Multiple sequence alignment - TraesCS2A01G263400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G263400 chr2A 100.000 6121 0 0 1 6121 418401504 418395384 0.000000e+00 11304.0
1 TraesCS2A01G263400 chr2D 95.562 5588 151 40 3 5517 316659172 316653609 0.000000e+00 8855.0
2 TraesCS2A01G263400 chr2D 90.909 209 14 1 5666 5874 316653610 316653407 6.040000e-70 276.0
3 TraesCS2A01G263400 chr2B 96.029 5213 128 24 713 5879 384672966 384678145 0.000000e+00 8407.0
4 TraesCS2A01G263400 chr2B 88.889 666 65 8 1 661 384653874 384654535 0.000000e+00 811.0
5 TraesCS2A01G263400 chr5D 85.544 671 85 9 3 663 203073424 203072756 0.000000e+00 691.0
6 TraesCS2A01G263400 chr5D 80.595 706 123 13 3 696 426184745 426184042 3.250000e-147 532.0
7 TraesCS2A01G263400 chr5D 92.917 240 9 6 5888 6121 180006881 180007118 5.880000e-90 342.0
8 TraesCS2A01G263400 chr5D 89.362 94 10 0 1028 1121 473363723 473363630 1.080000e-22 119.0
9 TraesCS2A01G263400 chr5D 100.000 30 0 0 669 698 331258965 331258994 8.570000e-04 56.5
10 TraesCS2A01G263400 chr6B 83.792 654 96 8 3 648 691001998 691002649 4.060000e-171 612.0
11 TraesCS2A01G263400 chr3D 82.362 669 96 14 3 659 423018627 423017969 4.140000e-156 562.0
12 TraesCS2A01G263400 chr3D 92.469 239 13 4 5888 6121 562173120 562172882 2.730000e-88 337.0
13 TraesCS2A01G263400 chr3D 91.250 240 15 4 5888 6121 536990831 536990592 7.650000e-84 322.0
14 TraesCS2A01G263400 chr6D 82.542 653 98 12 4 644 262302387 262303035 1.490000e-155 560.0
15 TraesCS2A01G263400 chr4D 82.265 671 97 18 3 661 353526704 353527364 1.490000e-155 560.0
16 TraesCS2A01G263400 chr4D 95.833 48 2 0 5832 5879 231216236 231216283 1.830000e-10 78.7
17 TraesCS2A01G263400 chr4D 88.462 52 2 3 649 696 11897667 11897718 6.630000e-05 60.2
18 TraesCS2A01G263400 chr1A 82.116 671 103 12 4 661 27746114 27746780 5.360000e-155 558.0
19 TraesCS2A01G263400 chr7B 92.562 242 10 7 5888 6121 517333063 517332822 2.110000e-89 340.0
20 TraesCS2A01G263400 chr7B 86.447 273 22 4 4899 5169 285459786 285459527 1.000000e-72 285.0
21 TraesCS2A01G263400 chr6A 92.735 234 13 4 5891 6121 410338085 410337853 9.830000e-88 335.0
22 TraesCS2A01G263400 chr1D 91.667 240 14 6 5888 6121 481281752 481281513 1.650000e-85 327.0
23 TraesCS2A01G263400 chr4B 91.949 236 14 4 5891 6121 468237285 468237050 5.920000e-85 326.0
24 TraesCS2A01G263400 chr3B 91.949 236 14 4 5891 6121 800636490 800636255 5.920000e-85 326.0
25 TraesCS2A01G263400 chr1B 91.949 236 14 4 5891 6121 678293221 678292986 5.920000e-85 326.0
26 TraesCS2A01G263400 chr7D 86.131 274 24 6 4899 5171 303040595 303040855 3.610000e-72 283.0
27 TraesCS2A01G263400 chr5B 89.899 99 9 1 1023 1121 580692691 580692594 6.440000e-25 126.0
28 TraesCS2A01G263400 chr7A 92.857 84 6 0 4899 4982 367258082 367257999 8.330000e-24 122.0
29 TraesCS2A01G263400 chr5A 88.421 95 11 0 1027 1121 593178892 593178798 1.390000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G263400 chr2A 418395384 418401504 6120 True 11304.0 11304 100.0000 1 6121 1 chr2A.!!$R1 6120
1 TraesCS2A01G263400 chr2D 316653407 316659172 5765 True 4565.5 8855 93.2355 3 5874 2 chr2D.!!$R1 5871
2 TraesCS2A01G263400 chr2B 384672966 384678145 5179 False 8407.0 8407 96.0290 713 5879 1 chr2B.!!$F2 5166
3 TraesCS2A01G263400 chr2B 384653874 384654535 661 False 811.0 811 88.8890 1 661 1 chr2B.!!$F1 660
4 TraesCS2A01G263400 chr5D 203072756 203073424 668 True 691.0 691 85.5440 3 663 1 chr5D.!!$R1 660
5 TraesCS2A01G263400 chr5D 426184042 426184745 703 True 532.0 532 80.5950 3 696 1 chr5D.!!$R2 693
6 TraesCS2A01G263400 chr6B 691001998 691002649 651 False 612.0 612 83.7920 3 648 1 chr6B.!!$F1 645
7 TraesCS2A01G263400 chr3D 423017969 423018627 658 True 562.0 562 82.3620 3 659 1 chr3D.!!$R1 656
8 TraesCS2A01G263400 chr6D 262302387 262303035 648 False 560.0 560 82.5420 4 644 1 chr6D.!!$F1 640
9 TraesCS2A01G263400 chr4D 353526704 353527364 660 False 560.0 560 82.2650 3 661 1 chr4D.!!$F3 658
10 TraesCS2A01G263400 chr1A 27746114 27746780 666 False 558.0 558 82.1160 4 661 1 chr1A.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 684 0.175760 ATCCCACGTTGGATGTCTCG 59.824 55.000 19.75 0.0 43.59 4.04 F
686 738 0.179029 AGTTTGTGGGTCCGTCTTGG 60.179 55.000 0.00 0.0 40.09 3.61 F
1207 1272 0.179127 CATCTGCGTGTCGTGGATCT 60.179 55.000 0.00 0.0 0.00 2.75 F
1605 1683 0.719465 GTCACCCGTGCTCATTTACG 59.281 55.000 0.00 0.0 39.83 3.18 F
1662 1740 1.070601 GGCAAATTGGGCACTTGAACT 59.929 47.619 0.51 0.0 0.00 3.01 F
2470 2560 1.099879 CCAGCTGCAAGTATCCCTGC 61.100 60.000 8.66 0.0 35.30 4.85 F
4028 4120 4.032960 TGTTTGCTGGAATGGTATGACT 57.967 40.909 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1753 1.042559 CCACTTGGGTGCTGGTGTTT 61.043 55.000 0.00 0.00 41.75 2.83 R
1756 1834 2.024846 TCCAAGAAGGGGAAAACACACA 60.025 45.455 0.00 0.00 38.24 3.72 R
2026 2111 4.219944 ACTCCAACAGCGTAGATAGTTCAA 59.780 41.667 0.00 0.00 0.00 2.69 R
3475 3566 0.666577 ACCGGAGTTTTCGAAGCTCG 60.667 55.000 9.46 15.26 39.36 5.03 R
3673 3764 1.885887 GGCTGTGTATTGCCTCACAAA 59.114 47.619 0.00 0.00 45.26 2.83 R
4420 4525 1.966451 GGGGCGTGGTCAGACTTTG 60.966 63.158 0.00 0.00 0.00 2.77 R
5630 5893 0.034896 TCAGGAACCGTTGAAGAGGC 59.965 55.000 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.153086 CCCTTGATCGAGCCCTTGG 60.153 63.158 4.21 0.00 0.00 3.61
73 74 1.340017 CCTTGATCGAGCCCTTGGAAA 60.340 52.381 4.21 0.00 0.00 3.13
325 330 4.796495 GCGGGGCGGTCAAAGGAT 62.796 66.667 0.00 0.00 0.00 3.24
488 520 5.062528 GGAGAGAAAATGAGGATGATGGAC 58.937 45.833 0.00 0.00 0.00 4.02
519 553 1.051556 GGAAAGGTTTTGGGTGGGCA 61.052 55.000 0.00 0.00 0.00 5.36
608 644 1.502231 CGATAGAAACTGCATCCGGG 58.498 55.000 0.00 0.00 39.76 5.73
610 646 2.741878 CGATAGAAACTGCATCCGGGTT 60.742 50.000 0.00 0.00 39.76 4.11
611 647 3.491964 CGATAGAAACTGCATCCGGGTTA 60.492 47.826 0.00 0.00 39.76 2.85
629 665 3.370739 GGTTATCCCGTGGACCAATACAA 60.371 47.826 0.00 0.00 32.98 2.41
648 684 0.175760 ATCCCACGTTGGATGTCTCG 59.824 55.000 19.75 0.00 43.59 4.04
652 688 0.943835 CACGTTGGATGTCTCGCACA 60.944 55.000 0.00 0.00 40.18 4.57
666 702 4.394712 CACAGTCCAGACGGGGGC 62.395 72.222 3.05 0.00 37.22 5.80
667 703 4.954118 ACAGTCCAGACGGGGGCA 62.954 66.667 3.05 0.00 34.02 5.36
669 705 4.640690 AGTCCAGACGGGGGCAGT 62.641 66.667 0.00 0.00 34.02 4.40
671 707 2.852075 TCCAGACGGGGGCAGTTT 60.852 61.111 0.00 0.00 37.22 2.66
673 709 2.113139 CAGACGGGGGCAGTTTGT 59.887 61.111 0.00 0.00 0.00 2.83
