Multiple sequence alignment - TraesCS2A01G261200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G261200 chr2A 100.000 8260 0 0 1 8260 411951117 411942858 0.000000e+00 15254.0
1 TraesCS2A01G261200 chr2A 87.709 179 22 0 997 1175 132876428 132876250 8.400000e-50 209.0
2 TraesCS2A01G261200 chr2A 80.095 211 30 9 210 415 572366398 572366601 6.680000e-31 147.0
3 TraesCS2A01G261200 chr2D 93.808 5103 193 61 3 5062 318909660 318914682 0.000000e+00 7559.0
4 TraesCS2A01G261200 chr2D 94.143 3022 105 28 5060 8037 318914791 318917784 0.000000e+00 4534.0
5 TraesCS2A01G261200 chr2D 86.592 179 24 0 997 1175 126149544 126149366 1.820000e-46 198.0
6 TraesCS2A01G261200 chr2D 81.340 209 31 6 210 415 417793318 417793115 6.630000e-36 163.0
7 TraesCS2A01G261200 chr2B 94.008 2737 90 28 1798 4501 387699303 387701998 0.000000e+00 4078.0
8 TraesCS2A01G261200 chr2B 95.059 2550 78 14 5202 7725 387703382 387705909 0.000000e+00 3967.0
9 TraesCS2A01G261200 chr2B 93.824 1765 51 21 3 1750 387697579 387699302 0.000000e+00 2603.0
10 TraesCS2A01G261200 chr2B 96.402 667 20 4 4499 5164 387702330 387702993 0.000000e+00 1096.0
11 TraesCS2A01G261200 chr2B 92.760 221 6 5 7711 7929 387707263 387707475 2.240000e-80 311.0
12 TraesCS2A01G261200 chr2B 87.709 179 22 0 997 1175 180059840 180059662 8.400000e-50 209.0
13 TraesCS2A01G261200 chr2B 93.506 77 4 1 7957 8033 387707537 387707612 6.780000e-21 113.0
14 TraesCS2A01G261200 chr1D 91.525 236 18 2 8027 8260 18039887 18040122 2.880000e-84 324.0
15 TraesCS2A01G261200 chr1D 90.708 226 19 2 8037 8260 5290532 5290307 4.850000e-77 300.0
16 TraesCS2A01G261200 chr6D 91.228 228 16 3 8037 8260 191800828 191801055 2.900000e-79 307.0
17 TraesCS2A01G261200 chr4D 91.556 225 15 4 8039 8260 232694681 232694904 2.900000e-79 307.0
18 TraesCS2A01G261200 chr4D 90.667 225 17 4 8039 8260 461475012 461474789 6.270000e-76 296.0
19 TraesCS2A01G261200 chr5D 91.818 220 16 2 8038 8256 352421419 352421201 1.040000e-78 305.0
20 TraesCS2A01G261200 chr5D 90.741 54 5 0 6734 6787 467177492 467177439 1.150000e-08 73.1
21 TraesCS2A01G261200 chrUn 90.351 228 18 3 8037 8260 97196286 97196059 6.270000e-76 296.0
22 TraesCS2A01G261200 chrUn 90.222 225 21 1 8037 8260 45623335 45623111 8.110000e-75 292.0
23 TraesCS2A01G261200 chrUn 93.182 44 1 2 7987 8030 85544033 85544074 6.920000e-06 63.9
24 TraesCS2A01G261200 chrUn 93.182 44 1 2 7987 8030 361522352 361522311 6.920000e-06 63.9
25 TraesCS2A01G261200 chr5B 90.351 228 17 5 8035 8260 547927379 547927155 2.250000e-75 294.0
26 TraesCS2A01G261200 chr5B 90.741 54 5 0 6734 6787 573803766 573803713 1.150000e-08 73.1
27 TraesCS2A01G261200 chr5A 90.741 54 5 0 6734 6787 587412352 587412299 1.150000e-08 73.1
28 TraesCS2A01G261200 chr7D 93.182 44 1 2 7987 8030 326725279 326725320 6.920000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G261200 chr2A 411942858 411951117 8259 True 15254.0 15254 100.000000 1 8260 1 chr2A.!!$R2 8259
1 TraesCS2A01G261200 chr2D 318909660 318917784 8124 False 6046.5 7559 93.975500 3 8037 2 chr2D.!!$F1 8034
2 TraesCS2A01G261200 chr2B 387697579 387707612 10033 False 2028.0 4078 94.259833 3 8033 6 chr2B.!!$F1 8030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 675 0.250081 GGCGATGGATGGAGGAGTTC 60.250 60.000 0.00 0.0 0.00 3.01 F
1631 1662 0.028770 CTAGCTGGCTCGTCTTCTCG 59.971 60.000 0.00 0.0 0.00 4.04 F
2007 2046 1.271054 GCTTCCAAGAAGTGAGCTGGA 60.271 52.381 0.00 0.0 0.00 3.86 F
2989 3061 1.000359 GGGGGCTGGTGCAAACTAT 60.000 57.895 0.00 0.0 41.91 2.12 F
3315 3394 1.074405 TCTTTGAAGCTGGCATCCTGT 59.926 47.619 0.00 0.0 0.00 4.00 F
3691 3771 1.633432 TGACCGGGATTTGATTGTCCT 59.367 47.619 6.32 0.0 34.84 3.85 F
5174 5705 3.901570 TTTCTGATTGGGATATGGGGG 57.098 47.619 0.00 0.0 0.00 5.40 F
6842 7751 0.108186 CACTGCCCGTTGCTGATCTA 60.108 55.000 7.82 0.0 41.11 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2126 0.320771 AGTCGGGTTCACTGCATGTC 60.321 55.000 0.00 0.00 0.00 3.06 R
2699 2761 2.534349 GTCGTCTTGTATATGTGGCACG 59.466 50.000 13.77 0.00 0.00 5.34 R
3662 3742 0.894835 AATCCCGGTCATTTGCAACC 59.105 50.000 0.00 0.00 0.00 3.77 R
4752 5170 1.398041 CATATGCAACTGTGTCACCCG 59.602 52.381 0.00 0.00 0.00 5.28 R
5215 6096 3.007614 AGCCATGTCTACTTGTTTACCGT 59.992 43.478 0.00 0.00 0.00 4.83 R
5361 6244 1.673920 GGACGTTGCAAGTGAGGAAAA 59.326 47.619 0.00 0.00 0.00 2.29 R
6948 7869 0.415429 TTTGGGTATGGGCATGGGTT 59.585 50.000 0.00 0.00 0.00 4.11 R
8200 10535 0.037590 TTCTTATGCCAGCCGGTTGT 59.962 50.000 17.69 1.06 33.28 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.005554 CCTCATGAAGATGCAAACGACT 58.994 45.455 0.00 0.00 0.00 4.18
46 47 2.474816 ACGACTCAGAACTTCACTTGC 58.525 47.619 0.00 0.00 0.00 4.01
62 63 0.756294 TTGCCTTCTCACCAACGAGA 59.244 50.000 0.00 0.00 40.29 4.04
70 71 1.227147 CACCAACGAGACACACCGT 60.227 57.895 0.00 0.00 41.14 4.83
128 130 1.699634 GTGCCTATGGGATGGAAGCTA 59.300 52.381 0.00 0.00 33.58 3.32
139 141 1.656587 TGGAAGCTAAAGAGAGGGCA 58.343 50.000 0.00 0.00 0.00 5.36
140 142 1.556911 TGGAAGCTAAAGAGAGGGCAG 59.443 52.381 0.00 0.00 0.00 4.85
161 163 5.223382 CAGCGTTCTACCTCGATTATGATT 58.777 41.667 0.00 0.00 0.00 2.57
171 173 6.878317 ACCTCGATTATGATTGTGAGAAGAA 58.122 36.000 0.00 0.00 0.00 2.52
192 194 3.107601 ACATGATGTACTACAGGCCTGT 58.892 45.455 38.92 38.92 46.87 4.00
227 229 4.757019 TCTGATACTCCAGACTACGACT 57.243 45.455 0.00 0.00 38.18 4.18
242 244 6.208994 AGACTACGACTCTAATTCCAACTGTT 59.791 38.462 0.00 0.00 0.00 3.16
275 277 8.632906 TTAGTTAGTAGGCATGGTATCTACTC 57.367 38.462 5.64 0.00 41.67 2.59
341 348 7.919091 TGTTACATGTATGTACTTGCTACTAGC 59.081 37.037 6.36 0.61 42.48 3.42
453 465 8.908786 TGAATAGAGCAAAGTAATAATGAGGG 57.091 34.615 0.00 0.00 0.00 4.30
454 466 7.939039 TGAATAGAGCAAAGTAATAATGAGGGG 59.061 37.037 0.00 0.00 0.00 4.79
488 500 3.165071 GTGATTTCCCCACCAGTCAAAT 58.835 45.455 0.00 0.00 0.00 2.32
572 584 6.393171 CCAAAGGCAGATTTAGAAAGGAAAG 58.607 40.000 0.00 0.00 0.00 2.62
643 655 2.100846 CCATCACACATGGGAAGCG 58.899 57.895 0.00 0.00 35.58 4.68
