Multiple sequence alignment - TraesCS2A01G262300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G262300 chr2A 100.000 3761 0 0 1 3761 413348948 413345188 0.000000e+00 6946.0
1 TraesCS2A01G262300 chr2A 93.382 408 27 0 1 408 773566811 773567218 4.160000e-169 604.0
2 TraesCS2A01G262300 chr2B 94.407 2360 78 22 566 2886 386105670 386108014 0.000000e+00 3578.0
3 TraesCS2A01G262300 chr2B 98.140 860 16 0 2902 3761 278840311 278841170 0.000000e+00 1500.0
4 TraesCS2A01G262300 chr2B 91.195 159 14 0 408 566 386105448 386105606 2.270000e-52 217.0
5 TraesCS2A01G262300 chr2B 94.444 54 1 1 644 695 386105779 386105832 8.660000e-12 82.4
6 TraesCS2A01G262300 chr2D 94.123 2229 52 25 712 2905 318257499 318259683 0.000000e+00 3317.0
7 TraesCS2A01G262300 chr2D 92.208 154 12 0 408 561 318257084 318257237 6.320000e-53 219.0
8 TraesCS2A01G262300 chr2D 94.326 141 7 1 555 695 318257372 318257511 8.180000e-52 215.0
9 TraesCS2A01G262300 chr1B 98.155 867 16 0 2895 3761 215012760 215011894 0.000000e+00 1513.0
10 TraesCS2A01G262300 chr6B 98.370 859 14 0 2903 3761 481038683 481037825 0.000000e+00 1509.0
11 TraesCS2A01G262300 chr6B 98.256 860 15 0 2902 3761 204558820 204559679 0.000000e+00 1506.0
12 TraesCS2A01G262300 chr5B 98.370 859 14 0 2903 3761 95135568 95134710 0.000000e+00 1509.0
13 TraesCS2A01G262300 chr5A 98.258 861 15 0 2901 3761 391970131 391970991 0.000000e+00 1507.0
14 TraesCS2A01G262300 chr5A 93.154 409 26 2 1 408 34247748 34248155 1.930000e-167 599.0
15 TraesCS2A01G262300 chr5A 93.137 408 27 1 1 408 66524348 66524754 6.950000e-167 597.0
16 TraesCS2A01G262300 chr3B 98.258 861 15 0 2901 3761 831402 830542 0.000000e+00 1507.0
17 TraesCS2A01G262300 chr3B 98.142 861 16 0 2901 3761 829455 828595 0.000000e+00 1502.0
18 TraesCS2A01G262300 chr3A 98.140 860 16 0 2902 3761 606522168 606521309 0.000000e+00 1500.0
19 TraesCS2A01G262300 chr6A 93.596 406 25 1 2 407 155215210 155215614 4.160000e-169 604.0
20 TraesCS2A01G262300 chr4D 93.382 408 26 1 1 408 273960567 273960973 1.490000e-168 603.0
21 TraesCS2A01G262300 chr4A 93.399 409 22 4 1 407 10943932 10943527 5.380000e-168 601.0
22 TraesCS2A01G262300 chr7D 93.137 408 27 1 1 408 428051058 428050652 6.950000e-167 597.0
23 TraesCS2A01G262300 chr7D 93.120 407 27 1 1 407 428044100 428043695 2.500000e-166 595.0
24 TraesCS2A01G262300 chr6D 93.137 408 27 1 1 408 143995370 143995776 6.950000e-167 597.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G262300 chr2A 413345188 413348948 3760 True 6946.000000 6946 100.000000 1 3761 1 chr2A.!!$R1 3760
1 TraesCS2A01G262300 chr2B 278840311 278841170 859 False 1500.000000 1500 98.140000 2902 3761 1 chr2B.!!$F1 859
2 TraesCS2A01G262300 chr2B 386105448 386108014 2566 False 1292.466667 3578 93.348667 408 2886 3 chr2B.!!$F2 2478
3 TraesCS2A01G262300 chr2D 318257084 318259683 2599 False 1250.333333 3317 93.552333 408 2905 3 chr2D.!!$F1 2497
4 TraesCS2A01G262300 chr1B 215011894 215012760 866 True 1513.000000 1513 98.155000 2895 3761 1 chr1B.!!$R1 866
5 TraesCS2A01G262300 chr6B 481037825 481038683 858 True 1509.000000 1509 98.370000 2903 3761 1 chr6B.!!$R1 858
6 TraesCS2A01G262300 chr6B 204558820 204559679 859 False 1506.000000 1506 98.256000 2902 3761 1 chr6B.!!$F1 859
7 TraesCS2A01G262300 chr5B 95134710 95135568 858 True 1509.000000 1509 98.370000 2903 3761 1 chr5B.!!$R1 858
8 TraesCS2A01G262300 chr5A 391970131 391970991 860 False 1507.000000 1507 98.258000 2901 3761 1 chr5A.!!$F3 860
9 TraesCS2A01G262300 chr3B 828595 831402 2807 True 1504.500000 1507 98.200000 2901 3761 2 chr3B.!!$R1 860
10 TraesCS2A01G262300 chr3A 606521309 606522168 859 True 1500.000000 1500 98.140000 2902 3761 1 chr3A.!!$R1 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.037232 AAGGCCTGCGACAGTAGAAC 60.037 55.0 5.69 0.00 31.28 3.01 F
192 193 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.0 18.91 13.48 43.13 2.92 F
213 214 0.102481 AGTCGAACGTGTGCAGAACT 59.898 50.0 0.00 0.00 0.00 3.01 F
547 548 0.110644 GCTTGCTGACGTTTCTTCCG 60.111 55.0 0.00 0.00 0.00 4.30 F
935 1179 0.186386 ACCCGACACAAATTTCCCCA 59.814 50.0 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2374 1.183030 TGTCCGTGTCCGATCCAGTT 61.183 55.000 0.0 0.0 35.63 3.16 R
2130 2395 2.283532 AGCTCTGCCTCCGTGTCT 60.284 61.111 0.0 0.0 0.00 3.41 R
2180 2451 3.728221 GTCGTCGTCATCATCATCAGAAG 59.272 47.826 0.0 0.0 0.00 2.85 R
2212 2483 4.537751 ACCTCGTATCCATCTGAAGAGAA 58.462 43.478 0.0 0.0 0.00 2.87 R
2887 3165 3.742433 AGAGATAACCAAGATCGCCTG 57.258 47.619 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.947228 GACACAACAATTGATCTCTTGGA 57.053 39.130 13.59 0.00 0.00 3.53
23 24 6.506500 GACACAACAATTGATCTCTTGGAT 57.493 37.500 13.59 0.00 37.37 3.41
34 35 4.698575 GATCTCTTGGATCTTTTAGCCGT 58.301 43.478 0.00 0.00 45.38 5.68
35 36 3.861840 TCTCTTGGATCTTTTAGCCGTG 58.138 45.455 0.00 0.00 35.94 4.94
36 37 3.260884 TCTCTTGGATCTTTTAGCCGTGT 59.739 43.478 0.00 0.00 35.94 4.49
37 38 3.334691 TCTTGGATCTTTTAGCCGTGTG 58.665 45.455 0.00 0.00 35.94 3.82
38 39 2.851263 TGGATCTTTTAGCCGTGTGT 57.149 45.000 0.00 0.00 35.94 3.72
39 40 2.422597 TGGATCTTTTAGCCGTGTGTG 58.577 47.619 0.00 0.00 35.94 3.82
40 41 1.737793 GGATCTTTTAGCCGTGTGTGG 59.262 52.381 0.00 0.00 0.00 4.17
41 42 2.423577 GATCTTTTAGCCGTGTGTGGT 58.576 47.619 0.00 0.00 0.00 4.16
42 43 1.588674 TCTTTTAGCCGTGTGTGGTG 58.411 50.000 0.00 0.00 0.00 4.17
43 44 0.040425 CTTTTAGCCGTGTGTGGTGC 60.040 55.000 0.00 0.00 0.00 5.01
44 45 1.448922 TTTTAGCCGTGTGTGGTGCC 61.449 55.000 0.00 0.00 0.00 5.01
45 46 3.835790 TTAGCCGTGTGTGGTGCCC 62.836 63.158 0.00 0.00 0.00 5.36
49 50 3.941188 CGTGTGTGGTGCCCCTCT 61.941 66.667 0.00 0.00 0.00 3.69
50 51 2.515901 GTGTGTGGTGCCCCTCTT 59.484 61.111 0.00 0.00 0.00 2.85
51 52 1.600916 GTGTGTGGTGCCCCTCTTC 60.601 63.158 0.00 0.00 0.00 2.87
52 53 2.075566 TGTGTGGTGCCCCTCTTCA 61.076 57.895 0.00 0.00 0.00 3.02
53 54 1.380302 GTGTGGTGCCCCTCTTCAT 59.620 57.895 0.00 0.00 0.00 2.57
54 55 0.678048 GTGTGGTGCCCCTCTTCATC 60.678 60.000 0.00 0.00 0.00 2.92
55 56 1.133181 TGTGGTGCCCCTCTTCATCA 61.133 55.000 0.00 0.00 0.00 3.07
56 57 0.257039 GTGGTGCCCCTCTTCATCAT 59.743 55.000 0.00 0.00 0.00 2.45
57 58 1.490490 GTGGTGCCCCTCTTCATCATA 59.510 52.381 0.00 0.00 0.00 2.15
58 59 1.770658 TGGTGCCCCTCTTCATCATAG 59.229 52.381 0.00 0.00 0.00 2.23
59 60 1.771255 GGTGCCCCTCTTCATCATAGT 59.229 52.381 0.00 0.00 0.00 2.12
60 61 2.224402 GGTGCCCCTCTTCATCATAGTC 60.224 54.545 0.00 0.00 0.00 2.59
