Multiple sequence alignment - TraesCS2A01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G265800 chr2A 100.000 2552 0 0 1 2552 422102153 422104704 0.000000e+00 4713.0
1 TraesCS2A01G265800 chr2A 96.067 1551 48 8 663 2202 421060788 421059240 0.000000e+00 2514.0
2 TraesCS2A01G265800 chr2A 92.928 1103 49 12 721 1801 422221565 422222660 0.000000e+00 1578.0
3 TraesCS2A01G265800 chr2A 90.838 382 21 12 286 661 421061132 421060759 1.360000e-137 499.0
4 TraesCS2A01G265800 chr2A 91.014 345 25 3 1864 2202 422222694 422223038 6.430000e-126 460.0
5 TraesCS2A01G265800 chr2A 96.721 122 1 1 2196 2317 421065431 421065313 1.550000e-47 200.0
6 TraesCS2A01G265800 chr2A 83.051 59 8 2 225 281 699517694 699517752 5.000000e-03 52.8
7 TraesCS2A01G265800 chr2B 90.712 1475 92 24 663 2098 382731800 382733268 0.000000e+00 1923.0
8 TraesCS2A01G265800 chr2B 92.617 921 49 8 721 1632 381914978 381914068 0.000000e+00 1306.0
9 TraesCS2A01G265800 chr2B 91.445 526 27 9 1633 2142 381908858 381908335 0.000000e+00 706.0
10 TraesCS2A01G265800 chr2B 76.895 541 79 34 130 645 382731292 382731811 5.410000e-67 265.0
11 TraesCS2A01G265800 chr2B 95.082 122 3 1 2196 2317 382595653 382595771 3.350000e-44 189.0
12 TraesCS2A01G265800 chr2D 86.503 978 80 25 1197 2154 314795302 314796247 0.000000e+00 1027.0
13 TraesCS2A01G265800 chr2D 94.901 608 25 5 700 1301 314565179 314565786 0.000000e+00 946.0
14 TraesCS2A01G265800 chr2D 94.901 608 25 5 700 1301 314794838 314795445 0.000000e+00 946.0
15 TraesCS2A01G265800 chr2D 93.189 646 33 7 670 1304 314054154 314053509 0.000000e+00 939.0
16 TraesCS2A01G265800 chr2D 86.315 833 68 20 1197 2013 314565643 314566445 0.000000e+00 865.0
17 TraesCS2A01G265800 chr2D 90.226 665 58 4 1189 1851 314053663 314053004 0.000000e+00 861.0
18 TraesCS2A01G265800 chr2D 86.178 709 45 32 1 680 314054795 314054111 0.000000e+00 717.0
19 TraesCS2A01G265800 chr2D 86.588 507 41 14 1709 2202 314046342 314045850 3.740000e-148 534.0
20 TraesCS2A01G265800 chr2D 78.112 498 72 22 169 645 314564697 314565178 5.380000e-72 281.0
21 TraesCS2A01G265800 chr2D 92.262 168 10 3 481 645 314794670 314794837 4.240000e-58 235.0
22 TraesCS2A01G265800 chr2D 95.385 130 6 0 2013 2142 314566637 314566766 9.250000e-50 207.0
23 TraesCS2A01G265800 chr2D 95.902 122 2 1 2196 2317 314496327 314496445 7.200000e-46 195.0
24 TraesCS2A01G265800 chr1B 94.894 235 9 3 2320 2552 31227888 31227655 5.190000e-97 364.0
25 TraesCS2A01G265800 chr1B 87.069 116 9 3 2196 2311 84365753 84365862 2.670000e-25 126.0
26 TraesCS2A01G265800 chr5D 94.118 238 12 2 2316 2552 545721430 545721194 6.710000e-96 361.0
27 TraesCS2A01G265800 chr4D 94.421 233 13 0 2320 2552 400919395 400919163 2.410000e-95 359.0
28 TraesCS2A01G265800 chr4A 94.093 237 13 1 2316 2551 690240713 690240949 2.410000e-95 359.0
29 TraesCS2A01G265800 chr4A 87.069 116 10 2 2196 2311 722099242 722099352 2.670000e-25 126.0
30 TraesCS2A01G265800 chr4A 88.350 103 10 1 2196 2298 722081856 722081956 3.450000e-24 122.0
31 TraesCS2A01G265800 chr3B 94.805 231 11 1 2323 2552 661736624 661736394 2.410000e-95 359.0
32 TraesCS2A01G265800 chr3B 94.783 230 11 1 2323 2551 584537772 584537543 8.680000e-95 357.0
33 TraesCS2A01G265800 chr7B 94.421 233 12 1 2320 2552 550507809 550507578 8.680000e-95 357.0
34 TraesCS2A01G265800 chr6B 94.421 233 11 2 2320 2551 253444930 253445161 8.680000e-95 357.0
35 TraesCS2A01G265800 chr5B 94.421 233 12 1 2320 2551 36557368 36557136 8.680000e-95 357.0
36 TraesCS2A01G265800 chrUn 86.885 122 11 2 2196 2317 2105241 2105125 5.730000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G265800 chr2A 422102153 422104704 2551 False 4713.00 4713 100.000000 1 2552 1 chr2A.!!$F1 2551
1 TraesCS2A01G265800 chr2A 421059240 421061132 1892 True 1506.50 2514 93.452500 286 2202 2 chr2A.!!$R2 1916
2 TraesCS2A01G265800 chr2A 422221565 422223038 1473 False 1019.00 1578 91.971000 721 2202 2 chr2A.!!$F3 1481
3 TraesCS2A01G265800 chr2B 381914068 381914978 910 True 1306.00 1306 92.617000 721 1632 1 chr2B.!!$R2 911
4 TraesCS2A01G265800 chr2B 382731292 382733268 1976 False 1094.00 1923 83.803500 130 2098 2 chr2B.!!$F2 1968
5 TraesCS2A01G265800 chr2B 381908335 381908858 523 True 706.00 706 91.445000 1633 2142 1 chr2B.!!$R1 509
6 TraesCS2A01G265800 chr2D 314053004 314054795 1791 True 839.00 939 89.864333 1 1851 3 chr2D.!!$R2 1850
7 TraesCS2A01G265800 chr2D 314794670 314796247 1577 False 736.00 1027 91.222000 481 2154 3 chr2D.!!$F3 1673
8 TraesCS2A01G265800 chr2D 314564697 314566766 2069 False 574.75 946 88.678250 169 2142 4 chr2D.!!$F2 1973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 1040 0.237498 CGTGCTTTTCGTCCCCTTTC 59.763 55.0 0.0 0.0 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 2973 0.110295 TGTGACTGTGGGGGATGTTG 59.89 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 9.797473 CTTTCCTTTTATCTTTTTCGCATTTTC 57.203 29.630 0.00 0.00 0.00 2.29
51 53 7.883229 TCCTTTTATCTTTTTCGCATTTTCC 57.117 32.000 0.00 0.00 0.00 3.13
72 74 6.524545 TCCCCTTCTTCTTCTTTCCTTTTA 57.475 37.500 0.00 0.00 0.00 1.52
141 143 8.586570 TTTGTGAGCATTTTTATTGAATTCGT 57.413 26.923 0.04 0.00 0.00 3.85
185 227 7.312154 TGGACATTTTTCCAAATATGAGAACG 58.688 34.615 8.83 0.00 43.04 3.95
302 346 6.320926 TCGGATCATTTTATGAATGCAAGGAA 59.679 34.615 0.00 0.00 43.50 3.36
377 422 6.522625 TTGAGAACAAATTTTGGACTCACA 57.477 33.333 25.39 18.41 42.13 3.58
543 614 0.704076 ATTTAGGGAAGCCTGCCACA 59.296 50.000 0.00 0.00 34.87 4.17
645 718 2.563179 AGCCGGCTACCTATCATTGTAG 59.437 50.000 31.86 0.00 37.97 2.74
646 719 2.353803 GCCGGCTACCTATCATTGTAGG 60.354 54.545 22.15 9.45 45.54 3.18
648 721 3.769844 CCGGCTACCTATCATTGTAGGAT 59.230 47.826 15.10 0.00 43.27 3.24
649 722 4.223032 CCGGCTACCTATCATTGTAGGATT 59.777 45.833 15.10 2.12 43.27 3.01
650 723 5.171476 CGGCTACCTATCATTGTAGGATTG 58.829 45.833 15.10 8.29 43.27 2.67
652 725 6.166982 GGCTACCTATCATTGTAGGATTGTC 58.833 44.000 15.10 6.28 43.27 3.18
718 800 3.573110 GACCTAGGATATGTACGCAGGTT 59.427 47.826 17.98 0.00 35.11 3.50
912 995 2.234168 AGTAAGTCGCCTTCTTCTTCCC 59.766 50.000 0.00 0.00 31.89 3.97
952 1040 0.237498 CGTGCTTTTCGTCCCCTTTC 59.763 55.000 0.00 0.00 0.00 2.62
1132 1220 7.040409 GCCGGAGATGGATAGATAACAAATTTT 60.040 37.037 5.05 0.00 0.00 1.82
1271 1398 4.794439 CAGACGCGTGGCATCGGA 62.794 66.667 20.70 0.00 0.00 4.55
