Multiple sequence alignment - TraesCS2A01G261100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G261100 chr2A 100.000 5405 0 0 1 5405 411127733 411122329 0.000000e+00 9982.0
1 TraesCS2A01G261100 chr2A 81.658 398 48 19 111 496 13078371 13078755 1.890000e-79 307.0
2 TraesCS2A01G261100 chr2D 95.154 4787 161 18 662 5405 320158373 320163131 0.000000e+00 7489.0
3 TraesCS2A01G261100 chr2D 80.970 268 35 11 91 348 485995077 485995338 1.190000e-46 198.0
4 TraesCS2A01G261100 chr2D 86.747 83 9 2 1473 1554 110263958 110263877 2.070000e-14 91.6
5 TraesCS2A01G261100 chr2B 94.218 4514 173 35 662 5115 388102612 388107097 0.000000e+00 6809.0
6 TraesCS2A01G261100 chr2B 89.634 164 12 5 5121 5283 388107190 388107349 2.550000e-48 204.0
7 TraesCS2A01G261100 chr2B 80.208 288 38 15 222 496 49402663 49402382 1.190000e-46 198.0
8 TraesCS2A01G261100 chr2B 80.000 285 35 17 220 496 593636442 593636712 1.990000e-44 191.0
9 TraesCS2A01G261100 chr2B 83.575 207 29 5 220 421 97488695 97488901 7.150000e-44 189.0
10 TraesCS2A01G261100 chr2B 80.220 273 35 16 6 265 205481032 205480766 2.570000e-43 187.0
11 TraesCS2A01G261100 chr2B 83.028 218 25 11 220 433 776641585 776641794 2.570000e-43 187.0
12 TraesCS2A01G261100 chr2B 79.688 192 27 9 309 493 263826016 263826202 1.580000e-25 128.0
13 TraesCS2A01G261100 chr3D 81.100 291 36 14 220 496 406399419 406399704 1.180000e-51 215.0
14 TraesCS2A01G261100 chr7B 81.919 271 29 15 5 265 202505007 202504747 1.530000e-50 211.0
15 TraesCS2A01G261100 chrUn 81.041 269 35 12 93 348 358062009 358062274 3.300000e-47 200.0
16 TraesCS2A01G261100 chrUn 80.586 273 37 13 2 264 28721723 28721989 4.270000e-46 196.0
17 TraesCS2A01G261100 chrUn 83.217 143 22 2 3769 3910 52772360 52772219 4.390000e-26 130.0
18 TraesCS2A01G261100 chrUn 83.217 143 22 2 3769 3910 258406689 258406830 4.390000e-26 130.0
19 TraesCS2A01G261100 chr1B 84.541 207 27 5 220 421 642638259 642638053 3.300000e-47 200.0
20 TraesCS2A01G261100 chr5B 80.147 272 34 14 6 264 404152640 404152904 9.240000e-43 185.0
21 TraesCS2A01G261100 chr3B 80.377 265 34 15 6 258 741636569 741636827 9.240000e-43 185.0
22 TraesCS2A01G261100 chr3B 77.076 301 44 21 232 520 712574412 712574125 3.370000e-32 150.0
23 TraesCS2A01G261100 chr4A 80.469 256 36 11 17 264 708662971 708662722 3.330000e-42 183.0
24 TraesCS2A01G261100 chr1D 87.143 70 7 2 428 496 338065992 338065924 1.610000e-10 78.7
25 TraesCS2A01G261100 chr5A 93.878 49 1 2 448 496 25875578 25875532 7.510000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G261100 chr2A 411122329 411127733 5404 True 9982.0 9982 100.000 1 5405 1 chr2A.!!$R1 5404
1 TraesCS2A01G261100 chr2D 320158373 320163131 4758 False 7489.0 7489 95.154 662 5405 1 chr2D.!!$F1 4743
2 TraesCS2A01G261100 chr2B 388102612 388107349 4737 False 3506.5 6809 91.926 662 5283 2 chr2B.!!$F5 4621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 413 0.030235 GCCTCACCGAAAACACAACC 59.970 55.000 0.0 0.0 0.0 3.77 F
426 427 0.104304 ACAACCGTGCTTCTTCTCGT 59.896 50.000 0.0 0.0 0.0 4.18 F
622 623 0.106918 AGAACCGAAAGCAACACCCA 60.107 50.000 0.0 0.0 0.0 4.51 F
2194 2255 0.252467 AGAGAAGGGGACACAGGAGG 60.252 60.000 0.0 0.0 0.0 4.30 F
3192 3253 0.389817 CAATCCACCGCAACTCTCGA 60.390 55.000 0.0 0.0 0.0 4.04 F
3932 4005 1.148867 TGGGAGCAAGGGGAATTTTCA 59.851 47.619 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 1982 0.620556 TGACCCTCTCCATTTCTGGC 59.379 55.0 0.00 0.0 42.80 4.85 R
2094 2155 1.335145 CCAAAGCATCATCCCCATCC 58.665 55.0 0.00 0.0 0.00 3.51 R
2564 2625 0.473117 TTCTGGACCCTCTTCCGGTT 60.473 55.0 0.00 0.0 42.15 4.44 R
3441 3502 0.252742 AAGTGGAGAGGTGTAGGGGG 60.253 60.0 0.00 0.0 0.00 5.40 R
4385 4458 0.662619 TCAAGCGGCACACTTTTCTG 59.337 50.0 1.45 0.0 0.00 3.02 R
5309 5486 1.318576 ACACAAGTTGGGCTGCTTAC 58.681 50.0 4.63 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.731136 GTGCCTGTCACGAAAGCA 58.269 55.556 0.00 0.00 35.76 3.91
24 25 1.279840 GTGCCTGTCACGAAAGCAC 59.720 57.895 0.00 0.00 45.99 4.40
25 26 1.153269 TGCCTGTCACGAAAGCACA 60.153 52.632 0.00 0.00 0.00 4.57
26 27 0.746204 TGCCTGTCACGAAAGCACAA 60.746 50.000 0.00 0.00 0.00 3.33
27 28 0.317020 GCCTGTCACGAAAGCACAAC 60.317 55.000 0.00 0.00 0.00 3.32
28 29 1.013596 CCTGTCACGAAAGCACAACA 58.986 50.000 0.00 0.00 0.00 3.33
29 30 1.603802 CCTGTCACGAAAGCACAACAT 59.396 47.619 0.00 0.00 0.00 2.71
30 31 2.602933 CCTGTCACGAAAGCACAACATG 60.603 50.000 0.00 0.00 0.00 3.21
40 41 3.215642 CACAACATGCCTCTCGTGA 57.784 52.632 0.00 0.00 35.66 4.35
41 42 1.511850 CACAACATGCCTCTCGTGAA 58.488 50.000 0.00 0.00 35.66 3.18
42 43 1.872952 CACAACATGCCTCTCGTGAAA 59.127 47.619 0.00 0.00 35.66 2.69
43 44 2.290367 CACAACATGCCTCTCGTGAAAA 59.710 45.455 0.00 0.00 35.66 2.29
44 45 2.948979 ACAACATGCCTCTCGTGAAAAA 59.051 40.909 0.00 0.00 35.66 1.94
62 63 1.578583 AAAAACCGTGTCTCTCGTGG 58.421 50.000 0.00 0.00 0.00 4.94
63 64 0.748450 AAAACCGTGTCTCTCGTGGA 59.252 50.000 0.00 0.00 0.00 4.02
64 65 0.748450 AAACCGTGTCTCTCGTGGAA 59.252 50.000 0.00 0.00 0.00 3.53
65 66 0.314302 AACCGTGTCTCTCGTGGAAG 59.686 55.000 0.00 0.00 0.00 3.46
66 67 1.213013 CCGTGTCTCTCGTGGAAGG 59.787 63.158 0.00 0.00 0.00 3.46
67 68 1.241990 CCGTGTCTCTCGTGGAAGGA 61.242 60.000 0.00 0.00 0.00 3.36
68 69 0.596577 CGTGTCTCTCGTGGAAGGAA 59.403 55.000 0.00 0.00 0.00 3.36
69 70 1.000607 CGTGTCTCTCGTGGAAGGAAA 60.001 52.381 0.00 0.00 0.00 3.13
70 71 2.545113 CGTGTCTCTCGTGGAAGGAAAA 60.545 50.000 0.00 0.00 0.00 2.29
71 72 2.801111 GTGTCTCTCGTGGAAGGAAAAC 59.199 50.000 0.00 0.00 0.00 2.43
72 73 2.432874 TGTCTCTCGTGGAAGGAAAACA 59.567 45.455 0.00 0.00 0.00 2.83
73 74 3.118555 TGTCTCTCGTGGAAGGAAAACAA 60.119 43.478 0.00 0.00 0.00 2.83
