AutoCloner

Multiple sequence alignment - TraesCS2A01G265900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G265900	chr2A	100.000	2558	0	0	1	2558	422220851	422223408	0.000000e+00	4724.0
1	TraesCS2A01G265900	chr2A	94.470	1103	38	7	715	1810	421060732	421059646	0.000000e+00	1677.0
2	TraesCS2A01G265900	chr2A	92.928	1103	49	12	715	1810	422102873	422103953	0.000000e+00	1578.0
3	TraesCS2A01G265900	chr2A	91.944	360	27	2	1844	2203	421059583	421059226	1.060000e-138	503.0
4	TraesCS2A01G265900	chr2A	91.014	345	25	3	1844	2188	422104016	422104354	6.450000e-126	460.0
5	TraesCS2A01G265900	chr2A	85.217	345	19	12	2026	2359	421062811	421062488	2.450000e-85	326.0
6	TraesCS2A01G265900	chr2A	81.148	366	30	13	378	708	421061132	421060771	9.080000e-65	257.0
7	TraesCS2A01G265900	chr2A	95.833	72	2	1	2307	2377	421059134	421059063	5.780000e-22	115.0
8	TraesCS2A01G265900	chr2B	92.606	1136	59	8	711	1835	382731860	382732981	0.000000e+00	1609.0
9	TraesCS2A01G265900	chr2B	92.184	934	55	7	714	1643	381914979	381914060	0.000000e+00	1304.0
10	TraesCS2A01G265900	chr2B	94.215	242	10	1	1844	2081	382733027	382733268	1.450000e-97	366.0
11	TraesCS2A01G265900	chr2B	84.348	345	22	12	2026	2359	382598193	382598516	2.470000e-80	309.0
12	TraesCS2A01G265900	chr2B	91.626	203	10	3	1640	1835	381908864	381908662	9.020000e-70	274.0
13	TraesCS2A01G265900	chr2B	86.747	166	18	4	2385	2550	381907998	381907837	5.620000e-42	182.0
14	TraesCS2A01G265900	chr2B	92.661	109	8	0	2081	2189	382733958	382734066	9.470000e-35	158.0
15	TraesCS2A01G265900	chr2B	91.000	100	7	2	2292	2390	381908251	381908153	1.600000e-27	134.0
16	TraesCS2A01G265900	chr2B	82.550	149	17	9	2238	2377	382734082	382734230	3.460000e-24	122.0
17	TraesCS2A01G265900	chr2D	89.136	856	54	16	474	1301	314564942	314565786	0.000000e+00	1029.0
18	TraesCS2A01G265900	chr2D	88.889	855	59	14	474	1301	314794600	314795445	0.000000e+00	1020.0
19	TraesCS2A01G265900	chr2D	95.918	588	24	0	714	1301	314054099	314053512	0.000000e+00	953.0
20	TraesCS2A01G265900	chr2D	84.221	976	101	24	1189	2135	314795294	314796245	0.000000e+00	900.0
21	TraesCS2A01G265900	chr2D	88.771	659	55	5	1189	1844	314053663	314053021	0.000000e+00	789.0
22	TraesCS2A01G265900	chr2D	83.333	834	91	20	1189	1996	314565635	314566446	0.000000e+00	726.0
23	TraesCS2A01G265900	chr2D	80.989	647	72	30	32	644	314054844	314054215	1.390000e-127	466.0