1272 1399 4.796231 AGACGCGTGGCATCGGAC 62.796 66.667 20.70 0.00 0.00 4.79
1278 1405 2.813908 GTGGCATCGGACACGGAC 60.814 66.667 0.00 0.00 44.59 4.79
1279 1406 4.429212 TGGCATCGGACACGGACG 62.429 66.667 0.00 0.00 41.39 4.79
1287 1414 4.430765 GACACGGACGGCGGTGAT 62.431 66.667 32.85 18.04 45.19 3.06
1288 1415 4.430765 ACACGGACGGCGGTGATC 62.431 66.667 32.85 4.33 45.19 2.92
1444 1649 1.004918 CCGGTCGACAAGGAAGCTT 60.005 57.895 20.59 0.00 0.00 3.74
1485 1690 2.185867 GCTGGCCCGACGTTCATA 59.814 61.111 0.00 0.00 0.00 2.15
1529 1734 2.203126 GCTCCCGATCCCTTGCTG 60.203 66.667 0.00 0.00 0.00 4.41
1585 1804 2.596346 AGCAACAACACATGGGATTGA 58.404 42.857 0.00 0.00 0.00 2.57
1764 2008 7.229306 TGGCATGACAATCATAAACTATCTTCC 59.771 37.037 0.00 0.00 34.28 3.46
1830 2109 3.133141 ACTGAAGAGTGAAGAAAGCCC 57.867 47.619 0.00 0.00 0.00 5.19
1869 2148 2.433838 CTCACACCTGCTCCGCTG 60.434 66.667 0.00 0.00 0.00 5.18
1891 2172 5.972935 TGAATCTGTCGCCATAAAAGACTA 58.027 37.500 0.00 0.00 36.01 2.59
1945 2248 7.676947 ACAAGGCAATGTTTCTAACTAGTCTA 58.323 34.615 0.00 0.00 0.00 2.59
1968 2271 4.768145 TGTTGATTTAACAAGTCGCTTCG 58.232 39.130 0.00 0.00 45.86 3.79
2008 2315 2.680339 GAGCAGCAGTTCCATTTCTACC 59.320 50.000 0.00 0.00 0.00 3.18
2088 2590 0.104671 ACCCACAGCATTGCACAAAC 59.895 50.000 11.91 0.00 0.00 2.93
2131 2633 1.599542 GACCTTCACACAGACACTTGC 59.400 52.381 0.00 0.00 0.00 4.01
2202 2707 6.165577 GCCATACCAAATGTCAGATGTTTTT 58.834 36.000 0.00 0.00 0.00 1.94
2203 2708 6.311200 GCCATACCAAATGTCAGATGTTTTTC 59.689 38.462 0.00 0.00 0.00 2.29
2204 2709 7.605449 CCATACCAAATGTCAGATGTTTTTCT 58.395 34.615 0.00 0.00 0.00 2.52
2205 2710 8.090214 CCATACCAAATGTCAGATGTTTTTCTT 58.910 33.333 0.00 0.00 0.00 2.52
2206 2711 9.480053 CATACCAAATGTCAGATGTTTTTCTTT 57.520 29.630 0.00 0.00 0.00 2.52
2207 2712 7.775397 ACCAAATGTCAGATGTTTTTCTTTG 57.225 32.000 0.00 0.00 0.00 2.77
2208 2713 6.258507 ACCAAATGTCAGATGTTTTTCTTTGC 59.741 34.615 0.00 0.00 0.00 3.68
2209 2714 6.258287 CCAAATGTCAGATGTTTTTCTTTGCA 59.742 34.615 0.00 0.00 0.00 4.08
2210 2715 6.833342 AATGTCAGATGTTTTTCTTTGCAC 57.167 33.333 0.00 0.00 0.00 4.57
2211 2716 5.321959 TGTCAGATGTTTTTCTTTGCACA 57.678 34.783 0.00 0.00 0.00 4.57
2212 2717 5.904941 TGTCAGATGTTTTTCTTTGCACAT 58.095 33.333 0.00 0.00 32.41 3.21
2213 2718 7.036996 TGTCAGATGTTTTTCTTTGCACATA 57.963 32.000 0.00 0.00 29.81 2.29
2214 2719 6.917477 TGTCAGATGTTTTTCTTTGCACATAC 59.083 34.615 0.00 0.00 29.81 2.39
2215 2720 6.917477 GTCAGATGTTTTTCTTTGCACATACA 59.083 34.615 0.00 0.00 29.81 2.29
2216 2721 7.113965 GTCAGATGTTTTTCTTTGCACATACAG 59.886 37.037 0.00 0.00 29.81 2.74
2217 2722 6.919662 CAGATGTTTTTCTTTGCACATACAGT 59.080 34.615 0.00 0.00 29.81 3.55
2218 2723 7.436080 CAGATGTTTTTCTTTGCACATACAGTT 59.564 33.333 0.00 0.00 29.81 3.16
2219 2724 7.649306 AGATGTTTTTCTTTGCACATACAGTTC 59.351 33.333 0.00 0.00 29.81 3.01
2220 2725 6.039616 TGTTTTTCTTTGCACATACAGTTCC 58.960 36.000 0.00 0.00 0.00 3.62
2221 2726 6.127479 TGTTTTTCTTTGCACATACAGTTCCT 60.127 34.615 0.00 0.00 0.00 3.36
2222 2727 5.689383 TTTCTTTGCACATACAGTTCCTC 57.311 39.130 0.00 0.00 0.00 3.71
2223 2728 4.623932 TCTTTGCACATACAGTTCCTCT 57.376 40.909 0.00 0.00 0.00 3.69
2224 2729 4.569943 TCTTTGCACATACAGTTCCTCTC 58.430 43.478 0.00 0.00 0.00 3.20
2225 2730 3.334583 TTGCACATACAGTTCCTCTCC 57.665 47.619 0.00 0.00 0.00 3.71
2226 2731 2.540383 TGCACATACAGTTCCTCTCCT 58.460 47.619 0.00 0.00 0.00 3.69
2227 2732 2.497675 TGCACATACAGTTCCTCTCCTC 59.502 50.000 0.00 0.00 0.00 3.71
2228 2733 2.763448 GCACATACAGTTCCTCTCCTCT 59.237 50.000 0.00 0.00 0.00 3.69
2229 2734 3.181480 GCACATACAGTTCCTCTCCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
2230 2735 3.383185 CACATACAGTTCCTCTCCTCTCC 59.617 52.174 0.00 0.00 0.00 3.71
2231 2736 3.270960 ACATACAGTTCCTCTCCTCTCCT 59.729 47.826 0.00 0.00 0.00 3.69
2232 2737 2.230130 ACAGTTCCTCTCCTCTCCTG 57.770 55.000 0.00 0.00 0.00 3.86
2233 2738 1.431243 ACAGTTCCTCTCCTCTCCTGT 59.569 52.381 0.00 0.00 0.00 4.00
2234 2739 2.099405 CAGTTCCTCTCCTCTCCTGTC 58.901 57.143 0.00 0.00 0.00 3.51
2235 2740 1.006639 AGTTCCTCTCCTCTCCTGTCC 59.993 57.143 0.00 0.00 0.00 4.02
2236 2741 0.336737 TTCCTCTCCTCTCCTGTCCC 59.663 60.000 0.00 0.00 0.00 4.46
2237 2742 1.075600 CCTCTCCTCTCCTGTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
2238 2743 1.454847 CTCTCCTCTCCTGTCCCCG 60.455 68.421 0.00 0.00 0.00 5.73
2239 2744 2.218115 CTCTCCTCTCCTGTCCCCGT 62.218 65.000 0.00 0.00 0.00 5.28
2240 2745 1.305381 CTCCTCTCCTGTCCCCGTT 60.305 63.158 0.00 0.00 0.00 4.44
2241 2746 1.305046 TCCTCTCCTGTCCCCGTTC 60.305 63.158 0.00 0.00 0.00 3.95
2242 2747 2.711922 CCTCTCCTGTCCCCGTTCG 61.712 68.421 0.00 0.00 0.00 3.95
2243 2748 1.977544 CTCTCCTGTCCCCGTTCGT 60.978 63.158 0.00 0.00 0.00 3.85
2244 2749 1.935327 CTCTCCTGTCCCCGTTCGTC 61.935 65.000 0.00 0.00 0.00 4.20
2245 2750 2.993264 TCCTGTCCCCGTTCGTCC 60.993 66.667 0.00 0.00 0.00 4.79
2246 2751 3.307906 CCTGTCCCCGTTCGTCCA 61.308 66.667 0.00 0.00 0.00 4.02
2247 2752 2.738480 CTGTCCCCGTTCGTCCAA 59.262 61.111 0.00 0.00 0.00 3.53
2248 2753 1.295423 CTGTCCCCGTTCGTCCAAT 59.705 57.895 0.00 0.00 0.00 3.16
2249 2754 1.004320 TGTCCCCGTTCGTCCAATG 60.004 57.895 0.00 0.00 0.00 2.82
2250 2755 1.004200 GTCCCCGTTCGTCCAATGT 60.004 57.895 0.00 0.00 0.00 2.71
2251 2756 0.247185 GTCCCCGTTCGTCCAATGTA 59.753 55.000 0.00 0.00 0.00 2.29
2252 2757 0.975135 TCCCCGTTCGTCCAATGTAA 59.025 50.000 0.00 0.00 0.00 2.41
2253 2758 1.347050 TCCCCGTTCGTCCAATGTAAA 59.653 47.619 0.00 0.00 0.00 2.01
2254 2759 2.027007 TCCCCGTTCGTCCAATGTAAAT 60.027 45.455 0.00 0.00 0.00 1.40
2255 2760 2.750712 CCCCGTTCGTCCAATGTAAATT 59.249 45.455 0.00 0.00 0.00 1.82
2256 2761 3.426963 CCCCGTTCGTCCAATGTAAATTG 60.427 47.826 0.00 0.00 0.00 2.32
2257 2762 3.189702 CCCGTTCGTCCAATGTAAATTGT 59.810 43.478 4.91 0.00 0.00 2.71
2258 2763 4.392445 CCCGTTCGTCCAATGTAAATTGTA 59.608 41.667 4.91 0.00 0.00 2.41
2259 2764 5.318349 CCGTTCGTCCAATGTAAATTGTAC 58.682 41.667 4.91 0.00 0.00 2.90
2260 2765 5.121142 CCGTTCGTCCAATGTAAATTGTACT 59.879 40.000 4.91 0.00 0.00 2.73
2261 2766 6.347888 CCGTTCGTCCAATGTAAATTGTACTT 60.348 38.462 4.91 0.00 0.00 2.24
2262 2767 6.735063 CGTTCGTCCAATGTAAATTGTACTTC 59.265 38.462 4.91 0.00 0.00 3.01
2263 2768 7.569774 CGTTCGTCCAATGTAAATTGTACTTCA 60.570 37.037 4.91 0.00 0.00 3.02