674 710 2.113139 AGACGGGGGCAGTTTGTG 59.887 61.111 0.00 0.00 0.00 3.33
686 738 0.179029 AGTTTGTGGGTCCGTCTTGG 60.179 55.000 0.00 0.00 40.09 3.61
694 746 3.309582 TCCGTCTTGGAGATGCCC 58.690 61.111 0.00 0.00 43.74 5.36
697 749 0.830648 CCGTCTTGGAGATGCCCTAA 59.169 55.000 0.00 0.00 42.00 2.69
750 803 0.180406 GATTGGGCCCACGATACACT 59.820 55.000 28.70 1.03 0.00 3.55
819 882 3.175240 CACTGACCGCGCTTCTCG 61.175 66.667 5.56 0.40 42.12 4.04
880 943 5.930837 AAACATGTTTCTCAGGAAAACCA 57.069 34.783 18.13 0.00 42.22 3.67
1089 1152 2.438392 CCCCAAGGAGTACTGGGATTAC 59.562 54.545 17.46 0.00 43.78 1.89
1207 1272 0.179127 CATCTGCGTGTCGTGGATCT 60.179 55.000 0.00 0.00 0.00 2.75
1226 1291 2.673862 TCTTTTTCGTCTGTTCGTTGCA 59.326 40.909 0.00 0.00 0.00 4.08
1569 1647 1.335872 CCACAAATTGAGCACCCGAAC 60.336 52.381 0.00 0.00 0.00 3.95
1571 1649 0.958091 CAAATTGAGCACCCGAACCA 59.042 50.000 0.00 0.00 0.00 3.67
1605 1683 0.719465 GTCACCCGTGCTCATTTACG 59.281 55.000 0.00 0.00 39.83 3.18
1662 1740 1.070601 GGCAAATTGGGCACTTGAACT 59.929 47.619 0.51 0.00 0.00 3.01
1675 1753 3.882888 CACTTGAACTTGCCTTGGACTAA 59.117 43.478 0.00 0.00 0.00 2.24
1756 1834 9.646427 TTTATTGTTTTGAACAGTTGCTAGTTT 57.354 25.926 0.00 0.00 43.27 2.66
1927 2012 3.699038 AGCAGCTGTTCCAAGTAAAAACA 59.301 39.130 16.64 0.00 0.00 2.83
2026 2111 6.208204 GCAACATGAGATAAATAAGGCTCCAT 59.792 38.462 0.00 0.00 0.00 3.41
2194 2279 1.962807 TGAGCTTGACATGGGGTTTTG 59.037 47.619 0.00 0.00 0.00 2.44
2213 2298 8.315482 GGGTTTTGTTGCCCTCTTATTTTTATA 58.685 33.333 0.00 0.00 41.63 0.98
2214 2299 9.884636 GGTTTTGTTGCCCTCTTATTTTTATAT 57.115 29.630 0.00 0.00 0.00 0.86
2297 2387 3.191581 TGACCTTTGTCTTGCACGAAAAA 59.808 39.130 8.17 8.17 42.28 1.94
2298 2388 4.142271 TGACCTTTGTCTTGCACGAAAAAT 60.142 37.500 8.83 0.00 42.28 1.82
2299 2389 5.066634 TGACCTTTGTCTTGCACGAAAAATA 59.933 36.000 8.83 0.00 42.28 1.40
2300 2390 6.084326 ACCTTTGTCTTGCACGAAAAATAT 57.916 33.333 8.83 0.00 0.00 1.28
2301 2391 7.041030 TGACCTTTGTCTTGCACGAAAAATATA 60.041 33.333 8.83 0.00 42.28 0.86
2302 2392 7.826690 ACCTTTGTCTTGCACGAAAAATATAT 58.173 30.769 8.83 0.00 0.00 0.86
2303 2393 8.303876 ACCTTTGTCTTGCACGAAAAATATATT 58.696 29.630 8.83 0.00 0.00 1.28
2470 2560 1.099879 CCAGCTGCAAGTATCCCTGC 61.100 60.000 8.66 0.00 35.30 4.85
3475 3566 6.933521 AGCCTCACAATGTTATGATAGATCAC 59.066 38.462 0.00 0.00 40.03 3.06
3581 3672 6.742109 TCAAGGTAGGTACATAGAAATACGC 58.258 40.000 0.00 0.00 0.00 4.42
3673 3764 4.990526 ACAATTGGTCTTCTTCTGGTCAT 58.009 39.130 10.83 0.00 0.00 3.06
4028 4120 4.032960 TGTTTGCTGGAATGGTATGACT 57.967 40.909 0.00 0.00 0.00 3.41
4283 4384 8.159447 TGGCATATGATATTCTTTAGAGTTGCT 58.841 33.333 6.97 0.00 0.00 3.91
4343 4444 4.344679 TGGTTCTGGCTCAATGTTTTGATT 59.655 37.500 0.00 0.00 40.95 2.57
4420 4525 3.234386 GTTTGAACTTAACATGAGCGCC 58.766 45.455 2.29 0.00 0.00 6.53
4434 4539 2.954753 GCGCCAAAGTCTGACCACG 61.955 63.158 3.76 2.99 0.00 4.94
4524 4629 1.077858 CCCTCAGCTTGAAGCCCTC 60.078 63.158 14.45 0.00 43.77 4.30
4756 4863 1.508632 TTCTCAACGAGGCCTTTTCG 58.491 50.000 6.77 9.40 43.38 3.46
4822 4929 1.346068 GATCACCAGGATAGGCTCACC 59.654 57.143 0.00 0.00 36.00 4.02
4856 4963 7.908453 AGCTATGGTAAGTCTTACTGTTTTCT 58.092 34.615 19.70 9.34 36.39 2.52
4872 4982 2.839486 TTCTACTGGTTCAGTGGCTG 57.161 50.000 10.46 0.00 45.01 4.85
5028 5138 6.721208 AGGATGTCATGTTTGGAGTTACAATT 59.279 34.615 0.00 0.00 0.00 2.32
5032 5142 8.226819 TGTCATGTTTGGAGTTACAATTGTTA 57.773 30.769 17.78 4.48 0.00 2.41
5258 5370 1.146930 CTGTGTGGTGTGTGCCTCT 59.853 57.895 0.00 0.00 0.00 3.69
5259 5371 0.882042 CTGTGTGGTGTGTGCCTCTC 60.882 60.000 0.00 0.00 0.00 3.20
5315 5427 4.340950 CCTGTTGTTTGTGTATGGAAACCT 59.659 41.667 0.00 0.00 32.13 3.50
5465 5578 4.941263 AGCTTGTTATTTTGATGAGCCGTA 59.059 37.500 0.00 0.00 0.00 4.02
5474 5587 1.899814 TGATGAGCCGTACAACTCCTT 59.100 47.619 9.09 0.00 31.65 3.36
5475 5588 2.094182 TGATGAGCCGTACAACTCCTTC 60.094 50.000 9.09 7.21 31.65 3.46
5476 5589 0.606604 TGAGCCGTACAACTCCTTCC 59.393 55.000 9.09 0.00 31.65 3.46
5477 5590 0.108281 GAGCCGTACAACTCCTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
5478 5591 0.544595 AGCCGTACAACTCCTTCCCT 60.545 55.000 0.00 0.00 0.00 4.20
5479 5592 1.188863 GCCGTACAACTCCTTCCCTA 58.811 55.000 0.00 0.00 0.00 3.53
5533 5796 6.874288 AAATCAAGAGTCTTTCTTCTGTGG 57.126 37.500 1.56 0.00 44.34 4.17
5534 5797 5.559148 ATCAAGAGTCTTTCTTCTGTGGT 57.441 39.130 1.56 0.00 44.34 4.16
5535 5798 5.359194 TCAAGAGTCTTTCTTCTGTGGTT 57.641 39.130 1.56 0.00 44.34 3.67
5536 5799 5.745227 TCAAGAGTCTTTCTTCTGTGGTTT 58.255 37.500 1.56 0.00 44.34 3.27
5537 5800 6.180472 TCAAGAGTCTTTCTTCTGTGGTTTT 58.820 36.000 1.56 0.00 44.34 2.43
5538 5801 6.094048 TCAAGAGTCTTTCTTCTGTGGTTTTG 59.906 38.462 1.56 0.00 44.34 2.44
5539 5802 4.884164 AGAGTCTTTCTTCTGTGGTTTTGG 59.116 41.667 0.00 0.00 29.61 3.28
5540 5803 3.381590 AGTCTTTCTTCTGTGGTTTTGGC 59.618 43.478 0.00 0.00 0.00 4.52
5541 5804 2.693074 TCTTTCTTCTGTGGTTTTGGCC 59.307 45.455 0.00 0.00 0.00 5.36
5542 5805 2.151502 TTCTTCTGTGGTTTTGGCCA 57.848 45.000 0.00 0.00 35.93 5.36
5543 5806 1.691196 TCTTCTGTGGTTTTGGCCAG 58.309 50.000 5.11 0.00 39.53 4.85
5544 5807 1.214175 TCTTCTGTGGTTTTGGCCAGA 59.786 47.619 5.11 0.00 39.53 3.86
5545 5808 2.158475 TCTTCTGTGGTTTTGGCCAGAT 60.158 45.455 5.11 0.00 39.53 2.90
5546 5809 2.380064 TCTGTGGTTTTGGCCAGATT 57.620 45.000 5.11 0.00 39.53 2.40
5547 5810 1.962807 TCTGTGGTTTTGGCCAGATTG 59.037 47.619 5.11 0.00 39.53 2.67
5548 5811 0.392336 TGTGGTTTTGGCCAGATTGC 59.608 50.000 5.11 0.00 39.53 3.56
5549 5812 0.392336 GTGGTTTTGGCCAGATTGCA 59.608 50.000 5.11 0.00 39.53 4.08
5550 5813 0.680618 TGGTTTTGGCCAGATTGCAG 59.319 50.000 5.11 0.00 33.97 4.41
5551 5814 0.681175 GGTTTTGGCCAGATTGCAGT 59.319 50.000 5.11 0.00 0.00 4.40
5552 5815 1.337167 GGTTTTGGCCAGATTGCAGTC 60.337 52.381 5.11 0.00 0.00 3.51
5553 5816 1.340889 GTTTTGGCCAGATTGCAGTCA 59.659 47.619 12.16 0.00 0.00 3.41
5554 5817 1.702182 TTTGGCCAGATTGCAGTCAA 58.298 45.000 12.16 0.00 36.51 3.18
5555 5818 1.702182 TTGGCCAGATTGCAGTCAAA 58.298 45.000 12.16 0.00 35.56 2.69
5556 5819 1.927487 TGGCCAGATTGCAGTCAAAT 58.073 45.000 12.16 0.00 35.56 2.32
5557 5820 2.250031 TGGCCAGATTGCAGTCAAATT 58.750 42.857 12.16 0.00 35.56 1.82
5558 5821 2.028839 TGGCCAGATTGCAGTCAAATTG 60.029 45.455 12.16 0.75 35.56 2.32
5559 5822 2.231964 GGCCAGATTGCAGTCAAATTGA 59.768 45.455 12.16 0.00 35.56 2.57