644 656 1.378882 CCATCACACATGGGAAGCGG 61.379 60.000 0.00 0.00 35.58 5.52
645 657 1.077501 ATCACACATGGGAAGCGGG 60.078 57.895 0.00 0.00 0.00 6.13
663 675 0.250081 GGCGATGGATGGAGGAGTTC 60.250 60.000 0.00 0.00 0.00 3.01
998 1022 1.957177 AGCTAGATCGCGAAATCAGGA 59.043 47.619 15.24 0.00 34.40 3.86
999 1023 2.560542 AGCTAGATCGCGAAATCAGGAT 59.439 45.455 15.24 0.00 34.40 3.24
1251 1275 1.174783 CATTTCTGCCTCTGCTTGCT 58.825 50.000 0.00 0.00 38.71 3.91
1252 1276 2.362736 CATTTCTGCCTCTGCTTGCTA 58.637 47.619 0.00 0.00 38.71 3.49
1253 1277 2.795231 TTTCTGCCTCTGCTTGCTAT 57.205 45.000 0.00 0.00 38.71 2.97
1254 1278 3.912496 TTTCTGCCTCTGCTTGCTATA 57.088 42.857 0.00 0.00 38.71 1.31
1274 1298 2.128290 TATATGCCCATGCCGCTGCT 62.128 55.000 0.70 0.00 38.71 4.24
1275 1299 7.989226 TATATATATGCCCATGCCGCTGCTG 62.989 48.000 5.44 0.00 38.71 4.41
1280 1304 4.607606 CATGCCGCTGCTGCATCG 62.608 66.667 25.48 18.00 46.04 3.84
1328 1356 3.204827 TACCTCGCCGTACGCTCC 61.205 66.667 10.49 0.00 43.23 4.70
1572 1602 2.286872 CTGCTGCAGTTGCTAGCTTAT 58.713 47.619 21.21 0.00 41.95 1.73
1631 1662 0.028770 CTAGCTGGCTCGTCTTCTCG 59.971 60.000 0.00 0.00 0.00 4.04
1787 1822 3.195610 TGTGACACGAGAAGGCAGATTAT 59.804 43.478 0.22 0.00 0.00 1.28
2007 2046 1.271054 GCTTCCAAGAAGTGAGCTGGA 60.271 52.381 0.00 0.00 0.00 3.86
2087 2126 3.550639 CGCATCTTCTTCTGCCTCTCTAG 60.551 52.174 0.00 0.00 34.89 2.43
2272 2316 8.490311 ACTCCTATTTATTTCTCTCCCTCTTTG 58.510 37.037 0.00 0.00 0.00 2.77
2284 2328 1.475682 CCCTCTTTGCCTCTTTGATGC 59.524 52.381 0.00 0.00 0.00 3.91
2285 2329 2.444421 CCTCTTTGCCTCTTTGATGCT 58.556 47.619 0.00 0.00 0.00 3.79
2286 2330 3.614092 CCTCTTTGCCTCTTTGATGCTA 58.386 45.455 0.00 0.00 0.00 3.49
2287 2331 3.376546 CCTCTTTGCCTCTTTGATGCTAC 59.623 47.826 0.00 0.00 0.00 3.58
2288 2332 3.347216 TCTTTGCCTCTTTGATGCTACC 58.653 45.455 0.00 0.00 0.00 3.18
2289 2333 2.128771 TTGCCTCTTTGATGCTACCC 57.871 50.000 0.00 0.00 0.00 3.69
2340 2387 8.674607 AGCTCGGTTTTATTTGGTAGAAATAAG 58.325 33.333 0.00 0.00 34.67 1.73
2414 2461 6.455360 TTGTTCATTGATAGGGAGCAATTC 57.545 37.500 0.00 0.00 38.53 2.17
2474 2532 7.567571 CGATGTAAATCGCTAATGATGAAACT 58.432 34.615 1.56 0.00 37.24 2.66
2847 2916 8.512956 TCTCTATAGTCTATATTTTCGTGTGCC 58.487 37.037 0.00 0.00 0.00 5.01
2849 2918 8.635328 TCTATAGTCTATATTTTCGTGTGCCAA 58.365 33.333 0.00 0.00 0.00 4.52
2928 3000 5.562696 CGGATTAAGAGCTTCTTTTGTTGCA 60.563 40.000 4.15 0.00 37.89 4.08
2985 3057 2.203625 GAAGGGGGCTGGTGCAAA 60.204 61.111 0.00 0.00 41.91 3.68
2989 3061 1.000359 GGGGGCTGGTGCAAACTAT 60.000 57.895 0.00 0.00 41.91 2.12
3110 3182 2.885135 ACAGCCATCCATTCAACTCA 57.115 45.000 0.00 0.00 0.00 3.41
3132 3204 8.992073 ACTCATTGTTGATAAATTTTTCTTGCC 58.008 29.630 9.59 0.00 0.00 4.52
3176 3255 7.774625 TGTCCTGTAATGCTTCAATCATTATCA 59.225 33.333 0.00 0.00 38.29 2.15
3237 3316 7.895429 TCCTTTTATCAAGGATTCATGGTTCTT 59.105 33.333 0.00 0.00 41.27 2.52
3238 3317 8.193438 CCTTTTATCAAGGATTCATGGTTCTTC 58.807 37.037 0.00 0.00 39.81 2.87
3239 3318 8.884124 TTTTATCAAGGATTCATGGTTCTTCT 57.116 30.769 0.00 0.00 0.00 2.85
3247 3326 6.328672 AGGATTCATGGTTCTTCTATACAGCT 59.671 38.462 0.00 0.00 0.00 4.24
3315 3394 1.074405 TCTTTGAAGCTGGCATCCTGT 59.926 47.619 0.00 0.00 0.00 4.00
3597 3677 4.391830 TGCTAAGCCTTGTACTGATTTTCG 59.608 41.667 0.00 0.00 0.00 3.46
3619 3699 8.958119 TTCGAAGGCATAATTAGTACTCAAAT 57.042 30.769 0.00 0.00 0.00 2.32
3691 3771 1.633432 TGACCGGGATTTGATTGTCCT 59.367 47.619 6.32 0.00 34.84 3.85
3969 4049 7.925483 TGAATTAACCTTCTTGTTGTTGGATTG 59.075 33.333 0.00 0.00 0.00 2.67
4154 4234 4.554973 GCTTTCGAAATGTGTAGCATTCAC 59.445 41.667 11.70 0.00 46.29 3.18
4181 4261 7.116736 TGTCCTTAAACTGATTAATCCCCTTC 58.883 38.462 12.90 0.00 33.15 3.46
4206 4286 4.065088 CTCGGATTTTGTCTCACCAAGAA 58.935 43.478 0.00 0.00 35.21 2.52
4384 4465 9.525826 GGATATCATCCTCCTTCACATTTTTAT 57.474 33.333 4.83 0.00 46.19 1.40
4405 4489 4.840716 TTAAATTCGGCCACCTAGGTAA 57.159 40.909 15.80 5.18 40.61 2.85
4423 4507 7.928706 CCTAGGTAAATGAACGAAGAGATCATT 59.071 37.037 0.00 0.00 43.62 2.57
4440 4524 4.922471 TCATTGATGGGCATGTGTATTG 57.078 40.909 0.00 0.00 0.00 1.90
4707 5125 7.039784 AGCTTCACAAAATAGCCTTTGTATTCA 60.040 33.333 8.39 0.00 45.51 2.57
4712 5130 9.206870 CACAAAATAGCCTTTGTATTCACATTT 57.793 29.630 8.39 0.00 45.51 2.32
4752 5170 6.334102 TCATAACCATTGTAAACCAACCAC 57.666 37.500 0.00 0.00 35.44 4.16
4782 5200 6.800543 ACACAGTTGCATATGTTTTTGTACA 58.199 32.000 4.29 0.00 0.00 2.90
5112 5642 6.516739 TTTGTATGGTGTGTGAACTTTTGA 57.483 33.333 0.00 0.00 0.00 2.69
5125 5655 6.649141 TGTGAACTTTTGACGCTATATGTTCT 59.351 34.615 0.00 0.00 35.16 3.01
5174 5705 3.901570 TTTCTGATTGGGATATGGGGG 57.098 47.619 0.00 0.00 0.00 5.40
5215 6096 9.643735 AATCCGGTTTACACCCAATATATTTTA 57.356 29.630 0.00 0.00 40.52 1.52
5216 6097 8.449251 TCCGGTTTACACCCAATATATTTTAC 57.551 34.615 0.00 0.00 40.52 2.01
5243 6125 4.558226 ACAAGTAGACATGGCTTGATGA 57.442 40.909 6.27 0.00 41.31 2.92
5315 6197 9.490663 GACCATGATATAAAAAGTTCAAAGTCG 57.509 33.333 0.00 0.00 0.00 4.18
5453 6336 0.463204 ACCTCAGATCCACATGCGAG 59.537 55.000 0.00 0.00 0.00 5.03
5710 6594 7.836842 TGTCTGCTGTTCTAGTATCATTGTTA 58.163 34.615 0.00 0.00 0.00 2.41
5712 6596 6.980978 TCTGCTGTTCTAGTATCATTGTTAGC 59.019 38.462 0.00 0.00 0.00 3.09
5733 6617 2.966708 CGACAAAATGCAAGAAGTGACG 59.033 45.455 0.00 0.00 0.00 4.35
5737 6621 4.142491 ACAAAATGCAAGAAGTGACGTGAA 60.142 37.500 0.00 0.00 0.00 3.18
5840 6729 0.819582 AAGGAGCGCATGGATTTTGG 59.180 50.000 11.47 0.00 0.00 3.28
5845 6734 1.410153 AGCGCATGGATTTTGGGATTC 59.590 47.619 11.47 0.00 0.00 2.52
5885 6774 8.743714 ACTAGATCAATCATATGAGTTATGCGA 58.256 33.333 11.78 2.25 38.07 5.10
5955 6844 7.048512 CACCTTATAAACAAAGGAGGGAGTAG 58.951 42.308 8.79 0.00 45.41 2.57
6009 6898 9.209048 ACATTACCTTACCATCTACTCACATTA 57.791 33.333 0.00 0.00 0.00 1.90
6068 6968 7.660959 CGGTAAAAGATGTTCTTAGTTACGTC 58.339 38.462 0.00 0.00 35.27 4.34
6279 7179 8.964772 AGCTGCTGAATTAAGATGATTTAAAGT 58.035 29.630 0.00 0.00 0.00 2.66