61 62 2.050144 TGCCCCTCTTCATCATAGTCC 58.950 52.381 0.00 0.00 0.00 3.85
62 63 2.050144 GCCCCTCTTCATCATAGTCCA 58.950 52.381 0.00 0.00 0.00 4.02
63 64 2.224402 GCCCCTCTTCATCATAGTCCAC 60.224 54.545 0.00 0.00 0.00 4.02
64 65 2.370189 CCCCTCTTCATCATAGTCCACC 59.630 54.545 0.00 0.00 0.00 4.61
65 66 3.312890 CCCTCTTCATCATAGTCCACCT 58.687 50.000 0.00 0.00 0.00 4.00
66 67 3.323403 CCCTCTTCATCATAGTCCACCTC 59.677 52.174 0.00 0.00 0.00 3.85
67 68 3.005261 CCTCTTCATCATAGTCCACCTCG 59.995 52.174 0.00 0.00 0.00 4.63
68 69 3.885901 CTCTTCATCATAGTCCACCTCGA 59.114 47.826 0.00 0.00 0.00 4.04
69 70 4.474394 TCTTCATCATAGTCCACCTCGAT 58.526 43.478 0.00 0.00 0.00 3.59
70 71 5.631119 TCTTCATCATAGTCCACCTCGATA 58.369 41.667 0.00 0.00 0.00 2.92
71 72 6.068670 TCTTCATCATAGTCCACCTCGATAA 58.931 40.000 0.00 0.00 0.00 1.75
72 73 6.721668 TCTTCATCATAGTCCACCTCGATAAT 59.278 38.462 0.00 0.00 0.00 1.28
73 74 7.888546 TCTTCATCATAGTCCACCTCGATAATA 59.111 37.037 0.00 0.00 0.00 0.98
74 75 8.595362 TTCATCATAGTCCACCTCGATAATAT 57.405 34.615 0.00 0.00 0.00 1.28
75 76 8.595362 TCATCATAGTCCACCTCGATAATATT 57.405 34.615 0.00 0.00 0.00 1.28
76 77 8.470002 TCATCATAGTCCACCTCGATAATATTG 58.530 37.037 0.00 0.00 0.00 1.90
77 78 7.776618 TCATAGTCCACCTCGATAATATTGT 57.223 36.000 0.00 0.00 0.00 2.71
78 79 8.873186 TCATAGTCCACCTCGATAATATTGTA 57.127 34.615 0.00 0.00 0.00 2.41
79 80 8.957466 TCATAGTCCACCTCGATAATATTGTAG 58.043 37.037 0.00 0.00 0.00 2.74
80 81 6.026947 AGTCCACCTCGATAATATTGTAGC 57.973 41.667 0.00 0.00 0.00 3.58
81 82 5.538813 AGTCCACCTCGATAATATTGTAGCA 59.461 40.000 0.00 0.00 0.00 3.49
82 83 5.864474 GTCCACCTCGATAATATTGTAGCAG 59.136 44.000 0.00 0.00 0.00 4.24
83 84 5.538813 TCCACCTCGATAATATTGTAGCAGT 59.461 40.000 0.00 0.00 0.00 4.40
84 85 5.635280 CCACCTCGATAATATTGTAGCAGTG 59.365 44.000 0.00 3.51 0.00 3.66
85 86 5.119279 CACCTCGATAATATTGTAGCAGTGC 59.881 44.000 7.13 7.13 0.00 4.40
86 87 5.011125 ACCTCGATAATATTGTAGCAGTGCT 59.989 40.000 23.44 23.44 43.41 4.40
87 88 5.928839 CCTCGATAATATTGTAGCAGTGCTT 59.071 40.000 25.23 7.71 40.44 3.91
88 89 7.090808 CCTCGATAATATTGTAGCAGTGCTTA 58.909 38.462 25.23 10.00 40.44 3.09
89 90 7.274468 CCTCGATAATATTGTAGCAGTGCTTAG 59.726 40.741 25.23 2.05 40.44 2.18
90 91 7.090808 TCGATAATATTGTAGCAGTGCTTAGG 58.909 38.462 25.23 4.36 40.44 2.69
91 92 6.183360 CGATAATATTGTAGCAGTGCTTAGGC 60.183 42.308 25.23 11.82 40.44 3.93
92 93 1.656652 ATTGTAGCAGTGCTTAGGCG 58.343 50.000 25.23 0.00 40.44 5.52
93 94 0.606096 TTGTAGCAGTGCTTAGGCGA 59.394 50.000 25.23 8.56 40.44 5.54
94 95 0.606096 TGTAGCAGTGCTTAGGCGAA 59.394 50.000 25.23 0.00 40.44 4.70
95 96 1.281899 GTAGCAGTGCTTAGGCGAAG 58.718 55.000 25.23 2.68 40.44 3.79
96 97 0.175760 TAGCAGTGCTTAGGCGAAGG 59.824 55.000 25.23 0.00 40.44 3.46
108 109 2.571757 CGAAGGCCTGCGACAGTA 59.428 61.111 30.61 0.00 0.00 2.74
109 110 1.517257 CGAAGGCCTGCGACAGTAG 60.517 63.158 30.61 0.00 0.00 2.57
110 111 1.890894 GAAGGCCTGCGACAGTAGA 59.109 57.895 5.69 0.00 31.28 2.59
111 112 0.246635 GAAGGCCTGCGACAGTAGAA 59.753 55.000 5.69 0.00 31.28 2.10
112 113 0.037232 AAGGCCTGCGACAGTAGAAC 60.037 55.000 5.69 0.00 31.28 3.01
113 114 1.185618 AGGCCTGCGACAGTAGAACA 61.186 55.000 3.11 0.00 31.28 3.18
114 115 0.108138 GGCCTGCGACAGTAGAACAT 60.108 55.000 0.00 0.00 31.28 2.71
115 116 1.281899 GCCTGCGACAGTAGAACATC 58.718 55.000 6.19 0.00 31.28 3.06
116 117 1.404181 GCCTGCGACAGTAGAACATCA 60.404 52.381 6.19 0.00 31.28 3.07
117 118 2.930887 GCCTGCGACAGTAGAACATCAA 60.931 50.000 6.19 0.00 31.28 2.57
118 119 2.668457 CCTGCGACAGTAGAACATCAAC 59.332 50.000 6.19 0.00 31.28 3.18
119 120 3.317150 CTGCGACAGTAGAACATCAACA 58.683 45.455 0.00 0.00 31.28 3.33
120 121 3.925379 TGCGACAGTAGAACATCAACAT 58.075 40.909 0.00 0.00 0.00 2.71
121 122 3.926527 TGCGACAGTAGAACATCAACATC 59.073 43.478 0.00 0.00 0.00 3.06
122 123 3.000674 GCGACAGTAGAACATCAACATCG 60.001 47.826 0.00 0.00 0.00 3.84
123 124 4.166523 CGACAGTAGAACATCAACATCGT 58.833 43.478 0.00 0.00 0.00 3.73
124 125 4.263209 CGACAGTAGAACATCAACATCGTC 59.737 45.833 0.00 0.00 0.00 4.20
125 126 5.134202 ACAGTAGAACATCAACATCGTCA 57.866 39.130 0.00 0.00 0.00 4.35
126 127 4.923871 ACAGTAGAACATCAACATCGTCAC 59.076 41.667 0.00 0.00 0.00 3.67
127 128 4.327357 CAGTAGAACATCAACATCGTCACC 59.673 45.833 0.00 0.00 0.00 4.02
128 129 3.401033 AGAACATCAACATCGTCACCA 57.599 42.857 0.00 0.00 0.00 4.17
129 130 3.942829 AGAACATCAACATCGTCACCAT 58.057 40.909 0.00 0.00 0.00 3.55
130 131 3.686241 AGAACATCAACATCGTCACCATG 59.314 43.478 0.00 0.00 0.00 3.66
131 132 1.739466 ACATCAACATCGTCACCATGC 59.261 47.619 0.00 0.00 0.00 4.06
132 133 1.064505 CATCAACATCGTCACCATGCC 59.935 52.381 0.00 0.00 0.00 4.40
133 134 1.018752 TCAACATCGTCACCATGCCG 61.019 55.000 0.00 0.00 0.00 5.69
134 135 1.003839 AACATCGTCACCATGCCGT 60.004 52.632 0.00 0.00 0.00 5.68
135 136 1.019278 AACATCGTCACCATGCCGTC 61.019 55.000 0.00 0.00 0.00 4.79
136 137 2.202743 ATCGTCACCATGCCGTCG 60.203 61.111 0.00 0.00 0.00 5.12
137 138 3.001902 ATCGTCACCATGCCGTCGT 62.002 57.895 0.00 0.00 0.00 4.34
138 139 3.478394 CGTCACCATGCCGTCGTG 61.478 66.667 0.00 0.00 0.00 4.35
139 140 3.788766 GTCACCATGCCGTCGTGC 61.789 66.667 0.00 0.00 0.00 5.34
140 141 4.002506 TCACCATGCCGTCGTGCT 62.003 61.111 7.14 0.00 0.00 4.40
141 142 3.792047 CACCATGCCGTCGTGCTG 61.792 66.667 7.14 3.84 0.00 4.41
142 143 4.002506 ACCATGCCGTCGTGCTGA 62.003 61.111 7.14 0.00 0.00 4.26
143 144 3.490759 CCATGCCGTCGTGCTGAC 61.491 66.667 7.14 0.20 44.53 3.51
154 155 2.828933 GTGCTGACGAAACTCTCCC 58.171 57.895 0.00 0.00 0.00 4.30
155 156 0.318762 GTGCTGACGAAACTCTCCCT 59.681 55.000 0.00 0.00 0.00 4.20
156 157 0.603569 TGCTGACGAAACTCTCCCTC 59.396 55.000 0.00 0.00 0.00 4.30
157 158 0.603569 GCTGACGAAACTCTCCCTCA 59.396 55.000 0.00 0.00 0.00 3.86
158 159 1.000955 GCTGACGAAACTCTCCCTCAA 59.999 52.381 0.00 0.00 0.00 3.02
159 160 2.548067 GCTGACGAAACTCTCCCTCAAA 60.548 50.000 0.00 0.00 0.00 2.69
160 161 3.321497 CTGACGAAACTCTCCCTCAAAG 58.679 50.000 0.00 0.00 0.00 2.77
161 162 2.070028 GACGAAACTCTCCCTCAAAGC 58.930 52.381 0.00 0.00 0.00 3.51
162 163 1.694696 ACGAAACTCTCCCTCAAAGCT 59.305 47.619 0.00 0.00 0.00 3.74
163 164 2.289133 ACGAAACTCTCCCTCAAAGCTC 60.289 50.000 0.00 0.00 0.00 4.09
164 165 2.342179 GAAACTCTCCCTCAAAGCTCG 58.658 52.381 0.00 0.00 0.00 5.03
165 166 0.610687 AACTCTCCCTCAAAGCTCGG 59.389 55.000 0.00 0.00 0.00 4.63
166 167 1.153469 CTCTCCCTCAAAGCTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
167 168 1.610673 TCTCCCTCAAAGCTCGGCT 60.611 57.895 0.00 0.00 42.56 5.52