5571 5834 4.585619 GTCAAATTGACGTCCTAAGAGC 57.414 45.455 14.12 0.00 37.67 4.09
5572 5835 3.994392 GTCAAATTGACGTCCTAAGAGCA 59.006 43.478 14.12 0.00 37.67 4.26
5573 5836 4.631813 GTCAAATTGACGTCCTAAGAGCAT 59.368 41.667 14.12 0.00 37.67 3.79
5574 5837 4.870426 TCAAATTGACGTCCTAAGAGCATC 59.130 41.667 14.12 0.00 0.00 3.91
5575 5838 7.341917 GTCAAATTGACGTCCTAAGAGCATCT 61.342 42.308 14.12 0.00 42.58 2.90
5576 5839 9.041684 GTCAAATTGACGTCCTAAGAGCATCTC 62.042 44.444 14.12 0.00 40.74 2.75
5585 5848 4.116878 GAGCATCTCCAACGGCTC 57.883 61.111 0.00 0.00 44.97 4.70
5586 5849 1.522580 GAGCATCTCCAACGGCTCC 60.523 63.158 0.00 0.00 45.31 4.70
5587 5850 2.514824 GCATCTCCAACGGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
5588 5851 2.190578 CATCTCCAACGGCTCCCC 59.809 66.667 0.00 0.00 0.00 4.81
5589 5852 2.041265 ATCTCCAACGGCTCCCCT 59.959 61.111 0.00 0.00 0.00 4.79
5590 5853 1.048724 CATCTCCAACGGCTCCCCTA 61.049 60.000 0.00 0.00 0.00 3.53
5591 5854 0.104934 ATCTCCAACGGCTCCCCTAT 60.105 55.000 0.00 0.00 0.00 2.57
5592 5855 1.048724 TCTCCAACGGCTCCCCTATG 61.049 60.000 0.00 0.00 0.00 2.23
5593 5856 1.306654 TCCAACGGCTCCCCTATGT 60.307 57.895 0.00 0.00 0.00 2.29
5594 5857 1.146263 CCAACGGCTCCCCTATGTC 59.854 63.158 0.00 0.00 0.00 3.06
5595 5858 1.338136 CCAACGGCTCCCCTATGTCT 61.338 60.000 0.00 0.00 0.00 3.41
5596 5859 1.410004 CAACGGCTCCCCTATGTCTA 58.590 55.000 0.00 0.00 0.00 2.59
5597 5860 1.760613 CAACGGCTCCCCTATGTCTAA 59.239 52.381 0.00 0.00 0.00 2.10
5598 5861 2.368875 CAACGGCTCCCCTATGTCTAAT 59.631 50.000 0.00 0.00 0.00 1.73
5599 5862 2.249139 ACGGCTCCCCTATGTCTAATC 58.751 52.381 0.00 0.00 0.00 1.75
5600 5863 1.202582 CGGCTCCCCTATGTCTAATCG 59.797 57.143 0.00 0.00 0.00 3.34
5601 5864 1.066787 GGCTCCCCTATGTCTAATCGC 60.067 57.143 0.00 0.00 0.00 4.58
5602 5865 1.896465 GCTCCCCTATGTCTAATCGCT 59.104 52.381 0.00 0.00 0.00 4.93
5603 5866 2.353208 GCTCCCCTATGTCTAATCGCTG 60.353 54.545 0.00 0.00 0.00 5.18
5604 5867 2.894126 CTCCCCTATGTCTAATCGCTGT 59.106 50.000 0.00 0.00 0.00 4.40
5605 5868 3.305720 TCCCCTATGTCTAATCGCTGTT 58.694 45.455 0.00 0.00 0.00 3.16
5606 5869 3.709653 TCCCCTATGTCTAATCGCTGTTT 59.290 43.478 0.00 0.00 0.00 2.83
5607 5870 4.897076 TCCCCTATGTCTAATCGCTGTTTA 59.103 41.667 0.00 0.00 0.00 2.01
5608 5871 4.989168 CCCCTATGTCTAATCGCTGTTTAC 59.011 45.833 0.00 0.00 0.00 2.01
5609 5872 4.680110 CCCTATGTCTAATCGCTGTTTACG 59.320 45.833 0.00 0.00 0.00 3.18
5610 5873 4.680110 CCTATGTCTAATCGCTGTTTACGG 59.320 45.833 0.00 0.00 0.00 4.02
5611 5874 2.264813 TGTCTAATCGCTGTTTACGGC 58.735 47.619 3.58 3.58 44.53 5.68
5620 5883 0.596082 CTGTTTACGGCAAGTTGGGG 59.404 55.000 4.75 0.00 0.00 4.96
5621 5884 0.824182 TGTTTACGGCAAGTTGGGGG 60.824 55.000 4.75 0.00 0.00 5.40
5637 5900 1.848652 GGGGGTAAAAAGGCCTCTTC 58.151 55.000 5.23 0.00 31.82 2.87
5638 5901 1.076513 GGGGGTAAAAAGGCCTCTTCA 59.923 52.381 5.23 0.00 31.82 3.02
5639 5902 2.492010 GGGGGTAAAAAGGCCTCTTCAA 60.492 50.000 5.23 0.00 31.82 2.69
5640 5903 2.561419 GGGGTAAAAAGGCCTCTTCAAC 59.439 50.000 5.23 0.00 31.82 3.18
5641 5904 2.228103 GGGTAAAAAGGCCTCTTCAACG 59.772 50.000 5.23 0.00 31.82 4.10
5642 5905 2.228103 GGTAAAAAGGCCTCTTCAACGG 59.772 50.000 5.23 0.00 31.82 4.44
5643 5906 2.067365 AAAAAGGCCTCTTCAACGGT 57.933 45.000 5.23 0.00 31.82 4.83
5644 5907 2.067365 AAAAGGCCTCTTCAACGGTT 57.933 45.000 5.23 0.00 31.82 4.44
5645 5908 1.605753 AAAGGCCTCTTCAACGGTTC 58.394 50.000 5.23 0.00 31.82 3.62
5646 5909 0.250770 AAGGCCTCTTCAACGGTTCC 60.251 55.000 5.23 0.00 0.00 3.62
5647 5910 1.128188 AGGCCTCTTCAACGGTTCCT 61.128 55.000 0.00 0.00 0.00 3.36
5648 5911 0.955919 GGCCTCTTCAACGGTTCCTG 60.956 60.000 0.00 0.00 0.00 3.86
5649 5912 0.034896 GCCTCTTCAACGGTTCCTGA 59.965 55.000 0.00 0.00 0.00 3.86
5650 5913 1.542547 GCCTCTTCAACGGTTCCTGAA 60.543 52.381 0.00 0.00 0.00 3.02
5651 5914 2.846193 CCTCTTCAACGGTTCCTGAAA 58.154 47.619 0.00 0.00 31.41 2.69
5652 5915 2.808543 CCTCTTCAACGGTTCCTGAAAG 59.191 50.000 0.00 0.00 31.41 2.62
5653 5916 3.467803 CTCTTCAACGGTTCCTGAAAGT 58.532 45.455 0.00 0.00 31.41 2.66
5654 5917 3.202906 TCTTCAACGGTTCCTGAAAGTG 58.797 45.455 0.00 0.00 31.41 3.16
5655 5918 1.961793 TCAACGGTTCCTGAAAGTGG 58.038 50.000 0.00 0.00 0.00 4.00
5656 5919 0.310854 CAACGGTTCCTGAAAGTGGC 59.689 55.000 0.00 0.00 0.00 5.01
5657 5920 0.822121 AACGGTTCCTGAAAGTGGCC 60.822 55.000 0.00 0.00 0.00 5.36
5658 5921 1.228124 CGGTTCCTGAAAGTGGCCA 60.228 57.895 0.00 0.00 0.00 5.36
5659 5922 0.609131 CGGTTCCTGAAAGTGGCCAT 60.609 55.000 9.72 0.00 0.00 4.40
5660 5923 1.339631 CGGTTCCTGAAAGTGGCCATA 60.340 52.381 9.72 0.00 0.00 2.74
5661 5924 2.802719 GGTTCCTGAAAGTGGCCATAA 58.197 47.619 9.72 0.00 0.00 1.90
5662 5925 2.492088 GGTTCCTGAAAGTGGCCATAAC 59.508 50.000 9.72 0.00 0.00 1.89
5663 5926 3.421844 GTTCCTGAAAGTGGCCATAACT 58.578 45.455 9.72 0.00 0.00 2.24
5664 5927 3.806949 TCCTGAAAGTGGCCATAACTT 57.193 42.857 9.72 4.69 39.55 2.66
5665 5928 4.919774 TCCTGAAAGTGGCCATAACTTA 57.080 40.909 9.72 0.00 36.87 2.24
5666 5929 5.249780 TCCTGAAAGTGGCCATAACTTAA 57.750 39.130 9.72 0.00 36.87 1.85
5677 5940 3.718815 CCATAACTTAACTCGAGAGGCC 58.281 50.000 21.68 0.00 0.00 5.19
5705 5968 6.598064 CGTAAACTGGTCCTTTTCTTCCATAT 59.402 38.462 0.00 0.00 0.00 1.78
5706 5969 7.767198 CGTAAACTGGTCCTTTTCTTCCATATA 59.233 37.037 0.00 0.00 0.00 0.86
5707 5970 9.457436 GTAAACTGGTCCTTTTCTTCCATATAA 57.543 33.333 0.00 0.00 0.00 0.98
5708 5971 8.581253 AAACTGGTCCTTTTCTTCCATATAAG 57.419 34.615 0.00 0.00 0.00 1.73
5763 6026 7.618137 GGAAGAACTCCACCTTACTGTTATAA 58.382 38.462 0.00 0.00 44.67 0.98
5770 6033 6.346096 TCCACCTTACTGTTATAATGAGTGC 58.654 40.000 9.35 0.00 0.00 4.40
5806 6069 5.705609 TCAATGTACTGCGCTAGATATCA 57.294 39.130 9.73 0.00 0.00 2.15
5822 6085 7.255520 GCTAGATATCACTTTAGAAACGGGAGA 60.256 40.741 5.32 0.00 0.00 3.71
5823 6086 6.807789 AGATATCACTTTAGAAACGGGAGAC 58.192 40.000 5.32 0.00 0.00 3.36
5874 6137 8.583296 CAAGTTCTATAATAGGTAGTGGGGTAC 58.417 40.741 0.00 0.00 0.00 3.34
5879 6142 8.057623 TCTATAATAGGTAGTGGGGTACATAGC 58.942 40.741 0.00 0.00 0.00 2.97
5880 6143 1.700955 AGGTAGTGGGGTACATAGCG 58.299 55.000 0.00 0.00 0.00 4.26
5881 6144 0.677842 GGTAGTGGGGTACATAGCGG 59.322 60.000 0.00 0.00 0.00 5.52
5882 6145 1.696063 GTAGTGGGGTACATAGCGGA 58.304 55.000 0.00 0.00 0.00 5.54
5883 6146 2.034124 GTAGTGGGGTACATAGCGGAA 58.966 52.381 0.00 0.00 0.00 4.30
5884 6147 1.575419 AGTGGGGTACATAGCGGAAA 58.425 50.000 0.00 0.00 0.00 3.13
5885 6148 2.124411 AGTGGGGTACATAGCGGAAAT 58.876 47.619 0.00 0.00 0.00 2.17
