Multiple sequence alignment - TraesCS2A01G265200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G265200 chr2A 100.000 3293 0 0 1 3293 421220333 421223625 0.000000e+00 6082.0
1 TraesCS2A01G265200 chr2A 95.887 778 29 3 2514 3290 535400064 535400839 0.000000e+00 1256.0
2 TraesCS2A01G265200 chr2D 92.440 1746 96 17 801 2519 314342569 314340833 0.000000e+00 2460.0
3 TraesCS2A01G265200 chr2D 93.515 478 30 1 4 481 314353411 314352935 0.000000e+00 710.0
4 TraesCS2A01G265200 chr2D 92.836 335 14 5 478 811 314344095 314343770 8.270000e-131 477.0
5 TraesCS2A01G265200 chr2B 95.975 795 32 0 1436 2230 382582238 382581444 0.000000e+00 1291.0
6 TraesCS2A01G265200 chr2B 92.254 710 33 5 3 711 382583558 382582870 0.000000e+00 987.0
7 TraesCS2A01G265200 chr2B 87.403 643 47 21 762 1387 382582871 382582246 0.000000e+00 708.0
8 TraesCS2A01G265200 chr2B 84.746 59 7 2 2338 2395 158301045 158300988 1.280000e-04 58.4
9 TraesCS2A01G265200 chrUn 96.762 772 24 1 2519 3290 81780854 81781624 0.000000e+00 1286.0
10 TraesCS2A01G265200 chr3A 96.401 778 27 1 2516 3293 181139476 181138700 0.000000e+00 1280.0
11 TraesCS2A01G265200 chr7A 96.745 768 23 2 2524 3290 42970005 42970771 0.000000e+00 1279.0
12 TraesCS2A01G265200 chr7A 96.512 774 25 2 2520 3293 130300858 130300087 0.000000e+00 1279.0
13 TraesCS2A01G265200 chr7A 96.258 775 27 2 2516 3290 678753472 678754244 0.000000e+00 1269.0
14 TraesCS2A01G265200 chr5A 96.628 771 24 2 2520 3290 426266463 426267231 0.000000e+00 1279.0
15 TraesCS2A01G265200 chr1A 96.368 771 26 2 2520 3290 317819017 317819785 0.000000e+00 1267.0
16 TraesCS2A01G265200 chr1A 96.124 774 30 0 2520 3293 577832496 577831723 0.000000e+00 1264.0
17 TraesCS2A01G265200 chr3B 77.283 427 78 14 1510 1922 499190063 499189642 1.980000e-57 233.0
18 TraesCS2A01G265200 chr5D 92.500 40 3 0 2367 2406 565199523 565199562 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G265200 chr2A 421220333 421223625 3292 False 6082.000000 6082 100.000000 1 3293 1 chr2A.!!$F1 3292
1 TraesCS2A01G265200 chr2A 535400064 535400839 775 False 1256.000000 1256 95.887000 2514 3290 1 chr2A.!!$F2 776
2 TraesCS2A01G265200 chr2D 314340833 314344095 3262 True 1468.500000 2460 92.638000 478 2519 2 chr2D.!!$R2 2041
3 TraesCS2A01G265200 chr2B 382581444 382583558 2114 True 995.333333 1291 91.877333 3 2230 3 chr2B.!!$R2 2227