74 75 4.065789 GTCTCTCGTGGAAGGAAAACAAT 58.934 43.478 0.00 0.00 0.00 2.71
75 76 5.221561 TGTCTCTCGTGGAAGGAAAACAATA 60.222 40.000 0.00 0.00 0.00 1.90
76 77 5.699458 GTCTCTCGTGGAAGGAAAACAATAA 59.301 40.000 0.00 0.00 0.00 1.40
77 78 6.371825 GTCTCTCGTGGAAGGAAAACAATAAT 59.628 38.462 0.00 0.00 0.00 1.28
78 79 7.548075 GTCTCTCGTGGAAGGAAAACAATAATA 59.452 37.037 0.00 0.00 0.00 0.98
79 80 8.098286 TCTCTCGTGGAAGGAAAACAATAATAA 58.902 33.333 0.00 0.00 0.00 1.40
80 81 8.624367 TCTCGTGGAAGGAAAACAATAATAAA 57.376 30.769 0.00 0.00 0.00 1.40
81 82 8.726988 TCTCGTGGAAGGAAAACAATAATAAAG 58.273 33.333 0.00 0.00 0.00 1.85
82 83 8.624367 TCGTGGAAGGAAAACAATAATAAAGA 57.376 30.769 0.00 0.00 0.00 2.52
83 84 9.069082 TCGTGGAAGGAAAACAATAATAAAGAA 57.931 29.630 0.00 0.00 0.00 2.52
84 85 9.685828 CGTGGAAGGAAAACAATAATAAAGAAA 57.314 29.630 0.00 0.00 0.00 2.52
114 115 2.697431 TTCATTTTCGAAAGGCACGG 57.303 45.000 10.98 0.00 0.00 4.94
115 116 1.600023 TCATTTTCGAAAGGCACGGT 58.400 45.000 10.98 0.00 0.00 4.83
116 117 1.533731 TCATTTTCGAAAGGCACGGTC 59.466 47.619 10.98 0.00 0.00 4.79
117 118 0.515564 ATTTTCGAAAGGCACGGTCG 59.484 50.000 10.98 0.00 40.03 4.79
118 119 0.810823 TTTTCGAAAGGCACGGTCGT 60.811 50.000 10.98 0.00 39.74 4.34
127 128 4.039357 CACGGTCGTGCCTCTCGT 62.039 66.667 10.59 0.00 39.39 4.18
128 129 4.039357 ACGGTCGTGCCTCTCGTG 62.039 66.667 0.00 0.00 32.60 4.35
129 130 3.733960 CGGTCGTGCCTCTCGTGA 61.734 66.667 0.00 0.00 34.25 4.35
130 131 2.649034 GGTCGTGCCTCTCGTGAA 59.351 61.111 0.00 0.00 0.00 3.18
131 132 1.006571 GGTCGTGCCTCTCGTGAAA 60.007 57.895 0.00 0.00 0.00 2.69
132 133 1.009389 GGTCGTGCCTCTCGTGAAAG 61.009 60.000 0.00 0.00 0.00 2.62
133 134 1.372997 TCGTGCCTCTCGTGAAAGC 60.373 57.895 2.99 2.99 0.00 3.51
134 135 1.664649 CGTGCCTCTCGTGAAAGCA 60.665 57.895 7.54 7.54 31.63 3.91
135 136 1.862806 GTGCCTCTCGTGAAAGCAC 59.137 57.895 19.97 19.97 41.83 4.40
136 137 0.880278 GTGCCTCTCGTGAAAGCACA 60.880 55.000 25.50 4.65 44.89 4.57
137 138 0.179059 TGCCTCTCGTGAAAGCACAA 60.179 50.000 7.54 0.00 45.41 3.33
138 139 1.160137 GCCTCTCGTGAAAGCACAAT 58.840 50.000 0.00 0.00 45.41 2.71
139 140 1.129437 GCCTCTCGTGAAAGCACAATC 59.871 52.381 0.00 0.00 45.41 2.67
140 141 1.391485 CCTCTCGTGAAAGCACAATCG 59.609 52.381 0.00 0.00 45.41 3.34
141 142 2.061773 CTCTCGTGAAAGCACAATCGT 58.938 47.619 0.00 0.00 45.41 3.73
142 143 1.792367 TCTCGTGAAAGCACAATCGTG 59.208 47.619 0.00 0.00 45.41 4.35
150 151 4.961622 CACAATCGTGCATCTCGC 57.038 55.556 0.00 0.00 42.89 5.03
173 174 1.153958 GCAAAACCATGCCTCTCGC 60.154 57.895 0.00 0.00 40.49 5.03
174 175 1.135315 CAAAACCATGCCTCTCGCG 59.865 57.895 0.00 0.00 42.08 5.87
175 176 1.003839 AAAACCATGCCTCTCGCGA 60.004 52.632 9.26 9.26 42.08 5.87
176 177 0.605319 AAAACCATGCCTCTCGCGAA 60.605 50.000 11.33 0.00 42.08 4.70
177 178 0.605319 AAACCATGCCTCTCGCGAAA 60.605 50.000 11.33 0.00 42.08 3.46
178 179 1.021390 AACCATGCCTCTCGCGAAAG 61.021 55.000 11.33 6.30 42.08 2.62
179 180 2.176273 CCATGCCTCTCGCGAAAGG 61.176 63.158 24.38 24.38 42.08 3.11
180 181 1.153568 CATGCCTCTCGCGAAAGGA 60.154 57.895 32.19 16.88 42.08 3.36
181 182 0.740868 CATGCCTCTCGCGAAAGGAA 60.741 55.000 32.19 23.47 42.08 3.36
182 183 0.036388 ATGCCTCTCGCGAAAGGAAA 60.036 50.000 32.19 18.88 42.08 3.13
183 184 0.670546 TGCCTCTCGCGAAAGGAAAG 60.671 55.000 32.19 7.88 42.08 2.62
184 185 0.389948 GCCTCTCGCGAAAGGAAAGA 60.390 55.000 32.19 12.16 34.35 2.52
185 186 1.939838 GCCTCTCGCGAAAGGAAAGAA 60.940 52.381 32.19 0.00 34.35 2.52
186 187 2.413837 CCTCTCGCGAAAGGAAAGAAA 58.586 47.619 24.42 0.00 34.35 2.52
187 188 2.806244 CCTCTCGCGAAAGGAAAGAAAA 59.194 45.455 24.42 0.00 34.35 2.29
188 189 3.364068 CCTCTCGCGAAAGGAAAGAAAAC 60.364 47.826 24.42 0.00 34.35 2.43
189 190 3.199677 TCTCGCGAAAGGAAAGAAAACA 58.800 40.909 11.33 0.00 0.00 2.83
190 191 3.247648 TCTCGCGAAAGGAAAGAAAACAG 59.752 43.478 11.33 0.00 0.00 3.16
191 192 3.199677 TCGCGAAAGGAAAGAAAACAGA 58.800 40.909 6.20 0.00 0.00 3.41
192 193 3.623960 TCGCGAAAGGAAAGAAAACAGAA 59.376 39.130 6.20 0.00 0.00 3.02
193 194 4.095185 TCGCGAAAGGAAAGAAAACAGAAA 59.905 37.500 6.20 0.00 0.00 2.52
194 195 4.796312 CGCGAAAGGAAAGAAAACAGAAAA 59.204 37.500 0.00 0.00 0.00 2.29
195 196 5.275741 CGCGAAAGGAAAGAAAACAGAAAAC 60.276 40.000 0.00 0.00 0.00 2.43
196 197 5.575218 GCGAAAGGAAAGAAAACAGAAAACA 59.425 36.000 0.00 0.00 0.00 2.83
197 198 6.453791 GCGAAAGGAAAGAAAACAGAAAACAC 60.454 38.462 0.00 0.00 0.00 3.32
198 199 6.584563 CGAAAGGAAAGAAAACAGAAAACACA 59.415 34.615 0.00 0.00 0.00 3.72
199 200 7.275560 CGAAAGGAAAGAAAACAGAAAACACAT 59.724 33.333 0.00 0.00 0.00 3.21
200 201 8.846943 AAAGGAAAGAAAACAGAAAACACATT 57.153 26.923 0.00 0.00 0.00 2.71
201 202 7.832503 AGGAAAGAAAACAGAAAACACATTG 57.167 32.000 0.00 0.00 0.00 2.82
202 203 7.386059 AGGAAAGAAAACAGAAAACACATTGT 58.614 30.769 0.00 0.00 0.00 2.71
203 204 7.877612 AGGAAAGAAAACAGAAAACACATTGTT 59.122 29.630 0.00 0.00 43.41 2.83
217 218 7.749539 AACACATTGTTTCGTTTTCTAAAGG 57.250 32.000 0.00 0.00 37.26 3.11
218 219 6.270064 ACACATTGTTTCGTTTTCTAAAGGG 58.730 36.000 0.00 0.00 0.00 3.95
219 220 5.174943 CACATTGTTTCGTTTTCTAAAGGGC 59.825 40.000 0.00 0.00 0.00 5.19
220 221 3.612472 TGTTTCGTTTTCTAAAGGGCG 57.388 42.857 0.00 0.00 0.00 6.13
221 222 2.944349 TGTTTCGTTTTCTAAAGGGCGT 59.056 40.909 0.00 0.00 0.00 5.68
222 223 3.242804 TGTTTCGTTTTCTAAAGGGCGTG 60.243 43.478 0.00 0.00 0.00 5.34
223 224 0.869730 TCGTTTTCTAAAGGGCGTGC 59.130 50.000 0.00 0.00 0.00 5.34
224 225 0.109919 CGTTTTCTAAAGGGCGTGCC 60.110 55.000 1.16 1.16 0.00 5.01
225 226 1.244816 GTTTTCTAAAGGGCGTGCCT 58.755 50.000 11.25 0.00 36.10 4.75
226 227 1.199327 GTTTTCTAAAGGGCGTGCCTC 59.801 52.381 11.25 0.97 36.10 4.70
227 228 0.690762 TTTCTAAAGGGCGTGCCTCT 59.309 50.000 11.25 3.47 36.10 3.69