168 169 1.449246 CTCCCTCAAAGCTCGGCTG 60.449 63.158 0.00 0.00 39.62 4.85
169 170 2.437359 CCCTCAAAGCTCGGCTGG 60.437 66.667 0.00 0.00 39.62 4.85
170 171 2.665000 CCTCAAAGCTCGGCTGGA 59.335 61.111 0.00 0.94 39.62 3.86
171 172 1.222936 CCTCAAAGCTCGGCTGGAT 59.777 57.895 0.00 0.00 39.62 3.41
172 173 0.813210 CCTCAAAGCTCGGCTGGATC 60.813 60.000 0.00 0.00 39.62 3.36
173 174 1.150567 CTCAAAGCTCGGCTGGATCG 61.151 60.000 0.00 0.00 39.62 3.69
174 175 2.176273 CAAAGCTCGGCTGGATCGG 61.176 63.158 0.00 0.00 39.62 4.18
175 176 2.359169 AAAGCTCGGCTGGATCGGA 61.359 57.895 0.00 0.00 39.62 4.55
176 177 2.303549 AAAGCTCGGCTGGATCGGAG 62.304 60.000 0.00 0.00 39.62 4.63
177 178 3.532155 GCTCGGCTGGATCGGAGT 61.532 66.667 0.00 0.00 36.27 3.85
178 179 3.082579 GCTCGGCTGGATCGGAGTT 62.083 63.158 0.00 0.00 36.27 3.01
179 180 1.066587 CTCGGCTGGATCGGAGTTC 59.933 63.158 0.00 0.00 0.00 3.01
180 181 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
188 189 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
189 190 2.037136 TCGGAGTTCGAGGGACGTC 61.037 63.158 7.13 7.13 43.74 4.34
190 191 2.330372 CGGAGTTCGAGGGACGTCA 61.330 63.158 18.91 0.00 42.43 4.35
191 192 1.654954 CGGAGTTCGAGGGACGTCAT 61.655 60.000 18.91 4.87 42.43 3.06
192 193 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.000 18.91 13.48 43.13 2.92
193 194 0.248134 GAGTTCGAGGGACGTCATCG 60.248 60.000 27.08 27.08 43.13 3.84
194 195 0.675837 AGTTCGAGGGACGTCATCGA 60.676 55.000 29.82 29.82 43.19 3.59
195 196 0.248134 GTTCGAGGGACGTCATCGAG 60.248 60.000 30.77 16.93 45.23 4.04
196 197 0.675837 TTCGAGGGACGTCATCGAGT 60.676 55.000 30.77 7.51 45.23 4.18
197 198 1.088340 TCGAGGGACGTCATCGAGTC 61.088 60.000 29.82 12.39 40.29 3.36
198 199 1.352404 GAGGGACGTCATCGAGTCG 59.648 63.158 18.91 6.09 40.62 4.18
199 200 1.078637 AGGGACGTCATCGAGTCGA 60.079 57.895 19.06 19.06 41.13 4.20
200 201 0.675837 AGGGACGTCATCGAGTCGAA 60.676 55.000 20.74 0.07 39.99 3.71
201 202 0.522915 GGGACGTCATCGAGTCGAAC 60.523 60.000 20.74 13.15 39.99 3.95
202 203 0.856490 GGACGTCATCGAGTCGAACG 60.856 60.000 28.73 28.73 42.95 3.95
203 204 1.864862 ACGTCATCGAGTCGAACGT 59.135 52.632 29.82 29.82 44.52 3.99
204 205 0.452287 ACGTCATCGAGTCGAACGTG 60.452 55.000 32.79 21.87 46.42 4.49
205 206 0.452287 CGTCATCGAGTCGAACGTGT 60.452 55.000 24.53 5.77 39.99 4.49
206 207 0.975544 GTCATCGAGTCGAACGTGTG 59.024 55.000 20.74 12.87 39.99 3.82
207 208 0.728129 TCATCGAGTCGAACGTGTGC 60.728 55.000 20.74 0.00 39.99 4.57
208 209 1.001745 CATCGAGTCGAACGTGTGCA 61.002 55.000 20.74 0.00 39.99 4.57
209 210 0.729478 ATCGAGTCGAACGTGTGCAG 60.729 55.000 20.74 0.00 39.99 4.41
210 211 1.370051 CGAGTCGAACGTGTGCAGA 60.370 57.895 6.73 0.00 0.00 4.26
211 212 0.933047 CGAGTCGAACGTGTGCAGAA 60.933 55.000 6.73 0.00 0.00 3.02
212 213 0.503117 GAGTCGAACGTGTGCAGAAC 59.497 55.000 0.00 0.00 0.00 3.01
213 214 0.102481 AGTCGAACGTGTGCAGAACT 59.898 50.000 0.00 0.00 0.00 3.01
214 215 0.503117 GTCGAACGTGTGCAGAACTC 59.497 55.000 0.00 0.00 0.00 3.01
218 219 3.848142 CGTGTGCAGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
219 220 1.734477 CGTGTGCAGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
220 221 1.666011 GTGTGCAGAACTCGGAGGA 59.334 57.895 10.23 0.00 0.00 3.71
221 222 0.389166 GTGTGCAGAACTCGGAGGAG 60.389 60.000 10.23 0.00 46.13 3.69
229 230 3.432588 CTCGGAGGAGTCGTGCGT 61.433 66.667 23.04 0.00 34.93 5.24
230 231 2.979197 CTCGGAGGAGTCGTGCGTT 61.979 63.158 23.04 0.00 34.93 4.84
231 232 2.504244 CGGAGGAGTCGTGCGTTC 60.504 66.667 17.24 0.00 0.00 3.95
232 233 2.504244 GGAGGAGTCGTGCGTTCG 60.504 66.667 0.00 0.00 0.00 3.95
233 234 2.504244 GAGGAGTCGTGCGTTCGG 60.504 66.667 0.00 0.00 0.00 4.30
234 235 3.264866 GAGGAGTCGTGCGTTCGGT 62.265 63.158 0.00 0.00 0.00 4.69
235 236 1.915614 GAGGAGTCGTGCGTTCGGTA 61.916 60.000 0.00 0.00 0.00 4.02
236 237 1.799121 GGAGTCGTGCGTTCGGTAC 60.799 63.158 2.16 0.00 0.00 3.34
237 238 1.208614 GAGTCGTGCGTTCGGTACT 59.791 57.895 0.00 0.00 0.00 2.73
238 239 0.386478 GAGTCGTGCGTTCGGTACTT 60.386 55.000 0.00 0.00 0.00 2.24
239 240 0.662374 AGTCGTGCGTTCGGTACTTG 60.662 55.000 0.00 0.00 0.00 3.16
240 241 0.661187 GTCGTGCGTTCGGTACTTGA 60.661 55.000 0.00 0.00 0.00 3.02
241 242 0.241749 TCGTGCGTTCGGTACTTGAT 59.758 50.000 0.00 0.00 0.00 2.57
242 243 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
243 244 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
244 245 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
245 246 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
246 247 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
247 248 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
248 249 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
249 250 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
250 251 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
257 258 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
258 259 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
259 260 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
261 262 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
262 263 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
263 264 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
264 265 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
270 271 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
271 272 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
272 273 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
273 274 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
274 275 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
275 276 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
276 277 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
277 278 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
278 279 1.806542 ACGTACGACTACATCAACCGT 59.193 47.619 24.41 0.00 37.27 4.83
279 280 2.171567 CGTACGACTACATCAACCGTG 58.828 52.381 10.44 0.00 35.05 4.94
280 281 2.413239 CGTACGACTACATCAACCGTGT 60.413 50.000 10.44 0.00 35.05 4.49
281 282 2.806608 ACGACTACATCAACCGTGTT 57.193 45.000 0.00 0.00 31.85 3.32
282 283 2.400399 ACGACTACATCAACCGTGTTG 58.600 47.619 9.65 9.65 31.85 3.33
283 284 2.223876 ACGACTACATCAACCGTGTTGT 60.224 45.455 13.95 5.99 40.15 3.32
284 285 2.154963 CGACTACATCAACCGTGTTGTG 59.845 50.000 13.95 13.28 38.02 3.33
285 286 1.871039 ACTACATCAACCGTGTTGTGC 59.129 47.619 13.95 0.00 38.02 4.57
286 287 2.143122 CTACATCAACCGTGTTGTGCT 58.857 47.619 13.95 3.74 38.02 4.40