4 TraesCS2A01G265200 chrUn 81780854 81781624 770 False 1286.000000 1286 96.762000 2519 3290 1 chrUn.!!$F1 771
5 TraesCS2A01G265200 chr3A 181138700 181139476 776 True 1280.000000 1280 96.401000 2516 3293 1 chr3A.!!$R1 777
6 TraesCS2A01G265200 chr7A 42970005 42970771 766 False 1279.000000 1279 96.745000 2524 3290 1 chr7A.!!$F1 766
7 TraesCS2A01G265200 chr7A 130300087 130300858 771 True 1279.000000 1279 96.512000 2520 3293 1 chr7A.!!$R1 773
8 TraesCS2A01G265200 chr7A 678753472 678754244 772 False 1269.000000 1269 96.258000 2516 3290 1 chr7A.!!$F2 774
9 TraesCS2A01G265200 chr5A 426266463 426267231 768 False 1279.000000 1279 96.628000 2520 3290 1 chr5A.!!$F1 770
10 TraesCS2A01G265200 chr1A 317819017 317819785 768 False 1267.000000 1267 96.368000 2520 3290 1 chr1A.!!$F1 770
11 TraesCS2A01G265200 chr1A 577831723 577832496 773 True 1264.000000 1264 96.124000 2520 3293 1 chr1A.!!$R1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 1.003116 CATAATCTCTTGTGCCGCAGC 60.003 52.381 0.0 0.0 40.48 5.25 F
1240 2494 1.002868 CCACTTCAGAGCCACCTGG 60.003 63.158 0.0 0.0 34.99 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 2651 0.101399 CGTCTCGTCTTCCTCCATGG 59.899 60.0 4.97 4.97 37.1 3.66 R
2645 3900 0.105964 TGAGAAGGATCGGGAGGGAG 60.106 60.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.125093 TCAGATGTTCACCCCACGGT 61.125 55.000 0.00 0.00 46.31 4.83
59 60 2.034066 CCCACGGTGCAAGATGGT 59.966 61.111 1.68 0.00 0.00 3.55
105 106 2.675844 TCATTTTCGTTCGCCCTACATG 59.324 45.455 0.00 0.00 0.00 3.21
159 160 4.202151 CCATATTTGGCCCTGTTTAGCTTC 60.202 45.833 0.00 0.00 35.85 3.86
161 162 2.603075 TTGGCCCTGTTTAGCTTCAT 57.397 45.000 0.00 0.00 0.00 2.57
175 176 6.727824 TTAGCTTCATGCAAACTTAGAGTC 57.272 37.500 0.00 0.00 45.94 3.36
196 197 8.188139 AGAGTCGTTAAAATGTTTGTGAATTGT 58.812 29.630 0.00 0.00 0.00 2.71
268 269 5.065988 AGTTTATCAAGCGTGACAGTTGTTT 59.934 36.000 3.91 0.00 36.31 2.83
281 282 1.603802 AGTTGTTTGGTGTCTGATGCG 59.396 47.619 0.00 0.00 0.00 4.73
289 290 1.337823 GGTGTCTGATGCGTGTAAGGT 60.338 52.381 0.00 0.00 0.00 3.50
302 303 4.606961 CGTGTAAGGTGATTTGTGCTTTT 58.393 39.130 0.00 0.00 0.00 2.27
317 318 2.606725 TGCTTTTCCAAATGCGTGTTTG 59.393 40.909 7.42 7.42 40.68 2.93
321 322 4.640789 TTTCCAAATGCGTGTTTGTACT 57.359 36.364 11.75 0.00 37.37 2.73
324 325 5.098218 TCCAAATGCGTGTTTGTACTTAC 57.902 39.130 11.75 0.00 37.37 2.34