228 229 0.249398 TTCTAAAGGGCGTGCCTCTC 59.751 55.000 11.25 0.00 36.10 3.20
229 230 1.519455 CTAAAGGGCGTGCCTCTCG 60.519 63.158 11.25 0.00 36.10 4.04
238 239 2.743060 TGCCTCTCGCAGAAGCAA 59.257 55.556 6.89 0.00 44.64 3.91
239 240 1.071299 TGCCTCTCGCAGAAGCAAA 59.929 52.632 6.89 0.00 44.64 3.68
240 241 0.534877 TGCCTCTCGCAGAAGCAAAA 60.535 50.000 6.89 0.00 44.64 2.44
241 242 0.110010 GCCTCTCGCAGAAGCAAAAC 60.110 55.000 2.95 0.00 42.27 2.43
242 243 0.519077 CCTCTCGCAGAAGCAAAACC 59.481 55.000 0.00 0.00 42.27 3.27
243 244 0.164647 CTCTCGCAGAAGCAAAACCG 59.835 55.000 0.00 0.00 42.27 4.44
244 245 0.531974 TCTCGCAGAAGCAAAACCGT 60.532 50.000 0.00 0.00 42.27 4.83
245 246 0.384725 CTCGCAGAAGCAAAACCGTG 60.385 55.000 0.00 0.00 42.27 4.94
246 247 2.010817 CGCAGAAGCAAAACCGTGC 61.011 57.895 0.00 0.00 45.28 5.34
247 248 1.661509 GCAGAAGCAAAACCGTGCC 60.662 57.895 0.00 0.00 46.14 5.01
248 249 2.032981 CAGAAGCAAAACCGTGCCT 58.967 52.632 0.00 0.00 46.14 4.75
249 250 0.040067 CAGAAGCAAAACCGTGCCTC 60.040 55.000 0.00 0.00 46.14 4.70
250 251 0.179018 AGAAGCAAAACCGTGCCTCT 60.179 50.000 0.00 0.00 46.14 3.69
251 252 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
252 253 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
253 254 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
260 261 4.261888 GTGCCTCTCGCGAAAGAA 57.738 55.556 11.91 0.00 42.08 2.52
261 262 2.528797 GTGCCTCTCGCGAAAGAAA 58.471 52.632 11.91 0.00 42.08 2.52
262 263 0.865769 GTGCCTCTCGCGAAAGAAAA 59.134 50.000 11.91 0.00 42.08 2.29
263 264 1.263217 GTGCCTCTCGCGAAAGAAAAA 59.737 47.619 11.91 0.00 42.08 1.94
301 302 4.488126 TTTTTCATTTCTGAGAGGCACG 57.512 40.909 0.00 0.00 31.68 5.34
302 303 2.099141 TTCATTTCTGAGAGGCACGG 57.901 50.000 0.00 0.00 31.68 4.94
303 304 0.976641 TCATTTCTGAGAGGCACGGT 59.023 50.000 0.00 0.00 0.00 4.83
304 305 1.066858 TCATTTCTGAGAGGCACGGTC 60.067 52.381 0.00 0.00 0.00 4.79
305 306 0.976641 ATTTCTGAGAGGCACGGTCA 59.023 50.000 0.00 0.00 0.00 4.02
306 307 0.976641 TTTCTGAGAGGCACGGTCAT 59.023 50.000 0.00 0.00 0.00 3.06
307 308 0.247460 TTCTGAGAGGCACGGTCATG 59.753 55.000 0.00 0.00 0.00 3.07
308 309 1.812922 CTGAGAGGCACGGTCATGC 60.813 63.158 0.00 0.00 45.34 4.06
309 310 2.236223 CTGAGAGGCACGGTCATGCT 62.236 60.000 0.00 0.00 45.38 3.79
310 311 1.520342 GAGAGGCACGGTCATGCTC 60.520 63.158 0.00 0.00 45.38 4.26
311 312 1.954362 GAGAGGCACGGTCATGCTCT 61.954 60.000 0.00 0.00 45.38 4.09
312 313 1.520342 GAGGCACGGTCATGCTCTC 60.520 63.158 0.00 0.00 45.38 3.20
313 314 2.230994 GAGGCACGGTCATGCTCTCA 62.231 60.000 9.79 0.00 45.38 3.27
314 315 2.103042 GGCACGGTCATGCTCTCAC 61.103 63.158 0.00 0.00 45.38 3.51
315 316 2.447887 GCACGGTCATGCTCTCACG 61.448 63.158 0.00 0.00 42.62 4.35
316 317 1.212751 CACGGTCATGCTCTCACGA 59.787 57.895 0.00 0.00 0.00 4.35
317 318 0.388520 CACGGTCATGCTCTCACGAA 60.389 55.000 0.00 0.00 0.00 3.85
318 319 0.317160 ACGGTCATGCTCTCACGAAA 59.683 50.000 0.00 0.00 0.00 3.46
319 320 0.994995 CGGTCATGCTCTCACGAAAG 59.005 55.000 0.00 0.00 0.00 2.62
320 321 0.723981 GGTCATGCTCTCACGAAAGC 59.276 55.000 0.00 0.00 39.02 3.51
325 326 2.755836 TGCTCTCACGAAAGCAAAAC 57.244 45.000 0.00 0.00 45.09 2.43
326 327 1.333619 TGCTCTCACGAAAGCAAAACC 59.666 47.619 0.00 0.00 45.09 3.27
327 328 1.660333 GCTCTCACGAAAGCAAAACCG 60.660 52.381 0.00 0.00 38.42 4.44
328 329 1.597663 CTCTCACGAAAGCAAAACCGT 59.402 47.619 0.00 0.00 35.46 4.83
330 331 2.203599 CACGAAAGCAAAACCGTGC 58.796 52.632 0.00 0.00 44.24 5.34
331 332 1.065109 ACGAAAGCAAAACCGTGCC 59.935 52.632 0.00 0.00 46.14 5.01
332 333 1.358759 CGAAAGCAAAACCGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
333 334 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
334 335 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
335 336 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
336 337 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
337 338 2.251642 GCAAAACCGTGCCTCTCGT 61.252 57.895 0.00 0.00 38.66 4.18
338 339 1.569493 CAAAACCGTGCCTCTCGTG 59.431 57.895 0.00 0.00 0.00 4.35
339 340 0.878523 CAAAACCGTGCCTCTCGTGA 60.879 55.000 0.00 0.00 0.00 4.35
340 341 0.179067 AAAACCGTGCCTCTCGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
341 342 0.179067 AAACCGTGCCTCTCGTGAAA 60.179 50.000 0.00 0.00 0.00 2.69
342 343 0.600255 AACCGTGCCTCTCGTGAAAG 60.600 55.000 0.00 0.00 0.00 2.62
343 344 1.289066 CCGTGCCTCTCGTGAAAGA 59.711 57.895 0.00 0.00 0.00 2.52
344 345 0.319555 CCGTGCCTCTCGTGAAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
345 346 1.497991 CGTGCCTCTCGTGAAAGAAA 58.502 50.000 0.00 0.00 0.00 2.52
346 347 1.864711 CGTGCCTCTCGTGAAAGAAAA 59.135 47.619 0.00 0.00 0.00 2.29
347 348 2.286833 CGTGCCTCTCGTGAAAGAAAAA 59.713 45.455 0.00 0.00 0.00 1.94
404 405 2.282180 GGCCTTGCCTCACCGAAA 60.282 61.111 0.00 0.00 46.69 3.46
405 406 1.901464 GGCCTTGCCTCACCGAAAA 60.901 57.895 0.00 0.00 46.69 2.29
406 407 1.285950 GCCTTGCCTCACCGAAAAC 59.714 57.895 0.00 0.00 0.00 2.43
407 408 1.452145 GCCTTGCCTCACCGAAAACA 61.452 55.000 0.00 0.00 0.00 2.83
408 409 0.310854 CCTTGCCTCACCGAAAACAC 59.689 55.000 0.00 0.00 0.00 3.32
409 410 1.021202 CTTGCCTCACCGAAAACACA 58.979 50.000 0.00 0.00 0.00 3.72
410 411 1.403679 CTTGCCTCACCGAAAACACAA 59.596 47.619 0.00 0.00 0.00 3.33
411 412 0.736053 TGCCTCACCGAAAACACAAC 59.264 50.000 0.00 0.00 0.00 3.32
412 413 0.030235 GCCTCACCGAAAACACAACC 59.970 55.000 0.00 0.00 0.00 3.77
413 414 0.306533 CCTCACCGAAAACACAACCG 59.693 55.000 0.00 0.00 0.00 4.44
414 415 1.011333 CTCACCGAAAACACAACCGT 58.989 50.000 0.00 0.00 0.00 4.83
425 426 0.508641 CACAACCGTGCTTCTTCTCG 59.491 55.000 0.00 0.00 36.06 4.04
426 427 0.104304 ACAACCGTGCTTCTTCTCGT 59.896 50.000 0.00 0.00 0.00 4.18