287 288 1.388547 ACATCAACCGTGTTGTGCTT 58.611 45.000 13.95 0.26 36.52 3.91
288 289 1.333619 ACATCAACCGTGTTGTGCTTC 59.666 47.619 13.95 0.00 36.52 3.86
289 290 0.951558 ATCAACCGTGTTGTGCTTCC 59.048 50.000 13.95 0.00 0.00 3.46
290 291 1.010125 CAACCGTGTTGTGCTTCCG 60.010 57.895 8.17 0.00 0.00 4.30
291 292 2.830285 AACCGTGTTGTGCTTCCGC 61.830 57.895 0.00 0.00 0.00 5.54
292 293 2.972505 CCGTGTTGTGCTTCCGCT 60.973 61.111 0.00 0.00 36.97 5.52
293 294 2.542907 CCGTGTTGTGCTTCCGCTT 61.543 57.895 0.00 0.00 36.97 4.68
294 295 1.082756 CGTGTTGTGCTTCCGCTTC 60.083 57.895 0.00 0.00 36.97 3.86
295 296 1.282875 GTGTTGTGCTTCCGCTTCC 59.717 57.895 0.00 0.00 36.97 3.46
296 297 2.250939 TGTTGTGCTTCCGCTTCCG 61.251 57.895 0.00 0.00 36.97 4.30
297 298 3.353836 TTGTGCTTCCGCTTCCGC 61.354 61.111 0.00 0.00 36.97 5.54
298 299 3.825160 TTGTGCTTCCGCTTCCGCT 62.825 57.895 0.00 0.00 36.97 5.52
299 300 3.050275 GTGCTTCCGCTTCCGCTT 61.050 61.111 0.00 0.00 36.97 4.68
300 301 2.281484 TGCTTCCGCTTCCGCTTT 60.281 55.556 0.00 0.00 36.97 3.51
301 302 2.325082 TGCTTCCGCTTCCGCTTTC 61.325 57.895 0.00 0.00 36.97 2.62
302 303 2.778679 CTTCCGCTTCCGCTTTCG 59.221 61.111 0.00 0.00 0.00 3.46
312 313 2.202703 CGCTTTCGGTCTACGGGG 60.203 66.667 0.00 0.00 44.45 5.73
313 314 2.186125 GCTTTCGGTCTACGGGGG 59.814 66.667 0.00 0.00 44.45 5.40
314 315 2.653087 GCTTTCGGTCTACGGGGGT 61.653 63.158 0.00 0.00 44.45 4.95
315 316 1.322538 GCTTTCGGTCTACGGGGGTA 61.323 60.000 0.00 0.00 44.45 3.69
316 317 0.457443 CTTTCGGTCTACGGGGGTAC 59.543 60.000 0.00 0.00 44.45 3.34
317 318 1.312371 TTTCGGTCTACGGGGGTACG 61.312 60.000 0.00 0.00 44.45 3.67
322 323 1.378514 TCTACGGGGGTACGTGGAC 60.379 63.158 0.00 0.00 46.88 4.02
323 324 1.678635 CTACGGGGGTACGTGGACA 60.679 63.158 0.00 0.00 46.45 4.02
324 325 1.937546 CTACGGGGGTACGTGGACAC 61.938 65.000 0.00 0.00 46.45 3.67
325 326 3.304721 CGGGGGTACGTGGACACA 61.305 66.667 0.00 0.00 0.00 3.72
326 327 2.344872 GGGGGTACGTGGACACAC 59.655 66.667 0.00 0.00 44.23 3.82
327 328 2.212110 GGGGGTACGTGGACACACT 61.212 63.158 0.00 0.00 45.50 3.55
328 329 1.291272 GGGGTACGTGGACACACTC 59.709 63.158 0.00 0.00 45.50 3.51
329 330 1.080974 GGGTACGTGGACACACTCG 60.081 63.158 0.00 0.00 45.50 4.18
330 331 1.656441 GGTACGTGGACACACTCGT 59.344 57.895 0.00 0.00 45.50 4.18
331 332 0.386478 GGTACGTGGACACACTCGTC 60.386 60.000 0.00 0.00 45.50 4.20
338 339 1.502640 GACACACTCGTCCCTCTCG 59.497 63.158 0.00 0.00 0.00 4.04
339 340 1.228184 ACACACTCGTCCCTCTCGT 60.228 57.895 0.00 0.00 0.00 4.18
340 341 0.822532 ACACACTCGTCCCTCTCGTT 60.823 55.000 0.00 0.00 0.00 3.85
341 342 0.387367 CACACTCGTCCCTCTCGTTG 60.387 60.000 0.00 0.00 0.00 4.10
342 343 0.822532 ACACTCGTCCCTCTCGTTGT 60.823 55.000 0.00 0.00 0.00 3.32
343 344 0.314302 CACTCGTCCCTCTCGTTGTT 59.686 55.000 0.00 0.00 0.00 2.83
344 345 1.538512 CACTCGTCCCTCTCGTTGTTA 59.461 52.381 0.00 0.00 0.00 2.41
345 346 2.163815 CACTCGTCCCTCTCGTTGTTAT 59.836 50.000 0.00 0.00 0.00 1.89
346 347 2.163815 ACTCGTCCCTCTCGTTGTTATG 59.836 50.000 0.00 0.00 0.00 1.90
347 348 1.135199 TCGTCCCTCTCGTTGTTATGC 60.135 52.381 0.00 0.00 0.00 3.14
348 349 1.403647 CGTCCCTCTCGTTGTTATGCA 60.404 52.381 0.00 0.00 0.00 3.96
349 350 2.738643 CGTCCCTCTCGTTGTTATGCAT 60.739 50.000 3.79 3.79 0.00 3.96
350 351 2.866762 GTCCCTCTCGTTGTTATGCATC 59.133 50.000 0.19 0.00 0.00 3.91
351 352 2.499693 TCCCTCTCGTTGTTATGCATCA 59.500 45.455 0.19 0.00 0.00 3.07
352 353 2.609459 CCCTCTCGTTGTTATGCATCAC 59.391 50.000 0.19 2.46 0.00 3.06
353 354 2.609459 CCTCTCGTTGTTATGCATCACC 59.391 50.000 0.19 0.00 0.00 4.02
354 355 3.261580 CTCTCGTTGTTATGCATCACCA 58.738 45.455 0.19 0.00 0.00 4.17
355 356 3.872696 TCTCGTTGTTATGCATCACCAT 58.127 40.909 0.19 0.00 0.00 3.55
356 357 3.622612 TCTCGTTGTTATGCATCACCATG 59.377 43.478 0.19 0.00 0.00 3.66
357 358 3.604582 TCGTTGTTATGCATCACCATGA 58.395 40.909 0.19 2.36 30.57 3.07
358 359 4.198530 TCGTTGTTATGCATCACCATGAT 58.801 39.130 0.19 0.00 37.65 2.45
359 360 4.273235 TCGTTGTTATGCATCACCATGATC 59.727 41.667 0.19 0.00 34.28 2.92
360 361 4.274214 CGTTGTTATGCATCACCATGATCT 59.726 41.667 0.19 0.00 34.28 2.75
361 362 5.220912 CGTTGTTATGCATCACCATGATCTT 60.221 40.000 0.19 0.00 34.28 2.40
362 363 5.761165 TGTTATGCATCACCATGATCTTG 57.239 39.130 0.19 1.60 34.28 3.02
363 364 4.037089 TGTTATGCATCACCATGATCTTGC 59.963 41.667 0.19 0.00 34.28 4.01
364 365 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
365 366 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
366 367 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
367 368 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
368 369 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
369 370 1.001860 TCACCATGATCTTGCGTGTGA 59.998 47.619 19.89 16.36 0.00 3.58
370 371 1.395954 CACCATGATCTTGCGTGTGAG 59.604 52.381 15.81 1.66 0.00 3.51
371 372 1.002430 ACCATGATCTTGCGTGTGAGT 59.998 47.619 3.07 0.00 0.00 3.41
372 373 2.233676 ACCATGATCTTGCGTGTGAGTA 59.766 45.455 3.07 0.00 0.00 2.59
373 374 3.261580 CCATGATCTTGCGTGTGAGTAA 58.738 45.455 3.07 0.00 0.00 2.24
374 375 3.684305 CCATGATCTTGCGTGTGAGTAAA 59.316 43.478 3.07 0.00 0.00 2.01
375 376 4.154015 CCATGATCTTGCGTGTGAGTAAAA 59.846 41.667 3.07 0.00 0.00 1.52
376 377 5.163723 CCATGATCTTGCGTGTGAGTAAAAT 60.164 40.000 3.07 0.00 0.00 1.82
377 378 6.037062 CCATGATCTTGCGTGTGAGTAAAATA 59.963 38.462 3.07 0.00 0.00 1.40
378 379 7.254898 CCATGATCTTGCGTGTGAGTAAAATAT 60.255 37.037 3.07 0.00 0.00 1.28
379 380 7.609760 TGATCTTGCGTGTGAGTAAAATATT 57.390 32.000 0.00 0.00 0.00 1.28
380 381 8.039603 TGATCTTGCGTGTGAGTAAAATATTT 57.960 30.769 0.00 0.00 0.00 1.40
381 382 8.511321 TGATCTTGCGTGTGAGTAAAATATTTT 58.489 29.630 17.18 17.18 0.00 1.82
382 383 9.341899 GATCTTGCGTGTGAGTAAAATATTTTT 57.658 29.630 18.14 1.80 0.00 1.94
406 407 7.841282 TTTGAAATTACTACATTCCCCAACA 57.159 32.000 0.00 0.00 0.00 3.33
426 427 6.256975 CCAACAGCAAAATGGATGTATCAATG 59.743 38.462 0.00 0.00 36.18 2.82
524 525 3.748568 GCGAGGAAATATGGGAATCTGAC 59.251 47.826 0.00 0.00 0.00 3.51
540 541 0.599991 TGACGATGCTTGCTGACGTT 60.600 50.000 0.00 0.00 37.32 3.99
541 542 0.512952 GACGATGCTTGCTGACGTTT 59.487 50.000 0.00 0.00 37.32 3.60
547 548 0.110644 GCTTGCTGACGTTTCTTCCG 60.111 55.000 0.00 0.00 0.00 4.30
552 553 2.875933 TGCTGACGTTTCTTCCGAAATT 59.124 40.909 0.00 0.00 40.91 1.82
605 810 5.708877 ATCCACTCCGCTAGAAATACTAC 57.291 43.478 0.00 0.00 0.00 2.73
733 969 9.383519 GAAACTCCTACAGAAACATTGATGATA 57.616 33.333 0.00 0.00 0.00 2.15