5886 6149 2.104281 AGTGGGGTACATAGCGGAAATC 59.896 50.000 0.00 0.00 0.00 2.17
5887 6150 1.418637 TGGGGTACATAGCGGAAATCC 59.581 52.381 0.00 0.00 0.00 3.01
5888 6151 1.271217 GGGGTACATAGCGGAAATCCC 60.271 57.143 0.00 0.00 0.00 3.85
5889 6152 1.697982 GGGTACATAGCGGAAATCCCT 59.302 52.381 0.00 0.00 0.00 4.20
5890 6153 2.289506 GGGTACATAGCGGAAATCCCTC 60.290 54.545 0.00 0.00 0.00 4.30
5891 6154 2.367567 GGTACATAGCGGAAATCCCTCA 59.632 50.000 0.00 0.00 0.00 3.86
5892 6155 2.918712 ACATAGCGGAAATCCCTCAG 57.081 50.000 0.00 0.00 0.00 3.35
5893 6156 2.119495 ACATAGCGGAAATCCCTCAGT 58.881 47.619 0.00 0.00 0.00 3.41
5894 6157 2.158900 ACATAGCGGAAATCCCTCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
5895 6158 0.830648 TAGCGGAAATCCCTCAGTGG 59.169 55.000 0.00 0.00 0.00 4.00
5911 6174 3.880174 TGGGGCCTCCAAATTCAAA 57.120 47.368 10.25 0.00 43.84 2.69
5912 6175 2.340721 TGGGGCCTCCAAATTCAAAT 57.659 45.000 10.25 0.00 43.84 2.32
5913 6176 2.630232 TGGGGCCTCCAAATTCAAATT 58.370 42.857 10.25 0.00 43.84 1.82
5914 6177 2.985311 TGGGGCCTCCAAATTCAAATTT 59.015 40.909 10.25 0.00 43.84 1.82
5989 6252 5.614324 AGCTATACTGAAGGCATAACACA 57.386 39.130 0.00 0.00 0.00 3.72
5990 6253 6.179906 AGCTATACTGAAGGCATAACACAT 57.820 37.500 0.00 0.00 0.00 3.21
5991 6254 5.994054 AGCTATACTGAAGGCATAACACATG 59.006 40.000 0.00 0.00 0.00 3.21
5992 6255 5.760253 GCTATACTGAAGGCATAACACATGT 59.240 40.000 0.00 0.00 0.00 3.21
5993 6256 6.293081 GCTATACTGAAGGCATAACACATGTG 60.293 42.308 24.25 24.25 0.00 3.21
6011 6274 7.985634 ACATGTGTGTGTAAATTTTCAGTTC 57.014 32.000 0.00 0.00 37.14 3.01
6012 6275 7.542890 ACATGTGTGTGTAAATTTTCAGTTCA 58.457 30.769 0.00 0.00 37.14 3.18
6013 6276 8.031864 ACATGTGTGTGTAAATTTTCAGTTCAA 58.968 29.630 0.00 0.00 37.14 2.69
6014 6277 8.867935 CATGTGTGTGTAAATTTTCAGTTCAAA 58.132 29.630 0.00 0.00 0.00 2.69
6015 6278 8.818141 TGTGTGTGTAAATTTTCAGTTCAAAA 57.182 26.923 0.00 0.00 0.00 2.44
6016 6279 9.429359 TGTGTGTGTAAATTTTCAGTTCAAAAT 57.571 25.926 0.00 0.00 37.53 1.82
6033 6296 6.855763 TCAAAATACATTGAAATGAGGGCT 57.144 33.333 9.94 0.00 39.67 5.19
6034 6297 6.632909 TCAAAATACATTGAAATGAGGGCTG 58.367 36.000 9.94 2.52 39.67 4.85
6035 6298 6.211184 TCAAAATACATTGAAATGAGGGCTGT 59.789 34.615 9.94 0.00 39.67 4.40
6036 6299 5.587388 AATACATTGAAATGAGGGCTGTG 57.413 39.130 9.94 0.00 39.67 3.66
6037 6300 1.547372 ACATTGAAATGAGGGCTGTGC 59.453 47.619 9.94 0.00 39.67 4.57
6038 6301 1.822990 CATTGAAATGAGGGCTGTGCT 59.177 47.619 0.00 0.00 38.70 4.40
6039 6302 2.877097 TTGAAATGAGGGCTGTGCTA 57.123 45.000 0.00 0.00 0.00 3.49
6040 6303 2.877097 TGAAATGAGGGCTGTGCTAA 57.123 45.000 0.00 0.00 0.00 3.09
6041 6304 3.153369 TGAAATGAGGGCTGTGCTAAA 57.847 42.857 0.00 0.00 0.00 1.85
6042 6305 3.495331 TGAAATGAGGGCTGTGCTAAAA 58.505 40.909 0.00 0.00 0.00 1.52
6043 6306 3.894427 TGAAATGAGGGCTGTGCTAAAAA 59.106 39.130 0.00 0.00 0.00 1.94
6044 6307 4.022068 TGAAATGAGGGCTGTGCTAAAAAG 60.022 41.667 0.00 0.00 0.00 2.27
6045 6308 2.949177 TGAGGGCTGTGCTAAAAAGA 57.051 45.000 0.00 0.00 0.00 2.52
6046 6309 2.504367 TGAGGGCTGTGCTAAAAAGAC 58.496 47.619 0.00 0.00 0.00 3.01
6047 6310 2.158682 TGAGGGCTGTGCTAAAAAGACA 60.159 45.455 0.00 0.00 0.00 3.41
6048 6311 2.884639 GAGGGCTGTGCTAAAAAGACAA 59.115 45.455 0.00 0.00 0.00 3.18
6049 6312 3.295973 AGGGCTGTGCTAAAAAGACAAA 58.704 40.909 0.00 0.00 0.00 2.83
6050 6313 3.897505 AGGGCTGTGCTAAAAAGACAAAT 59.102 39.130 0.00 0.00 0.00 2.32
6051 6314 4.021981 AGGGCTGTGCTAAAAAGACAAATC 60.022 41.667 0.00 0.00 0.00 2.17
6052 6315 4.021981 GGGCTGTGCTAAAAAGACAAATCT 60.022 41.667 0.00 0.00 36.42 2.40
6053 6316 5.183140 GGGCTGTGCTAAAAAGACAAATCTA 59.817 40.000 0.00 0.00 33.57 1.98
6054 6317 6.317857 GGCTGTGCTAAAAAGACAAATCTAG 58.682 40.000 0.00 0.00 33.57 2.43
6055 6318 6.317857 GCTGTGCTAAAAAGACAAATCTAGG 58.682 40.000 0.00 0.00 33.57 3.02
6056 6319 6.623767 GCTGTGCTAAAAAGACAAATCTAGGG 60.624 42.308 0.00 0.00 33.57 3.53
6057 6320 5.183140 TGTGCTAAAAAGACAAATCTAGGGC 59.817 40.000 0.00 0.00 33.57 5.19
6058 6321 5.416013 GTGCTAAAAAGACAAATCTAGGGCT 59.584 40.000 0.00 0.00 33.57 5.19
6059 6322 5.415701 TGCTAAAAAGACAAATCTAGGGCTG 59.584 40.000 0.00 0.00 33.57 4.85
6060 6323 5.416013 GCTAAAAAGACAAATCTAGGGCTGT 59.584 40.000 0.00 0.00 33.57 4.40
6061 6324 6.071896 GCTAAAAAGACAAATCTAGGGCTGTT 60.072 38.462 0.00 0.00 33.57 3.16
6062 6325 6.731292 AAAAAGACAAATCTAGGGCTGTTT 57.269 33.333 0.00 0.00 33.57 2.83
6063 6326 7.833285 AAAAAGACAAATCTAGGGCTGTTTA 57.167 32.000 0.00 0.00 33.57 2.01
6064 6327 7.833285 AAAAGACAAATCTAGGGCTGTTTAA 57.167 32.000 0.00 0.00 33.57 1.52
6065 6328 6.819397 AAGACAAATCTAGGGCTGTTTAAC 57.181 37.500 0.00 0.00 33.57 2.01
6066 6329 5.876357 AGACAAATCTAGGGCTGTTTAACA 58.124 37.500 0.00 0.00 31.46 2.41
6067 6330 5.705905 AGACAAATCTAGGGCTGTTTAACAC 59.294 40.000 0.00 0.00 31.46 3.32
6068 6331 5.381757 ACAAATCTAGGGCTGTTTAACACA 58.618 37.500 0.00 0.00 0.00 3.72
6069 6332 6.010219 ACAAATCTAGGGCTGTTTAACACAT 58.990 36.000 0.00 0.00 33.76 3.21
6070 6333 6.071952 ACAAATCTAGGGCTGTTTAACACATG 60.072 38.462 0.00 0.00 33.76 3.21
6071 6334 4.901197 TCTAGGGCTGTTTAACACATGA 57.099 40.909 0.00 0.00 33.76 3.07
6072 6335 5.435686 TCTAGGGCTGTTTAACACATGAT 57.564 39.130 0.00 0.00 33.76 2.45
6073 6336 5.185454 TCTAGGGCTGTTTAACACATGATG 58.815 41.667 0.00 0.00 33.76 3.07
6074 6337 3.766545 AGGGCTGTTTAACACATGATGT 58.233 40.909 0.00 0.00 46.42 3.06
6075 6338 4.917385 AGGGCTGTTTAACACATGATGTA 58.083 39.130 0.00 0.00 42.31 2.29
6076 6339 5.509498 AGGGCTGTTTAACACATGATGTAT 58.491 37.500 0.00 0.00 42.31 2.29
6077 6340 5.951747 AGGGCTGTTTAACACATGATGTATT 59.048 36.000 0.00 0.00 42.31 1.89
6078 6341 6.095440 AGGGCTGTTTAACACATGATGTATTC 59.905 38.462 0.00 0.00 42.31 1.75
6079 6342 6.127758 GGGCTGTTTAACACATGATGTATTCA 60.128 38.462 0.00 0.00 42.31 2.57
6080 6343 7.416664 GGGCTGTTTAACACATGATGTATTCAT 60.417 37.037 0.00 0.00 46.27 2.57
6081 6344 7.645340 GGCTGTTTAACACATGATGTATTCATC 59.355 37.037 0.00 5.43 43.40 2.92
6082 6345 7.645340 GCTGTTTAACACATGATGTATTCATCC 59.355 37.037 9.55 0.00 46.96 3.51
6083 6346 8.806429 TGTTTAACACATGATGTATTCATCCT 57.194 30.769 9.55 0.00 46.96 3.24
6084 6347 8.892723 TGTTTAACACATGATGTATTCATCCTC 58.107 33.333 9.55 0.00 46.96 3.71
6085 6348 8.345565 GTTTAACACATGATGTATTCATCCTCC 58.654 37.037 9.55 0.00 46.96 4.30
6086 6349 4.978099 ACACATGATGTATTCATCCTCCC 58.022 43.478 9.55 0.00 46.96 4.30
6087 6350 4.413189 ACACATGATGTATTCATCCTCCCA 59.587 41.667 9.55 0.00 46.96 4.37