6354 7254 5.994054 TCTGAATCTCAAAGAACTCCAACAG 59.006 40.000 0.00 0.00 0.00 3.16
6391 7291 3.376546 GGAGAGTTCATTGAAGCACATCC 59.623 47.826 0.00 0.61 0.00 3.51
6529 7436 3.369997 GTTGCAAACCCTTTCCTTTTGGA 60.370 43.478 0.00 0.00 44.12 3.53
6554 7461 8.579850 ACTTTTGAGAATGTTATTATCTGGCA 57.420 30.769 0.00 0.00 0.00 4.92
6585 7494 7.695480 TTCCAATGATAAAGTTTCCGATCAA 57.305 32.000 4.14 0.00 32.34 2.57
6671 7580 5.506708 ACAGAAGAAGGTAACAACCAAACT 58.493 37.500 0.00 0.00 41.41 2.66
6687 7596 7.042051 ACAACCAAACTTATTATCATCGATCCG 60.042 37.037 0.00 0.00 0.00 4.18
6692 7601 5.411781 ACTTATTATCATCGATCCGCCTTC 58.588 41.667 0.00 0.00 0.00 3.46
6829 7738 7.282450 AGCACCTATAATTACTTAAACACTGCC 59.718 37.037 0.00 0.00 0.00 4.85
6842 7751 0.108186 CACTGCCCGTTGCTGATCTA 60.108 55.000 7.82 0.00 41.11 1.98
6948 7869 2.520458 CACCAAGCCCAGACCCAA 59.480 61.111 0.00 0.00 0.00 4.12
6949 7870 1.152567 CACCAAGCCCAGACCCAAA 60.153 57.895 0.00 0.00 0.00 3.28
6950 7871 1.152546 ACCAAGCCCAGACCCAAAC 60.153 57.895 0.00 0.00 0.00 2.93
6951 7872 1.908299 CCAAGCCCAGACCCAAACC 60.908 63.158 0.00 0.00 0.00 3.27
6952 7873 1.908299 CAAGCCCAGACCCAAACCC 60.908 63.158 0.00 0.00 0.00 4.11
6953 7874 2.399607 AAGCCCAGACCCAAACCCA 61.400 57.895 0.00 0.00 0.00 4.51
6954 7875 1.739608 AAGCCCAGACCCAAACCCAT 61.740 55.000 0.00 0.00 0.00 4.00
6955 7876 1.984026 GCCCAGACCCAAACCCATG 60.984 63.158 0.00 0.00 0.00 3.66
6956 7877 1.984026 CCCAGACCCAAACCCATGC 60.984 63.158 0.00 0.00 0.00 4.06
6957 7878 1.984026 CCAGACCCAAACCCATGCC 60.984 63.158 0.00 0.00 0.00 4.40
6958 7879 1.984026 CAGACCCAAACCCATGCCC 60.984 63.158 0.00 0.00 0.00 5.36
6959 7880 2.119391 GACCCAAACCCATGCCCA 59.881 61.111 0.00 0.00 0.00 5.36
6975 7896 1.829666 GCCCATACCCAAAACCAACCT 60.830 52.381 0.00 0.00 0.00 3.50
7065 7986 5.125417 ACAGAACATTTGGTATGTACATGCC 59.875 40.000 30.00 30.00 42.93 4.40
7139 8060 4.394300 AGTTCATCTTCTTGTGTATGCAGC 59.606 41.667 0.00 0.00 0.00 5.25
7214 8138 2.047465 CAGCAGGCTCAGCTTCGT 60.047 61.111 0.00 0.00 41.14 3.85
7223 8147 1.808133 GCTCAGCTTCGTATTGGAGGG 60.808 57.143 0.00 0.00 0.00 4.30
7275 8203 4.455877 ACGCTTGAGGAAGAGGTTTAATTG 59.544 41.667 0.00 0.00 33.54 2.32
7279 8207 4.934356 TGAGGAAGAGGTTTAATTGCCAT 58.066 39.130 0.00 0.00 0.00 4.40
7407 8336 2.158986 AGAGATCAGGAATGCTGGTTCG 60.159 50.000 1.05 0.00 0.00 3.95
7531 8460 6.183360 GCTTAATTATGGAAAGCTAGGTTGCA 60.183 38.462 14.58 7.70 41.85 4.08
7678 8607 0.471617 CAACATGGAGGCCCTAGAGG 59.528 60.000 0.00 0.00 39.47 3.69
7764 10057 5.575995 GGAATGTCACGTCTAGAGGTAAAAC 59.424 44.000 17.23 15.10 0.00 2.43
7806 10099 5.297278 AGACGTCAACACTATCTCTACCATC 59.703 44.000 19.50 0.00 0.00 3.51
7829 10122 7.372451 TCGTGTATAGCTATGCTTTTGTTTT 57.628 32.000 20.58 0.00 40.44 2.43
7830 10123 7.240674 TCGTGTATAGCTATGCTTTTGTTTTG 58.759 34.615 20.58 3.08 40.44 2.44
7901 10197 6.512297 TGCCTTTCTTGTGTTTTAATCCTTC 58.488 36.000 0.00 0.00 0.00 3.46
8033 10368 4.142469 GCACCAACCAAGTCCATACAATAC 60.142 45.833 0.00 0.00 0.00 1.89
8037 10372 6.723977 ACCAACCAAGTCCATACAATACATTT 59.276 34.615 0.00 0.00 0.00 2.32
8038 10373 7.234577 ACCAACCAAGTCCATACAATACATTTT 59.765 33.333 0.00 0.00 0.00 1.82
8039 10374 8.093927 CCAACCAAGTCCATACAATACATTTTT 58.906 33.333 0.00 0.00 0.00 1.94
8069 10404 3.791640 GGGGCTCCCTGGTTTTTG 58.208 61.111 4.74 0.00 41.34 2.44
8070 10405 2.583441 GGGGCTCCCTGGTTTTTGC 61.583 63.158 4.74 0.00 41.34 3.68
8071 10406 1.836604 GGGCTCCCTGGTTTTTGCA 60.837 57.895 0.00 0.00 0.00 4.08
8072 10407 1.194121 GGGCTCCCTGGTTTTTGCAT 61.194 55.000 0.00 0.00 0.00 3.96
8073 10408 0.247460 GGCTCCCTGGTTTTTGCATC 59.753 55.000 0.00 0.00 0.00 3.91
8074 10409 0.109132 GCTCCCTGGTTTTTGCATCG 60.109 55.000 0.00 0.00 0.00 3.84
8075 10410 0.527565 CTCCCTGGTTTTTGCATCGG 59.472 55.000 0.00 0.00 0.00 4.18
8076 10411 0.111446 TCCCTGGTTTTTGCATCGGA 59.889 50.000 0.00 0.00 0.00 4.55
8077 10412 0.965439 CCCTGGTTTTTGCATCGGAA 59.035 50.000 0.00 0.00 0.00 4.30
8078 10413 1.336795 CCCTGGTTTTTGCATCGGAAC 60.337 52.381 0.00 0.00 0.00 3.62
8094 10429 2.998668 GAACGATGCATACGGTCAAG 57.001 50.000 23.01 3.59 45.18 3.02
8095 10430 2.268298 GAACGATGCATACGGTCAAGT 58.732 47.619 23.01 4.09 45.18 3.16
8096 10431 2.380084 ACGATGCATACGGTCAAGTT 57.620 45.000 18.34 0.00 34.93 2.66
8097 10432 2.695359 ACGATGCATACGGTCAAGTTT 58.305 42.857 18.34 0.00 34.93 2.66
8098 10433 3.852286 ACGATGCATACGGTCAAGTTTA 58.148 40.909 18.34 0.00 34.93 2.01
8099 10434 4.439057 ACGATGCATACGGTCAAGTTTAT 58.561 39.130 18.34 0.00 34.93 1.40
8100 10435 5.593968 ACGATGCATACGGTCAAGTTTATA 58.406 37.500 18.34 0.00 34.93 0.98
8101 10436 6.044046 ACGATGCATACGGTCAAGTTTATAA 58.956 36.000 18.34 0.00 34.93 0.98
8102 10437 6.535865 ACGATGCATACGGTCAAGTTTATAAA 59.464 34.615 18.34 0.00 34.93 1.40
8103 10438 7.225931 ACGATGCATACGGTCAAGTTTATAAAT 59.774 33.333 18.34 0.00 34.93 1.40
8104 10439 8.705134 CGATGCATACGGTCAAGTTTATAAATA 58.295 33.333 0.00 0.00 0.00 1.40
8107 10442 8.339714 TGCATACGGTCAAGTTTATAAATAAGC 58.660 33.333 0.31 0.00 0.00 3.09
8108 10443 8.339714 GCATACGGTCAAGTTTATAAATAAGCA 58.660 33.333 0.31 0.00 0.00 3.91
8109 10444 9.864034 CATACGGTCAAGTTTATAAATAAGCAG 57.136 33.333 0.31 0.00 0.00 4.24
8110 10445 9.826574 ATACGGTCAAGTTTATAAATAAGCAGA 57.173 29.630 0.31 0.00 0.00 4.26
8111 10446 8.732746 ACGGTCAAGTTTATAAATAAGCAGAT 57.267 30.769 0.31 0.00 0.00 2.90
8112 10447 9.826574 ACGGTCAAGTTTATAAATAAGCAGATA 57.173 29.630 0.31 0.00 0.00 1.98
8124 10459 7.396540 AAATAAGCAGATAGGTTCAACAAGG 57.603 36.000 0.00 0.00 39.08 3.61
8125 10460 4.373156 AAGCAGATAGGTTCAACAAGGT 57.627 40.909 0.00 0.00 30.75 3.50
8126 10461 4.373156 AGCAGATAGGTTCAACAAGGTT 57.627 40.909 0.00 0.00 0.00 3.50
8127 10462 4.729868 AGCAGATAGGTTCAACAAGGTTT 58.270 39.130 0.00 0.00 0.00 3.27
8128 10463 5.140454 AGCAGATAGGTTCAACAAGGTTTT 58.860 37.500 0.00 0.00 0.00 2.43
8129 10464 6.303839 AGCAGATAGGTTCAACAAGGTTTTA 58.696 36.000 0.00 0.00 0.00 1.52
8130 10465 6.775629 AGCAGATAGGTTCAACAAGGTTTTAA 59.224 34.615 0.00 0.00 0.00 1.52