892 1135 2.733552 CTGATCCATCCGATAAACTGCG 59.266 50.000 0.00 0.00 0.00 5.18
893 1136 2.364002 TGATCCATCCGATAAACTGCGA 59.636 45.455 0.00 0.00 0.00 5.10
923 1167 2.058125 TTGCCTTTGCCTACCCGACA 62.058 55.000 0.00 0.00 36.33 4.35
935 1179 0.186386 ACCCGACACAAATTTCCCCA 59.814 50.000 0.00 0.00 0.00 4.96
1780 2045 4.385405 GTCCTGCTCTGGTGCGCT 62.385 66.667 9.73 0.00 35.36 5.92
1865 2130 4.592192 CCTCATGATCCCGCGCGT 62.592 66.667 29.95 10.71 0.00 6.01
1933 2198 2.202919 CACCTCGCGCCATCATGA 60.203 61.111 0.00 0.00 0.00 3.07
1997 2262 2.352805 CTTGCTGTCTCCCACCCC 59.647 66.667 0.00 0.00 0.00 4.95
2130 2395 1.873270 CTGGATCGGACACGGACACA 61.873 60.000 0.00 0.00 41.39 3.72
2180 2451 0.664166 TTGGTCCGTTCGAACTACGC 60.664 55.000 24.80 15.70 42.26 4.42
2207 2478 1.940613 TGATGATGACGACGACGATCT 59.059 47.619 15.32 0.00 42.66 2.75
2208 2479 2.032808 TGATGATGACGACGACGATCTC 60.033 50.000 15.32 7.43 42.66 2.75
2209 2480 1.653151 TGATGACGACGACGATCTCT 58.347 50.000 15.32 0.00 42.66 3.10
2210 2481 1.593469 TGATGACGACGACGATCTCTC 59.407 52.381 15.32 0.90 42.66 3.20
2211 2482 1.862201 GATGACGACGACGATCTCTCT 59.138 52.381 15.32 0.00 42.66 3.10
2212 2483 1.723220 TGACGACGACGATCTCTCTT 58.277 50.000 15.32 0.00 42.66 2.85
2226 2497 5.299028 CGATCTCTCTTTCTCTTCAGATGGA 59.701 44.000 0.00 0.00 0.00 3.41
2726 3003 2.442643 GGGGGACGACGGGTATGA 60.443 66.667 0.00 0.00 0.00 2.15
2805 3083 2.093306 TGAACGATCATTCCGCTGTT 57.907 45.000 0.00 0.00 0.00 3.16
2839 3117 2.436646 CGTAGCCCTTGTGCCTGG 60.437 66.667 0.00 0.00 0.00 4.45
2887 3165 2.678336 CACCGAAGCCTGATTAAGTTCC 59.322 50.000 0.00 0.00 0.00 3.62
2927 3205 5.717178 TCTCTACTCCTAATGAAGCAGTTGT 59.283 40.000 0.00 0.00 0.00 3.32
2934 3212 6.769512 TCCTAATGAAGCAGTTGTTAGTCTT 58.230 36.000 0.00 0.00 0.00 3.01
3031 3309 7.034685 TCGATGATAGTTTCTTATTCACCGA 57.965 36.000 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.947228 TCCAAGAGATCAATTGTTGTGTC 57.053 39.130 5.13 1.87 0.00 3.67
13 14 4.080863 ACACGGCTAAAAGATCCAAGAGAT 60.081 41.667 0.00 0.00 38.17 2.75
14 15 3.260884 ACACGGCTAAAAGATCCAAGAGA 59.739 43.478 0.00 0.00 0.00 3.10
15 16 3.372206 CACACGGCTAAAAGATCCAAGAG 59.628 47.826 0.00 0.00 0.00 2.85
16 17 3.244422 ACACACGGCTAAAAGATCCAAGA 60.244 43.478 0.00 0.00 0.00 3.02
17 18 3.074412 ACACACGGCTAAAAGATCCAAG 58.926 45.455 0.00 0.00 0.00 3.61
18 19 2.811431 CACACACGGCTAAAAGATCCAA 59.189 45.455 0.00 0.00 0.00 3.53
19 20 2.422597 CACACACGGCTAAAAGATCCA 58.577 47.619 0.00 0.00 0.00 3.41
20 21 1.737793 CCACACACGGCTAAAAGATCC 59.262 52.381 0.00 0.00 0.00 3.36
21 22 2.159627 CACCACACACGGCTAAAAGATC 59.840 50.000 0.00 0.00 0.00 2.75
22 23 2.151202 CACCACACACGGCTAAAAGAT 58.849 47.619 0.00 0.00 0.00 2.40
23 24 1.588674 CACCACACACGGCTAAAAGA 58.411 50.000 0.00 0.00 0.00 2.52
24 25 0.040425 GCACCACACACGGCTAAAAG 60.040 55.000 0.00 0.00 0.00 2.27
25 26 1.448922 GGCACCACACACGGCTAAAA 61.449 55.000 0.00 0.00 0.00 1.52
26 27 1.894756 GGCACCACACACGGCTAAA 60.895 57.895 0.00 0.00 0.00 1.85
27 28 2.281208 GGCACCACACACGGCTAA 60.281 61.111 0.00 0.00 0.00 3.09
40 41 2.224402 GGACTATGATGAAGAGGGGCAC 60.224 54.545 0.00 0.00 0.00 5.01
41 42 2.050144 GGACTATGATGAAGAGGGGCA 58.950 52.381 0.00 0.00 0.00 5.36
42 43 2.050144 TGGACTATGATGAAGAGGGGC 58.950 52.381 0.00 0.00 0.00 5.80
43 44 2.370189 GGTGGACTATGATGAAGAGGGG 59.630 54.545 0.00 0.00 0.00 4.79
44 45 3.312890 AGGTGGACTATGATGAAGAGGG 58.687 50.000 0.00 0.00 0.00 4.30
45 46 3.005261 CGAGGTGGACTATGATGAAGAGG 59.995 52.174 0.00 0.00 0.00 3.69
46 47 3.885901 TCGAGGTGGACTATGATGAAGAG 59.114 47.826 0.00 0.00 0.00 2.85
47 48 3.898482 TCGAGGTGGACTATGATGAAGA 58.102 45.455 0.00 0.00 0.00 2.87
48 49 4.862902 ATCGAGGTGGACTATGATGAAG 57.137 45.455 0.00 0.00 0.00 3.02
49 50 6.918067 ATTATCGAGGTGGACTATGATGAA 57.082 37.500 0.00 0.00 0.00 2.57
50 51 8.470002 CAATATTATCGAGGTGGACTATGATGA 58.530 37.037 0.00 0.00 0.00 2.92
51 52 8.253810 ACAATATTATCGAGGTGGACTATGATG 58.746 37.037 0.00 0.00 0.00 3.07
52 53 8.367660 ACAATATTATCGAGGTGGACTATGAT 57.632 34.615 0.00 0.00 0.00 2.45
53 54 7.776618 ACAATATTATCGAGGTGGACTATGA 57.223 36.000 0.00 0.00 0.00 2.15
54 55 7.702772 GCTACAATATTATCGAGGTGGACTATG 59.297 40.741 0.00 0.00 0.00 2.23
55 56 7.396339 TGCTACAATATTATCGAGGTGGACTAT 59.604 37.037 0.00 0.00 0.00 2.12
56 57 6.717997 TGCTACAATATTATCGAGGTGGACTA 59.282 38.462 0.00 0.00 0.00 2.59
57 58 5.538813 TGCTACAATATTATCGAGGTGGACT 59.461 40.000 0.00 0.00 0.00 3.85
58 59 5.779922 TGCTACAATATTATCGAGGTGGAC 58.220 41.667 0.00 0.00 0.00 4.02
59 60 5.538813 ACTGCTACAATATTATCGAGGTGGA 59.461 40.000 0.00 0.00 0.00 4.02
60 61 5.635280 CACTGCTACAATATTATCGAGGTGG 59.365 44.000 0.00 0.00 0.00 4.61
61 62 5.119279 GCACTGCTACAATATTATCGAGGTG 59.881 44.000 0.00 0.00 0.00 4.00
62 63 5.011125 AGCACTGCTACAATATTATCGAGGT 59.989 40.000 0.21 0.00 36.99 3.85
63 64 5.473931 AGCACTGCTACAATATTATCGAGG 58.526 41.667 0.21 0.00 36.99 4.63
64 65 7.274468 CCTAAGCACTGCTACAATATTATCGAG 59.726 40.741 3.33 0.00 38.25 4.04
65 66 7.090808 CCTAAGCACTGCTACAATATTATCGA 58.909 38.462 3.33 0.00 38.25 3.59
66 67 6.183360 GCCTAAGCACTGCTACAATATTATCG 60.183 42.308 3.33 0.00 38.25 2.92
67 68 6.183360 CGCCTAAGCACTGCTACAATATTATC 60.183 42.308 3.33 0.00 38.25 1.75
68 69 5.639506 CGCCTAAGCACTGCTACAATATTAT 59.360 40.000 3.33 0.00 38.25 1.28
69 70 4.988540 CGCCTAAGCACTGCTACAATATTA 59.011 41.667 3.33 0.00 38.25 0.98
70 71 3.809832 CGCCTAAGCACTGCTACAATATT 59.190 43.478 3.33 0.00 38.25 1.28
71 72 3.069586 TCGCCTAAGCACTGCTACAATAT 59.930 43.478 3.33 0.00 38.25 1.28
72 73 2.429250 TCGCCTAAGCACTGCTACAATA 59.571 45.455 3.33 0.00 38.25 1.90
73 74 1.207089 TCGCCTAAGCACTGCTACAAT 59.793 47.619 3.33 0.00 38.25 2.71
74 75 0.606096 TCGCCTAAGCACTGCTACAA 59.394 50.000 3.33 0.00 38.25 2.41
75 76 0.606096 TTCGCCTAAGCACTGCTACA 59.394 50.000 3.33 0.00 38.25 2.74
76 77 1.281899 CTTCGCCTAAGCACTGCTAC 58.718 55.000 3.33 0.00 38.25 3.58
77 78 0.175760 CCTTCGCCTAAGCACTGCTA 59.824 55.000 3.33 0.00 38.25 3.49
78 79 1.078848 CCTTCGCCTAAGCACTGCT 60.079 57.895 0.00 0.00 42.56 4.24
79 80 2.754995 GCCTTCGCCTAAGCACTGC 61.755 63.158 0.00 0.00 39.83 4.40
80 81 3.490890 GCCTTCGCCTAAGCACTG 58.509 61.111 0.00 0.00 39.83 3.66
90 91 3.642778 TACTGTCGCAGGCCTTCGC 62.643 63.158 20.69 15.18 35.51 4.70
91 92 1.517257 CTACTGTCGCAGGCCTTCG 60.517 63.158 19.44 19.44 35.51 3.79
92 93 0.246635 TTCTACTGTCGCAGGCCTTC 59.753 55.000 0.00 0.00 35.51 3.46
93 94 0.037232 GTTCTACTGTCGCAGGCCTT 60.037 55.000 0.00 0.00 35.51 4.35
94 95 1.185618 TGTTCTACTGTCGCAGGCCT 61.186 55.000 0.00 0.00 35.51 5.19