333 334 5.595993 CGTGTTTGTACTTACGTGATCTTG 58.404 41.667 0.00 0.00 0.00 3.02
335 336 6.360414 CGTGTTTGTACTTACGTGATCTTGTA 59.640 38.462 0.00 0.00 0.00 2.41
345 346 8.932791 ACTTACGTGATCTTGTATTTTTAGTGG 58.067 33.333 0.00 0.00 0.00 4.00
353 354 7.202016 TCTTGTATTTTTAGTGGTTGCTCTG 57.798 36.000 0.00 0.00 0.00 3.35
376 377 2.286294 GTCATAATCTCTTGTGCCGCAG 59.714 50.000 0.00 0.00 0.00 5.18
377 378 1.003116 CATAATCTCTTGTGCCGCAGC 60.003 52.381 0.00 0.00 40.48 5.25
448 449 9.859692 GTTGTGTACTGAATAACTTTACACTTC 57.140 33.333 10.57 2.27 41.96 3.01
457 458 4.568152 AACTTTACACTTCGCATGCTTT 57.432 36.364 17.13 0.00 0.00 3.51
650 652 4.536090 ACATTTCCTTGGGAGACATCTACA 59.464 41.667 0.00 0.00 31.21 2.74
651 653 5.192522 ACATTTCCTTGGGAGACATCTACAT 59.807 40.000 0.00 0.00 31.21 2.29
652 654 5.359194 TTTCCTTGGGAGACATCTACATC 57.641 43.478 0.00 0.00 31.21 3.06
653 655 4.271807 TCCTTGGGAGACATCTACATCT 57.728 45.455 0.00 0.00 0.00 2.90
654 656 5.403558 TCCTTGGGAGACATCTACATCTA 57.596 43.478 0.00 0.00 0.00 1.98
655 657 5.141182 TCCTTGGGAGACATCTACATCTAC 58.859 45.833 0.00 0.00 0.00 2.59
664 666 6.071984 AGACATCTACATCTACGGAGGAATT 58.928 40.000 0.00 0.00 0.00 2.17
711 714 4.115516 CGACACACATGGAGGAATCTTAG 58.884 47.826 0.00 0.00 0.00 2.18
756 759 4.746535 TTCCTTGTATATTCTCCGTGCA 57.253 40.909 0.00 0.00 0.00 4.57
824 2038 1.143277 TCAAGGAACCCGTTTTGGCTA 59.857 47.619 0.00 0.00 35.87 3.93
1007 2237 1.760192 AGAAGATCTGGCATGCCAAC 58.240 50.000 37.47 28.92 46.63 3.77
1079 2309 2.724349 GCAATCGAAGCCAATCATCAC 58.276 47.619 2.05 0.00 0.00 3.06
1232 2486 2.555199 CCGCCTAATTCCACTTCAGAG 58.445 52.381 0.00 0.00 0.00 3.35
1238 2492 1.366319 ATTCCACTTCAGAGCCACCT 58.634 50.000 0.00 0.00 0.00 4.00
1240 2494 1.002868 CCACTTCAGAGCCACCTGG 60.003 63.158 0.00 0.00 34.99 4.45
1248 2502 1.008403 AGAGCCACCTGGACCTACTA 58.992 55.000 0.00 0.00 37.39 1.82
1250 2504 2.789992 AGAGCCACCTGGACCTACTATA 59.210 50.000 0.00 0.00 37.39 1.31
1269 2523 1.120530 ACCAGACGGTGACAGAAGTT 58.879 50.000 0.00 0.00 46.79 2.66
1316 2570 1.301716 CCACGTCCCAACACCAGAG 60.302 63.158 0.00 0.00 0.00 3.35
1397 2651 3.604202 CGACGGCGCATACGTGAC 61.604 66.667 14.79 1.09 45.68 3.67
1398 2652 3.252484 GACGGCGCATACGTGACC 61.252 66.667 14.79 0.00 45.68 4.02
1400 2654 2.584970 CGGCGCATACGTGACCAT 60.585 61.111 10.83 0.00 42.83 3.55
1410 2664 0.608640 ACGTGACCATGGAGGAAGAC 59.391 55.000 21.47 4.27 41.22 3.01