8131 10466 7.286775 AGCAGATAGGTTCAACAAGGTTTTAAA 59.713 33.333 0.00 0.00 0.00 1.52
8132 10467 7.595130 GCAGATAGGTTCAACAAGGTTTTAAAG 59.405 37.037 0.00 0.00 0.00 1.85
8133 10468 8.630037 CAGATAGGTTCAACAAGGTTTTAAAGT 58.370 33.333 0.00 0.00 0.00 2.66
8134 10469 8.847196 AGATAGGTTCAACAAGGTTTTAAAGTC 58.153 33.333 0.00 0.00 0.00 3.01
8135 10470 8.762481 ATAGGTTCAACAAGGTTTTAAAGTCT 57.238 30.769 0.00 0.00 0.00 3.24
8136 10471 7.096884 AGGTTCAACAAGGTTTTAAAGTCTC 57.903 36.000 0.00 0.00 0.00 3.36
8137 10472 6.661805 AGGTTCAACAAGGTTTTAAAGTCTCA 59.338 34.615 0.00 0.00 0.00 3.27
8138 10473 7.177744 AGGTTCAACAAGGTTTTAAAGTCTCAA 59.822 33.333 0.00 0.00 0.00 3.02
8139 10474 7.815549 GGTTCAACAAGGTTTTAAAGTCTCAAA 59.184 33.333 0.00 0.00 0.00 2.69
8140 10475 8.644619 GTTCAACAAGGTTTTAAAGTCTCAAAC 58.355 33.333 0.00 0.00 0.00 2.93
8141 10476 7.024768 TCAACAAGGTTTTAAAGTCTCAAACG 58.975 34.615 0.00 0.00 32.18 3.60
8142 10477 6.746745 ACAAGGTTTTAAAGTCTCAAACGA 57.253 33.333 0.00 0.00 32.18 3.85
8143 10478 6.782150 ACAAGGTTTTAAAGTCTCAAACGAG 58.218 36.000 0.00 0.00 32.18 4.18
8144 10479 6.596497 ACAAGGTTTTAAAGTCTCAAACGAGA 59.404 34.615 0.00 0.00 37.19 4.04
8145 10480 6.846325 AGGTTTTAAAGTCTCAAACGAGAG 57.154 37.500 0.00 0.00 40.22 3.20
8160 10495 3.915536 ACGAGAGTAAAGGAAAGCTCAC 58.084 45.455 0.00 0.00 46.88 3.51
8161 10496 3.321111 ACGAGAGTAAAGGAAAGCTCACA 59.679 43.478 0.00 0.00 46.88 3.58
8162 10497 4.202223 ACGAGAGTAAAGGAAAGCTCACAA 60.202 41.667 0.00 0.00 46.88 3.33
8163 10498 4.750098 CGAGAGTAAAGGAAAGCTCACAAA 59.250 41.667 0.00 0.00 0.00 2.83
8164 10499 5.107298 CGAGAGTAAAGGAAAGCTCACAAAG 60.107 44.000 0.00 0.00 0.00 2.77
8165 10500 5.930135 AGAGTAAAGGAAAGCTCACAAAGA 58.070 37.500 0.00 0.00 0.00 2.52
8175 10510 2.985406 CTCACAAAGAGCCAAAGAGC 57.015 50.000 0.00 0.00 37.59 4.09
8176 10511 1.538950 CTCACAAAGAGCCAAAGAGCC 59.461 52.381 0.00 0.00 37.59 4.70
8177 10512 1.133823 TCACAAAGAGCCAAAGAGCCA 60.134 47.619 0.00 0.00 0.00 4.75
8178 10513 1.682854 CACAAAGAGCCAAAGAGCCAA 59.317 47.619 0.00 0.00 0.00 4.52
8179 10514 2.298163 CACAAAGAGCCAAAGAGCCAAT 59.702 45.455 0.00 0.00 0.00 3.16
8180 10515 3.507233 CACAAAGAGCCAAAGAGCCAATA 59.493 43.478 0.00 0.00 0.00 1.90
8181 10516 4.022068 CACAAAGAGCCAAAGAGCCAATAA 60.022 41.667 0.00 0.00 0.00 1.40
8182 10517 4.021981 ACAAAGAGCCAAAGAGCCAATAAC 60.022 41.667 0.00 0.00 0.00 1.89
8183 10518 3.439857 AGAGCCAAAGAGCCAATAACA 57.560 42.857 0.00 0.00 0.00 2.41
8184 10519 3.766545 AGAGCCAAAGAGCCAATAACAA 58.233 40.909 0.00 0.00 0.00 2.83
8185 10520 4.151883 AGAGCCAAAGAGCCAATAACAAA 58.848 39.130 0.00 0.00 0.00 2.83
8186 10521 4.021981 AGAGCCAAAGAGCCAATAACAAAC 60.022 41.667 0.00 0.00 0.00 2.93
8187 10522 3.897505 AGCCAAAGAGCCAATAACAAACT 59.102 39.130 0.00 0.00 0.00 2.66
8188 10523 5.076873 AGCCAAAGAGCCAATAACAAACTA 58.923 37.500 0.00 0.00 0.00 2.24
8189 10524 5.183904 AGCCAAAGAGCCAATAACAAACTAG 59.816 40.000 0.00 0.00 0.00 2.57
8190 10525 5.402398 CCAAAGAGCCAATAACAAACTAGC 58.598 41.667 0.00 0.00 0.00 3.42
8191 10526 5.402398 CAAAGAGCCAATAACAAACTAGCC 58.598 41.667 0.00 0.00 0.00 3.93
8192 10527 4.301072 AGAGCCAATAACAAACTAGCCA 57.699 40.909 0.00 0.00 0.00 4.75
8193 10528 4.662278 AGAGCCAATAACAAACTAGCCAA 58.338 39.130 0.00 0.00 0.00 4.52
8194 10529 5.076873 AGAGCCAATAACAAACTAGCCAAA 58.923 37.500 0.00 0.00 0.00 3.28
8195 10530 5.538433 AGAGCCAATAACAAACTAGCCAAAA 59.462 36.000 0.00 0.00 0.00 2.44
8196 10531 6.041523 AGAGCCAATAACAAACTAGCCAAAAA 59.958 34.615 0.00 0.00 0.00 1.94
8197 10532 6.223120 AGCCAATAACAAACTAGCCAAAAAG 58.777 36.000 0.00 0.00 0.00 2.27
8198 10533 5.107104 GCCAATAACAAACTAGCCAAAAAGC 60.107 40.000 0.00 0.00 0.00 3.51
8199 10534 5.408299 CCAATAACAAACTAGCCAAAAAGCC 59.592 40.000 0.00 0.00 0.00 4.35
8200 10535 5.799827 ATAACAAACTAGCCAAAAAGCCA 57.200 34.783 0.00 0.00 0.00 4.75
8201 10536 3.452755 ACAAACTAGCCAAAAAGCCAC 57.547 42.857 0.00 0.00 0.00 5.01
8202 10537 2.763448 ACAAACTAGCCAAAAAGCCACA 59.237 40.909 0.00 0.00 0.00 4.17
8203 10538 3.196685 ACAAACTAGCCAAAAAGCCACAA 59.803 39.130 0.00 0.00 0.00 3.33
8204 10539 3.452755 AACTAGCCAAAAAGCCACAAC 57.547 42.857 0.00 0.00 0.00 3.32
8205 10540 1.686587 ACTAGCCAAAAAGCCACAACC 59.313 47.619 0.00 0.00 0.00 3.77
8206 10541 0.671251 TAGCCAAAAAGCCACAACCG 59.329 50.000 0.00 0.00 0.00 4.44
8207 10542 1.594021 GCCAAAAAGCCACAACCGG 60.594 57.895 0.00 0.00 0.00 5.28
8215 10550 2.045438 CCACAACCGGCTGGCATA 60.045 61.111 12.89 0.00 39.70 3.14
8216 10551 1.677300 CCACAACCGGCTGGCATAA 60.677 57.895 12.89 0.00 39.70 1.90
8217 10552 1.656818 CCACAACCGGCTGGCATAAG 61.657 60.000 12.89 0.00 39.70 1.73
8218 10553 0.676466 CACAACCGGCTGGCATAAGA 60.676 55.000 12.89 0.00 39.70 2.10
8219 10554 0.037590 ACAACCGGCTGGCATAAGAA 59.962 50.000 12.89 0.00 39.70 2.52
8220 10555 1.173043 CAACCGGCTGGCATAAGAAA 58.827 50.000 12.89 0.00 39.70 2.52
8221 10556 1.133025 CAACCGGCTGGCATAAGAAAG 59.867 52.381 12.89 0.00 39.70 2.62
8222 10557 0.618458 ACCGGCTGGCATAAGAAAGA 59.382 50.000 12.89 0.00 39.70 2.52
8223 10558 1.212935 ACCGGCTGGCATAAGAAAGAT 59.787 47.619 12.89 0.00 39.70 2.40
8224 10559 2.438021 ACCGGCTGGCATAAGAAAGATA 59.562 45.455 12.89 0.00 39.70 1.98
8225 10560 3.070018 CCGGCTGGCATAAGAAAGATAG 58.930 50.000 0.00 0.00 0.00 2.08
8226 10561 3.070018 CGGCTGGCATAAGAAAGATAGG 58.930 50.000 1.08 0.00 0.00 2.57
8227 10562 3.244215 CGGCTGGCATAAGAAAGATAGGA 60.244 47.826 1.08 0.00 0.00 2.94
8228 10563 4.322567 GGCTGGCATAAGAAAGATAGGAG 58.677 47.826 0.00 0.00 0.00 3.69
8229 10564 4.040952 GGCTGGCATAAGAAAGATAGGAGA 59.959 45.833 0.00 0.00 0.00 3.71
8230 10565 5.455326 GGCTGGCATAAGAAAGATAGGAGAA 60.455 44.000 0.00 0.00 0.00 2.87
8231 10566 5.468409 GCTGGCATAAGAAAGATAGGAGAAC 59.532 44.000 0.00 0.00 0.00 3.01
8232 10567 6.687647 GCTGGCATAAGAAAGATAGGAGAACT 60.688 42.308 0.00 0.00 0.00 3.01
8233 10568 7.472100 GCTGGCATAAGAAAGATAGGAGAACTA 60.472 40.741 0.00 0.00 35.80 2.24
8234 10569 8.319057 TGGCATAAGAAAGATAGGAGAACTAA 57.681 34.615 0.00 0.00 34.79 2.24