2264 2769 7.359262 TCGTCCAATGTAAATTGTACTTCAG 57.641 36.000 4.91 0.00 0.00 3.02
2265 2770 6.370442 TCGTCCAATGTAAATTGTACTTCAGG 59.630 38.462 4.91 0.00 0.00 3.86
2266 2771 6.322491 GTCCAATGTAAATTGTACTTCAGGC 58.678 40.000 4.91 0.00 0.00 4.85
2267 2772 5.417580 TCCAATGTAAATTGTACTTCAGGCC 59.582 40.000 4.91 0.00 0.00 5.19
2268 2773 5.184864 CCAATGTAAATTGTACTTCAGGCCA 59.815 40.000 5.01 0.00 0.00 5.36
2269 2774 6.295011 CCAATGTAAATTGTACTTCAGGCCAA 60.295 38.462 5.01 0.00 0.00 4.52
2270 2775 6.909550 ATGTAAATTGTACTTCAGGCCAAA 57.090 33.333 5.01 0.00 0.00 3.28
2271 2776 6.909550 TGTAAATTGTACTTCAGGCCAAAT 57.090 33.333 5.01 0.00 0.00 2.32
2272 2777 6.686630 TGTAAATTGTACTTCAGGCCAAATG 58.313 36.000 5.01 0.00 0.00 2.32
2273 2778 3.874392 ATTGTACTTCAGGCCAAATGC 57.126 42.857 5.01 0.00 40.16 3.56
2274 2779 2.584835 TGTACTTCAGGCCAAATGCT 57.415 45.000 5.01 0.00 40.92 3.79
2275 2780 2.161855 TGTACTTCAGGCCAAATGCTG 58.838 47.619 5.01 0.00 40.92 4.41
2276 2781 2.224744 TGTACTTCAGGCCAAATGCTGA 60.225 45.455 5.01 0.00 40.92 4.26
2277 2782 1.999648 ACTTCAGGCCAAATGCTGAA 58.000 45.000 5.01 3.85 40.92 3.02
2278 2783 2.649331 CTTCAGGCCAAATGCTGAAG 57.351 50.000 13.83 13.83 42.84 3.02
2279 2784 0.604578 TTCAGGCCAAATGCTGAAGC 59.395 50.000 5.01 0.00 40.92 3.86
2280 2785 1.217244 CAGGCCAAATGCTGAAGCC 59.783 57.895 5.01 0.00 44.20 4.35
2281 2786 3.704151 GGCCAAATGCTGAAGCCT 58.296 55.556 0.00 0.00 40.57 4.58
2282 2787 1.977685 GGCCAAATGCTGAAGCCTT 59.022 52.632 0.00 0.00 40.57 4.35
2283 2788 0.322648 GGCCAAATGCTGAAGCCTTT 59.677 50.000 0.00 0.00 40.57 3.11
2284 2789 1.550072 GGCCAAATGCTGAAGCCTTTA 59.450 47.619 0.00 0.00 40.57 1.85
2285 2790 2.169144 GGCCAAATGCTGAAGCCTTTAT 59.831 45.455 0.00 0.00 40.57 1.40
2286 2791 3.451526 GCCAAATGCTGAAGCCTTTATC 58.548 45.455 5.42 0.00 36.89 1.75
2287 2792 3.131755 GCCAAATGCTGAAGCCTTTATCT 59.868 43.478 5.42 0.00 36.89 1.98
2288 2793 4.382362 GCCAAATGCTGAAGCCTTTATCTT 60.382 41.667 5.42 0.00 36.89 2.40
2289 2794 5.346522 CCAAATGCTGAAGCCTTTATCTTC 58.653 41.667 5.42 0.00 36.89 2.87
2290 2795 5.126707 CCAAATGCTGAAGCCTTTATCTTCT 59.873 40.000 5.42 0.00 40.31 2.85
2291 2796 6.350780 CCAAATGCTGAAGCCTTTATCTTCTT 60.351 38.462 5.42 0.00 40.31 2.52
2292 2797 7.148018 CCAAATGCTGAAGCCTTTATCTTCTTA 60.148 37.037 5.42 0.00 40.31 2.10
2293 2798 8.411683 CAAATGCTGAAGCCTTTATCTTCTTAT 58.588 33.333 5.42 0.00 40.31 1.73
2294 2799 8.530804 AATGCTGAAGCCTTTATCTTCTTATT 57.469 30.769 0.00 1.22 40.31 1.40
2295 2800 7.325660 TGCTGAAGCCTTTATCTTCTTATTG 57.674 36.000 0.00 0.00 40.31 1.90
2296 2801 7.112122 TGCTGAAGCCTTTATCTTCTTATTGA 58.888 34.615 0.00 0.00 40.31 2.57
2297 2802 7.776969 TGCTGAAGCCTTTATCTTCTTATTGAT 59.223 33.333 0.00 0.00 40.31 2.57
2298 2803 8.074972 GCTGAAGCCTTTATCTTCTTATTGATG 58.925 37.037 4.66 0.00 40.31 3.07
2299 2804 7.934457 TGAAGCCTTTATCTTCTTATTGATGC 58.066 34.615 4.66 0.00 40.31 3.91
2300 2805 7.776969 TGAAGCCTTTATCTTCTTATTGATGCT 59.223 33.333 4.66 0.00 40.31 3.79
2301 2806 8.530804 AAGCCTTTATCTTCTTATTGATGCTT 57.469 30.769 0.00 0.00 0.00 3.91
2302 2807 8.530804 AGCCTTTATCTTCTTATTGATGCTTT 57.469 30.769 0.00 0.00 0.00 3.51
2303 2808 8.411683 AGCCTTTATCTTCTTATTGATGCTTTG 58.588 33.333 0.00 0.00 0.00 2.77
2304 2809 8.193438 GCCTTTATCTTCTTATTGATGCTTTGT 58.807 33.333 0.00 0.00 0.00 2.83
2335 2840 6.755542 ATGTTTATTAGAAGGGAGAGAGGG 57.244 41.667 0.00 0.00 0.00 4.30
2336 2841 5.850278 TGTTTATTAGAAGGGAGAGAGGGA 58.150 41.667 0.00 0.00 0.00 4.20
2337 2842 6.453476 TGTTTATTAGAAGGGAGAGAGGGAT 58.547 40.000 0.00 0.00 0.00 3.85
2338 2843 6.909158 TGTTTATTAGAAGGGAGAGAGGGATT 59.091 38.462 0.00 0.00 0.00 3.01
2339 2844 7.406151 TGTTTATTAGAAGGGAGAGAGGGATTT 59.594 37.037 0.00 0.00 0.00 2.17
2340 2845 5.903198 ATTAGAAGGGAGAGAGGGATTTG 57.097 43.478 0.00 0.00 0.00 2.32
2341 2846 3.213160 AGAAGGGAGAGAGGGATTTGT 57.787 47.619 0.00 0.00 0.00 2.83
2342 2847 2.843113 AGAAGGGAGAGAGGGATTTGTG 59.157 50.000 0.00 0.00 0.00 3.33
2343 2848 1.589414 AGGGAGAGAGGGATTTGTGG 58.411 55.000 0.00 0.00 0.00 4.17
2344 2849 1.081174 AGGGAGAGAGGGATTTGTGGA 59.919 52.381 0.00 0.00 0.00 4.02
2345 2850 1.916181 GGGAGAGAGGGATTTGTGGAA 59.084 52.381 0.00 0.00 0.00 3.53
2346 2851 2.511637 GGGAGAGAGGGATTTGTGGAAT 59.488 50.000 0.00 0.00 0.00 3.01
2347 2852 3.716872 GGGAGAGAGGGATTTGTGGAATA 59.283 47.826 0.00 0.00 0.00 1.75
2348 2853 4.202409 GGGAGAGAGGGATTTGTGGAATAG 60.202 50.000 0.00 0.00 0.00 1.73
2349 2854 4.410555 GGAGAGAGGGATTTGTGGAATAGT 59.589 45.833 0.00 0.00 0.00 2.12
2350 2855 5.104318 GGAGAGAGGGATTTGTGGAATAGTT 60.104 44.000 0.00 0.00 0.00 2.24
2351 2856 5.995446 AGAGAGGGATTTGTGGAATAGTTC 58.005 41.667 0.00 0.00 0.00 3.01
2352 2857 4.770795 AGAGGGATTTGTGGAATAGTTCG 58.229 43.478 0.00 0.00 0.00 3.95
2353 2858 4.225267 AGAGGGATTTGTGGAATAGTTCGT 59.775 41.667 0.00 0.00 0.00 3.85
2354 2859 4.918588 AGGGATTTGTGGAATAGTTCGTT 58.081 39.130 0.00 0.00 0.00 3.85
2355 2860 4.700213 AGGGATTTGTGGAATAGTTCGTTG 59.300 41.667 0.00 0.00 0.00 4.10
2356 2861 4.457949 GGGATTTGTGGAATAGTTCGTTGT 59.542 41.667 0.00 0.00 0.00 3.32
2357 2862 5.644636 GGGATTTGTGGAATAGTTCGTTGTA 59.355 40.000 0.00 0.00 0.00 2.41
2358 2863 6.317893 GGGATTTGTGGAATAGTTCGTTGTAT 59.682 38.462 0.00 0.00 0.00 2.29
2359 2864 7.148137 GGGATTTGTGGAATAGTTCGTTGTATT 60.148 37.037 0.00 0.00 0.00 1.89
2360 2865 7.696453 GGATTTGTGGAATAGTTCGTTGTATTG 59.304 37.037 0.00 0.00 0.00 1.90
2361 2866 5.539582 TGTGGAATAGTTCGTTGTATTGC 57.460 39.130 0.00 0.00 0.00 3.56
2362 2867 5.242434 TGTGGAATAGTTCGTTGTATTGCT 58.758 37.500 0.00 0.00 30.55 3.91
2363 2868 5.703592 TGTGGAATAGTTCGTTGTATTGCTT 59.296 36.000 0.00 0.00 30.55 3.91
2364 2869 6.021596 GTGGAATAGTTCGTTGTATTGCTTG 58.978 40.000 0.00 0.00 30.55 4.01
2365 2870 5.935206 TGGAATAGTTCGTTGTATTGCTTGA 59.065 36.000 0.00 0.00 30.55 3.02
2366 2871 6.092122 TGGAATAGTTCGTTGTATTGCTTGAG 59.908 38.462 0.00 0.00 30.55 3.02
2367 2872 3.813529 AGTTCGTTGTATTGCTTGAGC 57.186 42.857 0.00 0.00 42.50 4.26
2368 2873 2.484264 AGTTCGTTGTATTGCTTGAGCC 59.516 45.455 0.00 0.00 41.18 4.70
2369 2874 2.177394 TCGTTGTATTGCTTGAGCCA 57.823 45.000 0.00 0.00 41.18 4.75
2370 2875 1.804151 TCGTTGTATTGCTTGAGCCAC 59.196 47.619 0.00 0.00 41.18 5.01
2371 2876 1.464023 CGTTGTATTGCTTGAGCCACG 60.464 52.381 0.00 0.00 41.18 4.94
2372 2877 1.535462 GTTGTATTGCTTGAGCCACGT 59.465 47.619 0.00 0.00 41.18 4.49
2373 2878 1.155889 TGTATTGCTTGAGCCACGTG 58.844 50.000 9.08 9.08 41.18 4.49