1442 2696 5.353678 CACCAGCCAAGAATAAGAAGAAGAG 59.646 44.000 0.00 0.00 0.00 2.85
1443 2697 4.880696 CCAGCCAAGAATAAGAAGAAGAGG 59.119 45.833 0.00 0.00 0.00 3.69
1444 2698 5.338708 CCAGCCAAGAATAAGAAGAAGAGGA 60.339 44.000 0.00 0.00 0.00 3.71
1450 2704 8.317679 CCAAGAATAAGAAGAAGAGGAAGAAGA 58.682 37.037 0.00 0.00 0.00 2.87
1451 2705 9.150348 CAAGAATAAGAAGAAGAGGAAGAAGAC 57.850 37.037 0.00 0.00 0.00 3.01
1453 2707 7.394923 AGAATAAGAAGAAGAGGAAGAAGACGA 59.605 37.037 0.00 0.00 0.00 4.20
1455 2709 5.993748 AGAAGAAGAGGAAGAAGACGAAT 57.006 39.130 0.00 0.00 0.00 3.34
1589 2843 1.487482 CAGTTCGTCTGCGTCAAGAA 58.513 50.000 0.00 0.00 37.36 2.52
1626 2880 1.671379 GGACCTCAACCAGAACCGC 60.671 63.158 0.00 0.00 0.00 5.68
1657 2911 3.918220 GCAAGCGCGTCTCCATCG 61.918 66.667 8.43 0.00 0.00 3.84
1716 2970 1.279271 ACCTACCTTGTCCATGAGTGC 59.721 52.381 0.00 0.00 0.00 4.40
1770 3024 2.861006 GGCAACGAGTTCGGCTTC 59.139 61.111 6.48 0.00 44.95 3.86
1867 3121 1.009829 GCAGATCCATGTTGACGTCC 58.990 55.000 14.12 0.00 0.00 4.79
1887 3141 4.308458 CTGTGGGCGTTCCGGTCA 62.308 66.667 0.00 0.00 38.76 4.02
1921 3175 3.884774 AGCCCAAGTTGCCCGACA 61.885 61.111 0.00 0.00 0.00 4.35
1955 3209 3.053849 GACTCGACGGACTCCAGGC 62.054 68.421 0.00 0.00 0.00 4.85
2000 3254 4.381079 CCTTCTCCTTCTCTTCCAAGTACG 60.381 50.000 0.00 0.00 0.00 3.67
2039 3293 3.691342 CCACCACGCCGAGGAAGA 61.691 66.667 7.79 0.00 0.00 2.87
2043 3297 0.179040 ACCACGCCGAGGAAGAAAAA 60.179 50.000 7.79 0.00 0.00 1.94
2119 3373 0.389948 ACAAGACAACCTCGCGGATC 60.390 55.000 6.13 0.00 0.00 3.36
2243 3497 3.146066 TCCGTTCCAAAACAGATCCTTG 58.854 45.455 0.00 0.00 34.93 3.61
2257 3511 4.154918 CAGATCCTTGCTTGTTAGGACAAC 59.845 45.833 0.00 0.00 43.05 3.32
2271 3525 7.007723 TGTTAGGACAACATTTTGACCCTAAT 58.992 34.615 21.37 5.98 45.59 1.73
2278 3532 9.758651 GACAACATTTTGACCCTAATTTTACTT 57.241 29.630 0.00 0.00 36.48 2.24
2321 3575 5.223382 CGTACCTTGCTACAGATTATGAGG 58.777 45.833 0.00 0.00 0.00 3.86
2322 3576 5.221263 CGTACCTTGCTACAGATTATGAGGT 60.221 44.000 0.00 0.00 39.44 3.85
2323 3577 6.016527 CGTACCTTGCTACAGATTATGAGGTA 60.017 42.308 0.00 0.00 37.45 3.08
2326 3581 7.275920 ACCTTGCTACAGATTATGAGGTAAAG 58.724 38.462 0.00 0.00 34.68 1.85
2352 3607 7.828712 AGAAATACTTTACTACTCTGCTTCGT 58.171 34.615 0.00 0.00 0.00 3.85
2358 3613 1.478510 ACTACTCTGCTTCGTCCCATG 59.521 52.381 0.00 0.00 0.00 3.66
2378 3633 7.833682 TCCCATGATATAAGAGCTTGAAAAACA 59.166 33.333 0.00 0.00 0.00 2.83