8235 10570 8.938883 TGGCATAAGAAAGATAGGAGAACTAAT 58.061 33.333 0.00 0.00 34.79 1.73
8236 10571 9.785982 GGCATAAGAAAGATAGGAGAACTAATT 57.214 33.333 0.00 0.00 34.79 1.40
8239 10574 9.785982 ATAAGAAAGATAGGAGAACTAATTGCC 57.214 33.333 0.00 0.00 34.79 4.52
8240 10575 7.444703 AGAAAGATAGGAGAACTAATTGCCT 57.555 36.000 0.00 0.00 34.79 4.75
8241 10576 8.554490 AGAAAGATAGGAGAACTAATTGCCTA 57.446 34.615 0.00 0.00 34.79 3.93
8242 10577 9.165057 AGAAAGATAGGAGAACTAATTGCCTAT 57.835 33.333 0.00 0.00 42.88 2.57
8245 10580 7.489239 GATAGGAGAACTAATTGCCTATCCT 57.511 40.000 13.59 10.81 46.05 3.24
8246 10581 8.596781 GATAGGAGAACTAATTGCCTATCCTA 57.403 38.462 13.59 10.93 46.05 2.94
8247 10582 9.207868 GATAGGAGAACTAATTGCCTATCCTAT 57.792 37.037 16.83 16.83 46.05 2.57
8248 10583 7.880265 AGGAGAACTAATTGCCTATCCTATT 57.120 36.000 2.53 0.00 34.21 1.73
8249 10584 8.974292 AGGAGAACTAATTGCCTATCCTATTA 57.026 34.615 2.53 0.00 34.21 0.98
8250 10585 8.817876 AGGAGAACTAATTGCCTATCCTATTAC 58.182 37.037 2.53 0.00 34.21 1.89
8251 10586 8.594550 GGAGAACTAATTGCCTATCCTATTACA 58.405 37.037 0.00 0.00 0.00 2.41
8253 10588 9.950496 AGAACTAATTGCCTATCCTATTACATG 57.050 33.333 0.00 0.00 0.00 3.21
8254 10589 9.944376 GAACTAATTGCCTATCCTATTACATGA 57.056 33.333 0.00 0.00 0.00 3.07
8255 10590 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
8256 10591 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
8257 10592 5.499004 TTGCCTATCCTATTACATGACCC 57.501 43.478 0.00 0.00 0.00 4.46
8258 10593 3.844211 TGCCTATCCTATTACATGACCCC 59.156 47.826 0.00 0.00 0.00 4.95
8259 10594 3.844211 GCCTATCCTATTACATGACCCCA 59.156 47.826 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.699083 TCTTCATGAGGGTGCACTGAA 59.301 47.619 17.98 16.34 0.00 3.02
1 2 1.351076 TCTTCATGAGGGTGCACTGA 58.649 50.000 17.98 9.29 0.00 3.41
31 32 3.134623 TGAGAAGGCAAGTGAAGTTCTGA 59.865 43.478 4.17 0.00 0.00 3.27
46 47 1.068588 TGTGTCTCGTTGGTGAGAAGG 59.931 52.381 0.00 0.00 46.02 3.46
62 63 2.660189 CCGAAATAGGTACGGTGTGT 57.340 50.000 0.00 0.00 41.47 3.72
128 130 1.066787 GTAGAACGCTGCCCTCTCTTT 60.067 52.381 1.75 0.00 0.00 2.52
139 141 5.221263 ACAATCATAATCGAGGTAGAACGCT 60.221 40.000 0.00 0.00 0.00 5.07
140 142 4.982916 ACAATCATAATCGAGGTAGAACGC 59.017 41.667 0.00 0.00 0.00 4.84
161 163 7.227049 TGTAGTACATCATGTTCTTCTCACA 57.773 36.000 1.80 0.00 30.57 3.58
171 173 3.107601 ACAGGCCTGTAGTACATCATGT 58.892 45.455 37.12 8.23 42.90 3.21
192 194 1.067295 ATCAGAACCAGGAGTGCCAA 58.933 50.000 0.00 0.00 36.29 4.52
293 300 5.692204 ACACGTGTTCAACAAAAATTCAACA 59.308 32.000 17.22 0.00 0.00 3.33
469 481 3.954258 CCTATTTGACTGGTGGGGAAATC 59.046 47.826 0.00 0.00 0.00 2.17
488 500 4.659529 TCTCTCTCTTGACTGGAACCTA 57.340 45.455 0.00 0.00 0.00 3.08
572 584 1.301293 CCAGCCCCTCTTCACTTCC 59.699 63.158 0.00 0.00 0.00 3.46
639 651 3.466791 CTCCATCCATCGCCCGCTT 62.467 63.158 0.00 0.00 0.00 4.68
641 653 4.996434 CCTCCATCCATCGCCCGC 62.996 72.222 0.00 0.00 0.00 6.13
642 654 3.231889 CTCCTCCATCCATCGCCCG 62.232 68.421 0.00 0.00 0.00 6.13
643 655 1.700042 AACTCCTCCATCCATCGCCC 61.700 60.000 0.00 0.00 0.00 6.13
644 656 0.250081 GAACTCCTCCATCCATCGCC 60.250 60.000 0.00 0.00 0.00 5.54
645 657 0.465705 TGAACTCCTCCATCCATCGC 59.534 55.000 0.00 0.00 0.00 4.58
663 675 0.600782 AAAAATGGCAGCGCAGGTTG 60.601 50.000 11.47 0.00 33.74 3.77
998 1022 2.111043 CCTTGCCGCGACCCATAT 59.889 61.111 8.23 0.00 0.00 1.78
999 1023 3.395702 ACCTTGCCGCGACCCATA 61.396 61.111 8.23 0.00 0.00 2.74
1251 1275 3.806858 GCAGCGGCATGGGCATATATATA 60.807 47.826 3.18 0.00 43.71 0.86
1252 1276 2.854963 CAGCGGCATGGGCATATATAT 58.145 47.619 1.45 0.00 43.71 0.86
1253 1277 1.746861 GCAGCGGCATGGGCATATATA 60.747 52.381 3.18 0.00 43.71 0.86
1254 1278 1.033746 GCAGCGGCATGGGCATATAT 61.034 55.000 3.18 0.00 43.71 0.86
1274 1298 3.513515 TCCCTATATGTATGTGCGATGCA 59.486 43.478 0.00 0.00 35.60 3.96
1275 1299 4.115516 CTCCCTATATGTATGTGCGATGC 58.884 47.826 0.00 0.00 0.00 3.91
1276 1300 4.442052 CCCTCCCTATATGTATGTGCGATG 60.442 50.000 0.00 0.00 0.00 3.84
1280 1304 3.452627 CCTCCCTCCCTATATGTATGTGC 59.547 52.174 0.00 0.00 0.00 4.57
1511 1541 5.877012 CCTGTAGCACACAAACTCAGAATAT 59.123 40.000 0.00 0.00 36.48 1.28
1561 1591 5.247084 TCGTTACCCAAAATAAGCTAGCAA 58.753 37.500 18.83 4.69 0.00 3.91
1566 1596 6.827586 TCAAATCGTTACCCAAAATAAGCT 57.172 33.333 0.00 0.00 0.00 3.74
1572 1602 7.014808 AGGAGAAAATCAAATCGTTACCCAAAA 59.985 33.333 0.00 0.00 0.00 2.44
1631 1662 2.010497 GGAGCACGAGAAAGGAAATCC 58.990 52.381 0.00 0.00 0.00 3.01
1787 1822 2.266279 GGGCTGGGGCTCAGTATAATA 58.734 52.381 17.19 0.00 45.08 0.98
1982 2021 2.808202 GCTCACTTCTTGGAAGCTGTGA 60.808 50.000 7.14 11.22 36.90 3.58
2007 2046 0.390860 GTCTGTCACTGGCTCACTGT 59.609 55.000 0.00 0.00 0.00 3.55
2087 2126 0.320771 AGTCGGGTTCACTGCATGTC 60.321 55.000 0.00 0.00 0.00 3.06
2156 2196 7.236640 ACTGAAGAAGAGTAAGAAGAGGGATTT 59.763 37.037 0.00 0.00 0.00 2.17
2157 2197 6.728632 ACTGAAGAAGAGTAAGAAGAGGGATT 59.271 38.462 0.00 0.00 0.00 3.01
2272 2316 0.548510 AGGGGTAGCATCAAAGAGGC 59.451 55.000 0.00 0.00 39.81 4.70
2340 2387 2.977772 AGCTGTGAAGCTGGTCTATC 57.022 50.000 0.00 0.00 44.44 2.08
2699 2761 2.534349 GTCGTCTTGTATATGTGGCACG 59.466 50.000 13.77 0.00 0.00 5.34
2799 2866 4.712051 TGTGCAGCCTATTTATCTGGAT 57.288 40.909 0.00 0.00 31.16 3.41
2800 2867 4.349048 AGATGTGCAGCCTATTTATCTGGA 59.651 41.667 0.00 0.00 0.00 3.86
2801 2868 4.649692 AGATGTGCAGCCTATTTATCTGG 58.350 43.478 0.00 0.00 0.00 3.86
2802 2869 5.549347 AGAGATGTGCAGCCTATTTATCTG 58.451 41.667 0.00 0.00 0.00 2.90
2985 3057 4.980573 TGTAAAACAGCCAAGGTGATAGT 58.019 39.130 0.05 0.00 34.87 2.12
2989 3061 3.892284 TCTTGTAAAACAGCCAAGGTGA 58.108 40.909 0.05 0.00 36.94 4.02
3022 3094 8.861086 CAATTGTAGAGGAACCTTATAGAGCTA 58.139 37.037 0.00 0.00 0.00 3.32
3110 3182 8.674263 TGTGGCAAGAAAAATTTATCAACAAT 57.326 26.923 0.00 0.00 0.00 2.71
3176 3255 6.899393 ACACATGTGATATCAAGGTTTGTT 57.101 33.333 31.94 0.47 0.00 2.83
3226 3305 6.818644 GTGAAGCTGTATAGAAGAACCATGAA 59.181 38.462 0.00 0.00 0.00 2.57