2374 2879 0.447801 GTATTGCTTGAGCCACGTGG 59.552 55.000 30.66 30.66 41.18 4.94
2375 2880 0.676466 TATTGCTTGAGCCACGTGGG 60.676 55.000 34.58 19.11 41.18 4.61
2389 2894 5.808366 CCACGTGGGCATATATATAGGAT 57.192 43.478 27.57 0.00 0.00 3.24
2390 2895 6.174720 CCACGTGGGCATATATATAGGATT 57.825 41.667 27.57 0.00 0.00 3.01
2391 2896 7.297936 CCACGTGGGCATATATATAGGATTA 57.702 40.000 27.57 0.00 0.00 1.75
2392 2897 7.152645 CCACGTGGGCATATATATAGGATTAC 58.847 42.308 27.57 2.84 0.00 1.89
2393 2898 7.201965 CCACGTGGGCATATATATAGGATTACA 60.202 40.741 27.57 0.00 0.00 2.41
2394 2899 8.201464 CACGTGGGCATATATATAGGATTACAA 58.799 37.037 7.95 0.00 0.00 2.41
2395 2900 8.934697 ACGTGGGCATATATATAGGATTACAAT 58.065 33.333 8.56 0.00 0.00 2.71
2396 2901 9.424319 CGTGGGCATATATATAGGATTACAATC 57.576 37.037 8.56 0.00 34.66 2.67
2409 2914 7.682787 AGGATTACAATCATCTACTTGGAGT 57.317 36.000 4.45 0.00 37.15 3.85
2410 2915 8.783660 AGGATTACAATCATCTACTTGGAGTA 57.216 34.615 4.45 0.00 37.15 2.59
2411 2916 8.643324 AGGATTACAATCATCTACTTGGAGTAC 58.357 37.037 4.45 0.00 37.15 2.73
2412 2917 8.421784 GGATTACAATCATCTACTTGGAGTACA 58.578 37.037 4.45 0.00 37.15 2.90
2413 2918 9.817809 GATTACAATCATCTACTTGGAGTACAA 57.182 33.333 0.00 0.00 35.49 2.41
2423 2928 2.839486 TGGAGTACAAGACAAGCCAG 57.161 50.000 0.00 0.00 0.00 4.85
2424 2929 2.325484 TGGAGTACAAGACAAGCCAGA 58.675 47.619 0.00 0.00 0.00 3.86
2425 2930 2.703536 TGGAGTACAAGACAAGCCAGAA 59.296 45.455 0.00 0.00 0.00 3.02
2426 2931 3.067833 GGAGTACAAGACAAGCCAGAAC 58.932 50.000 0.00 0.00 0.00 3.01
2427 2932 3.494398 GGAGTACAAGACAAGCCAGAACA 60.494 47.826 0.00 0.00 0.00 3.18
2428 2933 4.127171 GAGTACAAGACAAGCCAGAACAA 58.873 43.478 0.00 0.00 0.00 2.83
2429 2934 4.523083 AGTACAAGACAAGCCAGAACAAA 58.477 39.130 0.00 0.00 0.00 2.83
2430 2935 5.133221 AGTACAAGACAAGCCAGAACAAAT 58.867 37.500 0.00 0.00 0.00 2.32
2431 2936 4.574599 ACAAGACAAGCCAGAACAAATC 57.425 40.909 0.00 0.00 0.00 2.17
2432 2937 3.319122 ACAAGACAAGCCAGAACAAATCC 59.681 43.478 0.00 0.00 0.00 3.01
2433 2938 3.515602 AGACAAGCCAGAACAAATCCT 57.484 42.857 0.00 0.00 0.00 3.24
2434 2939 4.640771 AGACAAGCCAGAACAAATCCTA 57.359 40.909 0.00 0.00 0.00 2.94
2435 2940 4.583871 AGACAAGCCAGAACAAATCCTAG 58.416 43.478 0.00 0.00 0.00 3.02
2436 2941 4.042187 AGACAAGCCAGAACAAATCCTAGT 59.958 41.667 0.00 0.00 0.00 2.57
2437 2942 4.327680 ACAAGCCAGAACAAATCCTAGTC 58.672 43.478 0.00 0.00 0.00 2.59
2438 2943 3.636153 AGCCAGAACAAATCCTAGTCC 57.364 47.619 0.00 0.00 0.00 3.85
2439 2944 2.912956 AGCCAGAACAAATCCTAGTCCA 59.087 45.455 0.00 0.00 0.00 4.02
2440 2945 3.525199 AGCCAGAACAAATCCTAGTCCAT 59.475 43.478 0.00 0.00 0.00 3.41
2441 2946 3.879892 GCCAGAACAAATCCTAGTCCATC 59.120 47.826 0.00 0.00 0.00 3.51
2442 2947 4.384647 GCCAGAACAAATCCTAGTCCATCT 60.385 45.833 0.00 0.00 0.00 2.90
2443 2948 5.363939 CCAGAACAAATCCTAGTCCATCTC 58.636 45.833 0.00 0.00 0.00 2.75
2444 2949 5.046529 CAGAACAAATCCTAGTCCATCTCG 58.953 45.833 0.00 0.00 0.00 4.04
2445 2950 4.712337 AGAACAAATCCTAGTCCATCTCGT 59.288 41.667 0.00 0.00 0.00 4.18
2446 2951 4.657436 ACAAATCCTAGTCCATCTCGTC 57.343 45.455 0.00 0.00 0.00 4.20
2447 2952 4.282496 ACAAATCCTAGTCCATCTCGTCT 58.718 43.478 0.00 0.00 0.00 4.18
2448 2953 4.712337 ACAAATCCTAGTCCATCTCGTCTT 59.288 41.667 0.00 0.00 0.00 3.01
2449 2954 5.187967 ACAAATCCTAGTCCATCTCGTCTTT 59.812 40.000 0.00 0.00 0.00 2.52
2450 2955 5.523438 AATCCTAGTCCATCTCGTCTTTC 57.477 43.478 0.00 0.00 0.00 2.62
2451 2956 3.288964 TCCTAGTCCATCTCGTCTTTCC 58.711 50.000 0.00 0.00 0.00 3.13
2452 2957 3.053544 TCCTAGTCCATCTCGTCTTTCCT 60.054 47.826 0.00 0.00 0.00 3.36
2453 2958 4.165565 TCCTAGTCCATCTCGTCTTTCCTA 59.834 45.833 0.00 0.00 0.00 2.94
2454 2959 4.888239 CCTAGTCCATCTCGTCTTTCCTAA 59.112 45.833 0.00 0.00 0.00 2.69
2455 2960 5.536916 CCTAGTCCATCTCGTCTTTCCTAAT 59.463 44.000 0.00 0.00 0.00 1.73
2456 2961 6.715718 CCTAGTCCATCTCGTCTTTCCTAATA 59.284 42.308 0.00 0.00 0.00 0.98
2457 2962 7.230913 CCTAGTCCATCTCGTCTTTCCTAATAA 59.769 40.741 0.00 0.00 0.00 1.40
2458 2963 7.419711 AGTCCATCTCGTCTTTCCTAATAAA 57.580 36.000 0.00 0.00 0.00 1.40
2459 2964 7.266400 AGTCCATCTCGTCTTTCCTAATAAAC 58.734 38.462 0.00 0.00 0.00 2.01
2460 2965 7.039882 GTCCATCTCGTCTTTCCTAATAAACA 58.960 38.462 0.00 0.00 0.00 2.83
2461 2966 7.711339 GTCCATCTCGTCTTTCCTAATAAACAT 59.289 37.037 0.00 0.00 0.00 2.71
2462 2967 8.265055 TCCATCTCGTCTTTCCTAATAAACATT 58.735 33.333 0.00 0.00 0.00 2.71
2463 2968 9.542462 CCATCTCGTCTTTCCTAATAAACATTA 57.458 33.333 0.00 0.00 0.00 1.90
2478 2983 8.706322 AATAAACATTATACTCAACATCCCCC 57.294 34.615 0.00 0.00 0.00 5.40
2479 2984 5.725551 AACATTATACTCAACATCCCCCA 57.274 39.130 0.00 0.00 0.00 4.96
2480 2985 5.048846 ACATTATACTCAACATCCCCCAC 57.951 43.478 0.00 0.00 0.00 4.61
2481 2986 4.476846 ACATTATACTCAACATCCCCCACA 59.523 41.667 0.00 0.00 0.00 4.17
2482 2987 4.771114 TTATACTCAACATCCCCCACAG 57.229 45.455 0.00 0.00 0.00 3.66
2483 2988 2.038863 TACTCAACATCCCCCACAGT 57.961 50.000 0.00 0.00 0.00 3.55
2484 2989 0.693049 ACTCAACATCCCCCACAGTC 59.307 55.000 0.00 0.00 0.00 3.51
2485 2990 0.692476 CTCAACATCCCCCACAGTCA 59.308 55.000 0.00 0.00 0.00 3.41
2486 2991 0.400213 TCAACATCCCCCACAGTCAC 59.600 55.000 0.00 0.00 0.00 3.67
2487 2992 0.110295 CAACATCCCCCACAGTCACA 59.890 55.000 0.00 0.00 0.00 3.58
2488 2993 0.850100 AACATCCCCCACAGTCACAA 59.150 50.000 0.00 0.00 0.00 3.33
2489 2994 0.110486 ACATCCCCCACAGTCACAAC 59.890 55.000 0.00 0.00 0.00 3.32
2490 2995 0.955428 CATCCCCCACAGTCACAACG 60.955 60.000 0.00 0.00 0.00 4.10
2491 2996 2.124507 ATCCCCCACAGTCACAACGG 62.125 60.000 0.00 0.00 0.00 4.44
2492 2997 2.508928 CCCCACAGTCACAACGGT 59.491 61.111 0.00 0.00 33.83 4.83
2493 2998 1.749665 CCCCACAGTCACAACGGTA 59.250 57.895 0.00 0.00 32.21 4.02
2494 2999 0.320421 CCCCACAGTCACAACGGTAG 60.320 60.000 0.00 0.00 32.21 3.18
2495 3000 0.949105 CCCACAGTCACAACGGTAGC 60.949 60.000 0.00 0.00 32.21 3.58
2496 3001 1.282248 CCACAGTCACAACGGTAGCG 61.282 60.000 13.69 13.69 32.21 4.26
2497 3002 0.318360 CACAGTCACAACGGTAGCGA 60.318 55.000 22.88 0.00 32.21 4.93
2498 3003 0.318445 ACAGTCACAACGGTAGCGAC 60.318 55.000 22.88 8.20 31.64 5.19
2499 3004 1.081641 AGTCACAACGGTAGCGACG 60.082 57.895 22.88 13.36 37.36 5.12
2500 3005 2.429571 TCACAACGGTAGCGACGC 60.430 61.111 22.88 13.03 34.00 5.19