24	TraesCS2A01G265900	chr2D	87.952	332	24	12	2238	2558	314045831	314045505	6.680000e-101	377.0
25	TraesCS2A01G265900	chr2D	87.202	336	29	5	2026	2351	314498886	314499217	1.120000e-98	370.0
26	TraesCS2A01G265900	chr2D	87.500	256	19	4	2067	2310	314050875	314050621	1.500000e-72	283.0
27	TraesCS2A01G265900	chr2D	84.667	300	19	13	1907	2203	314051354	314051079	9.020000e-70	274.0
28	TraesCS2A01G265900	chr2D	96.241	133	5	0	1993	2125	314566634	314566766	4.290000e-53	219.0
29	TraesCS2A01G265900	chr2D	92.913	127	8	1	1719	1844	314046342	314046216	1.560000e-42	183.0
30	TraesCS2A01G265900	chr2D	89.109	101	9	2	2292	2391	314566880	314566979	9.610000e-25	124.0
31	TraesCS2A01G265900	chr2D	95.556	45	2	0	645	689	314054198	314054154	3.530000e-09	73.1
32	TraesCS2A01G265900	chr4A	80.769	182	19	11	2391	2558	51372676	51372497	7.430000e-26	128.0
33	TraesCS2A01G265900	chr5B	80.240	167	25	4	2388	2552	242205477	242205637	4.470000e-23	119.0
34	TraesCS2A01G265900	chr5B	88.750	80	8	1	2480	2558	507692017	507692096	2.090000e-16	97.1
35	TraesCS2A01G265900	chr5A	82.171	129	16	5	2433	2557	558665472	558665347	1.250000e-18	104.0
36	TraesCS2A01G265900	chr7A	88.372	86	7	3	2474	2557	222672239	222672323	1.620000e-17	100.0
37	TraesCS2A01G265900	chr7A	85.897	78	9	2	2393	2469	230080728	230080804	5.870000e-12	82.4
38	TraesCS2A01G265900	chr6B	91.781	73	5	1	2479	2551	4648528	4648457	1.620000e-17	100.0
39	TraesCS2A01G265900	chr5D	88.750	80	8	1	2479	2558	380174799	380174721	2.090000e-16	97.1
40	TraesCS2A01G265900	chr3D	89.333	75	6	2	2391	2463	598017951	598017877	2.710000e-15	93.5
41	TraesCS2A01G265900	chr6A	80.800	125	14	9	2392	2512	27790603	27790721	3.510000e-14	89.8
42	TraesCS2A01G265900	chr6A	81.197	117	11	7	2392	2503	114285344	114285454	1.630000e-12	84.2
43	TraesCS2A01G265900	chr4D	88.732	71	4	3	2395	2463	55714305	55714373	1.630000e-12	84.2
44	TraesCS2A01G265900	chr3B	84.524	84	7	4	2393	2474	755858250	755858171	7.590000e-11	78.7
45	TraesCS2A01G265900	chr7B	83.721	86	8	5	2393	2474	735512848	735512931	2.730000e-10	76.8
46	TraesCS2A01G265900	chr4B	100.000	30	0	0	4	33	187023167	187023196	3.560000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G265900	chr2A	422220851	422223408	2557	False	4724.000000	4724	100.000000	1	2558	1	chr2A.!!$F1	2557
1	TraesCS2A01G265900	chr2A	422102873	422104354	1481	False	1019.000000	1578	91.971000	715	2188	2	chr2A.!!$F2	1473
