00 0.00 0.00 4.18
2101 2112 4.677584 CTTCCTCAAGATCTACCAACTCG 58.322 47.826 0.00 0.00 0.00 4.18
2102 2113 4.161377 AGCTTCCTCAAGATCTACCAACTC 59.839 45.833 0.00 0.00 0.00 3.01
2103 2114 4.100373 AGCTTCCTCAAGATCTACCAACT 58.900 43.478 0.00 0.00 0.00 3.16
2104 2115 4.081420 TGAGCTTCCTCAAGATCTACCAAC 60.081 45.833 0.00 0.00 44.18 3.77
2105 2116 4.096681 TGAGCTTCCTCAAGATCTACCAA 58.903 43.478 0.00 0.00 44.18 3.67
2106 2117 3.713003 TGAGCTTCCTCAAGATCTACCA 58.287 45.455 0.00 0.00 44.18 3.25
2139 2150 9.917129 TTCTTACATTCGTTGACATCTTACTAA 57.083 29.630 0.00 0.00 0.00 2.24
2140 2151 9.569167 CTTCTTACATTCGTTGACATCTTACTA 57.431 33.333 0.00 0.00 0.00 1.82
2141 2152 8.304596 TCTTCTTACATTCGTTGACATCTTACT 58.695 33.333 0.00 0.00 0.00 2.24
2142 2153 8.462143 TCTTCTTACATTCGTTGACATCTTAC 57.538 34.615 0.00 0.00 0.00 2.34
2143 2154 8.304596 ACTCTTCTTACATTCGTTGACATCTTA 58.695 33.333 0.00 0.00 0.00 2.10
2144 2155 7.116948 CACTCTTCTTACATTCGTTGACATCTT 59.883 37.037 0.00 0.00 0.00 2.40
2145 2156 6.587990 CACTCTTCTTACATTCGTTGACATCT 59.412 38.462 0.00 0.00 0.00 2.90
2146 2157 6.366332 ACACTCTTCTTACATTCGTTGACATC 59.634 38.462 0.00 0.00 0.00 3.06
2147 2158 6.223852 ACACTCTTCTTACATTCGTTGACAT 58.776 36.000 0.00 0.00 0.00 3.06
2148 2159 5.597806 ACACTCTTCTTACATTCGTTGACA 58.402 37.500 0.00 0.00 0.00 3.58
2149 2160 6.639686 TGTACACTCTTCTTACATTCGTTGAC 59.360 38.462 0.00 0.00 0.00 3.18
2150 2161 6.741109 TGTACACTCTTCTTACATTCGTTGA 58.259 36.000 0.00 0.00 0.00 3.18
2151 2162 7.381408 TCTTGTACACTCTTCTTACATTCGTTG 59.619 37.037 0.00 0.00 0.00 4.10
2152 2163 7.431249 TCTTGTACACTCTTCTTACATTCGTT 58.569 34.615 0.00 0.00 0.00 3.85
2153 2164 6.978338 TCTTGTACACTCTTCTTACATTCGT 58.022 36.000 0.00 0.00 0.00 3.85
2154 2165 7.044641 CGATCTTGTACACTCTTCTTACATTCG 60.045 40.741 0.00 0.00 0.00 3.34
2155 2166 7.968956 TCGATCTTGTACACTCTTCTTACATTC 59.031 37.037 0.00 0.00 0.00 2.67
2156 2167 7.755822 GTCGATCTTGTACACTCTTCTTACATT 59.244 37.037 0.00 0.00 0.00 2.71
2157 2168 7.121463 AGTCGATCTTGTACACTCTTCTTACAT 59.879 37.037 0.00 0.00 0.00 2.29
2158 2169 6.430308 AGTCGATCTTGTACACTCTTCTTACA 59.570 38.462 0.00 0.00 0.00 2.41
2159 2170 6.844254 AGTCGATCTTGTACACTCTTCTTAC 58.156 40.000 0.00 0.00 0.00 2.34
2160 2171 7.390996 AGAAGTCGATCTTGTACACTCTTCTTA 59.609 37.037 0.00 0.00 36.69 2.10
2161 2172 5.968528 AGTCGATCTTGTACACTCTTCTT 57.031 39.130 0.00 0.00 0.00 2.52
2162 2173 5.708230 AGAAGTCGATCTTGTACACTCTTCT 59.292 40.000 0.00 5.06 36.40 2.85
2163 2174 5.945155 AGAAGTCGATCTTGTACACTCTTC 58.055 41.667 0.00 2.96 36.40 2.87
2164 2175 5.473846 TGAGAAGTCGATCTTGTACACTCTT 59.526 40.000 0.00 0.00 36.40 2.85
2165 2176 5.004448 TGAGAAGTCGATCTTGTACACTCT 58.996 41.667 0.00 0.00 36.40 3.24