2501 3006 2.731721 CACAACGGTAGCGACGCA 60.732 61.111 23.70 5.17 34.00 5.24
2502 3007 2.430244 ACAACGGTAGCGACGCAG 60.430 61.111 23.70 12.40 34.00 5.18
2503 3008 2.126618 CAACGGTAGCGACGCAGA 60.127 61.111 23.70 6.47 34.00 4.26
2504 3009 2.126580 AACGGTAGCGACGCAGAC 60.127 61.111 23.70 18.49 34.00 3.51
2511 3016 2.101575 GCGACGCAGACGGTGATA 59.898 61.111 16.42 0.00 46.96 2.15
2512 3017 2.222217 GCGACGCAGACGGTGATAC 61.222 63.158 16.42 0.00 46.96 2.24
2513 3018 1.428219 CGACGCAGACGGTGATACT 59.572 57.895 0.00 0.00 46.04 2.12
2514 3019 0.861866 CGACGCAGACGGTGATACTG 60.862 60.000 0.00 0.00 46.04 2.74
2515 3020 0.525668 GACGCAGACGGTGATACTGG 60.526 60.000 0.00 0.00 46.04 4.00
2516 3021 0.963856 ACGCAGACGGTGATACTGGA 60.964 55.000 0.00 0.00 46.04 3.86
2517 3022 0.248661 CGCAGACGGTGATACTGGAG 60.249 60.000 0.00 0.00 34.97 3.86
2518 3023 1.103803 GCAGACGGTGATACTGGAGA 58.896 55.000 0.00 0.00 33.00 3.71
2519 3024 1.476891 GCAGACGGTGATACTGGAGAA 59.523 52.381 0.00 0.00 33.00 2.87
2520 3025 2.480416 GCAGACGGTGATACTGGAGAAG 60.480 54.545 0.00 0.00 33.00 2.85
2521 3026 3.017442 CAGACGGTGATACTGGAGAAGA 58.983 50.000 0.00 0.00 0.00 2.87
2522 3027 3.444034 CAGACGGTGATACTGGAGAAGAA 59.556 47.826 0.00 0.00 0.00 2.52
2523 3028 4.098654 CAGACGGTGATACTGGAGAAGAAT 59.901 45.833 0.00 0.00 0.00 2.40
2524 3029 5.299531 CAGACGGTGATACTGGAGAAGAATA 59.700 44.000 0.00 0.00 0.00 1.75
2525 3030 5.299782 AGACGGTGATACTGGAGAAGAATAC 59.700 44.000 0.00 0.00 0.00 1.89
2526 3031 4.036498 ACGGTGATACTGGAGAAGAATACG 59.964 45.833 0.00 0.00 0.00 3.06
2527 3032 4.275196 CGGTGATACTGGAGAAGAATACGA 59.725 45.833 0.00 0.00 0.00 3.43
2528 3033 5.220989 CGGTGATACTGGAGAAGAATACGAA 60.221 44.000 0.00 0.00 0.00 3.85
2529 3034 6.210078 GGTGATACTGGAGAAGAATACGAAG 58.790 44.000 0.00 0.00 0.00 3.79
2530 3035 6.210078 GTGATACTGGAGAAGAATACGAAGG 58.790 44.000 0.00 0.00 0.00 3.46
2531 3036 3.528597 ACTGGAGAAGAATACGAAGGC 57.471 47.619 0.00 0.00 0.00 4.35
2532 3037 2.832129 ACTGGAGAAGAATACGAAGGCA 59.168 45.455 0.00 0.00 0.00 4.75
2533 3038 3.260884 ACTGGAGAAGAATACGAAGGCAA 59.739 43.478 0.00 0.00 0.00 4.52
2534 3039 3.861840 TGGAGAAGAATACGAAGGCAAG 58.138 45.455 0.00 0.00 0.00 4.01
2535 3040 2.609916 GGAGAAGAATACGAAGGCAAGC 59.390 50.000 0.00 0.00 0.00 4.01
2536 3041 2.609916 GAGAAGAATACGAAGGCAAGCC 59.390 50.000 2.02 2.02 0.00 4.35
2537 3042 2.027192 AGAAGAATACGAAGGCAAGCCA 60.027 45.455 14.40 0.00 38.92 4.75
2538 3043 2.489938 AGAATACGAAGGCAAGCCAA 57.510 45.000 14.40 0.00 38.92 4.52
2539 3044 2.084546 AGAATACGAAGGCAAGCCAAC 58.915 47.619 14.40 5.72 38.92 3.77
2540 3045 0.802494 AATACGAAGGCAAGCCAACG 59.198 50.000 21.40 21.40 40.52 4.10
2541 3046 1.024579 ATACGAAGGCAAGCCAACGG 61.025 55.000 24.65 10.85 39.63 4.44
2542 3047 2.102109 TACGAAGGCAAGCCAACGGA 62.102 55.000 24.65 18.15 39.63 4.69
2543 3048 2.954611 GAAGGCAAGCCAACGGAC 59.045 61.111 14.40 0.00 38.92 4.79
2544 3049 1.896660 GAAGGCAAGCCAACGGACA 60.897 57.895 14.40 0.00 38.92 4.02
2545 3050 2.130073 GAAGGCAAGCCAACGGACAC 62.130 60.000 14.40 0.00 38.92 3.67
2546 3051 3.670377 GGCAAGCCAACGGACACC 61.670 66.667 6.14 0.00 35.81 4.16
2547 3052 3.670377 GCAAGCCAACGGACACCC 61.670 66.667 0.00 0.00 0.00 4.61
2548 3053 2.983592 CAAGCCAACGGACACCCC 60.984 66.667 0.00 0.00 0.00 4.95
2549 3054 4.280019 AAGCCAACGGACACCCCC 62.280 66.667 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 6.873605 AGGGGAAAATGCGAAAAAGATAAAAG 59.126 34.615 0.00 0.00 0.00 2.27
50 52 6.307776 AGTAAAAGGAAAGAAGAAGAAGGGG 58.692 40.000 0.00 0.00 0.00 4.79
51 53 7.825331 AAGTAAAAGGAAAGAAGAAGAAGGG 57.175 36.000 0.00 0.00 0.00 3.95
148 150 8.743085 TGGAAAAATGTCCATGAATTCAAAAA 57.257 26.923 13.09 0.00 42.97 1.94
289 333 9.902196 GAATTTTCAAAATTTCCTTGCATTCAT 57.098 25.926 9.50 0.00 0.00 2.57
525 594 0.704076 ATGTGGCAGGCTTCCCTAAA 59.296 50.000 0.00 0.00 40.33 1.85
528 597 1.609783 GTATGTGGCAGGCTTCCCT 59.390 57.895 0.00 0.00 44.25 4.20
529 598 1.453928 GGTATGTGGCAGGCTTCCC 60.454 63.158 0.00 0.00 0.00 3.97
532 601 1.304282 CCAGGTATGTGGCAGGCTT 59.696 57.895 0.00 0.00 0.00 4.35
656 729 8.047310 AGAATCTCGTACAATGATAGGGTTTTT 58.953 33.333 0.00 0.00 0.00 1.94
657 730 7.565680 AGAATCTCGTACAATGATAGGGTTTT 58.434 34.615 0.00 0.00 0.00 2.43
658 731 7.125792 AGAATCTCGTACAATGATAGGGTTT 57.874 36.000 0.00 0.00 0.00 3.27
659 732 6.323996 TGAGAATCTCGTACAATGATAGGGTT 59.676 38.462 5.73 0.00 34.92 4.11
661 734 6.332735 TGAGAATCTCGTACAATGATAGGG 57.667 41.667 5.73 0.00 34.92 3.53
662 735 8.648557 TTTTGAGAATCTCGTACAATGATAGG 57.351 34.615 5.73 0.00 34.92 2.57
693 768 4.082679 CCTGCGTACATATCCTAGGTCTTC 60.083 50.000 9.08 0.00 0.00 2.87
694 769 3.827302 CCTGCGTACATATCCTAGGTCTT 59.173 47.826 9.08 0.00 0.00 3.01
806 888 0.971959 AAGCCGGGGTACGTATGTGA 60.972 55.000 2.18 0.00 42.24 3.58
876 959 4.086025 CGACTTACTCGATTTGATCTTCGC 60.086 45.833 7.97 0.00 46.14 4.70
912 995 0.672342 ACCCTAATTCGATCGACGGG 59.328 55.000 26.77 26.77 42.82 5.28
952 1040 1.251251 CCAAAGACCAAGGAAGCAGG 58.749 55.000 0.00 0.00 0.00 4.85
1153 1241 2.030562 CTCACCGCCGGTCAAGTT 59.969 61.111 5.41 0.00 31.02 2.66
1192 1280 2.811101 CTCGCCTCCGCTCATCTT 59.189 61.111 0.00 0.00 0.00 2.40
1255 1382 4.796231 GTCCGATGCCACGCGTCT 62.796 66.667 9.86 0.00 41.85 4.18
1261 1388 2.813908 GTCCGTGTCCGATGCCAC 60.814 66.667 0.00 0.00 35.63 5.01
1262 1389 4.429212 CGTCCGTGTCCGATGCCA 62.429 66.667 0.00 0.00 35.63 4.92
1270 1397 4.430765 ATCACCGCCGTCCGTGTC 62.431 66.667 0.00 0.00 34.38 3.67
1271 1398 4.430765 GATCACCGCCGTCCGTGT 62.431 66.667 0.00 0.00 34.38 4.49
1444 1649 0.251386 AGTTGCTCTGTCTCCGGAGA 60.251 55.000 30.49 30.49 45.48 3.71
1585 1804 2.941720 GACGACGACTGTAGTAAGGGAT 59.058 50.000 0.00 0.00 33.81 3.85
1764 2008 7.917505 GGATTGCAAGGAGAGTAAAATAACATG 59.082 37.037 4.94 0.00 0.00 3.21
1779 2023 0.405198 TGCAGGAAGGATTGCAAGGA 59.595 50.000 4.94 0.00 46.42 3.36
1827 2106 1.445871 ACGGTGATCTTAAAACGGGC 58.554 50.000 0.00 0.00 0.00 6.13
1830 2109 3.424433 GGCTCAACGGTGATCTTAAAACG 60.424 47.826 2.20 0.00 31.85 3.60
1937 2240 9.355215 CGACTTGTTAAATCAACATAGACTAGT 57.645 33.333 0.00 0.00 46.38 2.57
1945 2248 5.049680 ACGAAGCGACTTGTTAAATCAACAT 60.050 36.000 0.00 0.00 46.38 2.71
1968 2271 6.920210 GCTGCTCCAAATCAAGGATTATAAAC 59.080 38.462 0.00 0.00 33.99 2.01
2031 2530 3.053291 TTGTGATGGCCGGTTCGC 61.053 61.111 1.90 5.56 0.00 4.70
2088 2590 6.362283 GTCCCATTTGTTGTTTAACTGAATCG 59.638 38.462 0.00 0.00 37.68 3.34