2	TraesCS2A01G265900	chr2A	421059063	421062811	3748	True	575.600000	1677	89.722400	378	2377	5	chr2A.!!$R1	1999
3	TraesCS2A01G265900	chr2B	381914060	381914979	919	True	1304.000000	1304	92.184000	714	1643	1	chr2B.!!$R1	929
4	TraesCS2A01G265900	chr2B	382731860	382734230	2370	False	563.750000	1609	90.508000	711	2377	4	chr2B.!!$F2	1666
5	TraesCS2A01G265900	chr2D	314794600	314796245	1645	False	960.000000	1020	86.555000	474	2135	2	chr2D.!!$F3	1661
6	TraesCS2A01G265900	chr2D	314564942	314566979	2037	False	524.500000	1029	89.454750	474	2391	4	chr2D.!!$F2	1917
7	TraesCS2A01G265900	chr2D	314050621	314054844	4223	True	473.016667	953	88.900167	32	2310	6	chr2D.!!$R2	2278
8	TraesCS2A01G265900	chr2D	314045505	314046342	837	True	280.000000	377	90.432500	1719	2558	2	chr2D.!!$R1	839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
71	72	1.002134	CAACCTTCCATGAGCCGGT	60.002	57.895	1.9	0.0	0.0	5.28	F
76	77	1.202348	CCTTCCATGAGCCGGTTTTTC	59.798	52.381	1.9	0.0	0.0	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1544	3039	0.039911	AGTCCACTAGCCCGTCTTCT	59.96	55.0	0.00	0.0	0.0	2.85	R
1805	3322	0.110486	AGGAACCGGATGCAAACTGT	59.89	50.0	9.46	0.0	0.0	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	3.705043	CCTTGCTTGGTGATATTGCTC	57.295	47.619	0.00	0.00	0.00	4.26
21	22	2.360165	CCTTGCTTGGTGATATTGCTCC	59.640	50.000	0.00	0.00	0.00	4.70
22	23	2.804986	TGCTTGGTGATATTGCTCCA	57.195	45.000	0.00	0.00	0.00	3.86
23	24	3.084536	TGCTTGGTGATATTGCTCCAA	57.915	42.857	0.00	0.00	38.64	3.53
24	25	3.429492	TGCTTGGTGATATTGCTCCAAA	58.571	40.909	0.00	0.00	39.92	3.28
25	26	3.831333	TGCTTGGTGATATTGCTCCAAAA	59.169	39.130	0.00	0.00	39.92	2.44
26	27	4.282957	TGCTTGGTGATATTGCTCCAAAAA	59.717	37.500	0.00	0.00	39.92	1.94
27	28	5.046448	TGCTTGGTGATATTGCTCCAAAAAT	60.046	36.000	0.00	0.00	39.92	1.82
30	31	5.271598	TGGTGATATTGCTCCAAAAATCCT	58.728	37.500	0.00	0.00	0.00	3.24
36	37	3.243359	TGCTCCAAAAATCCTCACCTT	57.757	42.857	0.00	0.00	0.00	3.50
67	68	3.831715	GTTGTACAACCTTCCATGAGC	57.168	47.619	25.31	0.00	35.36	4.26
71	72	1.002134	CAACCTTCCATGAGCCGGT	60.002	57.895	1.90	0.00	0.00	5.28
76	77	1.202348	CCTTCCATGAGCCGGTTTTTC	59.798	52.381	1.90	0.00	0.00	2.29
83	84	1.335496	TGAGCCGGTTTTTCTTTTCCG	59.665	47.619	1.90	0.00	42.22	4.30
86	87	2.166870	AGCCGGTTTTTCTTTTCCGTTT	59.833	40.909	1.90	0.00	41.17	3.60
87	88	2.283086	GCCGGTTTTTCTTTTCCGTTTG	59.717	45.455	1.90	0.00	41.17	2.93