95 96 0.108138 ATGTTCTACTGTCGCAGGCC 60.108 55.000 0.00 0.00 35.51 5.19
96 97 1.281899 GATGTTCTACTGTCGCAGGC 58.718 55.000 10.80 0.00 35.51 4.85
97 98 2.654749 TGATGTTCTACTGTCGCAGG 57.345 50.000 10.80 0.00 35.51 4.85
98 99 3.317150 TGTTGATGTTCTACTGTCGCAG 58.683 45.455 5.47 5.47 37.52 5.18
99 100 3.378911 TGTTGATGTTCTACTGTCGCA 57.621 42.857 0.00 0.00 0.00 5.10
100 101 3.000674 CGATGTTGATGTTCTACTGTCGC 60.001 47.826 0.00 0.00 30.63 5.19
101 102 4.166523 ACGATGTTGATGTTCTACTGTCG 58.833 43.478 0.00 11.97 37.18 4.35
102 103 5.061064 GTGACGATGTTGATGTTCTACTGTC 59.939 44.000 0.00 0.00 0.00 3.51
103 104 4.923871 GTGACGATGTTGATGTTCTACTGT 59.076 41.667 0.00 0.00 0.00 3.55
104 105 4.327357 GGTGACGATGTTGATGTTCTACTG 59.673 45.833 0.00 0.00 0.00 2.74
105 106 4.021456 TGGTGACGATGTTGATGTTCTACT 60.021 41.667 0.00 0.00 0.00 2.57
106 107 4.242475 TGGTGACGATGTTGATGTTCTAC 58.758 43.478 0.00 0.00 0.00 2.59
107 108 4.529109 TGGTGACGATGTTGATGTTCTA 57.471 40.909 0.00 0.00 0.00 2.10
108 109 3.401033 TGGTGACGATGTTGATGTTCT 57.599 42.857 0.00 0.00 0.00 3.01
109 110 3.728864 GCATGGTGACGATGTTGATGTTC 60.729 47.826 9.29 0.00 0.00 3.18
110 111 2.162208 GCATGGTGACGATGTTGATGTT 59.838 45.455 9.29 0.00 0.00 2.71
111 112 1.739466 GCATGGTGACGATGTTGATGT 59.261 47.619 9.29 0.00 0.00 3.06
112 113 1.064505 GGCATGGTGACGATGTTGATG 59.935 52.381 9.29 0.00 0.00 3.07
113 114 1.382522 GGCATGGTGACGATGTTGAT 58.617 50.000 9.29 0.00 0.00 2.57
114 115 2.853159 GGCATGGTGACGATGTTGA 58.147 52.632 9.29 0.00 0.00 3.18
122 123 3.788766 GCACGACGGCATGGTGAC 61.789 66.667 0.00 0.00 39.28 3.67
123 124 4.002506 AGCACGACGGCATGGTGA 62.003 61.111 0.00 0.00 39.28 4.02
124 125 3.792047 CAGCACGACGGCATGGTG 61.792 66.667 0.63 0.63 39.89 4.17
125 126 4.002506 TCAGCACGACGGCATGGT 62.003 61.111 10.28 0.00 35.83 3.55
126 127 3.490759 GTCAGCACGACGGCATGG 61.491 66.667 10.28 1.29 34.19 3.66
136 137 0.318762 AGGGAGAGTTTCGTCAGCAC 59.681 55.000 0.00 0.00 0.00 4.40
137 138 0.603569 GAGGGAGAGTTTCGTCAGCA 59.396 55.000 0.00 0.00 0.00 4.41
138 139 0.603569 TGAGGGAGAGTTTCGTCAGC 59.396 55.000 0.00 0.00 0.00 4.26
139 140 3.321497 CTTTGAGGGAGAGTTTCGTCAG 58.679 50.000 0.00 0.00 0.00 3.51
140 141 2.548067 GCTTTGAGGGAGAGTTTCGTCA 60.548 50.000 0.00 0.00 0.00 4.35
141 142 2.070028 GCTTTGAGGGAGAGTTTCGTC 58.930 52.381 0.00 0.00 0.00 4.20
142 143 1.694696 AGCTTTGAGGGAGAGTTTCGT 59.305 47.619 0.00 0.00 0.00 3.85
143 144 2.342179 GAGCTTTGAGGGAGAGTTTCG 58.658 52.381 0.00 0.00 0.00 3.46
144 145 2.342179 CGAGCTTTGAGGGAGAGTTTC 58.658 52.381 0.00 0.00 0.00 2.78
145 146 1.002544 CCGAGCTTTGAGGGAGAGTTT 59.997 52.381 0.00 0.00 0.00 2.66
146 147 0.610687 CCGAGCTTTGAGGGAGAGTT 59.389 55.000 0.00 0.00 0.00 3.01
147 148 1.893919 GCCGAGCTTTGAGGGAGAGT 61.894 60.000 0.00 0.00 0.00 3.24
148 149 1.153469 GCCGAGCTTTGAGGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
149 150 1.610673 AGCCGAGCTTTGAGGGAGA 60.611 57.895 0.00 0.00 33.89 3.71
150 151 1.449246 CAGCCGAGCTTTGAGGGAG 60.449 63.158 0.00 0.00 36.40 4.30
151 152 2.665000 CAGCCGAGCTTTGAGGGA 59.335 61.111 0.00 0.00 36.40 4.20
152 153 2.262774 ATCCAGCCGAGCTTTGAGGG 62.263 60.000 0.00 0.00 36.40 4.30
153 154 0.813210 GATCCAGCCGAGCTTTGAGG 60.813 60.000 0.00 0.00 36.40 3.86
154 155 1.150567 CGATCCAGCCGAGCTTTGAG 61.151 60.000 0.00 0.00 36.40 3.02
155 156 1.153568 CGATCCAGCCGAGCTTTGA 60.154 57.895 0.00 0.00 36.40 2.69
156 157 2.176273 CCGATCCAGCCGAGCTTTG 61.176 63.158 0.00 0.00 36.40 2.77
157 158 2.187946 CCGATCCAGCCGAGCTTT 59.812 61.111 0.00 0.00 36.40 3.51
158 159 2.759973 TCCGATCCAGCCGAGCTT 60.760 61.111 0.00 0.00 36.40 3.74
159 160 3.222855 CTCCGATCCAGCCGAGCT 61.223 66.667 0.00 0.00 40.77 4.09
160 161 2.962697 GAACTCCGATCCAGCCGAGC 62.963 65.000 0.00 0.00 0.00 5.03
161 162 1.066587 GAACTCCGATCCAGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
162 163 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
163 164 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
164 165 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
171 172 2.033141 ACGTCCCTCGAACTCCGA 59.967 61.111 1.88 0.00 46.35 4.55
172 173 1.654954 ATGACGTCCCTCGAACTCCG 61.655 60.000 14.12 0.00 42.86 4.63
173 174 0.100861 GATGACGTCCCTCGAACTCC 59.899 60.000 14.12 0.00 42.86 3.85
174 175 0.248134 CGATGACGTCCCTCGAACTC 60.248 60.000 24.99 5.48 42.86 3.01
175 176 0.675837 TCGATGACGTCCCTCGAACT 60.676 55.000 27.70 0.60 42.86 3.01
176 177 0.248134 CTCGATGACGTCCCTCGAAC 60.248 60.000 28.71 6.04 40.52 3.95
177 178 0.675837 ACTCGATGACGTCCCTCGAA 60.676 55.000 28.71 18.23 40.52 3.71
178 179 1.078637 ACTCGATGACGTCCCTCGA 60.079 57.895 27.81 27.81 42.86 4.04
179 180 1.352404 GACTCGATGACGTCCCTCG 59.648 63.158 23.88 23.88 46.00 4.63
180 181 1.088340 TCGACTCGATGACGTCCCTC 61.088 60.000 14.12 9.05 40.69 4.30
181 182 0.675837 TTCGACTCGATGACGTCCCT 60.676 55.000 14.12 0.00 40.69 4.20
182 183 0.522915 GTTCGACTCGATGACGTCCC 60.523 60.000 14.12 3.95 40.69 4.46
183 184 0.856490 CGTTCGACTCGATGACGTCC 60.856 60.000 14.12 0.00 36.03 4.79
184 185 0.179230 ACGTTCGACTCGATGACGTC 60.179 55.000 20.32 9.11 45.62 4.34
185 186 1.864862 ACGTTCGACTCGATGACGT 59.135 52.632 20.32 20.32 44.52 4.34
186 187 0.452287 ACACGTTCGACTCGATGACG 60.452 55.000 19.25 19.25 42.95 4.35
187 188 0.975544 CACACGTTCGACTCGATGAC 59.024 55.000 14.61 0.00 35.23 3.06
188 189 0.728129 GCACACGTTCGACTCGATGA 60.728 55.000 14.61 0.00 35.23 2.92
189 190 1.001745 TGCACACGTTCGACTCGATG 61.002 55.000 14.61 12.49 35.23 3.84
190 191 0.729478 CTGCACACGTTCGACTCGAT 60.729 55.000 14.61 1.73 35.23 3.59
191 192 1.370051 CTGCACACGTTCGACTCGA 60.370 57.895 14.61 0.00 0.00 4.04
192 193 0.933047 TTCTGCACACGTTCGACTCG 60.933 55.000 7.50 7.50 0.00 4.18
193 194 0.503117 GTTCTGCACACGTTCGACTC 59.497 55.000 0.00 0.00 0.00 3.36
194 195 0.102481 AGTTCTGCACACGTTCGACT 59.898 50.000 0.00 0.00 0.00 4.18
195 196 0.503117 GAGTTCTGCACACGTTCGAC 59.497 55.000 0.00 0.00 0.00 4.20
196 197 0.933047 CGAGTTCTGCACACGTTCGA 60.933 55.000 0.00 0.00 35.01 3.71
197 198 1.482955 CGAGTTCTGCACACGTTCG 59.517 57.895 0.00 0.00 35.01 3.95
198 199 0.596600 TCCGAGTTCTGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
199 200 0.597637 CTCCGAGTTCTGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
200 201 1.007271 CTCCGAGTTCTGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
201 202 1.734477 CCTCCGAGTTCTGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
202 203 0.389166 CTCCTCCGAGTTCTGCACAC 60.389 60.000 0.00 0.00 0.00 3.82