3237 3316 5.667539 AGAAAGCAGTGAAGCTGTATAGA 57.332 39.130 0.00 0.00 45.89 1.98
3238 3317 7.834068 TTAAGAAAGCAGTGAAGCTGTATAG 57.166 36.000 0.00 0.00 45.89 1.31
3239 3318 8.094548 TCTTTAAGAAAGCAGTGAAGCTGTATA 58.905 33.333 0.00 0.00 45.89 1.47
3247 3326 5.241506 CACCCATCTTTAAGAAAGCAGTGAA 59.758 40.000 0.00 0.00 38.39 3.18
3261 3340 8.906867 CACAAAACATATATCTCACCCATCTTT 58.093 33.333 0.00 0.00 0.00 2.52
3315 3394 3.831323 TCAGTCTTGATTGCCTTGGAAA 58.169 40.909 0.00 0.00 0.00 3.13
3458 3537 3.699038 GCAATAGCTTATCACAAACCCCA 59.301 43.478 0.00 0.00 37.91 4.96
3512 3592 3.268023 ACCAGCACTAAGAAGCATACC 57.732 47.619 0.00 0.00 0.00 2.73
3577 3657 5.642063 CCTTCGAAAATCAGTACAAGGCTTA 59.358 40.000 0.00 0.00 0.00 3.09
3662 3742 0.894835 AATCCCGGTCATTTGCAACC 59.105 50.000 0.00 0.00 0.00 3.77
3671 3751 1.633432 AGGACAATCAAATCCCGGTCA 59.367 47.619 0.00 0.00 35.38 4.02
3691 3771 2.655090 TGTCAGTCCATGCCTTTTGA 57.345 45.000 0.00 0.00 0.00 2.69
3969 4049 8.603242 TCATAACTAACTTTCTCTGTTTGGAC 57.397 34.615 0.00 0.00 0.00 4.02
4005 4085 9.965824 GTAAGGTGATTCTGAATTTCTCAAAAA 57.034 29.630 4.11 0.00 32.17 1.94
4099 4179 2.686405 GTCGACAAAACCCCTTTTCACT 59.314 45.455 11.55 0.00 0.00 3.41
4154 4234 7.062957 AGGGGATTAATCAGTTTAAGGACATG 58.937 38.462 17.07 0.00 33.40 3.21
4181 4261 3.599343 TGGTGAGACAAAATCCGAGATG 58.401 45.455 0.00 0.00 0.00 2.90
4206 4286 5.072741 AGAGCATCCACACATTACAAGTTT 58.927 37.500 0.00 0.00 33.66 2.66
4286 4366 5.629849 CCTTACTAAACGATCTTATCTGCCG 59.370 44.000 0.00 0.00 0.00 5.69
4384 4465 4.840716 TTACCTAGGTGGCCGAATTTAA 57.159 40.909 25.33 3.39 40.22 1.52
4391 4472 2.285977 GTTCATTTACCTAGGTGGCCG 58.714 52.381 25.33 10.48 40.22 6.13
4405 4489 5.530171 CCCATCAATGATCTCTTCGTTCATT 59.470 40.000 0.00 0.00 40.80 2.57
4423 4507 4.167652 TGATCAATACACATGCCCATCA 57.832 40.909 0.00 0.00 0.00 3.07
4440 4524 6.939132 AGTGGACATCATTCAAAGATGATC 57.061 37.500 9.59 3.75 43.15 2.92
4477 4561 9.586435 TGTGTATTATATACTGCATGCTATGAC 57.414 33.333 20.33 8.67 0.00 3.06
4659 5077 3.868619 AGGTAGGTTAAGTTTGTGGCA 57.131 42.857 0.00 0.00 0.00 4.92
4669 5087 9.444600 CTATTTTGTGAAGCTTAGGTAGGTTAA 57.555 33.333 0.00 0.00 44.30 2.01
4707 5125 5.306678 TGAAAGGGCCAAATACAAGAAATGT 59.693 36.000 6.18 0.00 46.36 2.71
4712 5130 5.420739 GGTTATGAAAGGGCCAAATACAAGA 59.579 40.000 6.18 0.00 0.00 3.02
4752 5170 1.398041 CATATGCAACTGTGTCACCCG 59.602 52.381 0.00 0.00 0.00 5.28
4782 5200 7.342799 AGCCAAGTTCATGTAAATTCCATATGT 59.657 33.333 1.24 0.00 0.00 2.29
5112 5642 3.069729 GGACCCTTCAGAACATATAGCGT 59.930 47.826 0.00 0.00 0.00 5.07
5141 5671 5.010516 CCCAATCAGAAAATAACCACACACA 59.989 40.000 0.00 0.00 0.00 3.72
5142 5672 5.242838 TCCCAATCAGAAAATAACCACACAC 59.757 40.000 0.00 0.00 0.00 3.82
5144 5674 5.975693 TCCCAATCAGAAAATAACCACAC 57.024 39.130 0.00 0.00 0.00 3.82
5146 5676 7.255942 CCCATATCCCAATCAGAAAATAACCAC 60.256 40.741 0.00 0.00 0.00 4.16
5215 6096 3.007614 AGCCATGTCTACTTGTTTACCGT 59.992 43.478 0.00 0.00 0.00 4.83
5216 6097 3.596214 AGCCATGTCTACTTGTTTACCG 58.404 45.455 0.00 0.00 0.00 4.02
5361 6244 1.673920 GGACGTTGCAAGTGAGGAAAA 59.326 47.619 0.00 0.00 0.00 2.29
5532 6416 7.387643 ACTAGTCCTAGGCTTTTTCTGTAAAG 58.612 38.462 2.96 0.00 37.49 1.85
5539 6423 5.314529 ACCAAACTAGTCCTAGGCTTTTTC 58.685 41.667 2.96 0.00 37.49 2.29
5710 6594 2.618241 TCACTTCTTGCATTTTGTCGCT 59.382 40.909 0.00 0.00 0.00 4.93
5712 6596 2.966708 CGTCACTTCTTGCATTTTGTCG 59.033 45.455 0.00 0.00 0.00 4.35
5840 6729 3.635591 AGTTGATGGTCAATGGGAATCC 58.364 45.455 0.00 0.00 38.79 3.01
5845 6734 5.039920 TGATCTAGTTGATGGTCAATGGG 57.960 43.478 0.00 0.00 38.79 4.00
5928 6817 6.502863 ACTCCCTCCTTTGTTTATAAGGTGTA 59.497 38.462 0.00 0.00 42.29 2.90
5977 6866 8.788325 AGTAGATGGTAAGGTAATGTGAAAAC 57.212 34.615 0.00 0.00 0.00 2.43
5981 6870 6.666113 TGTGAGTAGATGGTAAGGTAATGTGA 59.334 38.462 0.00 0.00 0.00 3.58
6010 6899 9.726438 GGAACTACCACTATCAATATGCTTATT 57.274 33.333 0.00 0.00 38.79 1.40
6068 6968 4.080863 AGAGGTAGGCAAGTACAAGAATGG 60.081 45.833 0.00 0.00 0.00 3.16
6279 7179 7.037658 TGCCTGCAGGATAATATAATCCAGTTA 60.038 37.037 37.21 0.00 46.81 2.24
6291 7191 1.216064 TGAGGTGCCTGCAGGATAAT 58.784 50.000 37.21 18.41 37.39 1.28
6292 7192 1.134007 CATGAGGTGCCTGCAGGATAA 60.134 52.381 37.21 17.83 37.39 1.75
6391 7291 7.061752 AGAAAATAACAACCTTTCTCGATCG 57.938 36.000 9.36 9.36 35.03 3.69
6529 7436 8.579850 TGCCAGATAATAACATTCTCAAAAGT 57.420 30.769 0.00 0.00 0.00 2.66
6564 7471 8.915871 ACAATTGATCGGAAACTTTATCATTG 57.084 30.769 13.59 0.00 0.00 2.82
6671 7580 4.221924 TGGAAGGCGGATCGATGATAATAA 59.778 41.667 0.54 0.00 0.00 1.40
6687 7596 9.103861 GAAACTAGCTATATCATAATGGAAGGC 57.896 37.037 0.00 0.00 0.00 4.35
6829 7738 3.797039 TGAAGGATTAGATCAGCAACGG 58.203 45.455 0.00 0.00 0.00 4.44
6842 7751 6.376581 CACCAGCTAGAGAAAATTGAAGGATT 59.623 38.462 0.00 0.00 0.00 3.01
6948 7869 0.415429 TTTGGGTATGGGCATGGGTT 59.585 50.000 0.00 0.00 0.00 4.11
6949 7870 0.415429 TTTTGGGTATGGGCATGGGT 59.585 50.000 0.00 0.00 0.00 4.51
6950 7871 0.829990 GTTTTGGGTATGGGCATGGG 59.170 55.000 0.00 0.00 0.00 4.00
6951 7872 0.829990 GGTTTTGGGTATGGGCATGG 59.170 55.000 0.00 0.00 0.00 3.66
6952 7873 1.566211 TGGTTTTGGGTATGGGCATG 58.434 50.000 0.00 0.00 0.00 4.06
6953 7874 1.905894 GTTGGTTTTGGGTATGGGCAT 59.094 47.619 0.00 0.00 0.00 4.40
6954 7875 1.343069 GTTGGTTTTGGGTATGGGCA 58.657 50.000 0.00 0.00 0.00 5.36
6955 7876 0.611200 GGTTGGTTTTGGGTATGGGC 59.389 55.000 0.00 0.00 0.00 5.36
6956 7877 2.176045 GAGGTTGGTTTTGGGTATGGG 58.824 52.381 0.00 0.00 0.00 4.00
6957 7878 2.883026 TGAGGTTGGTTTTGGGTATGG 58.117 47.619 0.00 0.00 0.00 2.74
6958 7879 3.306019 GCTTGAGGTTGGTTTTGGGTATG 60.306 47.826 0.00 0.00 0.00 2.39
6959 7880 2.897326 GCTTGAGGTTGGTTTTGGGTAT 59.103 45.455 0.00 0.00 0.00 2.73
6975 7896 1.203441 ATGAGCTGGTCTGGGCTTGA 61.203 55.000 8.47 0.00 39.05 3.02
7151 8072 3.006728 TCCCCACCCATCGTCACC 61.007 66.667 0.00 0.00 0.00 4.02
7407 8336 7.579589 TGAACATGCAACAAAATTATACAGC 57.420 32.000 0.00 0.00 0.00 4.40