2166 2177 5.298197 TGAGAAGTCGATCTTGTACACTC 57.702 43.478 0.00 0.00 36.40 3.51
2167 2178 5.906113 ATGAGAAGTCGATCTTGTACACT 57.094 39.130 0.00 0.00 36.40 3.55
2168 2179 7.168302 CCATAATGAGAAGTCGATCTTGTACAC 59.832 40.741 0.00 0.00 36.40 2.90
2169 2180 7.068226 TCCATAATGAGAAGTCGATCTTGTACA 59.932 37.037 5.20 0.00 36.40 2.90
2170 2181 7.426410 TCCATAATGAGAAGTCGATCTTGTAC 58.574 38.462 5.20 0.00 36.40 2.90
2171 2182 7.582667 TCCATAATGAGAAGTCGATCTTGTA 57.417 36.000 5.20 0.00 36.40 2.41
2172 2183 6.471233 TCCATAATGAGAAGTCGATCTTGT 57.529 37.500 5.20 1.85 36.40 3.16
2173 2184 7.440556 ACATTCCATAATGAGAAGTCGATCTTG 59.559 37.037 5.18 0.00 44.50 3.02
2174 2185 7.440556 CACATTCCATAATGAGAAGTCGATCTT 59.559 37.037 5.18 0.00 44.50 2.40
2175 2186 6.927936 CACATTCCATAATGAGAAGTCGATCT 59.072 38.462 5.18 0.00 44.50 2.75
2176 2187 6.925718 TCACATTCCATAATGAGAAGTCGATC 59.074 38.462 5.18 0.00 44.50 3.69
2177 2188 6.820335 TCACATTCCATAATGAGAAGTCGAT 58.180 36.000 5.18 0.00 44.50 3.59
2178 2189 6.220726 TCACATTCCATAATGAGAAGTCGA 57.779 37.500 5.18 0.00 44.50 4.20
2179 2190 6.908870 TTCACATTCCATAATGAGAAGTCG 57.091 37.500 5.18 0.00 43.38 4.18
2191 2202 8.762645 TGAAGAGTATACTTCTTCACATTCCAT 58.237 33.333 26.70 2.10 43.11 3.41
2192 2203 8.134202 TGAAGAGTATACTTCTTCACATTCCA 57.866 34.615 26.70 14.15 43.11 3.53
2193 2204 8.470805 TCTGAAGAGTATACTTCTTCACATTCC 58.529 37.037 26.70 12.62 43.11 3.01
2194 2205 9.862371 TTCTGAAGAGTATACTTCTTCACATTC 57.138 33.333 26.70 14.74 43.11 2.67
2196 2207 9.868277 CTTTCTGAAGAGTATACTTCTTCACAT 57.132 33.333 26.70 4.72 43.11 3.21
2197 2208 8.861086 ACTTTCTGAAGAGTATACTTCTTCACA 58.139 33.333 26.70 20.35 43.11 3.58
2198 2209 9.699703 AACTTTCTGAAGAGTATACTTCTTCAC 57.300 33.333 26.70 14.40 43.11 3.18
2199 2210 9.698309 CAACTTTCTGAAGAGTATACTTCTTCA 57.302 33.333 27.57 27.57 44.96 3.02
2200 2211 9.699703 ACAACTTTCTGAAGAGTATACTTCTTC 57.300 33.333 23.90 23.90 44.34 2.87
2201 2212 9.482627 CACAACTTTCTGAAGAGTATACTTCTT 57.517 33.333 6.88 11.30 44.34 2.52
2202 2213 8.643324 ACACAACTTTCTGAAGAGTATACTTCT 58.357 33.333 6.88 3.13 44.34 2.85
2203 2214 8.819643 ACACAACTTTCTGAAGAGTATACTTC 57.180 34.615 6.88 2.16 44.31 3.01
2207 2218 9.204570 GCTTAACACAACTTTCTGAAGAGTATA 57.795 33.333 5.92 0.00 36.69 1.47
2208 2219 7.934120 AGCTTAACACAACTTTCTGAAGAGTAT 59.066 33.333 5.92 0.00 36.69 2.12
2209 2220 7.272978 AGCTTAACACAACTTTCTGAAGAGTA 58.727 34.615 5.92 0.00 36.69 2.59
2210 2221 6.116126 AGCTTAACACAACTTTCTGAAGAGT 58.884 36.000 0.00 0.00 36.69 3.24
2211 2222 6.610741 AGCTTAACACAACTTTCTGAAGAG 57.389 37.500 0.00 0.00 36.69 2.85
2212 2223 7.715249 ACATAGCTTAACACAACTTTCTGAAGA 59.285 33.333 0.00 0.00 36.69 2.87
2213 2224 7.865707 ACATAGCTTAACACAACTTTCTGAAG 58.134 34.615 0.00 0.00 38.87 3.02