175	185	9.679661	TTGCCTTTTCCTTTTTCTTCTTAATTT	57.320	25.926	0.00	0.00	0.00	1.82
240	251	5.745294	CGCTAACAATTTCTGAATTCATGGG	59.255	40.000	8.96	0.00	33.25	4.00
333	349	8.970691	ATCATGGAAATCTTTTAAAACTCGTG	57.029	30.769	0.00	0.00	0.00	4.35
466	1766	6.957920	TTTGAGAACAAATGGACTCATGAA	57.042	33.333	0.00	3.81	40.47	2.57
467	1767	7.528996	TTTGAGAACAAATGGACTCATGAAT	57.471	32.000	0.00	0.00	40.47	2.57
509	1826	9.860898	GCTCACTGGATATTTTTGAAATAAAGT	57.139	29.630	0.00	1.08	0.00	2.66
548	1865	9.736023	TCTCAAAGATTTTGAAAGAAGCTAAAC	57.264	29.630	5.82	0.00	0.00	2.01
674	2013	2.206223	GGGTTGGGAAATAGGAGTCCT	58.794	52.381	17.78	17.78	37.71	3.85
682	2021	1.777941	AATAGGAGTCCTGGTCCGAC	58.222	55.000	22.69	0.00	39.30	4.79
695	2034	3.122850	CCGACCCGGCTACGTATT	58.877	61.111	0.00	0.00	41.17	1.89
757	2135	7.434492	ACAGATATAACCGACCTAGACAATTG	58.566	38.462	3.24	3.24	0.00	2.32
765	2143	4.634004	CCGACCTAGACAATTGCAAATACA	59.366	41.667	1.71	0.00	0.00	2.29
766	2144	5.220662	CCGACCTAGACAATTGCAAATACAG	60.221	44.000	1.71	0.00	0.00	2.74
1204	2582	1.809869	CTGTCGGAGATGAGCGGAA	59.190	57.895	0.00	0.00	40.67	4.30
1278	2773	2.813908	GTGGCATCGGACACGGAC	60.814	66.667	0.00	0.00	44.59	4.79
1279	2774	4.429212	TGGCATCGGACACGGACG	62.429	66.667	0.00	0.00	41.39	4.79
1287	2782	4.430765	GACACGGACGGCGGTGAT	62.431	66.667	32.85	18.04	45.19	3.06
1288	2783	4.430765	ACACGGACGGCGGTGATC	62.431	66.667	32.85	4.33	45.19	2.92
1443	2938	2.809601	CCGGTCGACAAGGAAGCG	60.810	66.667	20.59	11.48	0.00	4.68
1490	2985	2.506217	TCCGACGTTCATGAGCGC	60.506	61.111	28.72	20.26	38.63	5.92
1526	3021	2.593725	CGAGCTCCCGATCCCGTA	60.594	66.667	8.47	0.00	0.00	4.02
1534	3029	1.492176	TCCCGATCCCGTACTACTTCT	59.508	52.381	0.00	0.00	0.00	2.85
1661	3163	2.438868	AAACCCAATTTCAGCGCTTC	57.561	45.000	7.50	0.00	0.00	3.86
1662	3164	1.327303	AACCCAATTTCAGCGCTTCA	58.673	45.000	7.50	0.00	0.00	3.02
1805	3322	2.919602	ACTCCCCTTGCAATTCTTCCTA	59.080	45.455	0.00	0.00	0.00	2.94
1818	3335	2.972625	TCTTCCTACAGTTTGCATCCG	58.027	47.619	0.00	0.00	0.00	4.18
1819	3336	2.009774	CTTCCTACAGTTTGCATCCGG	58.990	52.381	0.00	0.00	0.00	5.14
1840	4948	3.326880	GGTTCCTCTACTGAAGAAACCCA	59.673	47.826	0.00	0.00	32.46	4.51
1842	4950	3.858135	TCCTCTACTGAAGAAACCCAGT	58.142	45.455	0.00	0.00	44.81	4.00
1860	4968	1.204941	AGTTCCGCTAAATCTGTCGCT	59.795	47.619	0.00	0.00	0.00	4.93
1975	5115	7.587037	TTTATAATCCTTGATTTGGAGCAGG	57.413	36.000	0.00	0.00	36.99	4.85