427 428 1.338973 ACAACCGTGCTTCTTCTCGTA 59.661 47.619 0.00 0.00 0.00 3.43
428 429 2.223876 ACAACCGTGCTTCTTCTCGTAA 60.224 45.455 0.00 0.00 0.00 3.18
429 430 2.798283 CAACCGTGCTTCTTCTCGTAAA 59.202 45.455 0.00 0.00 0.00 2.01
430 431 3.102052 ACCGTGCTTCTTCTCGTAAAA 57.898 42.857 0.00 0.00 0.00 1.52
431 432 3.460103 ACCGTGCTTCTTCTCGTAAAAA 58.540 40.909 0.00 0.00 0.00 1.94
470 471 3.963383 TTTTCTGTTTTCGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
471 472 1.497991 TTCTGTTTTCGAGAGGCACG 58.502 50.000 0.00 0.00 0.00 5.34
472 473 0.319555 TCTGTTTTCGAGAGGCACGG 60.320 55.000 0.00 0.00 0.00 4.94
473 474 0.600255 CTGTTTTCGAGAGGCACGGT 60.600 55.000 0.00 0.00 0.00 4.83
474 475 0.179067 TGTTTTCGAGAGGCACGGTT 60.179 50.000 0.00 0.00 0.00 4.44
475 476 0.234884 GTTTTCGAGAGGCACGGTTG 59.765 55.000 0.00 0.00 0.00 3.77
476 477 0.179067 TTTTCGAGAGGCACGGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
485 486 3.414700 CACGGTTGTGCCTCTCGC 61.415 66.667 0.00 0.00 39.67 5.03
495 496 3.568093 GCCTCTCGCAAAAGCAAAA 57.432 47.368 0.00 0.00 37.47 2.44
496 497 1.412387 GCCTCTCGCAAAAGCAAAAG 58.588 50.000 0.00 0.00 37.47 2.27
497 498 1.932156 GCCTCTCGCAAAAGCAAAAGG 60.932 52.381 0.00 0.00 37.47 3.11
498 499 1.608590 CCTCTCGCAAAAGCAAAAGGA 59.391 47.619 0.00 0.00 0.00 3.36
499 500 2.034558 CCTCTCGCAAAAGCAAAAGGAA 59.965 45.455 0.00 0.00 0.00 3.36
500 501 3.490761 CCTCTCGCAAAAGCAAAAGGAAA 60.491 43.478 0.00 0.00 0.00 3.13
501 502 4.111916 CTCTCGCAAAAGCAAAAGGAAAA 58.888 39.130 0.00 0.00 0.00 2.29
502 503 4.499183 TCTCGCAAAAGCAAAAGGAAAAA 58.501 34.783 0.00 0.00 0.00 1.94
540 541 7.504924 TTTTCCAAAAGCTAAGAAAGATCGA 57.495 32.000 0.00 0.00 30.49 3.59
541 542 7.687941 TTTCCAAAAGCTAAGAAAGATCGAT 57.312 32.000 0.00 0.00 0.00 3.59
542 543 6.668541 TCCAAAAGCTAAGAAAGATCGATG 57.331 37.500 0.54 0.00 0.00 3.84
543 544 6.406370 TCCAAAAGCTAAGAAAGATCGATGA 58.594 36.000 0.54 0.00 0.00 2.92
544 545 6.878923 TCCAAAAGCTAAGAAAGATCGATGAA 59.121 34.615 0.54 0.00 0.00 2.57
545 546 7.390440 TCCAAAAGCTAAGAAAGATCGATGAAA 59.610 33.333 0.54 0.00 0.00 2.69
546 547 8.023128 CCAAAAGCTAAGAAAGATCGATGAAAA 58.977 33.333 0.54 0.00 0.00 2.29
547 548 9.398170 CAAAAGCTAAGAAAGATCGATGAAAAA 57.602 29.630 0.54 0.00 0.00 1.94
548 549 8.956617 AAAGCTAAGAAAGATCGATGAAAAAC 57.043 30.769 0.54 0.00 0.00 2.43
549 550 7.913674 AGCTAAGAAAGATCGATGAAAAACT 57.086 32.000 0.54 0.00 0.00 2.66
550 551 9.436957 AAGCTAAGAAAGATCGATGAAAAACTA 57.563 29.630 0.54 0.00 0.00 2.24
551 552 9.436957 AGCTAAGAAAGATCGATGAAAAACTAA 57.563 29.630 0.54 0.00 0.00 2.24
590 591 6.339194 ACTTTAAAAACCGAAAACATGTGC 57.661 33.333 0.00 0.00 0.00 4.57
591 592 5.004916 ACTTTAAAAACCGAAAACATGTGCG 59.995 36.000 0.00 3.97 0.00 5.34
592 593 2.853731 AAAACCGAAAACATGTGCGA 57.146 40.000 15.06 0.00 0.00 5.10
593 594 2.853731 AAACCGAAAACATGTGCGAA 57.146 40.000 15.06 0.00 0.00 4.70
594 595 2.853731 AACCGAAAACATGTGCGAAA 57.146 40.000 15.06 0.00 0.00 3.46
595 596 2.853731 ACCGAAAACATGTGCGAAAA 57.146 40.000 15.06 0.00 0.00 2.29
596 597 3.152261 ACCGAAAACATGTGCGAAAAA 57.848 38.095 15.06 0.00 0.00 1.94
618 619 7.835634 AAAAATAAAAGAACCGAAAGCAACA 57.164 28.000 0.00 0.00 0.00 3.33
619 620 6.822073 AAATAAAAGAACCGAAAGCAACAC 57.178 33.333 0.00 0.00 0.00 3.32
620 621 2.863401 AAAGAACCGAAAGCAACACC 57.137 45.000 0.00 0.00 0.00 4.16
621 622 1.029681 AAGAACCGAAAGCAACACCC 58.970 50.000 0.00 0.00 0.00 4.61
622 623 0.106918 AGAACCGAAAGCAACACCCA 60.107 50.000 0.00 0.00 0.00 4.51
623 624 0.310854 GAACCGAAAGCAACACCCAG 59.689 55.000 0.00 0.00 0.00 4.45
624 625 0.106918 AACCGAAAGCAACACCCAGA 60.107 50.000 0.00 0.00 0.00 3.86
625 626 0.535102 ACCGAAAGCAACACCCAGAG 60.535 55.000 0.00 0.00 0.00 3.35
626 627 1.576421 CGAAAGCAACACCCAGAGC 59.424 57.895 0.00 0.00 0.00 4.09
627 628 1.576421 GAAAGCAACACCCAGAGCG 59.424 57.895 0.00 0.00 0.00 5.03
628 629 2.463675 GAAAGCAACACCCAGAGCGC 62.464 60.000 0.00 0.00 0.00 5.92
631 632 3.414700 CAACACCCAGAGCGCGAC 61.415 66.667 12.10 2.22 0.00 5.19
632 633 3.923864 AACACCCAGAGCGCGACA 61.924 61.111 12.10 0.00 0.00 4.35
633 634 4.664677 ACACCCAGAGCGCGACAC 62.665 66.667 12.10 0.00 0.00 3.67
675 676 2.906389 AGTGATCACAGGCCAAACTCTA 59.094 45.455 27.02 0.00 0.00 2.43
785 786 1.864711 CTCGTACGGCCCAATGTAATG 59.135 52.381 16.52 0.00 0.00 1.90
1187 1221 2.377628 GATCCCGCCGATGCAGGTAA 62.378 60.000 0.00 0.00 36.37 2.85
1205 1239 3.925090 GCACCTACGCCCGGCTAT 61.925 66.667 8.05 0.00 0.00 2.97
1239 1274 1.206578 GGTGAAATGCGTGTGTCCG 59.793 57.895 0.00 0.00 0.00 4.79
1565 1620 5.241949 GTGTTCTAGGAGACTCTGAAGTTCA 59.758 44.000 5.25 5.25 43.67 3.18
1583 1638 8.028938 TGAAGTTCACAAGAAAAGAAAAAGGAG 58.971 33.333 0.08 0.00 35.08 3.69
1770 1825 0.253044 TTGCAGAGCAGGATGTACCC 59.747 55.000 0.00 0.00 40.61 3.69
1815 1873 4.157840 GGGAAACGGAATAAGAACAAGCAT 59.842 41.667 0.00 0.00 0.00 3.79
1845 1903 0.253044 TTCCTGCTGTAGTGGATGCC 59.747 55.000 0.00 0.00 0.00 4.40
1855 1913 2.755064 TGGATGCCGCCATTGTGG 60.755 61.111 0.00 0.00 45.43 4.17
1871 1929 6.158598 CCATTGTGGTTGGTAAATCTGAAAG 58.841 40.000 0.00 0.00 31.35 2.62
1878 1936 5.452777 GTTGGTAAATCTGAAAGTGACAGC 58.547 41.667 0.00 0.00 35.61 4.40
1893 1951 1.136329 ACAGCACAGATGGGAAGGGT 61.136 55.000 0.00 0.00 0.00 4.34
1894 1952 0.911769 CAGCACAGATGGGAAGGGTA 59.088 55.000 0.00 0.00 0.00 3.69
1903 1961 1.893315 TGGGAAGGGTATTCCAGGAG 58.107 55.000 8.78 0.00 40.32 3.69
1906 1964 2.092375 GGGAAGGGTATTCCAGGAGTTG 60.092 54.545 8.78 0.00 40.32 3.16
1919 1977 6.313519 TCCAGGAGTTGCTGAAATTAGTAT 57.686 37.500 1.90 0.00 0.00 2.12
1924 1982 6.820656 AGGAGTTGCTGAAATTAGTATGAGTG 59.179 38.462 0.00 0.00 0.00 3.51
1990 2051 1.190643 GGAGACACTGGAGAGGAAGG 58.809 60.000 0.00 0.00 0.00 3.46