7678 8607 4.495422 TCTTCACGAAGAGATGGCTTTAC 58.505 43.478 5.38 0.00 42.06 2.01
7726 8655 6.317140 ACGTGACATTCCTTTCTATCTACGTA 59.683 38.462 0.00 0.00 37.99 3.57
7764 10057 3.492383 CGTCTCTGCAGTATTATTGCCTG 59.508 47.826 14.67 2.72 40.81 4.85
7806 10099 7.021196 ACAAAACAAAAGCATAGCTATACACG 58.979 34.615 5.77 0.00 38.25 4.49
7829 10122 6.844388 ACATTCTGGTATCACTTATAGGGACA 59.156 38.462 0.00 0.00 25.25 4.02
7830 10123 7.304497 ACATTCTGGTATCACTTATAGGGAC 57.696 40.000 0.00 0.00 25.25 4.46
7901 10197 9.626045 GAAGAAAAACAACCTACTATTCATTGG 57.374 33.333 0.00 0.00 0.00 3.16
7914 10210 6.756542 GGGTATGCATATGAAGAAAAACAACC 59.243 38.462 10.16 3.33 0.00 3.77
7932 10228 8.908786 ATTGTGCATATATATGTAGGGTATGC 57.091 34.615 21.10 9.00 44.75 3.14
7989 10324 5.588648 GTGCTTTATCTATAAAGTGGTGGCA 59.411 40.000 18.85 10.72 46.78 4.92
8052 10387 2.583441 GCAAAAACCAGGGAGCCCC 61.583 63.158 0.91 2.16 45.90 5.80
8053 10388 1.194121 ATGCAAAAACCAGGGAGCCC 61.194 55.000 0.00 0.00 0.00 5.19
8054 10389 0.247460 GATGCAAAAACCAGGGAGCC 59.753 55.000 0.00 0.00 0.00 4.70
8055 10390 0.109132 CGATGCAAAAACCAGGGAGC 60.109 55.000 0.00 0.00 0.00 4.70
8056 10391 0.527565 CCGATGCAAAAACCAGGGAG 59.472 55.000 0.00 0.00 0.00 4.30
8057 10392 0.111446 TCCGATGCAAAAACCAGGGA 59.889 50.000 0.00 0.00 0.00 4.20
8058 10393 0.965439 TTCCGATGCAAAAACCAGGG 59.035 50.000 0.00 0.00 0.00 4.45
8059 10394 1.665735 CGTTCCGATGCAAAAACCAGG 60.666 52.381 0.00 0.00 0.00 4.45
8060 10395 1.265635 TCGTTCCGATGCAAAAACCAG 59.734 47.619 0.00 0.00 0.00 4.00
8061 10396 1.309950 TCGTTCCGATGCAAAAACCA 58.690 45.000 0.00 0.00 0.00 3.67
8062 10397 2.629639 ATCGTTCCGATGCAAAAACC 57.370 45.000 0.00 0.00 45.24 3.27
8072 10407 0.248743 GACCGTATGCATCGTTCCGA 60.249 55.000 0.19 0.00 41.13 4.55
8073 10408 0.526739 TGACCGTATGCATCGTTCCG 60.527 55.000 0.19 0.00 0.00 4.30
8074 10409 1.593006 CTTGACCGTATGCATCGTTCC 59.407 52.381 0.19 0.00 0.00 3.62
8075 10410 2.268298 ACTTGACCGTATGCATCGTTC 58.732 47.619 0.19 5.82 0.00 3.95
8076 10411 2.380084 ACTTGACCGTATGCATCGTT 57.620 45.000 0.19 0.00 0.00 3.85
8077 10412 2.380084 AACTTGACCGTATGCATCGT 57.620 45.000 0.19 0.00 0.00 3.73
8078 10413 6.519353 TTATAAACTTGACCGTATGCATCG 57.481 37.500 0.19 7.03 0.00 3.84
8081 10416 8.339714 GCTTATTTATAAACTTGACCGTATGCA 58.660 33.333 0.00 0.00 0.00 3.96
8082 10417 8.339714 TGCTTATTTATAAACTTGACCGTATGC 58.660 33.333 0.00 2.00 0.00 3.14
8083 10418 9.864034 CTGCTTATTTATAAACTTGACCGTATG 57.136 33.333 0.00 0.00 0.00 2.39
8084 10419 9.826574 TCTGCTTATTTATAAACTTGACCGTAT 57.173 29.630 0.00 0.00 0.00 3.06
8085 10420 9.826574 ATCTGCTTATTTATAAACTTGACCGTA 57.173 29.630 0.00 0.00 0.00 4.02
8086 10421 8.732746 ATCTGCTTATTTATAAACTTGACCGT 57.267 30.769 0.00 0.00 0.00 4.83
8098 10433 9.125026 CCTTGTTGAACCTATCTGCTTATTTAT 57.875 33.333 0.00 0.00 0.00 1.40
8099 10434 8.107095 ACCTTGTTGAACCTATCTGCTTATTTA 58.893 33.333 0.00 0.00 0.00 1.40
8100 10435 6.948309 ACCTTGTTGAACCTATCTGCTTATTT 59.052 34.615 0.00 0.00 0.00 1.40
8101 10436 6.485171 ACCTTGTTGAACCTATCTGCTTATT 58.515 36.000 0.00 0.00 0.00 1.40
8102 10437 6.067217 ACCTTGTTGAACCTATCTGCTTAT 57.933 37.500 0.00 0.00 0.00 1.73
8103 10438 5.499004 ACCTTGTTGAACCTATCTGCTTA 57.501 39.130 0.00 0.00 0.00 3.09
8104 10439 4.373156 ACCTTGTTGAACCTATCTGCTT 57.627 40.909 0.00 0.00 0.00 3.91
8105 10440 4.373156 AACCTTGTTGAACCTATCTGCT 57.627 40.909 0.00 0.00 0.00 4.24
8106 10441 5.453567 AAAACCTTGTTGAACCTATCTGC 57.546 39.130 0.00 0.00 0.00 4.26
8107 10442 8.630037 ACTTTAAAACCTTGTTGAACCTATCTG 58.370 33.333 0.00 0.00 0.00 2.90
8108 10443 8.762481 ACTTTAAAACCTTGTTGAACCTATCT 57.238 30.769 0.00 0.00 0.00 1.98
8109 10444 8.847196 AGACTTTAAAACCTTGTTGAACCTATC 58.153 33.333 0.00 0.00 0.00 2.08
8110 10445 8.762481 AGACTTTAAAACCTTGTTGAACCTAT 57.238 30.769 0.00 0.00 0.00 2.57
8111 10446 7.830201 TGAGACTTTAAAACCTTGTTGAACCTA 59.170 33.333 0.00 0.00 0.00 3.08
8112 10447 6.661805 TGAGACTTTAAAACCTTGTTGAACCT 59.338 34.615 0.00 0.00 0.00 3.50
8113 10448 6.859017 TGAGACTTTAAAACCTTGTTGAACC 58.141 36.000 0.00 0.00 0.00 3.62
8114 10449 8.644619 GTTTGAGACTTTAAAACCTTGTTGAAC 58.355 33.333 0.00 0.00 0.00 3.18
8115 10450 7.539366 CGTTTGAGACTTTAAAACCTTGTTGAA 59.461 33.333 0.00 0.00 31.53 2.69
8116 10451 7.024768 CGTTTGAGACTTTAAAACCTTGTTGA 58.975 34.615 0.00 0.00 31.53 3.18
8117 10452 7.024768 TCGTTTGAGACTTTAAAACCTTGTTG 58.975 34.615 0.00 0.00 31.53 3.33
8118 10453 7.120138 TCTCGTTTGAGACTTTAAAACCTTGTT 59.880 33.333 0.00 0.00 46.25 2.83
8119 10454 6.596497 TCTCGTTTGAGACTTTAAAACCTTGT 59.404 34.615 0.00 0.00 46.25 3.16
8120 10455 7.011828 TCTCGTTTGAGACTTTAAAACCTTG 57.988 36.000 0.00 0.00 46.25 3.61
8121 10456 6.822170 ACTCTCGTTTGAGACTTTAAAACCTT 59.178 34.615 9.11 0.00 46.25 3.50
8122 10457 6.346896 ACTCTCGTTTGAGACTTTAAAACCT 58.653 36.000 9.11 0.00 46.25 3.50
8123 10458 6.600246 ACTCTCGTTTGAGACTTTAAAACC 57.400 37.500 9.11 0.00 46.25 3.27
8124 10459 9.634300 CTTTACTCTCGTTTGAGACTTTAAAAC 57.366 33.333 9.11 0.00 46.25 2.43
8125 10460 8.823818 CCTTTACTCTCGTTTGAGACTTTAAAA 58.176 33.333 9.11 0.00 46.25 1.52
8126 10461 8.199449 TCCTTTACTCTCGTTTGAGACTTTAAA 58.801 33.333 9.11 0.00 46.25 1.52
8127 10462 7.719483 TCCTTTACTCTCGTTTGAGACTTTAA 58.281 34.615 9.11 0.00 46.25 1.52
8128 10463 7.281040 TCCTTTACTCTCGTTTGAGACTTTA 57.719 36.000 9.11 0.00 46.25 1.85
8129 10464 6.158023 TCCTTTACTCTCGTTTGAGACTTT 57.842 37.500 9.11 0.00 46.25 2.66
8130 10465 5.786264 TCCTTTACTCTCGTTTGAGACTT 57.214 39.130 9.11 0.00 46.25 3.01
8131 10466 5.786264 TTCCTTTACTCTCGTTTGAGACT 57.214 39.130 9.11 0.00 46.25 3.24
8132 10467 5.107414 GCTTTCCTTTACTCTCGTTTGAGAC 60.107 44.000 9.11 0.00 46.25 3.36
8134 10469 4.991687 AGCTTTCCTTTACTCTCGTTTGAG 59.008 41.667 0.00 0.00 43.99 3.02
8135 10470 4.957296 AGCTTTCCTTTACTCTCGTTTGA 58.043 39.130 0.00 0.00 0.00 2.69
8136 10471 4.750098 TGAGCTTTCCTTTACTCTCGTTTG 59.250 41.667 0.00 0.00 0.00 2.93
8137 10472 4.750598 GTGAGCTTTCCTTTACTCTCGTTT 59.249 41.667 0.00 0.00 0.00 3.60