1996	5136	5.582665	CAGGAGTTCCATTTCTACTGCTAAC	59.417	44.000	0.28	0.00	38.33	2.34
2106	6130	3.025322	ACAAATGGGACCTTCACACAA	57.975	42.857	0.00	0.00	29.32	3.33
2189	6213	7.123997	TGCCATACCAAATGTCAGATGTTTTAT	59.876	33.333	0.00	0.00	0.00	1.40
2190	6214	7.436080	GCCATACCAAATGTCAGATGTTTTATG	59.564	37.037	0.00	0.00	0.00	1.90
2223	6605	1.762370	TCTCCGATGAATGCAAGGCTA	59.238	47.619	0.00	0.00	0.00	3.93
2234	6616	5.530171	TGAATGCAAGGCTATGATTCTTCTC	59.470	40.000	0.00	0.00	0.00	2.87
2283	6665	2.435805	TGTACCTCCTCATCTTGATGCC	59.564	50.000	5.78	0.00	0.00	4.40
2286	6668	2.512896	ACCTCCTCATCTTGATGCCATT	59.487	45.455	5.78	0.00	0.00	3.16
2290	6672	3.715315	TCCTCATCTTGATGCCATTCTCT	59.285	43.478	5.78	0.00	0.00	3.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.360165	GGAGCAATATCACCAAGCAAGG	59.640	50.000	0.00	0.00	0.00	3.61
1	2	3.018856	TGGAGCAATATCACCAAGCAAG	58.981	45.455	0.00	0.00	0.00	4.01
2	3	3.084536	TGGAGCAATATCACCAAGCAA	57.915	42.857	0.00	0.00	0.00	3.91
3	4	2.804986	TGGAGCAATATCACCAAGCA	57.195	45.000	0.00	0.00	0.00	3.91
5	6	6.044682	GGATTTTTGGAGCAATATCACCAAG	58.955	40.000	0.00	0.00	42.16	3.61
6	7	5.721000	AGGATTTTTGGAGCAATATCACCAA	59.279	36.000	0.00	0.00	40.05	3.67
7	8	5.271598	AGGATTTTTGGAGCAATATCACCA	58.728	37.500	0.00	0.00	0.00	4.17
8	9	5.360714	TGAGGATTTTTGGAGCAATATCACC	59.639	40.000	0.00	0.00	0.00	4.02
10	11	5.360714	GGTGAGGATTTTTGGAGCAATATCA	59.639	40.000	0.00	0.00	0.00	2.15
11	12	5.595952	AGGTGAGGATTTTTGGAGCAATATC	59.404	40.000	0.00	0.00	0.00	1.63
13	14	4.934356	AGGTGAGGATTTTTGGAGCAATA	58.066	39.130	0.00	0.00	0.00	1.90
15	16	3.243359	AGGTGAGGATTTTTGGAGCAA	57.757	42.857	0.00	0.00	0.00	3.91
16	17	2.978156	AGGTGAGGATTTTTGGAGCA	57.022	45.000	0.00	0.00	0.00	4.26
53	54	0.609131	AACCGGCTCATGGAAGGTTG	60.609	55.000	0.00	0.00	42.85	3.77
71	72	6.633234	GCAAACAAACAAACGGAAAAGAAAAA	59.367	30.769	0.00	0.00	0.00	1.94
76	77	3.122111	ACGCAAACAAACAAACGGAAAAG	59.878	39.130	0.00	0.00	0.00	2.27
83	84	3.797348	AAACCACGCAAACAAACAAAC	57.203	38.095	0.00	0.00	0.00	2.93
137	140	3.636764	GGAAAAGGCAAAGACCAAGAAGA	59.363	43.478	0.00	0.00	0.00	2.87
144	147	5.023533	AGAAAAAGGAAAAGGCAAAGACC	57.976	39.130	0.00	0.00	0.00	3.85
151	154	9.935682	CAAAATTAAGAAGAAAAAGGAAAAGGC	57.064	29.630	0.00	0.00	0.00	4.35
218	229	6.632909	TGCCCATGAATTCAGAAATTGTTAG	58.367	36.000	14.54	0.07	35.21	2.34
219	230	6.602410	TGCCCATGAATTCAGAAATTGTTA	57.398	33.333	14.54	0.00	35.21	2.41