203 204 1.967535 CTCCTCCGAGTTCTGCACA 59.032 57.895 0.00 0.00 0.00 4.57
204 205 4.900154 CTCCTCCGAGTTCTGCAC 57.100 61.111 0.00 0.00 0.00 4.57
212 213 2.852431 GAACGCACGACTCCTCCGAG 62.852 65.000 0.00 0.00 42.32 4.63
213 214 2.974489 GAACGCACGACTCCTCCGA 61.974 63.158 0.00 0.00 0.00 4.55
214 215 2.504244 GAACGCACGACTCCTCCG 60.504 66.667 0.00 0.00 0.00 4.63
215 216 2.504244 CGAACGCACGACTCCTCC 60.504 66.667 0.00 0.00 35.09 4.30
216 217 1.915614 TACCGAACGCACGACTCCTC 61.916 60.000 0.00 0.00 35.09 3.71
217 218 1.968017 TACCGAACGCACGACTCCT 60.968 57.895 0.00 0.00 35.09 3.69
218 219 1.799121 GTACCGAACGCACGACTCC 60.799 63.158 0.00 0.00 35.09 3.85
219 220 0.386478 AAGTACCGAACGCACGACTC 60.386 55.000 0.00 0.00 35.09 3.36
220 221 0.662374 CAAGTACCGAACGCACGACT 60.662 55.000 0.00 0.00 35.09 4.18
221 222 0.661187 TCAAGTACCGAACGCACGAC 60.661 55.000 0.00 0.00 35.09 4.34
222 223 0.241749 ATCAAGTACCGAACGCACGA 59.758 50.000 0.00 0.00 35.09 4.35
223 224 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
224 225 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
225 226 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
226 227 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
227 228 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
228 229 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
229 230 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
230 231 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
231 232 0.666913 ATCCGACCGATCAAGTACCG 59.333 55.000 0.00 0.00 0.00 4.02
232 233 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
233 234 1.332997 ACGATCCGACCGATCAAGTAC 59.667 52.381 0.00 0.00 46.85 2.73
234 235 1.332686 CACGATCCGACCGATCAAGTA 59.667 52.381 0.00 0.00 46.85 2.24
235 236 0.100682 CACGATCCGACCGATCAAGT 59.899 55.000 0.00 0.00 46.85 3.16
236 237 0.380733 TCACGATCCGACCGATCAAG 59.619 55.000 0.00 0.00 46.85 3.02
237 238 0.812549 TTCACGATCCGACCGATCAA 59.187 50.000 0.00 0.00 46.85 2.57
238 239 0.380733 CTTCACGATCCGACCGATCA 59.619 55.000 0.00 0.00 46.85 2.92
239 240 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
240 241 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
241 242 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
242 243 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
252 253 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
253 254 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
254 255 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
255 256 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
256 257 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
257 258 2.159653 ACGGTTGATGTAGTCGTACGTC 60.160 50.000 16.05 10.06 43.16 4.34
258 259 1.806542 ACGGTTGATGTAGTCGTACGT 59.193 47.619 16.05 0.00 32.03 3.57
259 260 2.171567 CACGGTTGATGTAGTCGTACG 58.828 52.381 9.53 9.53 32.56 3.67
260 261 3.207474 ACACGGTTGATGTAGTCGTAC 57.793 47.619 0.00 0.00 32.56 3.67
261 262 3.004629 ACAACACGGTTGATGTAGTCGTA 59.995 43.478 19.38 0.00 37.00 3.43
262 263 2.223876 ACAACACGGTTGATGTAGTCGT 60.224 45.455 19.38 0.00 37.00 4.34
263 264 2.154963 CACAACACGGTTGATGTAGTCG 59.845 50.000 19.38 0.00 36.65 4.18
264 265 2.096417 GCACAACACGGTTGATGTAGTC 60.096 50.000 19.38 0.00 36.65 2.59
265 266 1.871039 GCACAACACGGTTGATGTAGT 59.129 47.619 19.38 0.00 36.65 2.73
266 267 2.143122 AGCACAACACGGTTGATGTAG 58.857 47.619 19.38 7.95 36.65 2.74
267 268 2.248280 AGCACAACACGGTTGATGTA 57.752 45.000 19.38 0.00 36.65 2.29
268 269 1.333619 GAAGCACAACACGGTTGATGT 59.666 47.619 19.38 3.82 39.21 3.06
269 270 1.334960 GGAAGCACAACACGGTTGATG 60.335 52.381 19.38 14.76 0.00 3.07
270 271 0.951558 GGAAGCACAACACGGTTGAT 59.048 50.000 19.38 6.12 0.00 2.57
271 272 1.433053 CGGAAGCACAACACGGTTGA 61.433 55.000 19.38 0.00 0.00 3.18
272 273 1.010125 CGGAAGCACAACACGGTTG 60.010 57.895 13.18 13.18 0.00 3.77
273 274 3.416490 CGGAAGCACAACACGGTT 58.584 55.556 0.00 0.00 0.00 4.44
295 296 2.202703 CCCCGTAGACCGAAAGCG 60.203 66.667 0.00 0.00 39.56 4.68
296 297 1.322538 TACCCCCGTAGACCGAAAGC 61.323 60.000 0.00 0.00 39.56 3.51
297 298 0.457443 GTACCCCCGTAGACCGAAAG 59.543 60.000 0.00 0.00 39.56 2.62
298 299 1.312371 CGTACCCCCGTAGACCGAAA 61.312 60.000 0.00 0.00 39.56 3.46
299 300 1.748879 CGTACCCCCGTAGACCGAA 60.749 63.158 0.00 0.00 39.56 4.30
300 301 2.124736 CGTACCCCCGTAGACCGA 60.125 66.667 0.00 0.00 39.56 4.69
301 302 2.438434 ACGTACCCCCGTAGACCG 60.438 66.667 0.00 0.00 39.73 4.79
302 303 2.418083 CCACGTACCCCCGTAGACC 61.418 68.421 0.00 0.00 39.45 3.85
303 304 1.378514 TCCACGTACCCCCGTAGAC 60.379 63.158 0.00 0.00 39.45 2.59
304 305 1.378514 GTCCACGTACCCCCGTAGA 60.379 63.158 0.00 0.00 39.45 2.59
305 306 1.678635 TGTCCACGTACCCCCGTAG 60.679 63.158 0.00 0.00 39.45 3.51
306 307 1.976474 GTGTCCACGTACCCCCGTA 60.976 63.158 0.00 0.00 39.45 4.02
307 308 3.305516 GTGTCCACGTACCCCCGT 61.306 66.667 0.00 0.00 42.87 5.28
308 309 3.304721 TGTGTCCACGTACCCCCG 61.305 66.667 0.00 0.00 0.00 5.73
309 310 2.163601 GAGTGTGTCCACGTACCCCC 62.164 65.000 0.00 0.00 46.56 5.40
310 311 1.291272 GAGTGTGTCCACGTACCCC 59.709 63.158 0.00 0.00 46.56 4.95
311 312 1.080974 CGAGTGTGTCCACGTACCC 60.081 63.158 0.00 0.00 46.56 3.69
312 313 0.386478 GACGAGTGTGTCCACGTACC 60.386 60.000 0.00 0.00 46.56 3.34
313 314 3.083213 GACGAGTGTGTCCACGTAC 57.917 57.895 0.00 0.00 46.56 3.67
320 321 1.235948 ACGAGAGGGACGAGTGTGTC 61.236 60.000 0.00 0.00 38.17 3.67
321 322 0.822532 AACGAGAGGGACGAGTGTGT 60.823 55.000 0.00 0.00 34.70 3.72
322 323 0.387367 CAACGAGAGGGACGAGTGTG 60.387 60.000 0.00 0.00 34.70 3.82
323 324 0.822532 ACAACGAGAGGGACGAGTGT 60.823 55.000 0.00 0.00 34.70 3.55
324 325 0.314302 AACAACGAGAGGGACGAGTG 59.686 55.000 0.00 0.00 34.70 3.51
325 326 1.901591 TAACAACGAGAGGGACGAGT 58.098 50.000 0.00 0.00 34.70 4.18
326 327 2.798680 CATAACAACGAGAGGGACGAG 58.201 52.381 0.00 0.00 34.70 4.18
327 328 1.135199 GCATAACAACGAGAGGGACGA 60.135 52.381 0.00 0.00 34.70 4.20
328 329 1.278238 GCATAACAACGAGAGGGACG 58.722 55.000 0.00 0.00 0.00 4.79
329 330 2.380084 TGCATAACAACGAGAGGGAC 57.620 50.000 0.00 0.00 0.00 4.46
330 331 2.499693 TGATGCATAACAACGAGAGGGA 59.500 45.455 0.00 0.00 0.00 4.20
331 332 2.609459 GTGATGCATAACAACGAGAGGG 59.391 50.000 9.51 0.00 0.00 4.30
332 333 2.609459 GGTGATGCATAACAACGAGAGG 59.391 50.000 16.28 0.00 0.00 3.69
333 334 3.261580 TGGTGATGCATAACAACGAGAG 58.738 45.455 16.28 0.00 0.00 3.20
334 335 3.326836 TGGTGATGCATAACAACGAGA 57.673 42.857 16.28 0.00 0.00 4.04