6088 6351 5.103982 ACACATGATGTATTCATCCTCCCAA 60.104 40.000 9.55 0.00 46.96 4.12
6089 6352 5.472478 CACATGATGTATTCATCCTCCCAAG 59.528 44.000 9.55 0.00 46.96 3.61
6090 6353 4.090761 TGATGTATTCATCCTCCCAAGC 57.909 45.455 9.55 0.00 46.96 4.01
6091 6354 3.181440 TGATGTATTCATCCTCCCAAGCC 60.181 47.826 9.55 0.00 46.96 4.35
6092 6355 2.204463 TGTATTCATCCTCCCAAGCCA 58.796 47.619 0.00 0.00 0.00 4.75
6093 6356 2.785269 TGTATTCATCCTCCCAAGCCAT 59.215 45.455 0.00 0.00 0.00 4.40
6094 6357 2.376695 ATTCATCCTCCCAAGCCATG 57.623 50.000 0.00 0.00 0.00 3.66
6095 6358 1.297968 TTCATCCTCCCAAGCCATGA 58.702 50.000 0.00 0.00 0.00 3.07
6096 6359 1.297968 TCATCCTCCCAAGCCATGAA 58.702 50.000 0.00 0.00 0.00 2.57
6097 6360 1.854939 TCATCCTCCCAAGCCATGAAT 59.145 47.619 0.00 0.00 0.00 2.57
6098 6361 2.245546 TCATCCTCCCAAGCCATGAATT 59.754 45.455 0.00 0.00 0.00 2.17
6099 6362 2.925966 TCCTCCCAAGCCATGAATTT 57.074 45.000 0.00 0.00 0.00 1.82
6100 6363 2.459644 TCCTCCCAAGCCATGAATTTG 58.540 47.619 0.00 0.00 0.00 2.32
6101 6364 2.181975 CCTCCCAAGCCATGAATTTGT 58.818 47.619 0.00 0.00 0.00 2.83
6102 6365 2.167075 CCTCCCAAGCCATGAATTTGTC 59.833 50.000 0.00 0.00 0.00 3.18
6103 6366 3.094572 CTCCCAAGCCATGAATTTGTCT 58.905 45.455 0.00 0.00 0.00 3.41
6104 6367 3.509442 TCCCAAGCCATGAATTTGTCTT 58.491 40.909 0.00 0.00 0.00 3.01
6105 6368 3.903090 TCCCAAGCCATGAATTTGTCTTT 59.097 39.130 0.00 0.00 0.00 2.52
6106 6369 4.347583 TCCCAAGCCATGAATTTGTCTTTT 59.652 37.500 0.00 0.00 0.00 2.27
6107 6370 5.065235 CCCAAGCCATGAATTTGTCTTTTT 58.935 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.012374 TGGAGGAGCATGTTCTCAATTTC 58.988 43.478 9.57 0.00 34.84 2.17
73 74 2.306805 TGTGGAGGAGCATGTTCTCAAT 59.693 45.455 9.57 0.00 34.84 2.57
103 104 3.709653 TGATGTAGGCGGTCCTTTAAGAT 59.290 43.478 0.00 0.00 40.66 2.40
320 325 2.500504 GTCTCCGTTCAACCCTATCCTT 59.499 50.000 0.00 0.00 0.00 3.36
325 330 0.251297 TCCGTCTCCGTTCAACCCTA 60.251 55.000 0.00 0.00 0.00 3.53
403 409 3.642503 CCACCACGCCACCCCTAA 61.643 66.667 0.00 0.00 0.00 2.69
445 470 3.392616 TCCTGCCTTCTTTCTCTCTTGTT 59.607 43.478 0.00 0.00 0.00 2.83
488 520 2.125512 CTTTCCGGACCCTGCGAG 60.126 66.667 1.83 0.00 30.86 5.03
519 553 2.118403 ACATAGGAATCCGACCCCAT 57.882 50.000 0.00 0.00 0.00 4.00
608 644 3.547054 TGTATTGGTCCACGGGATAAC 57.453 47.619 0.00 0.00 32.73 1.89
610 646 3.071892 GGATTGTATTGGTCCACGGGATA 59.928 47.826 0.00 0.00 32.73 2.59
611 647 2.158667 GGATTGTATTGGTCCACGGGAT 60.159 50.000 0.00 0.00 32.73 3.85
648 684 4.394712 CCCCCGTCTGGACTGTGC 62.395 72.222 0.00 0.00 37.49 4.57
652 688 4.640690 ACTGCCCCCGTCTGGACT 62.641 66.667 0.00 0.00 37.49 3.85
666 702 0.944386 CAAGACGGACCCACAAACTG 59.056 55.000 0.00 0.00 0.00 3.16
667 703 0.179029 CCAAGACGGACCCACAAACT 60.179 55.000 0.00 0.00 36.56 2.66
669 705 0.107831 CTCCAAGACGGACCCACAAA 59.892 55.000 0.00 0.00 39.64 2.83
671 707 0.544357 ATCTCCAAGACGGACCCACA 60.544 55.000 0.00 0.00 39.64 4.17
673 709 1.899437 GCATCTCCAAGACGGACCCA 61.899 60.000 0.00 0.00 39.64 4.51
674 710 1.153349 GCATCTCCAAGACGGACCC 60.153 63.158 0.00 0.00 39.64 4.46
686 738 9.632807 CGCTCTTATATATTATTAGGGCATCTC 57.367 37.037 4.54 0.00 31.83 2.75
718 771 0.546598 CCCAATCCGAGCTAAGGGTT 59.453 55.000 7.75 4.29 30.98 4.11
721 774 1.227973 GGCCCAATCCGAGCTAAGG 60.228 63.158 0.00 1.40 0.00 2.69
750 803 3.019783 TTGGGACCCAACTGGCAA 58.980 55.556 22.74 0.00 38.75 4.52
792 845 2.959484 CGGTCAGTGCAGGGTCCAT 61.959 63.158 0.00 0.00 0.00 3.41
880 943 5.180680 GCTAGGGTTTCAACAAGTACGATTT 59.819 40.000 0.00 0.00 0.00 2.17
945 1008 1.594331 GAGTTTGGTGCTTTCTCGGT 58.406 50.000 0.00 0.00 0.00 4.69
1207 1272 3.421741 CTTGCAACGAACAGACGAAAAA 58.578 40.909 0.00 0.00 37.03 1.94
1226 1291 1.729586 TGTAGTCCCTGAACTGCCTT 58.270 50.000 0.00 0.00 31.59 4.35
1569 1647 4.082571 GGGTGACAGAATCTGACATTTTGG 60.083 45.833 18.20 0.00 38.24 3.28
1571 1649 3.753272 CGGGTGACAGAATCTGACATTTT 59.247 43.478 18.20 0.00 38.24 1.82
1605 1683 3.845781 TGGACAGGGAGAATATTGCTC 57.154 47.619 0.00 0.00 0.00 4.26
1662 1740 2.955660 CTGGTGTTTTAGTCCAAGGCAA 59.044 45.455 0.00 0.00 0.00 4.52
1675 1753 1.042559 CCACTTGGGTGCTGGTGTTT 61.043 55.000 0.00 0.00 41.75 2.83
1756 1834 2.024846 TCCAAGAAGGGGAAAACACACA 60.025 45.455 0.00 0.00 38.24 3.72
1927 2012 6.833416 TCAGCATAGGCCTTAATGTAAATGTT 59.167 34.615 12.58 0.08 42.56 2.71
2026 2111 4.219944 ACTCCAACAGCGTAGATAGTTCAA 59.780 41.667 0.00 0.00 0.00 2.69
2233 2322 7.661437 ACAAACTGATGCTTCATACTTGAGTAA 59.339 33.333 17.78 0.00 33.76 2.24
2234 2323 7.161404 ACAAACTGATGCTTCATACTTGAGTA 58.839 34.615 17.78 0.00 32.27 2.59
2784 2874 6.490566 AAATCATAGTTAAACCGTGACCAC 57.509 37.500 0.00 0.00 0.00 4.16
3265 3355 1.488812 ACTGACTGGTGTGGTTGCTTA 59.511 47.619 0.00 0.00 0.00 3.09
3389 3480 2.030363 CCAAAGCCTGCACACGAAAATA 60.030 45.455 0.00 0.00 0.00 1.40
3475 3566 0.666577 ACCGGAGTTTTCGAAGCTCG 60.667 55.000 9.46 15.26 39.36 5.03
3673 3764 1.885887 GGCTGTGTATTGCCTCACAAA 59.114 47.619 0.00 0.00 45.26 2.83
3774 3866 8.989653 TTCTGTTCATGTGTATTATGACGTTA 57.010 30.769 0.00 0.00 34.50 3.18
4386 4491 5.353394 AAGTTCAAACAGGACTACACAGA 57.647 39.130 0.00 0.00 0.00 3.41
4420 4525 1.966451 GGGGCGTGGTCAGACTTTG 60.966 63.158 0.00 0.00 0.00 2.77
4524 4629 2.616842 GGTGGCAATATACCTTCCAACG 59.383 50.000 0.00 0.00 34.11 4.10
4756 4863 6.207614 GGAAATCTATGGCCTAAAATGGAGAC 59.792 42.308 3.32 0.00 0.00 3.36
4822 4929 1.588404 CTTACCATAGCTTCACGTGCG 59.412 52.381 11.67 5.45 35.28 5.34
4856 4963 1.374947 GGCAGCCACTGAACCAGTA 59.625 57.895 6.55 0.00 43.43 2.74
4872 4982 0.740737 ATTAAGCACGATTGGCTGGC 59.259 50.000 0.00 0.00 41.66 4.85
5032 5142 9.908152 GCATTACACCTTTAAAATTAGAACAGT 57.092 29.630 0.00 0.00 0.00 3.55
5169 5279 2.076100 CAAAGTCGCTACAAGGATGCA 58.924 47.619 0.00 0.00 0.00 3.96
5258 5370 0.457853 CTTTTCCGCCTCGTCGATGA 60.458 55.000 7.21 7.21 0.00 2.92
5259 5371 0.457853 TCTTTTCCGCCTCGTCGATG 60.458 55.000 0.00 0.00 0.00 3.84
5315 5427 5.458452 GTGTTTGCGAAGTTTCAATCAATCA 59.542 36.000 0.00 0.00 0.00 2.57
5465 5578 5.132816 CCAATAGGAATAGGGAAGGAGTTGT 59.867 44.000 0.00 0.00 36.89 3.32
5517 5780 4.498177 GCCAAAACCACAGAAGAAAGACTC 60.498 45.833 0.00 0.00 0.00 3.36
5518 5781 3.381590 GCCAAAACCACAGAAGAAAGACT 59.618 43.478 0.00 0.00 0.00 3.24
5519 5782 3.490933 GGCCAAAACCACAGAAGAAAGAC 60.491 47.826 0.00 0.00 0.00 3.01
5520 5783 2.693074 GGCCAAAACCACAGAAGAAAGA 59.307 45.455 0.00 0.00 0.00 2.52