220	231	5.486735	TGCCCATGAATTCAGAAATTGTT	57.513	34.783	14.54	0.00	35.21	2.83
222	233	8.671384	AAATATGCCCATGAATTCAGAAATTG	57.329	30.769	14.54	6.65	35.21	2.32
223	234	7.935210	GGAAATATGCCCATGAATTCAGAAATT	59.065	33.333	14.54	4.20	37.80	1.82
224	235	7.071447	TGGAAATATGCCCATGAATTCAGAAAT	59.929	33.333	14.54	5.85	0.00	2.17
227	238	5.456779	TGGAAATATGCCCATGAATTCAGA	58.543	37.500	14.54	0.00	0.00	3.27
228	239	5.794726	TGGAAATATGCCCATGAATTCAG	57.205	39.130	14.54	6.16	0.00	3.02
309	323	8.160521	TCACGAGTTTTAAAAGATTTCCATGA	57.839	30.769	0.00	1.55	0.00	3.07
310	324	8.690840	GTTCACGAGTTTTAAAAGATTTCCATG	58.309	33.333	0.00	0.00	0.00	3.66
311	325	8.410141	TGTTCACGAGTTTTAAAAGATTTCCAT	58.590	29.630	0.00	0.00	0.00	3.41
312	326	7.763356	TGTTCACGAGTTTTAAAAGATTTCCA	58.237	30.769	0.00	0.00	0.00	3.53
313	327	8.797266	ATGTTCACGAGTTTTAAAAGATTTCC	57.203	30.769	0.00	0.00	0.00	3.13
483	1800	9.860898	ACTTTATTTCAAAAATATCCAGTGAGC	57.139	29.630	0.00	0.00	0.00	4.26
594	1915	5.425196	ACGTGGTAGGCCTTCTATAAAAA	57.575	39.130	12.58	0.00	35.27	1.94
595	1916	5.163416	GGTACGTGGTAGGCCTTCTATAAAA	60.163	44.000	12.58	0.00	35.27	1.52
596	1917	4.342092	GGTACGTGGTAGGCCTTCTATAAA	59.658	45.833	12.58	0.00	35.27	1.40
599	1920	2.091444	AGGTACGTGGTAGGCCTTCTAT	60.091	50.000	12.58	0.00	35.27	1.98
600	1921	1.285962	AGGTACGTGGTAGGCCTTCTA	59.714	52.381	12.58	0.00	35.27	2.10
601	1922	0.040794	AGGTACGTGGTAGGCCTTCT	59.959	55.000	12.58	0.00	35.27	2.85
705	2044	7.537649	ACGTCGTATTTCTAGATCGTACGTATA	59.462	37.037	16.05	5.98	39.17	1.47
708	2047	4.504461	ACGTCGTATTTCTAGATCGTACGT	59.496	41.667	16.05	19.76	39.17	3.57
710	2049	6.867388	TGTACGTCGTATTTCTAGATCGTAC	58.133	40.000	8.59	14.57	46.47	3.67
711	2050	6.918022	TCTGTACGTCGTATTTCTAGATCGTA	59.082	38.462	8.59	0.00	0.00	3.43
740	2118	2.851263	TGCAATTGTCTAGGTCGGTT	57.149	45.000	7.40	0.00	0.00	4.44
757	2135	4.264460	AGATCCGGATCTCTGTATTTGC	57.736	45.455	36.36	11.79	44.37	3.68
765	2143	5.071370	ACGTATTTGTAGATCCGGATCTCT	58.929	41.667	42.84	28.05	44.37	3.10
766	2144	5.373981	ACGTATTTGTAGATCCGGATCTC	57.626	43.478	42.84	32.63	44.37	2.75
1106	2484	5.483685	TTTGTTATCTATCCATCTCCGGG	57.516	43.478	0.00	0.00	0.00	5.73
1270	2765	4.430765	ATCACCGCCGTCCGTGTC	62.431	66.667	0.00	0.00	34.38	3.67
1271	2766	4.430765	GATCACCGCCGTCCGTGT	62.431	66.667	0.00	0.00	34.38	4.49
1297	2792	4.892379	CATGCCCAATGTCGCGCG	62.892	66.667	26.76	26.76	0.00	6.86