2513 3768 9.998106 GTTCTTGGAGGCATACTTTTATATAGA 57.002 33.333 0.00 0.00 0.00 1.98
2591 3846 7.504238 ACATTTTGTGTGGTGTATAAGAGGAAA 59.496 33.333 0.00 0.00 40.28 3.13
2603 3858 0.846693 AGAGGAAAAGCCCACACACT 59.153 50.000 0.00 0.00 37.37 3.55
2645 3900 1.285950 GCCCACACGCCTCTTTTTC 59.714 57.895 0.00 0.00 0.00 2.29
2659 3914 1.840635 CTTTTTCTCCCTCCCGATCCT 59.159 52.381 0.00 0.00 0.00 3.24
2674 3929 2.434658 ATCCTTCTCACACGCGTGCA 62.435 55.000 37.35 23.57 43.28 4.57
3131 4386 4.464951 TCGGTAAAAGAGAGTTGCCATCTA 59.535 41.667 0.00 0.00 30.74 1.98
3290 4545 2.360475 GCTTGGGTGTGGGAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.867746 GCTGTCGCATTTCACAGACA 59.132 50.000 4.04 0.00 42.37 3.41
28 29 0.321671 CGTGGGGTGAACATCTGAGT 59.678 55.000 0.00 0.00 0.00 3.41
49 50 0.038166 GGAACCCTCACCATCTTGCA 59.962 55.000 0.00 0.00 0.00 4.08
59 60 4.346730 TCTACTTTGATACGGAACCCTCA 58.653 43.478 0.00 0.00 0.00 3.86
105 106 5.122396 CAGATTCCAGCAAGTTACTAACACC 59.878 44.000 1.79 0.00 0.00 4.16
159 160 7.803189 ACATTTTAACGACTCTAAGTTTGCATG 59.197 33.333 0.00 0.00 0.00 4.06
161 162 7.254227 ACATTTTAACGACTCTAAGTTTGCA 57.746 32.000 0.00 0.00 0.00 4.08
175 176 6.477033 TCCCACAATTCACAAACATTTTAACG 59.523 34.615 0.00 0.00 0.00 3.18
196 197 5.073144 ACAACTTAAGAGAAGATGGTTCCCA 59.927 40.000 10.09 0.00 38.19 4.37
228 229 8.918202 TTGATAAACTTATCACCAGTTCAAGT 57.082 30.769 10.92 0.00 46.58 3.16
230 231 7.360861 CGCTTGATAAACTTATCACCAGTTCAA 60.361 37.037 10.92 0.00 46.58 2.69
257 258 3.342377 TCAGACACCAAACAACTGTCA 57.658 42.857 0.00 0.00 37.39 3.58
268 269 1.337728 CCTTACACGCATCAGACACCA 60.338 52.381 0.00 0.00 0.00 4.17
281 282 4.982295 GGAAAAGCACAAATCACCTTACAC 59.018 41.667 0.00 0.00 0.00 2.90
289 290 3.493877 CGCATTTGGAAAAGCACAAATCA 59.506 39.130 0.00 0.00 43.32 2.57
302 303 4.318903 CGTAAGTACAAACACGCATTTGGA 60.319 41.667 14.45 5.10 42.74 3.53
321 322 8.836268 ACCACTAAAAATACAAGATCACGTAA 57.164 30.769 0.00 0.00 0.00 3.18
324 325 6.523201 GCAACCACTAAAAATACAAGATCACG 59.477 38.462 0.00 0.00 0.00 4.35
333 334 6.017440 TGACACAGAGCAACCACTAAAAATAC 60.017 38.462 0.00 0.00 0.00 1.89
335 336 4.887071 TGACACAGAGCAACCACTAAAAAT 59.113 37.500 0.00 0.00 0.00 1.82
345 346 5.641209 ACAAGAGATTATGACACAGAGCAAC 59.359 40.000 0.00 0.00 0.00 4.17
353 354 2.030946 GCGGCACAAGAGATTATGACAC 59.969 50.000 0.00 0.00 0.00 3.67