2202 2707 4.563580 GGAGAGGAACTGTATGTGCAAAGA 60.564 45.833 0.00 0.00 41.55 2.52
2203 2708 3.686726 GGAGAGGAACTGTATGTGCAAAG 59.313 47.826 0.00 0.00 41.55 2.77
2204 2709 3.327757 AGGAGAGGAACTGTATGTGCAAA 59.672 43.478 0.00 0.00 41.55 3.68
2205 2710 2.906389 AGGAGAGGAACTGTATGTGCAA 59.094 45.455 0.00 0.00 41.55 4.08
2206 2711 2.497675 GAGGAGAGGAACTGTATGTGCA 59.502 50.000 0.00 0.00 41.55 4.57
2207 2712 2.763448 AGAGGAGAGGAACTGTATGTGC 59.237 50.000 0.00 0.00 41.55 4.57
2208 2713 3.383185 GGAGAGGAGAGGAACTGTATGTG 59.617 52.174 0.00 0.00 41.55 3.21
2209 2714 3.270960 AGGAGAGGAGAGGAACTGTATGT 59.729 47.826 0.00 0.00 41.55 2.29
2210 2715 3.636300 CAGGAGAGGAGAGGAACTGTATG 59.364 52.174 0.00 0.00 41.55 2.39
2211 2716 3.270960 ACAGGAGAGGAGAGGAACTGTAT 59.729 47.826 0.00 0.00 41.55 2.29
2212 2717 2.650322 ACAGGAGAGGAGAGGAACTGTA 59.350 50.000 0.00 0.00 41.55 2.74
2213 2718 1.431243 ACAGGAGAGGAGAGGAACTGT 59.569 52.381 0.00 0.00 41.55 3.55
2214 2719 2.099405 GACAGGAGAGGAGAGGAACTG 58.901 57.143 0.00 0.00 41.55 3.16
2216 2721 1.480789 GGACAGGAGAGGAGAGGAAC 58.519 60.000 0.00 0.00 0.00 3.62
2217 2722 0.336737 GGGACAGGAGAGGAGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
2218 2723 1.585651 GGGGACAGGAGAGGAGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
2219 2724 1.075600 GGGGACAGGAGAGGAGAGG 60.076 68.421 0.00 0.00 0.00 3.69
2220 2725 1.454847 CGGGGACAGGAGAGGAGAG 60.455 68.421 0.00 0.00 0.00 3.20
2221 2726 1.801302 AACGGGGACAGGAGAGGAGA 61.801 60.000 0.00 0.00 0.00 3.71
2222 2727 1.305381 AACGGGGACAGGAGAGGAG 60.305 63.158 0.00 0.00 0.00 3.69
2223 2728 1.305046 GAACGGGGACAGGAGAGGA 60.305 63.158 0.00 0.00 0.00 3.71
2224 2729 2.711922 CGAACGGGGACAGGAGAGG 61.712 68.421 0.00 0.00 0.00 3.69
2225 2730 1.935327 GACGAACGGGGACAGGAGAG 61.935 65.000 0.00 0.00 0.00 3.20
2226 2731 1.975407 GACGAACGGGGACAGGAGA 60.975 63.158 0.00 0.00 0.00 3.71
2227 2732 2.572284 GACGAACGGGGACAGGAG 59.428 66.667 0.00 0.00 0.00 3.69
2228 2733 2.993264 GGACGAACGGGGACAGGA 60.993 66.667 0.00 0.00 0.00 3.86
2229 2734 2.180159 ATTGGACGAACGGGGACAGG 62.180 60.000 0.00 0.00 0.00 4.00
2230 2735 1.019278 CATTGGACGAACGGGGACAG 61.019 60.000 0.00 0.00 0.00 3.51
2231 2736 1.004320 CATTGGACGAACGGGGACA 60.004 57.895 0.00 0.00 0.00 4.02
2232 2737 0.247185 TACATTGGACGAACGGGGAC 59.753 55.000 0.00 0.00 0.00 4.46
2233 2738 0.975135 TTACATTGGACGAACGGGGA 59.025 50.000 0.00 0.00 0.00 4.81
2234 2739 1.810959 TTTACATTGGACGAACGGGG 58.189 50.000 0.00 0.00 0.00 5.73
2235 2740 3.189702 ACAATTTACATTGGACGAACGGG 59.810 43.478 6.56 0.00 43.82 5.28
2236 2741 4.413495 ACAATTTACATTGGACGAACGG 57.587 40.909 6.56 0.00 43.82 4.44
2243 2748 5.417580 GGCCTGAAGTACAATTTACATTGGA 59.582 40.000 6.56 0.00 43.82 3.53
2244 2749 5.184864 TGGCCTGAAGTACAATTTACATTGG 59.815 40.000 3.32 0.00 43.82 3.16
2245 2750 6.266168 TGGCCTGAAGTACAATTTACATTG 57.734 37.500 3.32 0.00 44.90 2.82
2246 2751 6.909550 TTGGCCTGAAGTACAATTTACATT 57.090 33.333 3.32 0.00 0.00 2.71
2247 2752 6.909550 TTTGGCCTGAAGTACAATTTACAT 57.090 33.333 3.32 0.00 0.00 2.29
2248 2753 6.686630 CATTTGGCCTGAAGTACAATTTACA 58.313 36.000 3.32 0.00 0.00 2.41
2249 2754 5.576774 GCATTTGGCCTGAAGTACAATTTAC 59.423 40.000 3.32 0.00 36.11 2.01
2250 2755 5.480073 AGCATTTGGCCTGAAGTACAATTTA 59.520 36.000 3.32 0.00 46.50 1.40
2251 2756 4.284234 AGCATTTGGCCTGAAGTACAATTT 59.716 37.500 3.32 0.00 46.50 1.82
2252 2757 3.834231 AGCATTTGGCCTGAAGTACAATT 59.166 39.130 3.32 0.00 46.50 2.32
2253 2758 3.194116 CAGCATTTGGCCTGAAGTACAAT 59.806 43.478 3.32 0.00 46.50 2.71
2254 2759 2.557924 CAGCATTTGGCCTGAAGTACAA 59.442 45.455 3.32 0.00 46.50 2.41
2255 2760 2.161855 CAGCATTTGGCCTGAAGTACA 58.838 47.619 3.32 0.00 46.50 2.90
2256 2761 2.436417 TCAGCATTTGGCCTGAAGTAC 58.564 47.619 3.32 0.00 46.50 2.73
2257 2762 2.877097 TCAGCATTTGGCCTGAAGTA 57.123 45.000 3.32 0.00 46.50 2.24
2258 2763 1.891150 CTTCAGCATTTGGCCTGAAGT 59.109 47.619 17.76 0.00 44.17 3.01
2259 2764 2.649331 CTTCAGCATTTGGCCTGAAG 57.351 50.000 13.83 13.83 46.50 3.02
2260 2765 0.604578 GCTTCAGCATTTGGCCTGAA 59.395 50.000 3.32 3.22 46.50 3.02
2261 2766 1.252904 GGCTTCAGCATTTGGCCTGA 61.253 55.000 3.32 0.00 46.50 3.86
2262 2767 1.217244 GGCTTCAGCATTTGGCCTG 59.783 57.895 3.32 0.00 46.50 4.85
2263 2768 1.077985 AGGCTTCAGCATTTGGCCT 59.922 52.632 3.32 0.00 46.95 5.19
2264 2769 1.977685 AAGGCTTCAGCATTTGGCC 59.022 52.632 0.00 0.00 42.92 5.36
2270 2775 7.776969 TCAATAAGAAGATAAAGGCTTCAGCAT 59.223 33.333 0.00 0.00 43.19 3.79
2271 2776 7.112122 TCAATAAGAAGATAAAGGCTTCAGCA 58.888 34.615 0.00 0.00 43.19 4.41
2272 2777 7.559590 TCAATAAGAAGATAAAGGCTTCAGC 57.440 36.000 0.00 0.00 43.19 4.26
2273 2778 8.074972 GCATCAATAAGAAGATAAAGGCTTCAG 58.925 37.037 0.00 0.00 43.19 3.02
2274 2779 7.776969 AGCATCAATAAGAAGATAAAGGCTTCA 59.223 33.333 0.00 0.00 43.19 3.02
2275 2780 8.164058 AGCATCAATAAGAAGATAAAGGCTTC 57.836 34.615 0.00 0.00 41.53 3.86
2276 2781 8.530804 AAGCATCAATAAGAAGATAAAGGCTT 57.469 30.769 0.00 0.00 29.97 4.35
2277 2782 8.411683 CAAAGCATCAATAAGAAGATAAAGGCT 58.588 33.333 0.00 0.00 0.00 4.58
2278 2783 8.193438 ACAAAGCATCAATAAGAAGATAAAGGC 58.807 33.333 0.00 0.00 0.00 4.35
2309 2814 8.714906 CCCTCTCTCCCTTCTAATAAACATTAA 58.285 37.037 0.00 0.00 0.00 1.40
2310 2815 8.071854 TCCCTCTCTCCCTTCTAATAAACATTA 58.928 37.037 0.00 0.00 0.00 1.90
2311 2816 6.909158 TCCCTCTCTCCCTTCTAATAAACATT 59.091 38.462 0.00 0.00 0.00 2.71
2312 2817 6.453476 TCCCTCTCTCCCTTCTAATAAACAT 58.547 40.000 0.00 0.00 0.00 2.71
2313 2818 5.850278 TCCCTCTCTCCCTTCTAATAAACA 58.150 41.667 0.00 0.00 0.00 2.83
2314 2819 7.381789 AATCCCTCTCTCCCTTCTAATAAAC 57.618 40.000 0.00 0.00 0.00 2.01
2315 2820 7.406151 ACAAATCCCTCTCTCCCTTCTAATAAA 59.594 37.037 0.00 0.00 0.00 1.40
2316 2821 6.909158 ACAAATCCCTCTCTCCCTTCTAATAA 59.091 38.462 0.00 0.00 0.00 1.40
2317 2822 6.327626 CACAAATCCCTCTCTCCCTTCTAATA 59.672 42.308 0.00 0.00 0.00 0.98
2318 2823 5.131809 CACAAATCCCTCTCTCCCTTCTAAT 59.868 44.000 0.00 0.00 0.00 1.73
2319 2824 4.471386 CACAAATCCCTCTCTCCCTTCTAA 59.529 45.833 0.00 0.00 0.00 2.10
2320 2825 4.033709 CACAAATCCCTCTCTCCCTTCTA 58.966 47.826 0.00 0.00 0.00 2.10
2321 2826 2.843113 CACAAATCCCTCTCTCCCTTCT 59.157 50.000 0.00 0.00 0.00 2.85
2322 2827 2.092699 CCACAAATCCCTCTCTCCCTTC 60.093 54.545 0.00 0.00 0.00 3.46