5521 5784 2.430332 TGGCCAAAACCACAGAAGAAAG 59.570 45.455 0.61 0.00 33.75 2.62
5522 5785 2.430332 CTGGCCAAAACCACAGAAGAAA 59.570 45.455 7.01 0.00 35.33 2.52
5523 5786 2.031120 CTGGCCAAAACCACAGAAGAA 58.969 47.619 7.01 0.00 35.33 2.52
5524 5787 1.214175 TCTGGCCAAAACCACAGAAGA 59.786 47.619 7.01 0.00 37.06 2.87
5525 5788 1.691196 TCTGGCCAAAACCACAGAAG 58.309 50.000 7.01 0.00 37.06 2.85
5526 5789 2.364970 CAATCTGGCCAAAACCACAGAA 59.635 45.455 7.01 0.00 42.55 3.02
5527 5790 1.962807 CAATCTGGCCAAAACCACAGA 59.037 47.619 7.01 0.00 43.33 3.41
5528 5791 1.606224 GCAATCTGGCCAAAACCACAG 60.606 52.381 7.01 0.00 35.33 3.66
5529 5792 0.392336 GCAATCTGGCCAAAACCACA 59.608 50.000 7.01 0.00 35.33 4.17
5530 5793 0.392336 TGCAATCTGGCCAAAACCAC 59.608 50.000 7.01 0.00 35.33 4.16
5531 5794 0.680618 CTGCAATCTGGCCAAAACCA 59.319 50.000 7.01 0.00 38.29 3.67
5532 5795 0.681175 ACTGCAATCTGGCCAAAACC 59.319 50.000 7.01 0.00 0.00 3.27
5533 5796 1.340889 TGACTGCAATCTGGCCAAAAC 59.659 47.619 7.01 0.00 0.00 2.43
5534 5797 1.702182 TGACTGCAATCTGGCCAAAA 58.298 45.000 7.01 0.00 0.00 2.44
5535 5798 1.702182 TTGACTGCAATCTGGCCAAA 58.298 45.000 7.01 0.00 0.00 3.28
5536 5799 1.702182 TTTGACTGCAATCTGGCCAA 58.298 45.000 7.01 0.00 33.25 4.52
5537 5800 1.927487 ATTTGACTGCAATCTGGCCA 58.073 45.000 4.71 4.71 33.25 5.36
5538 5801 2.231964 TCAATTTGACTGCAATCTGGCC 59.768 45.455 0.00 0.00 33.25 5.36
5539 5802 3.248266 GTCAATTTGACTGCAATCTGGC 58.752 45.455 19.90 0.00 43.73 4.85
5540 5803 3.058016 ACGTCAATTTGACTGCAATCTGG 60.058 43.478 23.29 9.88 44.85 3.86
5541 5804 4.151258 ACGTCAATTTGACTGCAATCTG 57.849 40.909 23.29 10.47 44.85 2.90
5542 5805 3.189287 GGACGTCAATTTGACTGCAATCT 59.811 43.478 23.29 5.07 44.85 2.40
5543 5806 3.189287 AGGACGTCAATTTGACTGCAATC 59.811 43.478 23.29 13.79 44.85 2.67
5544 5807 3.149196 AGGACGTCAATTTGACTGCAAT 58.851 40.909 23.29 7.22 44.85 3.56
5545 5808 2.571212 AGGACGTCAATTTGACTGCAA 58.429 42.857 23.29 0.00 44.85 4.08
5546 5809 2.254546 AGGACGTCAATTTGACTGCA 57.745 45.000 23.29 0.00 44.85 4.41
5547 5810 3.994392 TCTTAGGACGTCAATTTGACTGC 59.006 43.478 23.29 16.24 44.85 4.40
5548 5811 4.092091 GCTCTTAGGACGTCAATTTGACTG 59.908 45.833 23.29 18.86 44.85 3.51
5549 5812 4.246458 GCTCTTAGGACGTCAATTTGACT 58.754 43.478 23.29 12.79 44.85 3.41
5550 5813 3.994392 TGCTCTTAGGACGTCAATTTGAC 59.006 43.478 18.91 17.76 43.65 3.18
5551 5814 4.265904 TGCTCTTAGGACGTCAATTTGA 57.734 40.909 18.91 7.51 0.00 2.69
5552 5815 4.872691 AGATGCTCTTAGGACGTCAATTTG 59.127 41.667 18.91 3.29 0.00 2.32
5553 5816 5.091261 AGATGCTCTTAGGACGTCAATTT 57.909 39.130 18.91 2.13 0.00 1.82
5554 5817 4.442192 GGAGATGCTCTTAGGACGTCAATT 60.442 45.833 18.91 4.78 0.00 2.32
5555 5818 3.068873 GGAGATGCTCTTAGGACGTCAAT 59.931 47.826 18.91 7.85 0.00 2.57
5556 5819 2.427453 GGAGATGCTCTTAGGACGTCAA 59.573 50.000 18.91 2.78 0.00 3.18
5557 5820 2.025155 GGAGATGCTCTTAGGACGTCA 58.975 52.381 18.91 0.00 0.00 4.35
5558 5821 2.025155 TGGAGATGCTCTTAGGACGTC 58.975 52.381 7.13 7.13 0.00 4.34
5559 5822 2.145397 TGGAGATGCTCTTAGGACGT 57.855 50.000 0.00 0.00 0.00 4.34
5560 5823 2.796383 CGTTGGAGATGCTCTTAGGACG 60.796 54.545 0.00 0.00 0.00 4.79
5561 5824 2.482142 CCGTTGGAGATGCTCTTAGGAC 60.482 54.545 0.00 0.00 0.00 3.85
5562 5825 1.757118 CCGTTGGAGATGCTCTTAGGA 59.243 52.381 0.00 0.00 0.00 2.94
5563 5826 1.808133 GCCGTTGGAGATGCTCTTAGG 60.808 57.143 0.00 0.00 0.00 2.69
5564 5827 1.137872 AGCCGTTGGAGATGCTCTTAG 59.862 52.381 0.00 0.00 0.00 2.18
5565 5828 1.137086 GAGCCGTTGGAGATGCTCTTA 59.863 52.381 0.00 0.00 45.21 2.10
5566 5829 0.107945 GAGCCGTTGGAGATGCTCTT 60.108 55.000 0.00 0.00 45.21 2.85
5567 5830 1.519719 GAGCCGTTGGAGATGCTCT 59.480 57.895 0.00 0.00 45.21 4.09
5568 5831 4.116878 GAGCCGTTGGAGATGCTC 57.883 61.111 0.00 0.00 42.89 4.26
5569 5832 2.586792 GGAGCCGTTGGAGATGCT 59.413 61.111 0.00 0.00 36.62 3.79
5570 5833 2.514824 GGGAGCCGTTGGAGATGC 60.515 66.667 0.00 0.00 0.00 3.91
5571 5834 1.048724 TAGGGGAGCCGTTGGAGATG 61.049 60.000 0.00 0.00 0.00 2.90
5572 5835 0.104934 ATAGGGGAGCCGTTGGAGAT 60.105 55.000 0.00 0.00 0.00 2.75
5573 5836 1.048724 CATAGGGGAGCCGTTGGAGA 61.049 60.000 0.00 0.00 0.00 3.71
5574 5837 1.338136 ACATAGGGGAGCCGTTGGAG 61.338 60.000 0.00 0.00 0.00 3.86
5575 5838 1.306654 ACATAGGGGAGCCGTTGGA 60.307 57.895 0.00 0.00 0.00 3.53
5576 5839 1.146263 GACATAGGGGAGCCGTTGG 59.854 63.158 0.00 0.00 0.00 3.77
5577 5840 1.410004 TAGACATAGGGGAGCCGTTG 58.590 55.000 0.00 0.00 0.00 4.10
5578 5841 2.170012 TTAGACATAGGGGAGCCGTT 57.830 50.000 0.00 0.00 0.00 4.44
5579 5842 2.249139 GATTAGACATAGGGGAGCCGT 58.751 52.381 0.00 0.00 0.00 5.68
5580 5843 1.202582 CGATTAGACATAGGGGAGCCG 59.797 57.143 0.00 0.00 0.00 5.52
5581 5844 1.066787 GCGATTAGACATAGGGGAGCC 60.067 57.143 0.00 0.00 0.00 4.70
5582 5845 1.896465 AGCGATTAGACATAGGGGAGC 59.104 52.381 0.00 0.00 0.00 4.70
5583 5846 2.894126 ACAGCGATTAGACATAGGGGAG 59.106 50.000 0.00 0.00 0.00 4.30
5584 5847 2.958818 ACAGCGATTAGACATAGGGGA 58.041 47.619 0.00 0.00 0.00 4.81
5585 5848 3.753294 AACAGCGATTAGACATAGGGG 57.247 47.619 0.00 0.00 0.00 4.79
5586 5849 4.680110 CGTAAACAGCGATTAGACATAGGG 59.320 45.833 0.00 0.00 0.00 3.53
5587 5850 4.680110 CCGTAAACAGCGATTAGACATAGG 59.320 45.833 0.00 0.00 0.00 2.57
5588 5851 4.148348 GCCGTAAACAGCGATTAGACATAG 59.852 45.833 0.00 0.00 0.00 2.23
5589 5852 4.046462 GCCGTAAACAGCGATTAGACATA 58.954 43.478 0.00 0.00 0.00 2.29
5590 5853 2.864343 GCCGTAAACAGCGATTAGACAT 59.136 45.455 0.00 0.00 0.00 3.06
5591 5854 2.264813 GCCGTAAACAGCGATTAGACA 58.735 47.619 0.00 0.00 0.00 3.41
5592 5855 2.264813 TGCCGTAAACAGCGATTAGAC 58.735 47.619 0.00 0.00 0.00 2.59
5593 5856 2.658373 TGCCGTAAACAGCGATTAGA 57.342 45.000 0.00 0.00 0.00 2.10
5594 5857 2.671396 ACTTGCCGTAAACAGCGATTAG 59.329 45.455 0.00 0.00 0.00 1.73
5595 5858 2.690786 ACTTGCCGTAAACAGCGATTA 58.309 42.857 0.00 0.00 0.00 1.75
5596 5859 1.519408 ACTTGCCGTAAACAGCGATT 58.481 45.000 0.00 0.00 0.00 3.34
5597 5860 1.196808 CAACTTGCCGTAAACAGCGAT 59.803 47.619 0.00 0.00 0.00 4.58
5598 5861 0.584396 CAACTTGCCGTAAACAGCGA 59.416 50.000 0.00 0.00 0.00 4.93
5599 5862 0.385473 CCAACTTGCCGTAAACAGCG 60.385 55.000 0.00 0.00 0.00 5.18
5600 5863 0.039527 CCCAACTTGCCGTAAACAGC 60.040 55.000 0.00 0.00 0.00 4.40
5601 5864 0.596082 CCCCAACTTGCCGTAAACAG 59.404 55.000 0.00 0.00 0.00 3.16
5602 5865 0.824182 CCCCCAACTTGCCGTAAACA 60.824 55.000 0.00 0.00 0.00 2.83
5603 5866 1.961378 CCCCCAACTTGCCGTAAAC 59.039 57.895 0.00 0.00 0.00 2.01