8138 10473 4.202223 TGTGAGCTTTCCTTTACTCTCGTT 60.202 41.667 0.00 0.00 0.00 3.85
8139 10474 3.321111 TGTGAGCTTTCCTTTACTCTCGT 59.679 43.478 0.00 0.00 0.00 4.18
8140 10475 3.914312 TGTGAGCTTTCCTTTACTCTCG 58.086 45.455 0.00 0.00 0.00 4.04
8141 10476 5.992217 TCTTTGTGAGCTTTCCTTTACTCTC 59.008 40.000 0.00 0.00 0.00 3.20
8142 10477 5.930135 TCTTTGTGAGCTTTCCTTTACTCT 58.070 37.500 0.00 0.00 0.00 3.24
8143 10478 6.234723 CTCTTTGTGAGCTTTCCTTTACTC 57.765 41.667 0.00 0.00 35.84 2.59
8156 10491 1.538950 GGCTCTTTGGCTCTTTGTGAG 59.461 52.381 0.00 0.00 45.33 3.51
8157 10492 1.133823 TGGCTCTTTGGCTCTTTGTGA 60.134 47.619 0.00 0.00 42.34 3.58
8158 10493 1.321474 TGGCTCTTTGGCTCTTTGTG 58.679 50.000 0.00 0.00 42.34 3.33
8159 10494 2.071778 TTGGCTCTTTGGCTCTTTGT 57.928 45.000 0.00 0.00 42.34 2.83
8160 10495 4.022068 TGTTATTGGCTCTTTGGCTCTTTG 60.022 41.667 0.00 0.00 42.34 2.77
8161 10496 4.151883 TGTTATTGGCTCTTTGGCTCTTT 58.848 39.130 0.00 0.00 42.34 2.52
8162 10497 3.766545 TGTTATTGGCTCTTTGGCTCTT 58.233 40.909 0.00 0.00 42.34 2.85
8163 10498 3.439857 TGTTATTGGCTCTTTGGCTCT 57.560 42.857 0.00 0.00 42.34 4.09
8164 10499 4.021981 AGTTTGTTATTGGCTCTTTGGCTC 60.022 41.667 0.00 0.00 42.34 4.70
8165 10500 3.897505 AGTTTGTTATTGGCTCTTTGGCT 59.102 39.130 0.00 0.00 42.34 4.75
8166 10501 4.257267 AGTTTGTTATTGGCTCTTTGGC 57.743 40.909 0.00 0.00 42.18 4.52
8167 10502 5.402398 GCTAGTTTGTTATTGGCTCTTTGG 58.598 41.667 0.00 0.00 0.00 3.28
8168 10503 5.048083 TGGCTAGTTTGTTATTGGCTCTTTG 60.048 40.000 0.00 0.00 0.00 2.77
8169 10504 5.076873 TGGCTAGTTTGTTATTGGCTCTTT 58.923 37.500 0.00 0.00 0.00 2.52
8170 10505 4.662278 TGGCTAGTTTGTTATTGGCTCTT 58.338 39.130 0.00 0.00 0.00 2.85
8171 10506 4.301072 TGGCTAGTTTGTTATTGGCTCT 57.699 40.909 0.00 0.00 0.00 4.09
8172 10507 5.385509 TTTGGCTAGTTTGTTATTGGCTC 57.614 39.130 0.00 0.00 0.00 4.70
8173 10508 5.799827 TTTTGGCTAGTTTGTTATTGGCT 57.200 34.783 0.00 0.00 0.00 4.75
8174 10509 5.107104 GCTTTTTGGCTAGTTTGTTATTGGC 60.107 40.000 0.00 0.00 0.00 4.52
8175 10510 5.408299 GGCTTTTTGGCTAGTTTGTTATTGG 59.592 40.000 0.00 0.00 38.32 3.16
8176 10511 5.988561 TGGCTTTTTGGCTAGTTTGTTATTG 59.011 36.000 0.00 0.00 42.34 1.90
8177 10512 5.989168 GTGGCTTTTTGGCTAGTTTGTTATT 59.011 36.000 0.00 0.00 42.34 1.40
8178 10513 5.069781 TGTGGCTTTTTGGCTAGTTTGTTAT 59.930 36.000 0.00 0.00 42.34 1.89
8179 10514 4.402793 TGTGGCTTTTTGGCTAGTTTGTTA 59.597 37.500 0.00 0.00 42.34 2.41
8180 10515 3.196685 TGTGGCTTTTTGGCTAGTTTGTT 59.803 39.130 0.00 0.00 42.34 2.83
8181 10516 2.763448 TGTGGCTTTTTGGCTAGTTTGT 59.237 40.909 0.00 0.00 42.34 2.83
8182 10517 3.451141 TGTGGCTTTTTGGCTAGTTTG 57.549 42.857 0.00 0.00 42.34 2.93
8183 10518 3.431626 GGTTGTGGCTTTTTGGCTAGTTT 60.432 43.478 0.00 0.00 42.34 2.66
8184 10519 2.102420 GGTTGTGGCTTTTTGGCTAGTT 59.898 45.455 0.00 0.00 42.34 2.24
8185 10520 1.686587 GGTTGTGGCTTTTTGGCTAGT 59.313 47.619 0.00 0.00 42.34 2.57
8186 10521 1.335872 CGGTTGTGGCTTTTTGGCTAG 60.336 52.381 0.00 0.00 42.34 3.42
8187 10522 0.671251 CGGTTGTGGCTTTTTGGCTA 59.329 50.000 0.00 0.00 42.34 3.93
8188 10523 1.441311 CGGTTGTGGCTTTTTGGCT 59.559 52.632 0.00 0.00 42.34 4.75
8189 10524 1.594021 CCGGTTGTGGCTTTTTGGC 60.594 57.895 0.00 0.00 42.18 4.52
8190 10525 4.748409 CCGGTTGTGGCTTTTTGG 57.252 55.556 0.00 0.00 0.00 3.28
8198 10533 1.656818 CTTATGCCAGCCGGTTGTGG 61.657 60.000 17.69 15.43 36.85 4.17
8199 10534 0.676466 TCTTATGCCAGCCGGTTGTG 60.676 55.000 17.69 9.73 33.28 3.33
8200 10535 0.037590 TTCTTATGCCAGCCGGTTGT 59.962 50.000 17.69 1.06 33.28 3.32
8201 10536 1.133025 CTTTCTTATGCCAGCCGGTTG 59.867 52.381 11.98 11.98 33.28 3.77
8202 10537 1.004277 TCTTTCTTATGCCAGCCGGTT 59.996 47.619 1.90 0.00 33.28 4.44
8203 10538 0.618458 TCTTTCTTATGCCAGCCGGT 59.382 50.000 1.90 0.00 33.28 5.28
8204 10539 1.972872 ATCTTTCTTATGCCAGCCGG 58.027 50.000 0.00 0.00 0.00 6.13
8205 10540 3.070018 CCTATCTTTCTTATGCCAGCCG 58.930 50.000 0.00 0.00 0.00 5.52
8206 10541 4.040952 TCTCCTATCTTTCTTATGCCAGCC 59.959 45.833 0.00 0.00 0.00 4.85
8207 10542 5.220710 TCTCCTATCTTTCTTATGCCAGC 57.779 43.478 0.00 0.00 0.00 4.85
8208 10543 6.825610 AGTTCTCCTATCTTTCTTATGCCAG 58.174 40.000 0.00 0.00 0.00 4.85
8209 10544 6.814954 AGTTCTCCTATCTTTCTTATGCCA 57.185 37.500 0.00 0.00 0.00 4.92
8210 10545 9.785982 AATTAGTTCTCCTATCTTTCTTATGCC 57.214 33.333 0.00 0.00 0.00 4.40
8213 10548 9.785982 GGCAATTAGTTCTCCTATCTTTCTTAT 57.214 33.333 0.00 0.00 0.00 1.73
8214 10549 8.993424 AGGCAATTAGTTCTCCTATCTTTCTTA 58.007 33.333 0.00 0.00 0.00 2.10
8215 10550 7.866870 AGGCAATTAGTTCTCCTATCTTTCTT 58.133 34.615 0.00 0.00 0.00 2.52
8216 10551 7.444703 AGGCAATTAGTTCTCCTATCTTTCT 57.555 36.000 0.00 0.00 0.00 2.52
8217 10552 9.430623 GATAGGCAATTAGTTCTCCTATCTTTC 57.569 37.037 18.79 4.70 46.10 2.62
8222 10557 9.567702 AATAGGATAGGCAATTAGTTCTCCTAT 57.432 33.333 10.22 10.22 43.37 2.57
8223 10558 8.974292 AATAGGATAGGCAATTAGTTCTCCTA 57.026 34.615 0.00 0.00 38.22 2.94
8224 10559 7.880265 AATAGGATAGGCAATTAGTTCTCCT 57.120 36.000 0.00 0.00 36.01 3.69
8225 10560 8.594550 TGTAATAGGATAGGCAATTAGTTCTCC 58.405 37.037 0.00 0.00 0.00 3.71
8227 10562 9.950496 CATGTAATAGGATAGGCAATTAGTTCT 57.050 33.333 0.00 0.00 0.00 3.01
8228 10563 9.944376 TCATGTAATAGGATAGGCAATTAGTTC 57.056 33.333 0.00 0.00 0.00 3.01
8229 10564 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
8230 10565 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
8231 10566 7.770897 GGGTCATGTAATAGGATAGGCAATTAG 59.229 40.741 0.00 0.00 0.00 1.73
8232 10567 7.311675 GGGGTCATGTAATAGGATAGGCAATTA 60.312 40.741 0.00 0.00 0.00 1.40
8233 10568 6.485171 GGGTCATGTAATAGGATAGGCAATT 58.515 40.000 0.00 0.00 0.00 2.32
8234 10569 5.044846 GGGGTCATGTAATAGGATAGGCAAT 60.045 44.000 0.00 0.00 0.00 3.56
8235 10570 4.288626 GGGGTCATGTAATAGGATAGGCAA 59.711 45.833 0.00 0.00 0.00 4.52
8236 10571 3.844211 GGGGTCATGTAATAGGATAGGCA 59.156 47.826 0.00 0.00 0.00 4.75
8237 10572 3.844211 TGGGGTCATGTAATAGGATAGGC 59.156 47.826 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.