2323 2828 1.918957 CCACAAATCCCTCTCTCCCTT 59.081 52.381 0.00 0.00 0.00 3.95
2324 2829 1.081174 TCCACAAATCCCTCTCTCCCT 59.919 52.381 0.00 0.00 0.00 4.20
2325 2830 1.584724 TCCACAAATCCCTCTCTCCC 58.415 55.000 0.00 0.00 0.00 4.30
2326 2831 3.941704 ATTCCACAAATCCCTCTCTCC 57.058 47.619 0.00 0.00 0.00 3.71
2327 2832 5.622346 ACTATTCCACAAATCCCTCTCTC 57.378 43.478 0.00 0.00 0.00 3.20
2328 2833 5.395768 CGAACTATTCCACAAATCCCTCTCT 60.396 44.000 0.00 0.00 0.00 3.10
2329 2834 4.811557 CGAACTATTCCACAAATCCCTCTC 59.188 45.833 0.00 0.00 0.00 3.20
2330 2835 4.225267 ACGAACTATTCCACAAATCCCTCT 59.775 41.667 0.00 0.00 0.00 3.69
2331 2836 4.514401 ACGAACTATTCCACAAATCCCTC 58.486 43.478 0.00 0.00 0.00 4.30
2332 2837 4.569719 ACGAACTATTCCACAAATCCCT 57.430 40.909 0.00 0.00 0.00 4.20
2333 2838 4.457949 ACAACGAACTATTCCACAAATCCC 59.542 41.667 0.00 0.00 0.00 3.85
2334 2839 5.622770 ACAACGAACTATTCCACAAATCC 57.377 39.130 0.00 0.00 0.00 3.01
2335 2840 7.218204 GCAATACAACGAACTATTCCACAAATC 59.782 37.037 0.00 0.00 0.00 2.17
2336 2841 7.027161 GCAATACAACGAACTATTCCACAAAT 58.973 34.615 0.00 0.00 0.00 2.32
2337 2842 6.205853 AGCAATACAACGAACTATTCCACAAA 59.794 34.615 0.00 0.00 0.00 2.83
2338 2843 5.703592 AGCAATACAACGAACTATTCCACAA 59.296 36.000 0.00 0.00 0.00 3.33
2339 2844 5.242434 AGCAATACAACGAACTATTCCACA 58.758 37.500 0.00 0.00 0.00 4.17
2340 2845 5.796350 AGCAATACAACGAACTATTCCAC 57.204 39.130 0.00 0.00 0.00 4.02
2341 2846 5.935206 TCAAGCAATACAACGAACTATTCCA 59.065 36.000 0.00 0.00 0.00 3.53
2342 2847 6.417191 TCAAGCAATACAACGAACTATTCC 57.583 37.500 0.00 0.00 0.00 3.01
2343 2848 5.960105 GCTCAAGCAATACAACGAACTATTC 59.040 40.000 0.00 0.00 41.59 1.75
2344 2849 5.163754 GGCTCAAGCAATACAACGAACTATT 60.164 40.000 4.13 0.00 44.36 1.73
2345 2850 4.332819 GGCTCAAGCAATACAACGAACTAT 59.667 41.667 4.13 0.00 44.36 2.12
2346 2851 3.682858 GGCTCAAGCAATACAACGAACTA 59.317 43.478 4.13 0.00 44.36 2.24
2347 2852 2.484264 GGCTCAAGCAATACAACGAACT 59.516 45.455 4.13 0.00 44.36 3.01
2348 2853 2.225491 TGGCTCAAGCAATACAACGAAC 59.775 45.455 4.13 0.00 44.36 3.95
2349 2854 2.225491 GTGGCTCAAGCAATACAACGAA 59.775 45.455 4.13 0.00 44.36 3.85
2350 2855 1.804151 GTGGCTCAAGCAATACAACGA 59.196 47.619 4.13 0.00 44.36 3.85
2351 2856 1.464023 CGTGGCTCAAGCAATACAACG 60.464 52.381 4.13 0.74 44.36 4.10
2352 2857 1.535462 ACGTGGCTCAAGCAATACAAC 59.465 47.619 4.13 0.00 44.36 3.32
2353 2858 1.535028 CACGTGGCTCAAGCAATACAA 59.465 47.619 7.95 0.00 44.36 2.41
2354 2859 1.155889 CACGTGGCTCAAGCAATACA 58.844 50.000 7.95 0.00 44.36 2.29
2355 2860 0.447801 CCACGTGGCTCAAGCAATAC 59.552 55.000 24.02 0.00 44.36 1.89
2356 2861 0.676466 CCCACGTGGCTCAAGCAATA 60.676 55.000 29.75 0.00 44.36 1.90
2357 2862 1.973281 CCCACGTGGCTCAAGCAAT 60.973 57.895 29.75 0.00 44.36 3.56
2358 2863 2.594303 CCCACGTGGCTCAAGCAA 60.594 61.111 29.75 0.00 44.36 3.91
2367 2872 5.808366 ATCCTATATATATGCCCACGTGG 57.192 43.478 28.26 28.26 37.09 4.94
2368 2873 7.722363 TGTAATCCTATATATATGCCCACGTG 58.278 38.462 9.08 9.08 0.00 4.49
2369 2874 7.907841 TGTAATCCTATATATATGCCCACGT 57.092 36.000 5.44 0.00 0.00 4.49
2370 2875 9.424319 GATTGTAATCCTATATATATGCCCACG 57.576 37.037 5.44 0.00 0.00 4.94
2383 2888 9.386122 ACTCCAAGTAGATGATTGTAATCCTAT 57.614 33.333 2.41 0.00 34.50 2.57
2384 2889 8.783660 ACTCCAAGTAGATGATTGTAATCCTA 57.216 34.615 2.41 0.00 34.50 2.94
2385 2890 7.682787 ACTCCAAGTAGATGATTGTAATCCT 57.317 36.000 2.41 0.00 34.50 3.24
2386 2891 8.421784 TGTACTCCAAGTAGATGATTGTAATCC 58.578 37.037 2.41 0.00 31.05 3.01
2387 2892 9.817809 TTGTACTCCAAGTAGATGATTGTAATC 57.182 33.333 0.00 0.00 30.12 1.75
2388 2893 9.823647 CTTGTACTCCAAGTAGATGATTGTAAT 57.176 33.333 0.00 0.00 44.64 1.89
2403 2908 2.703536 TCTGGCTTGTCTTGTACTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
2404 2909 2.325484 TCTGGCTTGTCTTGTACTCCA 58.675 47.619 0.00 0.00 0.00 3.86
2405 2910 3.067833 GTTCTGGCTTGTCTTGTACTCC 58.932 50.000 0.00 0.00 0.00 3.85
2406 2911 3.728845 TGTTCTGGCTTGTCTTGTACTC 58.271 45.455 0.00 0.00 0.00 2.59
2407 2912 3.838244 TGTTCTGGCTTGTCTTGTACT 57.162 42.857 0.00 0.00 0.00 2.73
2408 2913 4.893424 TTTGTTCTGGCTTGTCTTGTAC 57.107 40.909 0.00 0.00 0.00 2.90
2409 2914 4.518970 GGATTTGTTCTGGCTTGTCTTGTA 59.481 41.667 0.00 0.00 0.00 2.41
2410 2915 3.319122 GGATTTGTTCTGGCTTGTCTTGT 59.681 43.478 0.00 0.00 0.00 3.16
2411 2916 3.571401 AGGATTTGTTCTGGCTTGTCTTG 59.429 43.478 0.00 0.00 0.00 3.02
2412 2917 3.837355 AGGATTTGTTCTGGCTTGTCTT 58.163 40.909 0.00 0.00 0.00 3.01
2413 2918 3.515602 AGGATTTGTTCTGGCTTGTCT 57.484 42.857 0.00 0.00 0.00 3.41
2414 2919 4.327680 ACTAGGATTTGTTCTGGCTTGTC 58.672 43.478 0.00 0.00 0.00 3.18
2415 2920 4.327680 GACTAGGATTTGTTCTGGCTTGT 58.672 43.478 0.00 0.00 0.00 3.16
2416 2921 3.691609 GGACTAGGATTTGTTCTGGCTTG 59.308 47.826 0.00 0.00 0.00 4.01
2417 2922 3.330701 TGGACTAGGATTTGTTCTGGCTT 59.669 43.478 0.00 0.00 0.00 4.35
2418 2923 2.912956 TGGACTAGGATTTGTTCTGGCT 59.087 45.455 0.00 0.00 0.00 4.75
2419 2924 3.350219 TGGACTAGGATTTGTTCTGGC 57.650 47.619 0.00 0.00 0.00 4.85
2420 2925 5.363939 GAGATGGACTAGGATTTGTTCTGG 58.636 45.833 0.00 0.00 0.00 3.86
2421 2926 5.046529 CGAGATGGACTAGGATTTGTTCTG 58.953 45.833 0.00 0.00 0.00 3.02
2422 2927 4.712337 ACGAGATGGACTAGGATTTGTTCT 59.288 41.667 0.00 0.00 0.00 3.01
2423 2928 5.012328 ACGAGATGGACTAGGATTTGTTC 57.988 43.478 0.00 0.00 0.00 3.18
2424 2929 4.712337 AGACGAGATGGACTAGGATTTGTT 59.288 41.667 0.00 0.00 0.00 2.83
2425 2930 4.282496 AGACGAGATGGACTAGGATTTGT 58.718 43.478 0.00 0.00 0.00 2.83
2426 2931 4.927978 AGACGAGATGGACTAGGATTTG 57.072 45.455 0.00 0.00 0.00 2.32
2427 2932 5.163395 GGAAAGACGAGATGGACTAGGATTT 60.163 44.000 0.00 0.00 0.00 2.17
2428 2933 4.342665 GGAAAGACGAGATGGACTAGGATT 59.657 45.833 0.00 0.00 0.00 3.01
2429 2934 3.892588 GGAAAGACGAGATGGACTAGGAT 59.107 47.826 0.00 0.00 0.00 3.24
2430 2935 3.053544 AGGAAAGACGAGATGGACTAGGA 60.054 47.826 0.00 0.00 0.00 2.94
2431 2936 3.292460 AGGAAAGACGAGATGGACTAGG 58.708 50.000 0.00 0.00 0.00 3.02
2432 2937 6.642707 ATTAGGAAAGACGAGATGGACTAG 57.357 41.667 0.00 0.00 0.00 2.57
2433 2938 8.411683 GTTTATTAGGAAAGACGAGATGGACTA 58.588 37.037 0.00 0.00 0.00 2.59
2434 2939 7.093465 TGTTTATTAGGAAAGACGAGATGGACT 60.093 37.037 0.00 0.00 0.00 3.85
2435 2940 7.039882 TGTTTATTAGGAAAGACGAGATGGAC 58.960 38.462 0.00 0.00 0.00 4.02
2436 2941 7.177832 TGTTTATTAGGAAAGACGAGATGGA 57.822 36.000 0.00 0.00 0.00 3.41