5604 5867 4.504112 CCCCCAACTTGCCGTAAA 57.496 55.556 0.00 0.00 0.00 2.01
5618 5881 1.076513 TGAAGAGGCCTTTTTACCCCC 59.923 52.381 6.77 0.00 31.62 5.40
5619 5882 2.561419 GTTGAAGAGGCCTTTTTACCCC 59.439 50.000 6.77 0.00 31.62 4.95
5620 5883 2.228103 CGTTGAAGAGGCCTTTTTACCC 59.772 50.000 6.77 0.00 31.62 3.69
5621 5884 2.228103 CCGTTGAAGAGGCCTTTTTACC 59.772 50.000 6.77 0.00 31.62 2.85
5622 5885 2.882761 ACCGTTGAAGAGGCCTTTTTAC 59.117 45.455 6.77 9.30 31.62 2.01
5623 5886 3.217681 ACCGTTGAAGAGGCCTTTTTA 57.782 42.857 6.77 0.09 31.62 1.52
5624 5887 2.067365 ACCGTTGAAGAGGCCTTTTT 57.933 45.000 6.77 4.66 31.62 1.94
5625 5888 1.954382 GAACCGTTGAAGAGGCCTTTT 59.046 47.619 6.77 7.77 31.62 2.27
5626 5889 1.605753 GAACCGTTGAAGAGGCCTTT 58.394 50.000 6.77 0.00 31.62 3.11
5627 5890 0.250770 GGAACCGTTGAAGAGGCCTT 60.251 55.000 6.77 0.00 34.81 4.35
5628 5891 1.128188 AGGAACCGTTGAAGAGGCCT 61.128 55.000 3.86 3.86 0.00 5.19
5629 5892 0.955919 CAGGAACCGTTGAAGAGGCC 60.956 60.000 0.00 0.00 0.00 5.19
5630 5893 0.034896 TCAGGAACCGTTGAAGAGGC 59.965 55.000 0.00 0.00 0.00 4.70
5631 5894 2.543777 TTCAGGAACCGTTGAAGAGG 57.456 50.000 0.00 0.00 0.00 3.69
5632 5895 3.248602 CACTTTCAGGAACCGTTGAAGAG 59.751 47.826 0.00 0.00 35.01 2.85
5633 5896 3.202906 CACTTTCAGGAACCGTTGAAGA 58.797 45.455 0.00 0.00 35.01 2.87
5634 5897 2.290641 CCACTTTCAGGAACCGTTGAAG 59.709 50.000 0.00 0.00 35.01 3.02
5635 5898 2.294074 CCACTTTCAGGAACCGTTGAA 58.706 47.619 0.00 0.00 0.00 2.69
5636 5899 1.961793 CCACTTTCAGGAACCGTTGA 58.038 50.000 0.00 0.00 0.00 3.18
5637 5900 0.310854 GCCACTTTCAGGAACCGTTG 59.689 55.000 0.00 0.00 0.00 4.10
5638 5901 0.822121 GGCCACTTTCAGGAACCGTT 60.822 55.000 0.00 0.00 0.00 4.44
5639 5902 1.228154 GGCCACTTTCAGGAACCGT 60.228 57.895 0.00 0.00 0.00 4.83
5640 5903 0.609131 ATGGCCACTTTCAGGAACCG 60.609 55.000 8.16 0.00 0.00 4.44
5641 5904 2.492088 GTTATGGCCACTTTCAGGAACC 59.508 50.000 8.16 0.00 0.00 3.62
5642 5905 3.421844 AGTTATGGCCACTTTCAGGAAC 58.578 45.455 8.16 2.60 0.00 3.62
5643 5906 3.806949 AGTTATGGCCACTTTCAGGAA 57.193 42.857 8.16 0.00 0.00 3.36
5644 5907 3.806949 AAGTTATGGCCACTTTCAGGA 57.193 42.857 8.16 0.00 29.75 3.86
5645 5908 5.010282 AGTTAAGTTATGGCCACTTTCAGG 58.990 41.667 8.16 0.00 35.95 3.86
5646 5909 5.163854 CGAGTTAAGTTATGGCCACTTTCAG 60.164 44.000 8.16 0.26 35.95 3.02
5647 5910 4.693566 CGAGTTAAGTTATGGCCACTTTCA 59.306 41.667 8.16 0.00 35.95 2.69
5648 5911 4.933400 TCGAGTTAAGTTATGGCCACTTTC 59.067 41.667 8.16 1.03 35.95 2.62
5649 5912 4.901868 TCGAGTTAAGTTATGGCCACTTT 58.098 39.130 8.16 2.51 35.95 2.66
5650 5913 4.222145 TCTCGAGTTAAGTTATGGCCACTT 59.778 41.667 8.16 10.32 38.13 3.16
5651 5914 3.767673 TCTCGAGTTAAGTTATGGCCACT 59.232 43.478 8.16 0.00 0.00 4.00
5652 5915 4.113354 CTCTCGAGTTAAGTTATGGCCAC 58.887 47.826 8.16 0.00 0.00 5.01
5653 5916 3.132289 CCTCTCGAGTTAAGTTATGGCCA 59.868 47.826 8.56 8.56 0.00 5.36
5654 5917 3.718815 CCTCTCGAGTTAAGTTATGGCC 58.281 50.000 13.13 0.00 0.00 5.36
5655 5918 3.124560 GCCTCTCGAGTTAAGTTATGGC 58.875 50.000 13.13 9.26 0.00 4.40
5656 5919 3.492829 GGGCCTCTCGAGTTAAGTTATGG 60.493 52.174 13.13 3.62 0.00 2.74
5657 5920 3.492829 GGGGCCTCTCGAGTTAAGTTATG 60.493 52.174 13.13 0.00 0.00 1.90
5658 5921 2.699321 GGGGCCTCTCGAGTTAAGTTAT 59.301 50.000 13.13 0.00 0.00 1.89
5659 5922 2.105766 GGGGCCTCTCGAGTTAAGTTA 58.894 52.381 13.13 0.00 0.00 2.24
5660 5923 0.903236 GGGGCCTCTCGAGTTAAGTT 59.097 55.000 13.13 0.00 0.00 2.66
5661 5924 0.976590 GGGGGCCTCTCGAGTTAAGT 60.977 60.000 13.13 0.00 0.00 2.24
5662 5925 1.823976 GGGGGCCTCTCGAGTTAAG 59.176 63.158 13.13 2.20 0.00 1.85
5663 5926 2.056223 CGGGGGCCTCTCGAGTTAA 61.056 63.158 13.13 0.00 0.00 2.01
5664 5927 1.925285 TACGGGGGCCTCTCGAGTTA 61.925 60.000 18.79 0.20 0.00 2.24
5665 5928 2.793317 TTACGGGGGCCTCTCGAGTT 62.793 60.000 18.79 1.10 0.00 3.01
5666 5929 2.793317 TTTACGGGGGCCTCTCGAGT 62.793 60.000 18.79 9.24 0.00 4.18
5677 5940 2.156917 GAAAAGGACCAGTTTACGGGG 58.843 52.381 4.13 0.00 35.41 5.73
5705 5968 7.044181 CCTTGTGCTACTTCATGATCTTCTTA 58.956 38.462 0.00 0.00 0.00 2.10
5706 5969 5.879223 CCTTGTGCTACTTCATGATCTTCTT 59.121 40.000 0.00 0.00 0.00 2.52
5707 5970 5.046014 ACCTTGTGCTACTTCATGATCTTCT 60.046 40.000 0.00 0.00 0.00 2.85
5708 5971 5.181748 ACCTTGTGCTACTTCATGATCTTC 58.818 41.667 0.00 0.00 0.00 2.87
5741 6004 8.375493 TCATTATAACAGTAAGGTGGAGTTCT 57.625 34.615 0.00 0.00 0.00 3.01
5742 6005 8.258708 ACTCATTATAACAGTAAGGTGGAGTTC 58.741 37.037 0.00 0.00 0.00 3.01
5763 6026 3.498774 AGTTGTTCCTTCAGCACTCAT 57.501 42.857 0.00 0.00 0.00 2.90
5806 6069 1.274447 CCCGTCTCCCGTTTCTAAAGT 59.726 52.381 0.00 0.00 33.66 2.66
5822 6085 3.963129 TCTCATTTAAGATTTGGCCCGT 58.037 40.909 0.00 0.00 0.00 5.28
5823 6086 4.157656 TGTTCTCATTTAAGATTTGGCCCG 59.842 41.667 0.00 0.00 0.00 6.13
5874 6137 2.487934 CACTGAGGGATTTCCGCTATG 58.512 52.381 0.00 0.00 41.52 2.23
5887 6150 1.867595 ATTTGGAGGCCCCACTGAGG 61.868 60.000 12.07 0.00 46.62 3.86
5888 6151 0.040204 AATTTGGAGGCCCCACTGAG 59.960 55.000 12.07 0.00 46.62 3.35
5889 6152 0.039618 GAATTTGGAGGCCCCACTGA 59.960 55.000 12.07 3.23 46.62 3.41
5890 6153 0.251742 TGAATTTGGAGGCCCCACTG 60.252 55.000 12.07 0.00 46.62 3.66
5891 6154 0.486879 TTGAATTTGGAGGCCCCACT 59.513 50.000 12.07 1.35 46.62 4.00
5892 6155 1.347062 TTTGAATTTGGAGGCCCCAC 58.653 50.000 12.07 2.70 46.62 4.61
5893 6156 2.340721 ATTTGAATTTGGAGGCCCCA 57.659 45.000 8.74 8.74 44.93 4.96
5894 6157 3.719268 AAATTTGAATTTGGAGGCCCC 57.281 42.857 0.00 0.03 37.24 5.80
5954 6217 9.383519 CCTTCAGTATAGCTGTATTTTTCAGAA 57.616 33.333 0.00 0.00 45.23 3.02
5955 6218 7.495934 GCCTTCAGTATAGCTGTATTTTTCAGA 59.504 37.037 0.00 0.00 45.23 3.27
5956 6219 7.280876 TGCCTTCAGTATAGCTGTATTTTTCAG 59.719 37.037 0.00 0.00 45.23 3.02
5957 6220 7.109501 TGCCTTCAGTATAGCTGTATTTTTCA 58.890 34.615 0.00 0.00 45.23 2.69
5958 6221 7.553881 TGCCTTCAGTATAGCTGTATTTTTC 57.446 36.000 0.00 0.00 45.23 2.29
5959 6222 9.627123 TTATGCCTTCAGTATAGCTGTATTTTT 57.373 29.630 0.00 0.00 45.23 1.94
5960 6223 9.057089 GTTATGCCTTCAGTATAGCTGTATTTT 57.943 33.333 0.00 0.00 45.23 1.82
5961 6224 8.210946 TGTTATGCCTTCAGTATAGCTGTATTT 58.789 33.333 0.00 0.00 45.23 1.40
5962 6225 7.657761 GTGTTATGCCTTCAGTATAGCTGTATT 59.342 37.037 0.00 0.00 45.23 1.89
5963 6226 7.155328 GTGTTATGCCTTCAGTATAGCTGTAT 58.845 38.462 0.00 0.00 45.23 2.29
5964 6227 6.097696 TGTGTTATGCCTTCAGTATAGCTGTA 59.902 38.462 0.00 0.00 45.23 2.74