335 336 3.622612 TCATGGTGATGCATAACAACGAG 59.377 43.478 16.28 3.04 0.00 4.18
336 337 3.604582 TCATGGTGATGCATAACAACGA 58.395 40.909 16.28 0.00 0.00 3.85
337 338 4.274214 AGATCATGGTGATGCATAACAACG 59.726 41.667 16.28 0.00 37.20 4.10
338 339 5.762825 AGATCATGGTGATGCATAACAAC 57.237 39.130 16.28 6.50 37.20 3.32
339 340 5.450826 GCAAGATCATGGTGATGCATAACAA 60.451 40.000 16.28 4.95 37.20 2.83
340 341 4.037089 GCAAGATCATGGTGATGCATAACA 59.963 41.667 16.28 8.10 37.20 2.41
341 342 4.543692 GCAAGATCATGGTGATGCATAAC 58.456 43.478 5.51 5.51 37.20 1.89
342 343 3.251487 CGCAAGATCATGGTGATGCATAA 59.749 43.478 0.00 0.00 37.20 1.90
343 344 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
344 345 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
345 346 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
346 347 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
347 348 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
348 349 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
349 350 1.001860 TCACACGCAAGATCATGGTGA 59.998 47.619 19.56 12.85 43.62 4.02
350 351 1.395954 CTCACACGCAAGATCATGGTG 59.604 52.381 14.17 14.17 43.62 4.17
351 352 1.002430 ACTCACACGCAAGATCATGGT 59.998 47.619 0.00 0.00 43.62 3.55
352 353 1.730501 ACTCACACGCAAGATCATGG 58.269 50.000 0.00 0.00 43.62 3.66
353 354 4.926860 TTTACTCACACGCAAGATCATG 57.073 40.909 0.00 0.00 43.62 3.07
354 355 7.792374 ATATTTTACTCACACGCAAGATCAT 57.208 32.000 0.00 0.00 43.62 2.45
355 356 7.609760 AATATTTTACTCACACGCAAGATCA 57.390 32.000 0.00 0.00 43.62 2.92
356 357 8.895932 AAAATATTTTACTCACACGCAAGATC 57.104 30.769 11.76 0.00 43.62 2.75
380 381 8.705594 TGTTGGGGAATGTAGTAATTTCAAAAA 58.294 29.630 0.00 0.00 0.00 1.94
381 382 8.251383 TGTTGGGGAATGTAGTAATTTCAAAA 57.749 30.769 0.00 0.00 0.00 2.44
382 383 7.524698 GCTGTTGGGGAATGTAGTAATTTCAAA 60.525 37.037 0.00 0.00 0.00 2.69
383 384 6.071616 GCTGTTGGGGAATGTAGTAATTTCAA 60.072 38.462 0.00 0.00 0.00 2.69
384 385 5.417580 GCTGTTGGGGAATGTAGTAATTTCA 59.582 40.000 0.00 0.00 0.00 2.69
385 386 5.417580 TGCTGTTGGGGAATGTAGTAATTTC 59.582 40.000 0.00 0.00 0.00 2.17
386 387 5.329399 TGCTGTTGGGGAATGTAGTAATTT 58.671 37.500 0.00 0.00 0.00 1.82
387 388 4.929479 TGCTGTTGGGGAATGTAGTAATT 58.071 39.130 0.00 0.00 0.00 1.40
388 389 4.584638 TGCTGTTGGGGAATGTAGTAAT 57.415 40.909 0.00 0.00 0.00 1.89
389 390 4.374689 TTGCTGTTGGGGAATGTAGTAA 57.625 40.909 0.00 0.00 0.00 2.24
390 391 4.374689 TTTGCTGTTGGGGAATGTAGTA 57.625 40.909 0.00 0.00 0.00 1.82
391 392 2.969821 TTGCTGTTGGGGAATGTAGT 57.030 45.000 0.00 0.00 0.00 2.73
392 393 4.497300 CATTTTGCTGTTGGGGAATGTAG 58.503 43.478 0.00 0.00 0.00 2.74
393 394 3.260380 CCATTTTGCTGTTGGGGAATGTA 59.740 43.478 0.00 0.00 0.00 2.29
394 395 2.038820 CCATTTTGCTGTTGGGGAATGT 59.961 45.455 0.00 0.00 0.00 2.71
395 396 2.302445 TCCATTTTGCTGTTGGGGAATG 59.698 45.455 0.00 0.00 0.00 2.67
396 397 2.618794 TCCATTTTGCTGTTGGGGAAT 58.381 42.857 0.00 0.00 0.00 3.01
397 398 2.094100 TCCATTTTGCTGTTGGGGAA 57.906 45.000 0.00 0.00 0.00 3.97
398 399 1.901159 CATCCATTTTGCTGTTGGGGA 59.099 47.619 0.00 0.00 0.00 4.81
399 400 1.624813 ACATCCATTTTGCTGTTGGGG 59.375 47.619 0.00 0.00 0.00 4.96
400 401 4.160065 TGATACATCCATTTTGCTGTTGGG 59.840 41.667 0.00 0.00 0.00 4.12
401 402 5.327616 TGATACATCCATTTTGCTGTTGG 57.672 39.130 0.00 0.00 0.00 3.77
402 403 6.256975 CCATTGATACATCCATTTTGCTGTTG 59.743 38.462 0.00 0.00 0.00 3.33
403 404 6.154877 TCCATTGATACATCCATTTTGCTGTT 59.845 34.615 0.00 0.00 0.00 3.16
404 405 5.657745 TCCATTGATACATCCATTTTGCTGT 59.342 36.000 0.00 0.00 0.00 4.40
405 406 6.040054 TCTCCATTGATACATCCATTTTGCTG 59.960 38.462 0.00 0.00 0.00 4.41
406 407 6.131264 TCTCCATTGATACATCCATTTTGCT 58.869 36.000 0.00 0.00 0.00 3.91
426 427 3.369451 GCGTGATCTCTTGAAAGTTCTCC 59.631 47.826 0.00 0.00 0.00 3.71
524 525 0.792640 AGAAACGTCAGCAAGCATCG 59.207 50.000 0.00 0.00 0.00 3.84
541 542 4.581868 ACCGATTACCAAATTTCGGAAGA 58.418 39.130 18.34 3.58 42.63 2.87
625 830 9.740239 CAATGAGATTTGAGTTTTCTTTTCTCA 57.260 29.630 0.00 0.00 41.61 3.27
699 935 3.811083 TCTGTAGGAGTTTCCGCAAAAA 58.189 40.909 0.00 0.00 42.75 1.94
700 936 3.478857 TCTGTAGGAGTTTCCGCAAAA 57.521 42.857 0.00 0.00 42.75 2.44
701 937 3.478857 TTCTGTAGGAGTTTCCGCAAA 57.521 42.857 0.00 0.00 42.75 3.68
702 938 3.135994 GTTTCTGTAGGAGTTTCCGCAA 58.864 45.455 0.00 0.00 42.75 4.85
703 939 2.103432 TGTTTCTGTAGGAGTTTCCGCA 59.897 45.455 0.00 0.00 42.75 5.69
704 940 2.762745 TGTTTCTGTAGGAGTTTCCGC 58.237 47.619 0.00 0.00 42.75 5.54
705 941 4.994852 TCAATGTTTCTGTAGGAGTTTCCG 59.005 41.667 0.00 0.00 42.75 4.30
706 942 6.655003 TCATCAATGTTTCTGTAGGAGTTTCC 59.345 38.462 0.00 0.00 36.58 3.13
707 943 7.672983 TCATCAATGTTTCTGTAGGAGTTTC 57.327 36.000 0.00 0.00 0.00 2.78
708 944 9.739276 TTATCATCAATGTTTCTGTAGGAGTTT 57.261 29.630 0.00 0.00 0.00 2.66
709 945 9.911788 ATTATCATCAATGTTTCTGTAGGAGTT 57.088 29.630 0.00 0.00 0.00 3.01
892 1135 2.673326 GCAAAGGCAAGAGGAATGCTTC 60.673 50.000 0.00 0.00 43.34 3.86
893 1136 1.274447 GCAAAGGCAAGAGGAATGCTT 59.726 47.619 0.00 0.00 43.34 3.91
923 1167 3.135712 GGTTTGGAAGTGGGGAAATTTGT 59.864 43.478 0.00 0.00 0.00 2.83
935 1179 1.301479 GACGCGAGGGTTTGGAAGT 60.301 57.895 15.93 0.00 0.00 3.01
968 1214 2.144078 GGGTGGGGTTGGGGTTTTG 61.144 63.158 0.00 0.00 0.00 2.44
1920 2185 2.031012 GGGATCATGATGGCGCGA 59.969 61.111 14.30 0.00 0.00 5.87
2109 2374 1.183030 TGTCCGTGTCCGATCCAGTT 61.183 55.000 0.00 0.00 35.63 3.16
2130 2395 2.283532 AGCTCTGCCTCCGTGTCT 60.284 61.111 0.00 0.00 0.00 3.41
2180 2451 3.728221 GTCGTCGTCATCATCATCAGAAG 59.272 47.826 0.00 0.00 0.00 2.85
2207 2478 6.122964 TCGTATCCATCTGAAGAGAAAGAGA 58.877 40.000 0.00 0.00 0.00 3.10
2208 2479 6.384258 TCGTATCCATCTGAAGAGAAAGAG 57.616 41.667 0.00 0.00 0.00 2.85
2209 2480 5.300539 CCTCGTATCCATCTGAAGAGAAAGA 59.699 44.000 0.00 0.00 0.00 2.52
2210 2481 5.068460 ACCTCGTATCCATCTGAAGAGAAAG 59.932 44.000 0.00 0.00 0.00 2.62
2211 2482 4.956700 ACCTCGTATCCATCTGAAGAGAAA 59.043 41.667 0.00 0.00 0.00 2.52
2212 2483 4.537751 ACCTCGTATCCATCTGAAGAGAA 58.462 43.478 0.00 0.00 0.00 2.87
2726 3003 5.685337 GCATCATAGCTATCATCATCCTGCT 60.685 44.000 2.34 0.00 34.92 4.24
2805 3083 4.562143 GGCTACGACTAGTTCCTTCCAAAA 60.562 45.833 0.00 0.00 0.00 2.44
2839 3117 5.515270 GGATTGTAAATTAAGCAAACTCGGC 59.485 40.000 0.00 0.00 0.00 5.54
2887 3165 3.742433 AGAGATAACCAAGATCGCCTG 57.258 47.619 0.00 0.00 0.00 4.85
3031 3309 6.068794 AGGAAAGAGCTGAGGGGTAAATAAAT 60.069 38.462 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.