1298	2793	4.557605	CCATGCCCAATGTCGCGC	62.558	66.667	0.00	0.00	34.11	6.86
1299	2794	3.891400	CCCATGCCCAATGTCGCG	61.891	66.667	0.00	0.00	34.11	5.87
1300	2795	4.211502	GCCCATGCCCAATGTCGC	62.212	66.667	0.00	0.00	34.11	5.19
1301	2796	3.891400	CGCCCATGCCCAATGTCG	61.891	66.667	0.00	0.00	34.11	4.35
1302	2797	3.530260	CCGCCCATGCCCAATGTC	61.530	66.667	0.00	0.00	34.11	3.06
1347	2842	2.738521	GCGCTCCAGCTTGTTCGA	60.739	61.111	0.00	0.00	39.32	3.71
1394	2889	1.960689	TCTTGTCACACCGATCAGTGA	59.039	47.619	15.97	11.65	42.06	3.41
1503	2998	3.798954	GATCGGGAGCTCGCTTGGG	62.799	68.421	26.13	12.35	0.00	4.12
1506	3001	3.541713	GGGATCGGGAGCTCGCTT	61.542	66.667	26.13	14.82	35.40	4.68
1534	3029	2.368875	AGCCCGTCTTCTTCTTCTTCAA	59.631	45.455	0.00	0.00	0.00	2.69
1543	3038	0.896226	GTCCACTAGCCCGTCTTCTT	59.104	55.000	0.00	0.00	0.00	2.52
1544	3039	0.039911	AGTCCACTAGCCCGTCTTCT	59.960	55.000	0.00	0.00	0.00	2.85
1545	3040	1.677052	CTAGTCCACTAGCCCGTCTTC	59.323	57.143	0.76	0.00	39.43	2.87
1546	3041	1.765230	CTAGTCCACTAGCCCGTCTT	58.235	55.000	0.76	0.00	39.43	3.01
1547	3042	3.498502	CTAGTCCACTAGCCCGTCT	57.501	57.895	0.76	0.00	39.43	4.18
1661	3163	7.694388	TTACACTACTAAAAGCGCATCTATG	57.306	36.000	11.47	0.00	0.00	2.23
1662	3164	8.888579	AATTACACTACTAAAAGCGCATCTAT	57.111	30.769	11.47	0.00	0.00	1.98
1805	3322	0.110486	AGGAACCGGATGCAAACTGT	59.890	50.000	9.46	0.00	0.00	3.55
1818	3335	3.326880	TGGGTTTCTTCAGTAGAGGAACC	59.673	47.826	5.87	5.87	39.27	3.62
1819	3336	4.040584	ACTGGGTTTCTTCAGTAGAGGAAC	59.959	45.833	0.00	0.00	41.81	3.62
1840	4948	1.204941	AGCGACAGATTTAGCGGAACT	59.795	47.619	0.00	0.00	34.34	3.01
1842	4950	3.728076	ATAGCGACAGATTTAGCGGAA	57.272	42.857	0.00	0.00	34.34	4.30
1975	5115	5.064071	GCTGTTAGCAGTAGAAATGGAACTC	59.936	44.000	8.48	0.00	44.32	3.01
2106	6130	3.556775	GTGCATGCACAAATTCAAGTGTT	59.443	39.130	39.12	0.00	45.53	3.32
2189	6213	9.489084	CATTCATCGGAGAGTATTTATAAACCA	57.511	33.333	0.00	0.00	43.63	3.67
2190	6214	8.443937	GCATTCATCGGAGAGTATTTATAAACC	58.556	37.037	0.00	0.00	43.63	3.27
2208	6580	5.961396	AGAATCATAGCCTTGCATTCATC	57.039	39.130	0.00	0.00	0.00	2.92
2223	6605	3.274288	GGTTTCAGGCGAGAAGAATCAT	58.726	45.455	0.00	0.00	0.00	2.45
2234	6616	1.225376	TGTAAGTGCGGTTTCAGGCG	61.225	55.000	0.00	0.00	0.00	5.52
2514	6898	7.293402	TCAAGCACTTGAAAAATTGTTGAAG	57.707	32.000	10.58	6.07	45.56	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.