5965 6228 5.104941 TGTGTTATGCCTTCAGTATAGCTGT 60.105 40.000 0.00 0.00 45.23 4.40
5966 6229 5.359756 TGTGTTATGCCTTCAGTATAGCTG 58.640 41.667 0.00 0.00 46.34 4.24
5967 6230 5.614324 TGTGTTATGCCTTCAGTATAGCT 57.386 39.130 0.00 0.00 0.00 3.32
5968 6231 5.760253 ACATGTGTTATGCCTTCAGTATAGC 59.240 40.000 0.00 0.00 0.00 2.97
5969 6232 6.763135 ACACATGTGTTATGCCTTCAGTATAG 59.237 38.462 25.76 0.00 41.83 1.31
5970 6233 6.538381 CACACATGTGTTATGCCTTCAGTATA 59.462 38.462 28.64 0.00 42.83 1.47
5971 6234 5.355071 CACACATGTGTTATGCCTTCAGTAT 59.645 40.000 28.64 0.00 42.83 2.12
5972 6235 4.694982 CACACATGTGTTATGCCTTCAGTA 59.305 41.667 28.64 0.00 42.83 2.74
5973 6236 3.503363 CACACATGTGTTATGCCTTCAGT 59.497 43.478 28.64 0.00 42.83 3.41
5974 6237 4.087510 CACACATGTGTTATGCCTTCAG 57.912 45.455 28.64 9.80 42.83 3.02
5987 6250 7.542890 TGAACTGAAAATTTACACACACATGT 58.457 30.769 0.00 0.00 40.80 3.21
5988 6251 7.984002 TGAACTGAAAATTTACACACACATG 57.016 32.000 0.00 0.00 0.00 3.21
5989 6252 8.994429 TTTGAACTGAAAATTTACACACACAT 57.006 26.923 0.00 0.00 0.00 3.21
5990 6253 8.818141 TTTTGAACTGAAAATTTACACACACA 57.182 26.923 0.00 0.00 0.00 3.72
6004 6267 9.695526 CCTCATTTCAATGTATTTTGAACTGAA 57.304 29.630 15.90 5.83 46.03 3.02
6005 6268 8.306038 CCCTCATTTCAATGTATTTTGAACTGA 58.694 33.333 14.93 14.93 45.33 3.41
6006 6269 7.063780 GCCCTCATTTCAATGTATTTTGAACTG 59.936 37.037 9.63 9.63 43.38 3.16
6007 6270 7.038799 AGCCCTCATTTCAATGTATTTTGAACT 60.039 33.333 0.00 0.00 43.38 3.01
6008 6271 7.063780 CAGCCCTCATTTCAATGTATTTTGAAC 59.936 37.037 0.00 0.00 43.38 3.18
6009 6272 7.098477 CAGCCCTCATTTCAATGTATTTTGAA 58.902 34.615 0.00 0.00 42.33 2.69
6010 6273 6.211184 ACAGCCCTCATTTCAATGTATTTTGA 59.789 34.615 0.00 0.00 37.65 2.69
6011 6274 6.311935 CACAGCCCTCATTTCAATGTATTTTG 59.688 38.462 0.00 0.00 37.65 2.44
6012 6275 6.400568 CACAGCCCTCATTTCAATGTATTTT 58.599 36.000 0.00 0.00 37.65 1.82
6013 6276 5.625197 GCACAGCCCTCATTTCAATGTATTT 60.625 40.000 0.00 0.00 37.65 1.40
6014 6277 4.142093 GCACAGCCCTCATTTCAATGTATT 60.142 41.667 0.00 0.00 37.65 1.89
6015 6278 3.382546 GCACAGCCCTCATTTCAATGTAT 59.617 43.478 0.00 0.00 37.65 2.29
6016 6279 2.754552 GCACAGCCCTCATTTCAATGTA 59.245 45.455 0.00 0.00 37.65 2.29
6017 6280 1.547372 GCACAGCCCTCATTTCAATGT 59.453 47.619 0.00 0.00 37.65 2.71
6018 6281 1.822990 AGCACAGCCCTCATTTCAATG 59.177 47.619 0.00 0.00 37.75 2.82
6019 6282 2.226962 AGCACAGCCCTCATTTCAAT 57.773 45.000 0.00 0.00 0.00 2.57
6020 6283 2.877097 TAGCACAGCCCTCATTTCAA 57.123 45.000 0.00 0.00 0.00 2.69
6021 6284 2.877097 TTAGCACAGCCCTCATTTCA 57.123 45.000 0.00 0.00 0.00 2.69
6022 6285 4.218417 TCTTTTTAGCACAGCCCTCATTTC 59.782 41.667 0.00 0.00 0.00 2.17
6023 6286 4.021981 GTCTTTTTAGCACAGCCCTCATTT 60.022 41.667 0.00 0.00 0.00 2.32
6024 6287 3.507622 GTCTTTTTAGCACAGCCCTCATT 59.492 43.478 0.00 0.00 0.00 2.57
6025 6288 3.084786 GTCTTTTTAGCACAGCCCTCAT 58.915 45.455 0.00 0.00 0.00 2.90
6026 6289 2.158682 TGTCTTTTTAGCACAGCCCTCA 60.159 45.455 0.00 0.00 0.00 3.86
6027 6290 2.504367 TGTCTTTTTAGCACAGCCCTC 58.496 47.619 0.00 0.00 0.00 4.30
6028 6291 2.656947 TGTCTTTTTAGCACAGCCCT 57.343 45.000 0.00 0.00 0.00 5.19
6029 6292 3.726291 TTTGTCTTTTTAGCACAGCCC 57.274 42.857 0.00 0.00 0.00 5.19
6030 6293 5.126396 AGATTTGTCTTTTTAGCACAGCC 57.874 39.130 0.00 0.00 0.00 4.85
6031 6294 6.317857 CCTAGATTTGTCTTTTTAGCACAGC 58.682 40.000 0.00 0.00 0.00 4.40
6032 6295 6.623767 GCCCTAGATTTGTCTTTTTAGCACAG 60.624 42.308 0.00 0.00 0.00 3.66
6033 6296 5.183140 GCCCTAGATTTGTCTTTTTAGCACA 59.817 40.000 0.00 0.00 0.00 4.57
6034 6297 5.416013 AGCCCTAGATTTGTCTTTTTAGCAC 59.584 40.000 0.00 0.00 0.00 4.40
6035 6298 5.415701 CAGCCCTAGATTTGTCTTTTTAGCA 59.584 40.000 0.00 0.00 0.00 3.49
6036 6299 5.416013 ACAGCCCTAGATTTGTCTTTTTAGC 59.584 40.000 0.00 0.00 0.00 3.09
6037 6300 7.454260 AACAGCCCTAGATTTGTCTTTTTAG 57.546 36.000 0.00 0.00 0.00 1.85
6038 6301 7.833285 AAACAGCCCTAGATTTGTCTTTTTA 57.167 32.000 0.00 0.00 0.00 1.52
6039 6302 6.731292 AAACAGCCCTAGATTTGTCTTTTT 57.269 33.333 0.00 0.00 0.00 1.94
6040 6303 7.286775 TGTTAAACAGCCCTAGATTTGTCTTTT 59.713 33.333 0.00 0.00 0.00 2.27
6041 6304 6.775629 TGTTAAACAGCCCTAGATTTGTCTTT 59.224 34.615 0.00 0.00 0.00 2.52
6042 6305 6.206829 GTGTTAAACAGCCCTAGATTTGTCTT 59.793 38.462 0.00 0.00 0.00 3.01
6043 6306 5.705905 GTGTTAAACAGCCCTAGATTTGTCT 59.294 40.000 0.00 0.00 0.00 3.41
6044 6307 5.472137 TGTGTTAAACAGCCCTAGATTTGTC 59.528 40.000 0.00 0.00 33.78 3.18
6045 6308 5.381757 TGTGTTAAACAGCCCTAGATTTGT 58.618 37.500 0.00 0.00 33.78 2.83
6046 6309 5.957842 TGTGTTAAACAGCCCTAGATTTG 57.042 39.130 0.00 0.00 33.78 2.32
6047 6310 6.245408 TCATGTGTTAAACAGCCCTAGATTT 58.755 36.000 0.00 0.00 43.64 2.17
6048 6311 5.815581 TCATGTGTTAAACAGCCCTAGATT 58.184 37.500 0.00 0.00 43.64 2.40
6049 6312 5.435686 TCATGTGTTAAACAGCCCTAGAT 57.564 39.130 0.00 0.00 43.64 1.98
6050 6313 4.901197 TCATGTGTTAAACAGCCCTAGA 57.099 40.909 0.00 0.00 43.64 2.43
6051 6314 4.943705 ACATCATGTGTTAAACAGCCCTAG 59.056 41.667 0.00 0.00 43.64 3.02
6052 6315 4.917385 ACATCATGTGTTAAACAGCCCTA 58.083 39.130 0.00 0.00 43.64 3.53
6053 6316 3.766545 ACATCATGTGTTAAACAGCCCT 58.233 40.909 0.00 0.00 43.64 5.19
6054 6317 5.835113 ATACATCATGTGTTAAACAGCCC 57.165 39.130 0.00 0.00 43.64 5.19
6055 6318 6.851609 TGAATACATCATGTGTTAAACAGCC 58.148 36.000 0.00 0.00 43.64 4.85
6071 6334 2.785269 TGGCTTGGGAGGATGAATACAT 59.215 45.455 0.00 0.00 39.67 2.29
6072 6335 2.204463 TGGCTTGGGAGGATGAATACA 58.796 47.619 0.00 0.00 0.00 2.29
6073 6336 3.152341 CATGGCTTGGGAGGATGAATAC 58.848 50.000 0.00 0.00 0.00 1.89
6074 6337 3.055328 TCATGGCTTGGGAGGATGAATA 58.945 45.455 0.09 0.00 0.00 1.75
6075 6338 1.854939 TCATGGCTTGGGAGGATGAAT 59.145 47.619 0.09 0.00 0.00 2.57
6076 6339 1.297968 TCATGGCTTGGGAGGATGAA 58.702 50.000 0.09 0.00 0.00 2.57
6077 6340 1.297968 TTCATGGCTTGGGAGGATGA 58.702 50.000 0.09 0.00 0.00 2.92
6078 6341 2.376695 ATTCATGGCTTGGGAGGATG 57.623 50.000 0.09 0.00 0.00 3.51
6079 6342 3.036091 CAAATTCATGGCTTGGGAGGAT 58.964 45.455 0.09 0.00 0.00 3.24
6080 6343 2.225343 ACAAATTCATGGCTTGGGAGGA 60.225 45.455 0.09 0.00 0.00 3.71
6081 6344 2.167075 GACAAATTCATGGCTTGGGAGG 59.833 50.000 0.09 0.00 0.00 4.30
6082 6345 3.094572 AGACAAATTCATGGCTTGGGAG 58.905 45.455 0.09 0.00 33.97 4.30
6083 6346 3.173953 AGACAAATTCATGGCTTGGGA 57.826 42.857 0.09 0.00 33.97 4.37
6084 6347 3.967332 AAGACAAATTCATGGCTTGGG 57.033 42.857 0.00 0.00 46.84 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.