2025 2086 7.344095 CAGGAAATGGAAGAAGAATAAGCAT 57.656 36.000 0.00 0.00 0.00 3.79
2094 2155 2.988493 CAAATCTGGAAATGTTGGCACG 59.012 45.455 0.00 0.00 0.00 5.34
2194 2255 0.252467 AGAGAAGGGGACACAGGAGG 60.252 60.000 0.00 0.00 0.00 4.30
2229 2290 5.372547 AGCCCAAGAAACGAAAGAATAAC 57.627 39.130 0.00 0.00 0.00 1.89
2362 2423 1.146982 GCCCTAGAGATGGAGAGGACT 59.853 57.143 0.00 0.00 0.00 3.85
2367 2428 4.959210 CCTAGAGATGGAGAGGACTCAAAA 59.041 45.833 1.75 0.00 44.22 2.44
2383 2444 4.841246 ACTCAAAATGTCCTGGAGTAGACT 59.159 41.667 0.00 0.00 37.08 3.24
2386 2447 7.016268 ACTCAAAATGTCCTGGAGTAGACTTTA 59.984 37.037 0.00 0.00 37.08 1.85
2427 2488 7.592903 CCAAAGTTGAAGAAGAATAAGCTCAAC 59.407 37.037 4.92 4.92 37.18 3.18
2543 2604 0.747283 GAAGCTGCATCCAGAGGTGG 60.747 60.000 1.02 0.00 46.63 4.61
2550 2611 1.340405 GCATCCAGAGGTGGTGATGTT 60.340 52.381 0.00 0.00 45.28 2.71
2564 2625 3.194116 GGTGATGTTACTACGAGTCCCAA 59.806 47.826 0.00 0.00 0.00 4.12
2568 2629 2.030007 TGTTACTACGAGTCCCAAACCG 60.030 50.000 0.00 0.00 0.00 4.44
2570 2631 0.540365 ACTACGAGTCCCAAACCGGA 60.540 55.000 9.46 0.00 36.56 5.14
2594 2655 1.005924 GGGTCCAGAATGTCCCAATGT 59.994 52.381 0.00 0.00 44.30 2.71
2617 2678 6.488344 TGTAAACATAACTGAGCATTTGGTGA 59.512 34.615 0.00 0.00 0.00 4.02
2705 2766 4.387598 CAAGATCAATCCCCTTCTGCTAG 58.612 47.826 0.00 0.00 0.00 3.42
2720 2781 0.390472 GCTAGACCAGACACCAGTGC 60.390 60.000 0.00 0.00 0.00 4.40
2895 2956 4.471904 TGAGAATAACGGCAACTCTCAT 57.528 40.909 0.00 0.00 38.04 2.90
2918 2979 1.641577 CCTAAGCGGAAGAAACGGAG 58.358 55.000 0.00 0.00 33.16 4.63
2991 3052 3.668447 TGTCAGCTCAGATGAAAGGAAC 58.332 45.455 0.00 0.00 0.00 3.62
3003 3064 4.594123 TGAAAGGAACGATGTGTGTAGA 57.406 40.909 0.00 0.00 0.00 2.59
3042 3103 5.601313 GGTTACAGGAAGTATGGGATACTCA 59.399 44.000 0.00 0.00 44.94 3.41
3192 3253 0.389817 CAATCCACCGCAACTCTCGA 60.390 55.000 0.00 0.00 0.00 4.04
3288 3349 6.494835 AGCACTTTCCTTTTGGTATCAATCTT 59.505 34.615 0.00 0.00 41.38 2.40
3325 3386 8.768019 TCTATCTCATCAAAATGCTAATGTTCG 58.232 33.333 0.00 0.00 32.58 3.95
3326 3387 6.983474 TCTCATCAAAATGCTAATGTTCGA 57.017 33.333 0.00 0.00 32.58 3.71
3327 3388 7.558161 TCTCATCAAAATGCTAATGTTCGAT 57.442 32.000 0.00 0.00 32.58 3.59
3328 3389 7.412063 TCTCATCAAAATGCTAATGTTCGATG 58.588 34.615 0.00 0.00 32.58 3.84
3329 3390 7.280652 TCTCATCAAAATGCTAATGTTCGATGA 59.719 33.333 0.00 0.00 32.53 2.92
3330 3391 7.933396 TCATCAAAATGCTAATGTTCGATGAT 58.067 30.769 0.00 0.00 30.66 2.45
3441 3502 7.253486 CGTCGAGAATGAAGTACTGATTCTTTC 60.253 40.741 22.42 16.94 36.73 2.62
3455 3516 2.249309 TCTTTCCCCCTACACCTCTC 57.751 55.000 0.00 0.00 0.00 3.20
3618 3679 6.864342 TGTGTACTTGCTACTTCTAATCTCC 58.136 40.000 0.00 0.00 0.00 3.71
3623 3684 1.964933 GCTACTTCTAATCTCCGGCCT 59.035 52.381 0.00 0.00 0.00 5.19
3668 3729 7.118723 TCCACTTGGAGTATAATTGCAAGAAT 58.881 34.615 19.80 3.36 43.96 2.40
3670 3731 7.148018 CCACTTGGAGTATAATTGCAAGAATGT 60.148 37.037 19.80 0.00 43.96 2.71
3718 3781 7.542130 GTCCAGGAATGTGTTAAAATGTCATTC 59.458 37.037 0.00 0.00 41.71 2.67
3764 3837 6.098409 ACTGTTTCTCTTTCTGGAGTTACTCA 59.902 38.462 14.72 0.00 35.11 3.41
3768 3841 6.582677 TCTCTTTCTGGAGTTACTCAGAAG 57.417 41.667 14.72 11.10 33.18 2.85
3773 3846 5.516059 TCTGGAGTTACTCAGAAGTCCTA 57.484 43.478 14.72 0.00 45.65 2.94
3781 3854 7.044798 AGTTACTCAGAAGTCCTAATGCATTC 58.955 38.462 16.86 0.94 36.92 2.67
3832 3905 2.104111 ACTGCACTGCTACCAAGTGTAA 59.896 45.455 1.98 0.00 36.09 2.41
3842 3915 6.631016 TGCTACCAAGTGTAATACTCTTGAG 58.369 40.000 27.10 20.37 46.73 3.02
3864 3937 7.118723 TGAGAATCAATGCAAACCCTTAGTAT 58.881 34.615 0.00 0.00 45.97 2.12
3932 4005 1.148867 TGGGAGCAAGGGGAATTTTCA 59.851 47.619 0.00 0.00 0.00 2.69
4010 4083 1.205893 CTGAGTTGTACCCTCTGCTCC 59.794 57.143 10.09 0.00 0.00 4.70
4172 4245 8.455903 TGGGTCAGATTCATCATTTTAAGATC 57.544 34.615 0.00 0.00 0.00 2.75
4175 4248 7.041508 GGTCAGATTCATCATTTTAAGATCGCT 60.042 37.037 0.00 0.00 0.00 4.93
4221 4294 6.587206 TCATTAATGCTGAATGTTGTTCCA 57.413 33.333 10.76 0.00 36.02 3.53
4385 4458 0.389166 CGTGACAGACTGGAGAAGCC 60.389 60.000 7.51 0.00 37.10 4.35
4407 4480 1.266718 GAAAAGTGTGCCGCTTGATGA 59.733 47.619 2.37 0.00 34.24 2.92
4419 4492 1.674962 GCTTGATGATCCTGTGCCTTC 59.325 52.381 0.00 0.00 0.00 3.46
4428 4501 4.100035 TGATCCTGTGCCTTCATACAGTAG 59.900 45.833 0.00 0.00 42.04 2.57
4457 4530 3.305516 GGCCAGGCTTGTGTTGGG 61.306 66.667 12.43 0.00 32.53 4.12
4592 4668 5.293560 GGTCTGTGATTATCCTGAAGTAGC 58.706 45.833 0.00 0.00 0.00 3.58
4617 4693 2.347731 GCTAGGTAGTGTTCACAAGGC 58.652 52.381 5.74 0.00 0.00 4.35
4641 4717 6.211515 CCGTACCTATTACTTCACATGTACC 58.788 44.000 0.00 0.00 0.00 3.34
4704 4782 3.496870 CCCTGTATCAAGGATAACAGGGC 60.497 52.174 22.61 3.25 45.31 5.19
4846 4925 9.871238 CATTTGTTGAACTATAGTACTGTACCT 57.129 33.333 14.05 5.27 0.00 3.08
4914 4993 5.537188 TGCAAATGGAATTGGTTGTTCTAC 58.463 37.500 0.00 0.00 36.10 2.59
4976 5055 4.358851 TGTCTTGCTGTGTTTTGTTATGC 58.641 39.130 0.00 0.00 0.00 3.14
5050 5129 3.851105 GCTTGCGAATGCTGTCATATTCC 60.851 47.826 0.00 0.00 43.34 3.01
5073 5154 6.374053 TCCGAGCATTTTCTTTGTCAATATGA 59.626 34.615 0.00 0.00 0.00 2.15
5173 5346 1.781786 AGTGCGTATCCTGACCTGAT 58.218 50.000 0.00 0.00 0.00 2.90
5241 5418 1.806542 TCGTGGATGAAAGCAAAGCTC 59.193 47.619 0.00 0.00 38.25 4.09
5242 5419 1.135575 CGTGGATGAAAGCAAAGCTCC 60.136 52.381 0.00 0.00 38.25 4.70
5284 5461 1.202915 ACACTGTTGTGATGATGGCCA 60.203 47.619 8.56 8.56 46.55 5.36
5305 5482 4.988540 CCAAAATCTCGTCACTCAAGTGTA 59.011 41.667 9.82 0.00 45.76 2.90
5309 5486 4.224715 TCTCGTCACTCAAGTGTAAGTG 57.775 45.455 9.82 0.00 45.76 3.16
5385 5562 3.018856 ACTGCATATTCACACACATGGG 58.981 45.455 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.279840 GTGCTTTCGTGACAGGCAC 59.720 57.895 0.00 0.00 44.53 5.01