399 400 6.970484 ACACAGATCAAATAACCAGTGAAAC 58.030 36.000 0.00 0.00 0.00 2.78
457 458 3.120385 CGCTCAACATCGGCAGCA 61.120 61.111 0.00 0.00 0.00 4.41
756 759 7.419518 GCAGCCCAAGATCCTATATGTATACAT 60.420 40.741 21.57 21.57 40.22 2.29
809 2023 1.068541 CAGCTTAGCCAAAACGGGTTC 60.069 52.381 0.00 0.00 45.83 3.62
824 2038 3.474570 CTCTAGCCCCGCCAGCTT 61.475 66.667 0.00 0.00 41.83 3.74
837 2051 2.231478 CCAGGAAAACGAGCAGACTCTA 59.769 50.000 0.00 0.00 41.09 2.43
1169 2399 2.290134 GGTGGAAGTGGGACTAGGAAAC 60.290 54.545 0.00 0.00 0.00 2.78
1216 2470 3.054802 AGGTGGCTCTGAAGTGGAATTAG 60.055 47.826 0.00 0.00 0.00 1.73
1218 2472 1.707427 AGGTGGCTCTGAAGTGGAATT 59.293 47.619 0.00 0.00 0.00 2.17
1232 2486 1.969208 GGTATAGTAGGTCCAGGTGGC 59.031 57.143 0.00 0.00 34.44 5.01
1238 2492 3.219176 CCGTCTGGTATAGTAGGTCCA 57.781 52.381 0.00 0.00 0.00 4.02
1260 2514 1.845809 CGCTGGTGCCAACTTCTGTC 61.846 60.000 0.00 0.00 35.36 3.51
1338 2592 1.857364 CGTCACGTGTAAGGGTTGC 59.143 57.895 16.51 0.00 0.00 4.17
1343 2597 3.475774 GCCGCGTCACGTGTAAGG 61.476 66.667 16.51 15.20 41.42 2.69
1389 2643 2.431057 GTCTTCCTCCATGGTCACGTAT 59.569 50.000 12.58 0.00 37.07 3.06
1396 2650 1.187087 GTCTCGTCTTCCTCCATGGT 58.813 55.000 12.58 0.00 37.07 3.55
1397 2651 0.101399 CGTCTCGTCTTCCTCCATGG 59.899 60.000 4.97 4.97 37.10 3.66
1398 2652 0.101399 CCGTCTCGTCTTCCTCCATG 59.899 60.000 0.00 0.00 0.00 3.66
1400 2654 2.341101 GCCGTCTCGTCTTCCTCCA 61.341 63.158 0.00 0.00 0.00 3.86
1431 2685 6.896021 TTCGTCTTCTTCCTCTTCTTCTTA 57.104 37.500 0.00 0.00 0.00 2.10
1442 2696 4.434520 CCTGTTCCTATTCGTCTTCTTCC 58.565 47.826 0.00 0.00 0.00 3.46
1443 2697 4.159879 TCCCTGTTCCTATTCGTCTTCTTC 59.840 45.833 0.00 0.00 0.00 2.87
1444 2698 4.094476 TCCCTGTTCCTATTCGTCTTCTT 58.906 43.478 0.00 0.00 0.00 2.52
1450 2704 2.662866 TCGATCCCTGTTCCTATTCGT 58.337 47.619 0.00 0.00 0.00 3.85
1451 2705 3.728076 TTCGATCCCTGTTCCTATTCG 57.272 47.619 0.00 0.00 0.00 3.34
1453 2707 5.425539 TCTTCTTTCGATCCCTGTTCCTATT 59.574 40.000 0.00 0.00 0.00 1.73
1455 2709 4.350245 TCTTCTTTCGATCCCTGTTCCTA 58.650 43.478 0.00 0.00 0.00 2.94
1589 2843 0.522180 CACGTCGCTCTTCTGTAGGT 59.478 55.000 0.00 0.00 0.00 3.08
1626 2880 0.739112 GCTTGCACGAGAAGAGGAGG 60.739 60.000 0.00 0.00 0.00 4.30
1649 2903 3.838271 GGTGGCGCTCGATGGAGA 61.838 66.667 7.64 0.00 43.27 3.71
1921 3175 0.394565 AGTCTCCGCTGCTTGTCTTT 59.605 50.000 0.00 0.00 0.00 2.52