2214 2225 7.801716 ACATAGCTTAACACAACTTTCTGAA 57.198 32.000 0.00 0.00 0.00 3.02
2215 2226 8.364894 TCTACATAGCTTAACACAACTTTCTGA 58.635 33.333 0.00 0.00 0.00 3.27
2216 2227 8.534333 TCTACATAGCTTAACACAACTTTCTG 57.466 34.615 0.00 0.00 0.00 3.02
2217 2228 9.155975 CATCTACATAGCTTAACACAACTTTCT 57.844 33.333 0.00 0.00 0.00 2.52
2218 2229 8.391106 CCATCTACATAGCTTAACACAACTTTC 58.609 37.037 0.00 0.00 0.00 2.62
2219 2230 7.336931 CCCATCTACATAGCTTAACACAACTTT 59.663 37.037 0.00 0.00 0.00 2.66
2220 2231 6.823689 CCCATCTACATAGCTTAACACAACTT 59.176 38.462 0.00 0.00 0.00 2.66
2221 2232 6.070194 ACCCATCTACATAGCTTAACACAACT 60.070 38.462 0.00 0.00 0.00 3.16
2222 2233 6.113411 ACCCATCTACATAGCTTAACACAAC 58.887 40.000 0.00 0.00 0.00 3.32
2223 2234 6.308015 ACCCATCTACATAGCTTAACACAA 57.692 37.500 0.00 0.00 0.00 3.33
2224 2235 5.950544 ACCCATCTACATAGCTTAACACA 57.049 39.130 0.00 0.00 0.00 3.72
2225 2236 6.346096 TCAACCCATCTACATAGCTTAACAC 58.654 40.000 0.00 0.00 0.00 3.32
2226 2237 6.156256 ACTCAACCCATCTACATAGCTTAACA 59.844 38.462 0.00 0.00 0.00 2.41
2227 2238 6.583562 ACTCAACCCATCTACATAGCTTAAC 58.416 40.000 0.00 0.00 0.00 2.01
2228 2239 6.808321 ACTCAACCCATCTACATAGCTTAA 57.192 37.500 0.00 0.00 0.00 1.85
2229 2240 6.015350 GCTACTCAACCCATCTACATAGCTTA 60.015 42.308 0.00 0.00 31.84 3.09
2230 2241 5.221541 GCTACTCAACCCATCTACATAGCTT 60.222 44.000 0.00 0.00 31.84 3.74
2231 2242 4.282195 GCTACTCAACCCATCTACATAGCT 59.718 45.833 0.00 0.00 31.84 3.32
2232 2243 4.039245 TGCTACTCAACCCATCTACATAGC 59.961 45.833 0.00 0.00 34.46 2.97
2233 2244 5.791336 TGCTACTCAACCCATCTACATAG 57.209 43.478 0.00 0.00 0.00 2.23
2234 2245 5.012046 CCATGCTACTCAACCCATCTACATA 59.988 44.000 0.00 0.00 0.00 2.29
2235 2246 4.202398 CCATGCTACTCAACCCATCTACAT 60.202 45.833 0.00 0.00 0.00 2.29
2236 2247 3.134623 CCATGCTACTCAACCCATCTACA 59.865 47.826 0.00 0.00 0.00 2.74
2237 2248 3.388024 TCCATGCTACTCAACCCATCTAC 59.612 47.826 0.00 0.00 0.00 2.59
2238 2249 3.653164 TCCATGCTACTCAACCCATCTA 58.347 45.455 0.00 0.00 0.00 1.98
2239 2250 2.481441 TCCATGCTACTCAACCCATCT 58.519 47.619 0.00 0.00 0.00 2.90
2240 2251 3.118261 TCTTCCATGCTACTCAACCCATC 60.118 47.826 0.00 0.00 0.00 3.51
2241 2252 2.846206 TCTTCCATGCTACTCAACCCAT 59.154 45.455 0.00 0.00 0.00 4.00
2242 2253 2.265367 TCTTCCATGCTACTCAACCCA 58.735 47.619 0.00 0.00 0.00 4.51
2243 2254 3.274288 CTTCTTCCATGCTACTCAACCC 58.726 50.000 0.00 0.00 0.00 4.11
2244 2255 2.680339 GCTTCTTCCATGCTACTCAACC 59.320 50.000 0.00 0.00 0.00 3.77
2245 2256 2.349886 CGCTTCTTCCATGCTACTCAAC 59.650 50.000 0.00 0.00 0.00 3.18
2246 2257 2.621338 CGCTTCTTCCATGCTACTCAA 58.379 47.619 0.00 0.00 0.00 3.02