7 8 0.746204 TTGTGCTTTCGTGACAGGCA 60.746 50.000 0.00 0.00 0.00 4.75
8 9 0.317020 GTTGTGCTTTCGTGACAGGC 60.317 55.000 0.00 0.00 0.00 4.85
9 10 1.013596 TGTTGTGCTTTCGTGACAGG 58.986 50.000 0.00 0.00 0.00 4.00
10 11 2.642995 CATGTTGTGCTTTCGTGACAG 58.357 47.619 0.00 0.00 0.00 3.51
11 12 2.753989 CATGTTGTGCTTTCGTGACA 57.246 45.000 0.00 0.00 0.00 3.58
22 23 1.511850 TTCACGAGAGGCATGTTGTG 58.488 50.000 9.50 9.50 35.79 3.33
23 24 2.254546 TTTCACGAGAGGCATGTTGT 57.745 45.000 0.00 0.00 0.00 3.32
24 25 3.624326 TTTTTCACGAGAGGCATGTTG 57.376 42.857 0.00 0.00 0.00 3.33
43 44 1.137479 TCCACGAGAGACACGGTTTTT 59.863 47.619 0.00 0.00 34.93 1.94
44 45 0.748450 TCCACGAGAGACACGGTTTT 59.252 50.000 0.00 0.00 34.93 2.43
45 46 0.748450 TTCCACGAGAGACACGGTTT 59.252 50.000 0.00 0.00 34.93 3.27
46 47 0.314302 CTTCCACGAGAGACACGGTT 59.686 55.000 0.00 0.00 34.93 4.44
47 48 1.524863 CCTTCCACGAGAGACACGGT 61.525 60.000 0.00 0.00 34.93 4.83
48 49 1.213013 CCTTCCACGAGAGACACGG 59.787 63.158 0.00 0.00 34.93 4.94
49 50 0.596577 TTCCTTCCACGAGAGACACG 59.403 55.000 0.00 0.00 0.00 4.49
50 51 2.801111 GTTTTCCTTCCACGAGAGACAC 59.199 50.000 0.00 0.00 0.00 3.67
51 52 2.432874 TGTTTTCCTTCCACGAGAGACA 59.567 45.455 0.00 0.00 0.00 3.41
52 53 3.107642 TGTTTTCCTTCCACGAGAGAC 57.892 47.619 0.00 0.00 0.00 3.36
53 54 3.830744 TTGTTTTCCTTCCACGAGAGA 57.169 42.857 0.00 0.00 0.00 3.10
54 55 6.743575 ATTATTGTTTTCCTTCCACGAGAG 57.256 37.500 0.00 0.00 0.00 3.20
55 56 8.624367 TTTATTATTGTTTTCCTTCCACGAGA 57.376 30.769 0.00 0.00 0.00 4.04
56 57 8.726988 TCTTTATTATTGTTTTCCTTCCACGAG 58.273 33.333 0.00 0.00 0.00 4.18
57 58 8.624367 TCTTTATTATTGTTTTCCTTCCACGA 57.376 30.769 0.00 0.00 0.00 4.35
58 59 9.685828 TTTCTTTATTATTGTTTTCCTTCCACG 57.314 29.630 0.00 0.00 0.00 4.94
92 93 3.799420 CCGTGCCTTTCGAAAATGAAAAA 59.201 39.130 12.41 0.00 37.40 1.94
93 94 3.181485 ACCGTGCCTTTCGAAAATGAAAA 60.181 39.130 12.41 0.00 37.40 2.29
94 95 2.359531 ACCGTGCCTTTCGAAAATGAAA 59.640 40.909 12.41 0.00 36.48 2.69
95 96 1.950909 ACCGTGCCTTTCGAAAATGAA 59.049 42.857 12.41 0.00 0.00 2.57
96 97 1.533731 GACCGTGCCTTTCGAAAATGA 59.466 47.619 12.41 0.00 0.00 2.57
97 98 1.724654 CGACCGTGCCTTTCGAAAATG 60.725 52.381 12.41 7.33 34.62 2.32
98 99 0.515564 CGACCGTGCCTTTCGAAAAT 59.484 50.000 12.41 0.00 34.62 1.82
99 100 0.810823 ACGACCGTGCCTTTCGAAAA 60.811 50.000 12.41 0.00 36.58 2.29
100 101 1.227321 ACGACCGTGCCTTTCGAAA 60.227 52.632 10.71 10.71 36.58 3.46
101 102 1.952133 CACGACCGTGCCTTTCGAA 60.952 57.895 9.69 0.00 39.39 3.71
102 103 2.355363 CACGACCGTGCCTTTCGA 60.355 61.111 9.69 0.00 39.39 3.71
110 111 4.039357 ACGAGAGGCACGACCGTG 62.039 66.667 17.19 17.19 46.52 4.94
111 112 4.039357 CACGAGAGGCACGACCGT 62.039 66.667 0.00 0.00 46.52 4.83
112 113 2.742710 TTTCACGAGAGGCACGACCG 62.743 60.000 0.00 0.00 46.52 4.79
113 114 1.006571 TTTCACGAGAGGCACGACC 60.007 57.895 0.00 0.00 39.61 4.79
114 115 1.618640 GCTTTCACGAGAGGCACGAC 61.619 60.000 0.00 0.00 34.70 4.34
115 116 1.372997 GCTTTCACGAGAGGCACGA 60.373 57.895 0.00 0.00 34.70 4.35
116 117 1.664649 TGCTTTCACGAGAGGCACG 60.665 57.895 8.05 0.00 32.29 5.34
117 118 0.880278 TGTGCTTTCACGAGAGGCAC 60.880 55.000 24.26 24.26 46.01 5.01
118 119 0.179059 TTGTGCTTTCACGAGAGGCA 60.179 50.000 8.05 8.05 46.01 4.75
119 120 1.129437 GATTGTGCTTTCACGAGAGGC 59.871 52.381 0.00 0.00 46.01 4.70
120 121 1.391485 CGATTGTGCTTTCACGAGAGG 59.609 52.381 0.00 0.00 46.01 3.69
121 122 2.061773 ACGATTGTGCTTTCACGAGAG 58.938 47.619 0.00 0.00 46.01 3.20
122 123 1.792367 CACGATTGTGCTTTCACGAGA 59.208 47.619 0.00 0.00 46.01 4.04
123 124 2.217353 CACGATTGTGCTTTCACGAG 57.783 50.000 0.00 0.00 46.01 4.18
133 134 1.413008 TCGCGAGATGCACGATTGTG 61.413 55.000 3.71 8.88 46.97 3.33
134 135 0.735978 TTCGCGAGATGCACGATTGT 60.736 50.000 9.59 0.00 46.97 2.71
135 136 0.369931 TTTCGCGAGATGCACGATTG 59.630 50.000 9.59 0.00 46.97 2.67
136 137 0.647410 CTTTCGCGAGATGCACGATT 59.353 50.000 9.59 0.00 46.97 3.34
137 138 1.756375 GCTTTCGCGAGATGCACGAT 61.756 55.000 19.83 0.00 46.97 3.73
138 139 2.444624 GCTTTCGCGAGATGCACGA 61.445 57.895 19.83 0.00 46.97 4.35
139 140 2.020559 GCTTTCGCGAGATGCACG 59.979 61.111 19.83 2.48 46.97 5.34
140 141 0.110238 TTTGCTTTCGCGAGATGCAC 60.110 50.000 24.67 8.86 45.05 4.57
141 142 0.590682 TTTTGCTTTCGCGAGATGCA 59.409 45.000 22.30 22.30 46.97 3.96
142 143 0.977674 GTTTTGCTTTCGCGAGATGC 59.022 50.000 9.59 15.34 41.60 3.91
143 144 1.069296 TGGTTTTGCTTTCGCGAGATG 60.069 47.619 9.59 4.76 41.60 2.90
144 145 1.234821 TGGTTTTGCTTTCGCGAGAT 58.765 45.000 9.59 0.00 41.60 2.75
145 146 1.069296 CATGGTTTTGCTTTCGCGAGA 60.069 47.619 9.59 3.35 39.65 4.04
146 147 1.330306 CATGGTTTTGCTTTCGCGAG 58.670 50.000 9.59 0.00 39.65 5.03
147 148 0.662970 GCATGGTTTTGCTTTCGCGA 60.663 50.000 3.71 3.71 39.57 5.87
148 149 1.616872 GGCATGGTTTTGCTTTCGCG 61.617 55.000 0.00 0.00 42.38 5.87
149 150 0.319813 AGGCATGGTTTTGCTTTCGC 60.320 50.000 0.00 0.00 42.38 4.70
150 151 1.270550 AGAGGCATGGTTTTGCTTTCG 59.729 47.619 0.00 0.00 42.38 3.46
151 152 2.669391 CGAGAGGCATGGTTTTGCTTTC 60.669 50.000 0.00 0.00 42.38 2.62
152 153 1.270550 CGAGAGGCATGGTTTTGCTTT 59.729 47.619 0.00 0.00 42.38 3.51
153 154 0.883833 CGAGAGGCATGGTTTTGCTT 59.116 50.000 0.00 0.00 42.38 3.91
154 155 1.589716 GCGAGAGGCATGGTTTTGCT 61.590 55.000 0.00 0.00 42.38 3.91
155 156 1.153958 GCGAGAGGCATGGTTTTGC 60.154 57.895 0.00 0.00 42.87 3.68
156 157 1.135315 CGCGAGAGGCATGGTTTTG 59.865 57.895 0.00 0.00 43.84 2.44
157 158 0.605319 TTCGCGAGAGGCATGGTTTT 60.605 50.000 9.59 0.00 43.84 2.43
158 159 0.605319 TTTCGCGAGAGGCATGGTTT 60.605 50.000 9.59 0.00 43.84 3.27