2000 3254 2.539338 TTTCTTGCGTCGTGGTGCC 61.539 57.895 0.00 0.00 0.00 5.01
2022 3276 2.725203 TTTCTTCCTCGGCGTGGTGG 62.725 60.000 25.30 18.61 0.00 4.61
2039 3293 4.025401 CCGGCGCACGCTCTTTTT 62.025 61.111 15.36 0.00 42.52 1.94
2119 3373 3.492383 GTGATATTCTGACTCACATGCGG 59.508 47.826 0.00 0.00 39.24 5.69
2125 3379 3.064958 TCCGACGTGATATTCTGACTCAC 59.935 47.826 0.00 4.82 36.72 3.51
2243 3497 4.982295 GGTCAAAATGTTGTCCTAACAAGC 59.018 41.667 4.78 0.00 45.78 4.01
2278 3532 6.071728 GGTACGGCCATTTAGCTAGTAGATAA 60.072 42.308 2.24 3.74 37.17 1.75
2296 3550 2.311124 AATCTGTAGCAAGGTACGGC 57.689 50.000 12.21 0.00 30.41 5.68
2326 3581 7.969508 ACGAAGCAGAGTAGTAAAGTATTTCTC 59.030 37.037 0.00 0.00 40.09 2.87
2337 3592 2.502142 TGGGACGAAGCAGAGTAGTA 57.498 50.000 0.00 0.00 0.00 1.82
2338 3593 1.478510 CATGGGACGAAGCAGAGTAGT 59.521 52.381 0.00 0.00 0.00 2.73
2339 3594 1.751351 TCATGGGACGAAGCAGAGTAG 59.249 52.381 0.00 0.00 0.00 2.57
2340 3595 1.847328 TCATGGGACGAAGCAGAGTA 58.153 50.000 0.00 0.00 0.00 2.59
2341 3596 1.198713 ATCATGGGACGAAGCAGAGT 58.801 50.000 0.00 0.00 0.00 3.24
2343 3598 4.832823 TCTTATATCATGGGACGAAGCAGA 59.167 41.667 0.00 0.00 0.00 4.26
2344 3599 5.139435 TCTTATATCATGGGACGAAGCAG 57.861 43.478 0.00 0.00 0.00 4.24
2345 3600 4.561530 GCTCTTATATCATGGGACGAAGCA 60.562 45.833 0.00 0.00 0.00 3.91
2346 3601 3.929610 GCTCTTATATCATGGGACGAAGC 59.070 47.826 0.00 0.00 0.00 3.86
2352 3607 7.833682 TGTTTTTCAAGCTCTTATATCATGGGA 59.166 33.333 0.00 0.00 0.00 4.37
2477 3732 5.537300 TGCCTCCAAGAACTATAGTCATC 57.463 43.478 5.70 0.90 0.00 2.92
2479 3734 6.136857 AGTATGCCTCCAAGAACTATAGTCA 58.863 40.000 5.70 0.00 0.00 3.41
2603 3858 3.802948 AATTGTTTTGCCCACACGTAA 57.197 38.095 0.00 0.00 0.00 3.18
2645 3900 0.105964 TGAGAAGGATCGGGAGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
2674 3929 2.094752 GCGTTATCAACTTTGCCCACAT 60.095 45.455 0.00 0.00 0.00 3.21
2682 3937 1.533731 CGTGTGGGCGTTATCAACTTT 59.466 47.619 0.00 0.00 0.00 2.66
2764 4019 4.120331 GGACCATGGCAACTGCGC 62.120 66.667 13.04 0.00 43.26 6.09
2860 4115 2.566833 ACTGCAGTTGAGCAACCATA 57.433 45.000 15.25 0.00 45.13 2.74
3045 4300 3.694072 ACGTGCATGTATATGGCAACTTT 59.306 39.130 10.57 0.00 34.79 2.66
3046 4301 3.278574 ACGTGCATGTATATGGCAACTT 58.721 40.909 10.57 0.00 34.79 2.66
3131 4386 3.917400 ACTGCCTAGTGTGCACGTAAGT 61.917 50.000 13.13 5.90 44.77 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.