2247 2258 1.740380 GCGCTTCTTCCATGCTACTCA 60.740 52.381 0.00 0.00 0.00 3.41
2248 2259 0.933796 GCGCTTCTTCCATGCTACTC 59.066 55.000 0.00 0.00 0.00 2.59
2249 2260 0.539051 AGCGCTTCTTCCATGCTACT 59.461 50.000 2.64 0.00 33.37 2.57
2250 2261 0.654683 CAGCGCTTCTTCCATGCTAC 59.345 55.000 7.50 0.00 33.90 3.58
2251 2262 0.536724 TCAGCGCTTCTTCCATGCTA 59.463 50.000 7.50 0.00 33.90 3.49
2252 2263 0.107312 ATCAGCGCTTCTTCCATGCT 60.107 50.000 7.50 0.00 36.05 3.79
2253 2264 0.307146 GATCAGCGCTTCTTCCATGC 59.693 55.000 7.50 0.00 0.00 4.06
2254 2265 0.580578 CGATCAGCGCTTCTTCCATG 59.419 55.000 7.50 0.00 0.00 3.66
2255 2266 0.531532 CCGATCAGCGCTTCTTCCAT 60.532 55.000 7.50 0.00 39.11 3.41
2256 2267 1.153568 CCGATCAGCGCTTCTTCCA 60.154 57.895 7.50 0.00 39.11 3.53
2257 2268 0.460284 TTCCGATCAGCGCTTCTTCC 60.460 55.000 7.50 0.00 39.11 3.46
2258 2269 1.260033 CATTCCGATCAGCGCTTCTTC 59.740 52.381 7.50 3.80 39.11 2.87
2259 2270 1.293924 CATTCCGATCAGCGCTTCTT 58.706 50.000 7.50 0.00 39.11 2.52
2260 2271 0.176680 ACATTCCGATCAGCGCTTCT 59.823 50.000 7.50 0.00 39.11 2.85
2261 2272 1.009829 AACATTCCGATCAGCGCTTC 58.990 50.000 7.50 2.22 39.11 3.86
2262 2273 0.729116 CAACATTCCGATCAGCGCTT 59.271 50.000 7.50 0.00 39.11 4.68
2263 2274 0.391661 ACAACATTCCGATCAGCGCT 60.392 50.000 2.64 2.64 39.11 5.92
2264 2275 0.447801 AACAACATTCCGATCAGCGC 59.552 50.000 0.00 0.00 39.11 5.92
2265 2276 4.088648 GTTTAACAACATTCCGATCAGCG 58.911 43.478 0.00 0.00 34.62 5.18
2266 2277 5.041951 TGTTTAACAACATTCCGATCAGC 57.958 39.130 0.00 0.00 38.03 4.26
2279 2290 8.763984 TGATAGTAAAAGGGGTTGTTTAACAA 57.236 30.769 6.41 6.41 38.58 2.83
2280 2291 7.449086 CCTGATAGTAAAAGGGGTTGTTTAACA 59.551 37.037 0.00 0.00 38.58 2.41
2281 2292 7.666804 TCCTGATAGTAAAAGGGGTTGTTTAAC 59.333 37.037 2.52 0.00 36.04 2.01
2282 2293 7.757611 TCCTGATAGTAAAAGGGGTTGTTTAA 58.242 34.615 2.52 0.00 0.00 1.52
2283 2294 7.332433 TCCTGATAGTAAAAGGGGTTGTTTA 57.668 36.000 2.52 0.00 0.00 2.01
2284 2295 6.208840 TCCTGATAGTAAAAGGGGTTGTTT 57.791 37.500 2.52 0.00 0.00 2.83
2285 2296 5.853572 TCCTGATAGTAAAAGGGGTTGTT 57.146 39.130 2.52 0.00 0.00 2.83
2286 2297 7.519347 TTATCCTGATAGTAAAAGGGGTTGT 57.481 36.000 2.52 0.00 0.00 3.32
2287 2298 7.502561 CCTTTATCCTGATAGTAAAAGGGGTTG 59.497 40.741 9.74 0.00 0.00 3.77
2288 2299 7.367459 CCCTTTATCCTGATAGTAAAAGGGGTT 60.367 40.741 20.88 0.72 30.52 4.11
2289 2300 6.102762 CCCTTTATCCTGATAGTAAAAGGGGT 59.897 42.308 20.88 3.42 30.52 4.95
2290 2301 6.102762 ACCCTTTATCCTGATAGTAAAAGGGG 59.897 42.308 26.85 17.58 34.10 4.79
2291 2302 6.998673 CACCCTTTATCCTGATAGTAAAAGGG 59.001 42.308 24.18 24.18 34.93 3.95
2292 2303 6.998673 CCACCCTTTATCCTGATAGTAAAAGG 59.001 42.308 10.33 10.33 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.