159 160 1.003839 TTTCGCGAGAGGCATGGTT 60.004 52.632 9.59 0.00 43.84 3.67
160 161 1.448540 CTTTCGCGAGAGGCATGGT 60.449 57.895 18.35 0.00 43.84 3.55
161 162 2.176273 CCTTTCGCGAGAGGCATGG 61.176 63.158 30.06 13.30 43.84 3.66
162 163 0.740868 TTCCTTTCGCGAGAGGCATG 60.741 55.000 34.45 15.91 43.84 4.06
163 164 0.036388 TTTCCTTTCGCGAGAGGCAT 60.036 50.000 34.45 0.00 43.84 4.40
164 165 0.670546 CTTTCCTTTCGCGAGAGGCA 60.671 55.000 34.45 25.17 43.84 4.75
165 166 0.389948 TCTTTCCTTTCGCGAGAGGC 60.390 55.000 34.45 0.00 43.69 4.70
166 167 2.080286 TTCTTTCCTTTCGCGAGAGG 57.920 50.000 33.75 33.75 43.69 3.69
167 168 3.247648 TGTTTTCTTTCCTTTCGCGAGAG 59.752 43.478 19.09 19.09 43.69 3.20
168 169 3.199677 TGTTTTCTTTCCTTTCGCGAGA 58.800 40.909 9.59 3.35 39.20 4.04
169 170 3.247648 TCTGTTTTCTTTCCTTTCGCGAG 59.752 43.478 9.59 0.00 0.00 5.03
170 171 3.199677 TCTGTTTTCTTTCCTTTCGCGA 58.800 40.909 3.71 3.71 0.00 5.87
171 172 3.602390 TCTGTTTTCTTTCCTTTCGCG 57.398 42.857 0.00 0.00 0.00 5.87
172 173 5.575218 TGTTTTCTGTTTTCTTTCCTTTCGC 59.425 36.000 0.00 0.00 0.00 4.70
173 174 6.584563 TGTGTTTTCTGTTTTCTTTCCTTTCG 59.415 34.615 0.00 0.00 0.00 3.46
174 175 7.883229 TGTGTTTTCTGTTTTCTTTCCTTTC 57.117 32.000 0.00 0.00 0.00 2.62
175 176 8.720562 CAATGTGTTTTCTGTTTTCTTTCCTTT 58.279 29.630 0.00 0.00 0.00 3.11
176 177 7.877612 ACAATGTGTTTTCTGTTTTCTTTCCTT 59.122 29.630 0.00 0.00 0.00 3.36
177 178 7.386059 ACAATGTGTTTTCTGTTTTCTTTCCT 58.614 30.769 0.00 0.00 0.00 3.36
178 179 7.595311 ACAATGTGTTTTCTGTTTTCTTTCC 57.405 32.000 0.00 0.00 0.00 3.13
193 194 6.754675 CCCTTTAGAAAACGAAACAATGTGTT 59.245 34.615 0.00 0.00 43.41 3.32
194 195 6.270064 CCCTTTAGAAAACGAAACAATGTGT 58.730 36.000 0.00 0.00 0.00 3.72
195 196 5.174943 GCCCTTTAGAAAACGAAACAATGTG 59.825 40.000 0.00 0.00 0.00 3.21
196 197 5.286438 GCCCTTTAGAAAACGAAACAATGT 58.714 37.500 0.00 0.00 0.00 2.71
197 198 4.381566 CGCCCTTTAGAAAACGAAACAATG 59.618 41.667 0.00 0.00 0.00 2.82
198 199 4.037089 ACGCCCTTTAGAAAACGAAACAAT 59.963 37.500 0.00 0.00 0.00 2.71
199 200 3.377798 ACGCCCTTTAGAAAACGAAACAA 59.622 39.130 0.00 0.00 0.00 2.83
200 201 2.944349 ACGCCCTTTAGAAAACGAAACA 59.056 40.909 0.00 0.00 0.00 2.83
201 202 3.294102 CACGCCCTTTAGAAAACGAAAC 58.706 45.455 0.00 0.00 0.00 2.78
202 203 2.287129 GCACGCCCTTTAGAAAACGAAA 60.287 45.455 0.00 0.00 0.00 3.46
203 204 1.264826 GCACGCCCTTTAGAAAACGAA 59.735 47.619 0.00 0.00 0.00 3.85
204 205 0.869730 GCACGCCCTTTAGAAAACGA 59.130 50.000 0.00 0.00 0.00 3.85
205 206 0.109919 GGCACGCCCTTTAGAAAACG 60.110 55.000 0.00 0.00 0.00 3.60
206 207 1.199327 GAGGCACGCCCTTTAGAAAAC 59.801 52.381 3.95 0.00 46.60 2.43
207 208 1.073284 AGAGGCACGCCCTTTAGAAAA 59.927 47.619 3.95 0.00 46.60 2.29
208 209 0.690762 AGAGGCACGCCCTTTAGAAA 59.309 50.000 3.95 0.00 46.60 2.52
209 210 0.249398 GAGAGGCACGCCCTTTAGAA 59.751 55.000 3.95 0.00 46.60 2.10
210 211 1.898154 GAGAGGCACGCCCTTTAGA 59.102 57.895 3.95 0.00 46.60 2.10
211 212 1.519455 CGAGAGGCACGCCCTTTAG 60.519 63.158 3.95 0.00 46.60 1.85
212 213 2.577059 CGAGAGGCACGCCCTTTA 59.423 61.111 3.95 0.00 46.60 1.85
222 223 0.110010 GTTTTGCTTCTGCGAGAGGC 60.110 55.000 11.53 11.53 46.21 4.70
223 224 0.519077 GGTTTTGCTTCTGCGAGAGG 59.481 55.000 0.00 0.00 43.34 3.69
224 225 0.164647 CGGTTTTGCTTCTGCGAGAG 59.835 55.000 0.00 0.00 43.34 3.20
225 226 0.531974 ACGGTTTTGCTTCTGCGAGA 60.532 50.000 0.00 0.00 43.34 4.04
226 227 0.384725 CACGGTTTTGCTTCTGCGAG 60.385 55.000 0.00 0.00 43.34 5.03
227 228 1.646540 CACGGTTTTGCTTCTGCGA 59.353 52.632 0.00 0.00 43.34 5.10
228 229 2.010817 GCACGGTTTTGCTTCTGCG 61.011 57.895 0.00 0.00 43.34 5.18
229 230 1.661509 GGCACGGTTTTGCTTCTGC 60.662 57.895 0.00 0.00 42.56 4.26
230 231 0.040067 GAGGCACGGTTTTGCTTCTG 60.040 55.000 1.28 0.00 43.46 3.02
231 232 2.331265 GAGGCACGGTTTTGCTTCT 58.669 52.632 1.28 0.00 43.46 2.85
232 233 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
233 234 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
234 235 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
235 236 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
236 237 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
237 238 2.981977 TTCGCGAGAGGCACGGTTTT 62.982 55.000 9.59 0.00 43.84 2.43
238 239 2.981977 TTTCGCGAGAGGCACGGTTT 62.982 55.000 9.59 0.00 43.84 3.27
239 240 3.509137 TTTCGCGAGAGGCACGGTT 62.509 57.895 9.59 0.00 43.84 4.44
240 241 3.916392 CTTTCGCGAGAGGCACGGT 62.916 63.158 18.35 0.00 43.84 4.83
241 242 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
242 243 1.282248 TTTCTTTCGCGAGAGGCACG 61.282 55.000 24.53 1.69 43.84 5.34
243 244 0.865769 TTTTCTTTCGCGAGAGGCAC 59.134 50.000 24.53 0.00 43.84 5.01
244 245 1.588674 TTTTTCTTTCGCGAGAGGCA 58.411 45.000 24.53 10.58 43.84 4.75
280 281 3.253188 CCGTGCCTCTCAGAAATGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
281 282 2.813754 CCGTGCCTCTCAGAAATGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
282 283 2.224523 ACCGTGCCTCTCAGAAATGAAA 60.225 45.455 0.00 0.00 0.00 2.69
283 284 1.347707 ACCGTGCCTCTCAGAAATGAA 59.652 47.619 0.00 0.00 0.00 2.57
284 285 0.976641 ACCGTGCCTCTCAGAAATGA 59.023 50.000 0.00 0.00 0.00 2.57
285 286 1.338105 TGACCGTGCCTCTCAGAAATG 60.338 52.381 0.00 0.00 0.00 2.32
286 287 0.976641 TGACCGTGCCTCTCAGAAAT 59.023 50.000 0.00 0.00 0.00 2.17
287 288 0.976641 ATGACCGTGCCTCTCAGAAA 59.023 50.000 0.00 0.00 0.00 2.52
288 289 0.247460 CATGACCGTGCCTCTCAGAA 59.753 55.000 0.00 0.00 0.00 3.02
289 290 1.893062 CATGACCGTGCCTCTCAGA 59.107 57.895 0.00 0.00 0.00 3.27
290 291 1.812922 GCATGACCGTGCCTCTCAG 60.813 63.158 0.00 0.00 39.18 3.35
291 292 2.230994 GAGCATGACCGTGCCTCTCA 62.231 60.000 10.30 0.00 46.19 3.27
292 293 1.520342 GAGCATGACCGTGCCTCTC 60.520 63.158 10.30 0.00 46.19 3.20