2437 2942 8.438676 AATGTTTATTAGGAAAGACGAGATGG 57.561 34.615 0.00 0.00 0.00 3.51
2452 2957 9.802039 GGGGGATGTTGAGTATAATGTTTATTA 57.198 33.333 0.00 0.00 33.54 0.98
2453 2958 8.285891 TGGGGGATGTTGAGTATAATGTTTATT 58.714 33.333 0.00 0.00 0.00 1.40
2454 2959 7.724061 GTGGGGGATGTTGAGTATAATGTTTAT 59.276 37.037 0.00 0.00 0.00 1.40
2455 2960 7.057894 GTGGGGGATGTTGAGTATAATGTTTA 58.942 38.462 0.00 0.00 0.00 2.01
2456 2961 5.891551 GTGGGGGATGTTGAGTATAATGTTT 59.108 40.000 0.00 0.00 0.00 2.83
2457 2962 5.044476 TGTGGGGGATGTTGAGTATAATGTT 60.044 40.000 0.00 0.00 0.00 2.71
2458 2963 4.476846 TGTGGGGGATGTTGAGTATAATGT 59.523 41.667 0.00 0.00 0.00 2.71
2459 2964 5.047566 TGTGGGGGATGTTGAGTATAATG 57.952 43.478 0.00 0.00 0.00 1.90
2460 2965 4.726825 ACTGTGGGGGATGTTGAGTATAAT 59.273 41.667 0.00 0.00 0.00 1.28
2461 2966 4.108570 ACTGTGGGGGATGTTGAGTATAA 58.891 43.478 0.00 0.00 0.00 0.98
2462 2967 3.709653 GACTGTGGGGGATGTTGAGTATA 59.290 47.826 0.00 0.00 0.00 1.47
2463 2968 2.505819 GACTGTGGGGGATGTTGAGTAT 59.494 50.000 0.00 0.00 0.00 2.12
2464 2969 1.906574 GACTGTGGGGGATGTTGAGTA 59.093 52.381 0.00 0.00 0.00 2.59
2465 2970 0.693049 GACTGTGGGGGATGTTGAGT 59.307 55.000 0.00 0.00 0.00 3.41
2466 2971 0.692476 TGACTGTGGGGGATGTTGAG 59.308 55.000 0.00 0.00 0.00 3.02
2467 2972 0.400213 GTGACTGTGGGGGATGTTGA 59.600 55.000 0.00 0.00 0.00 3.18
2468 2973 0.110295 TGTGACTGTGGGGGATGTTG 59.890 55.000 0.00 0.00 0.00 3.33
2469 2974 0.850100 TTGTGACTGTGGGGGATGTT 59.150 50.000 0.00 0.00 0.00 2.71
2470 2975 0.110486 GTTGTGACTGTGGGGGATGT 59.890 55.000 0.00 0.00 0.00 3.06
2471 2976 0.955428 CGTTGTGACTGTGGGGGATG 60.955 60.000 0.00 0.00 0.00 3.51
2472 2977 1.374947 CGTTGTGACTGTGGGGGAT 59.625 57.895 0.00 0.00 0.00 3.85
2473 2978 2.813726 CCGTTGTGACTGTGGGGGA 61.814 63.158 0.00 0.00 0.00 4.81
2474 2979 1.760479 TACCGTTGTGACTGTGGGGG 61.760 60.000 0.00 0.00 0.00 5.40
2475 2980 0.320421 CTACCGTTGTGACTGTGGGG 60.320 60.000 0.00 0.00 0.00 4.96
2476 2981 0.949105 GCTACCGTTGTGACTGTGGG 60.949 60.000 0.00 0.00 0.00 4.61
2477 2982 1.282248 CGCTACCGTTGTGACTGTGG 61.282 60.000 0.00 0.00 0.00 4.17
2478 2983 0.318360 TCGCTACCGTTGTGACTGTG 60.318 55.000 0.00 0.00 35.54 3.66
2479 2984 0.318445 GTCGCTACCGTTGTGACTGT 60.318 55.000 16.36 0.00 40.54 3.55
2480 2985 1.334992 CGTCGCTACCGTTGTGACTG 61.335 60.000 19.68 12.04 41.26 3.51
2481 2986 1.081641 CGTCGCTACCGTTGTGACT 60.082 57.895 19.68 0.00 41.26 3.41
2482 2987 2.713894 GCGTCGCTACCGTTGTGAC 61.714 63.158 10.68 14.36 40.38 3.67
2483 2988 2.429571 GCGTCGCTACCGTTGTGA 60.430 61.111 10.68 0.00 35.54 3.58
2484 2989 2.716828 CTGCGTCGCTACCGTTGTG 61.717 63.158 19.50 0.00 35.54 3.33
2485 2990 2.430244 CTGCGTCGCTACCGTTGT 60.430 61.111 19.50 0.00 35.54 3.32
2486 2991 2.126618 TCTGCGTCGCTACCGTTG 60.127 61.111 19.50 0.42 35.54 4.10
2487 2992 2.126580 GTCTGCGTCGCTACCGTT 60.127 61.111 19.50 0.00 35.54 4.44
2488 2993 4.456253 CGTCTGCGTCGCTACCGT 62.456 66.667 19.50 0.00 35.54 4.83
2490 2995 4.112341 ACCGTCTGCGTCGCTACC 62.112 66.667 19.50 4.72 36.15 3.18
2491 2996 2.594119 ATCACCGTCTGCGTCGCTAC 62.594 60.000 19.50 15.00 36.15 3.58
2492 2997 1.091197 TATCACCGTCTGCGTCGCTA 61.091 55.000 19.50 3.59 36.15 4.26
2493 2998 2.404186 TATCACCGTCTGCGTCGCT 61.404 57.895 19.50 0.00 36.15 4.93
2494 2999 2.101575 TATCACCGTCTGCGTCGC 59.898 61.111 11.10 11.10 36.15 5.19
2495 3000 0.861866 CAGTATCACCGTCTGCGTCG 60.862 60.000 0.00 0.00 36.15 5.12
2496 3001 0.525668 CCAGTATCACCGTCTGCGTC 60.526 60.000 0.00 0.00 36.15 5.19
2497 3002 0.963856 TCCAGTATCACCGTCTGCGT 60.964 55.000 0.00 0.00 36.15 5.24
2498 3003 0.248661 CTCCAGTATCACCGTCTGCG 60.249 60.000 0.00 0.00 37.95 5.18
2499 3004 1.103803 TCTCCAGTATCACCGTCTGC 58.896 55.000 0.00 0.00 0.00 4.26
2500 3005 3.017442 TCTTCTCCAGTATCACCGTCTG 58.983 50.000 0.00 0.00 0.00 3.51
2501 3006 3.367646 TCTTCTCCAGTATCACCGTCT 57.632 47.619 0.00 0.00 0.00 4.18
2502 3007 4.657436 ATTCTTCTCCAGTATCACCGTC 57.343 45.455 0.00 0.00 0.00 4.79
2503 3008 4.036498 CGTATTCTTCTCCAGTATCACCGT 59.964 45.833 0.00 0.00 0.00 4.83
2504 3009 4.275196 TCGTATTCTTCTCCAGTATCACCG 59.725 45.833 0.00 0.00 0.00 4.94
2505 3010 5.769484 TCGTATTCTTCTCCAGTATCACC 57.231 43.478 0.00 0.00 0.00 4.02
2506 3011 6.210078 CCTTCGTATTCTTCTCCAGTATCAC 58.790 44.000 0.00 0.00 0.00 3.06
2507 3012 5.221263 GCCTTCGTATTCTTCTCCAGTATCA 60.221 44.000 0.00 0.00 0.00 2.15
2508 3013 5.221263 TGCCTTCGTATTCTTCTCCAGTATC 60.221 44.000 0.00 0.00 0.00 2.24
2509 3014 4.649674 TGCCTTCGTATTCTTCTCCAGTAT 59.350 41.667 0.00 0.00 0.00 2.12
2510 3015 4.021229 TGCCTTCGTATTCTTCTCCAGTA 58.979 43.478 0.00 0.00 0.00 2.74
2511 3016 2.832129 TGCCTTCGTATTCTTCTCCAGT 59.168 45.455 0.00 0.00 0.00 4.00
2512 3017 3.526931 TGCCTTCGTATTCTTCTCCAG 57.473 47.619 0.00 0.00 0.00 3.86
2513 3018 3.861840 CTTGCCTTCGTATTCTTCTCCA 58.138 45.455 0.00 0.00 0.00 3.86
2514 3019 2.609916 GCTTGCCTTCGTATTCTTCTCC 59.390 50.000 0.00 0.00 0.00 3.71
2515 3020 2.609916 GGCTTGCCTTCGTATTCTTCTC 59.390 50.000 4.11 0.00 0.00 2.87
2516 3021 2.027192 TGGCTTGCCTTCGTATTCTTCT 60.027 45.455 13.18 0.00 0.00 2.85
2517 3022 2.356135 TGGCTTGCCTTCGTATTCTTC 58.644 47.619 13.18 0.00 0.00 2.87
2518 3023 2.488153 GTTGGCTTGCCTTCGTATTCTT 59.512 45.455 13.18 0.00 0.00 2.52
2519 3024 2.084546 GTTGGCTTGCCTTCGTATTCT 58.915 47.619 13.18 0.00 0.00 2.40
2520 3025 1.202031 CGTTGGCTTGCCTTCGTATTC 60.202 52.381 13.18 0.00 0.00 1.75
2521 3026 0.802494 CGTTGGCTTGCCTTCGTATT 59.198 50.000 13.18 0.00 0.00 1.89
2522 3027 1.024579 CCGTTGGCTTGCCTTCGTAT 61.025 55.000 13.18 0.00 0.00 3.06
2523 3028 1.669760 CCGTTGGCTTGCCTTCGTA 60.670 57.895 13.18 0.00 0.00 3.43
2524 3029 2.978010 CCGTTGGCTTGCCTTCGT 60.978 61.111 13.18 0.00 0.00 3.85
2525 3030 2.668212 TCCGTTGGCTTGCCTTCG 60.668 61.111 13.18 15.32 0.00 3.79
2526 3031 1.896660 TGTCCGTTGGCTTGCCTTC 60.897 57.895 13.18 5.10 0.00 3.46
2527 3032 2.193536 GTGTCCGTTGGCTTGCCTT 61.194 57.895 13.18 0.00 0.00 4.35
2528 3033 2.594592 GTGTCCGTTGGCTTGCCT 60.595 61.111 13.18 0.00 0.00 4.75
2529 3034 3.670377 GGTGTCCGTTGGCTTGCC 61.670 66.667 4.43 4.43 0.00 4.52
2530 3035 3.670377 GGGTGTCCGTTGGCTTGC 61.670 66.667 0.00 0.00 0.00 4.01
2531 3036 2.983592 GGGGTGTCCGTTGGCTTG 60.984 66.667 0.00 0.00 0.00 4.01
2532 3037 4.280019 GGGGGTGTCCGTTGGCTT 62.280 66.667 0.00 0.00 36.01 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.