293 294 1.954362 GAGAGCATGACCGTGCCTCT 61.954 60.000 17.57 15.19 46.19 3.69
294 295 1.520342 GAGAGCATGACCGTGCCTC 60.520 63.158 10.30 11.97 46.19 4.70
295 296 2.285773 TGAGAGCATGACCGTGCCT 61.286 57.895 10.30 7.55 46.19 4.75
296 297 2.103042 GTGAGAGCATGACCGTGCC 61.103 63.158 10.30 3.23 46.19 5.01
297 298 2.447887 CGTGAGAGCATGACCGTGC 61.448 63.158 6.11 6.11 45.38 5.34
298 299 0.388520 TTCGTGAGAGCATGACCGTG 60.389 55.000 0.00 0.00 43.69 4.94
299 300 0.317160 TTTCGTGAGAGCATGACCGT 59.683 50.000 0.00 0.00 43.69 4.83
300 301 0.994995 CTTTCGTGAGAGCATGACCG 59.005 55.000 0.00 0.00 43.69 4.79
301 302 0.723981 GCTTTCGTGAGAGCATGACC 59.276 55.000 7.45 0.00 43.69 4.02
302 303 1.432514 TGCTTTCGTGAGAGCATGAC 58.567 50.000 10.67 0.00 43.46 3.06
303 304 3.912899 TGCTTTCGTGAGAGCATGA 57.087 47.368 10.67 0.00 43.46 3.07
306 307 1.333619 GGTTTTGCTTTCGTGAGAGCA 59.666 47.619 10.67 10.67 46.37 4.26
307 308 1.660333 CGGTTTTGCTTTCGTGAGAGC 60.660 52.381 5.51 5.51 43.69 4.09
308 309 1.597663 ACGGTTTTGCTTTCGTGAGAG 59.402 47.619 0.00 0.00 43.69 3.20
309 310 1.658994 ACGGTTTTGCTTTCGTGAGA 58.341 45.000 0.00 0.00 34.40 3.27
313 314 1.065109 GGCACGGTTTTGCTTTCGT 59.935 52.632 0.00 0.00 42.56 3.85
314 315 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
315 316 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
316 317 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
317 318 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
318 319 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
319 320 2.251642 ACGAGAGGCACGGTTTTGC 61.252 57.895 0.00 0.00 42.18 3.68
320 321 0.878523 TCACGAGAGGCACGGTTTTG 60.879 55.000 0.00 0.00 34.93 2.44
321 322 0.179067 TTCACGAGAGGCACGGTTTT 60.179 50.000 0.00 0.00 34.93 2.43
322 323 0.179067 TTTCACGAGAGGCACGGTTT 60.179 50.000 0.00 0.00 34.93 3.27
323 324 0.600255 CTTTCACGAGAGGCACGGTT 60.600 55.000 0.00 0.00 34.93 4.44
324 325 1.006102 CTTTCACGAGAGGCACGGT 60.006 57.895 0.00 0.00 34.93 4.83
325 326 0.319555 TTCTTTCACGAGAGGCACGG 60.320 55.000 0.00 0.00 34.93 4.94
326 327 1.497991 TTTCTTTCACGAGAGGCACG 58.502 50.000 0.00 0.00 0.00 5.34
327 328 3.963383 TTTTTCTTTCACGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
365 366 2.556622 GTGCCTCTCGGAAATGGAAAAA 59.443 45.455 0.00 0.00 0.00 1.94
366 367 2.159382 GTGCCTCTCGGAAATGGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
367 368 1.821216 GTGCCTCTCGGAAATGGAAA 58.179 50.000 0.00 0.00 0.00 3.13
368 369 0.391130 CGTGCCTCTCGGAAATGGAA 60.391 55.000 0.00 0.00 0.00 3.53
369 370 1.218047 CGTGCCTCTCGGAAATGGA 59.782 57.895 0.00 0.00 0.00 3.41
370 371 3.799753 CGTGCCTCTCGGAAATGG 58.200 61.111 0.00 0.00 0.00 3.16
388 389 1.285950 GTTTTCGGTGAGGCAAGGC 59.714 57.895 0.00 0.00 0.00 4.35
389 390 0.310854 GTGTTTTCGGTGAGGCAAGG 59.689 55.000 0.00 0.00 0.00 3.61
390 391 1.021202 TGTGTTTTCGGTGAGGCAAG 58.979 50.000 0.00 0.00 0.00 4.01
391 392 1.133407 GTTGTGTTTTCGGTGAGGCAA 59.867 47.619 0.00 0.00 0.00 4.52
392 393 0.736053 GTTGTGTTTTCGGTGAGGCA 59.264 50.000 0.00 0.00 0.00 4.75
393 394 0.030235 GGTTGTGTTTTCGGTGAGGC 59.970 55.000 0.00 0.00 0.00 4.70
394 395 0.306533 CGGTTGTGTTTTCGGTGAGG 59.693 55.000 0.00 0.00 0.00 3.86
395 396 1.011333 ACGGTTGTGTTTTCGGTGAG 58.989 50.000 0.00 0.00 0.00 3.51
396 397 0.727970 CACGGTTGTGTTTTCGGTGA 59.272 50.000 0.00 0.00 41.34 4.02
397 398 3.228085 CACGGTTGTGTTTTCGGTG 57.772 52.632 0.00 0.00 41.34 4.94
398 399 2.551507 AAGCACGGTTGTGTTTTCGGT 61.552 47.619 0.00 0.00 45.79 4.69
399 400 0.099791 AAGCACGGTTGTGTTTTCGG 59.900 50.000 0.00 0.00 45.79 4.30
400 401 3.615099 AAGCACGGTTGTGTTTTCG 57.385 47.368 0.00 0.00 45.79 3.46
407 408 0.104304 ACGAGAAGAAGCACGGTTGT 59.896 50.000 0.00 0.00 0.00 3.32
408 409 2.060326 TACGAGAAGAAGCACGGTTG 57.940 50.000 0.00 0.00 0.00 3.77
409 410 2.806608 TTACGAGAAGAAGCACGGTT 57.193 45.000 0.00 0.00 0.00 4.44
410 411 2.806608 TTTACGAGAAGAAGCACGGT 57.193 45.000 0.00 0.00 0.00 4.83
449 450 3.242608 CGTGCCTCTCGAAAACAGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
450 451 2.286833 CGTGCCTCTCGAAAACAGAAAA 59.713 45.455 0.00 0.00 0.00 2.29
451 452 1.864711 CGTGCCTCTCGAAAACAGAAA 59.135 47.619 0.00 0.00 0.00 2.52
452 453 1.497991 CGTGCCTCTCGAAAACAGAA 58.502 50.000 0.00 0.00 0.00 3.02
453 454 0.319555 CCGTGCCTCTCGAAAACAGA 60.320 55.000 0.00 0.00 0.00 3.41
454 455 0.600255 ACCGTGCCTCTCGAAAACAG 60.600 55.000 0.00 0.00 0.00 3.16
455 456 0.179067 AACCGTGCCTCTCGAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
456 457 0.234884 CAACCGTGCCTCTCGAAAAC 59.765 55.000 0.00 0.00 0.00 2.43
457 458 0.179067 ACAACCGTGCCTCTCGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
458 459 0.878523 CACAACCGTGCCTCTCGAAA 60.879 55.000 0.00 0.00 36.06 3.46
459 460 1.300620 CACAACCGTGCCTCTCGAA 60.301 57.895 0.00 0.00 36.06 3.71
460 461 2.338620 CACAACCGTGCCTCTCGA 59.661 61.111 0.00 0.00 36.06 4.04
468 469 3.414700 GCGAGAGGCACAACCGTG 61.415 66.667 0.00 0.00 46.52 4.94
515 516 7.936584 TCGATCTTTCTTAGCTTTTGGAAAAA 58.063 30.769 0.00 0.00 0.00 1.94
516 517 7.504924 TCGATCTTTCTTAGCTTTTGGAAAA 57.495 32.000 0.00 0.00 0.00 2.29
517 518 7.390440 TCATCGATCTTTCTTAGCTTTTGGAAA 59.610 33.333 0.00 0.00 0.00 3.13
518 519 6.878923 TCATCGATCTTTCTTAGCTTTTGGAA 59.121 34.615 0.00 0.00 0.00 3.53
519 520 6.406370 TCATCGATCTTTCTTAGCTTTTGGA 58.594 36.000 0.00 0.00 0.00 3.53
520 521 6.668541 TCATCGATCTTTCTTAGCTTTTGG 57.331 37.500 0.00 0.00 0.00 3.28
521 522 8.955061 TTTTCATCGATCTTTCTTAGCTTTTG 57.045 30.769 0.00 0.00 0.00 2.44
522 523 9.399403 GTTTTTCATCGATCTTTCTTAGCTTTT 57.601 29.630 0.00 0.00 0.00 2.27
523 524 8.787852 AGTTTTTCATCGATCTTTCTTAGCTTT 58.212 29.630 0.00 0.00 0.00 3.51
524 525 8.329203 AGTTTTTCATCGATCTTTCTTAGCTT 57.671 30.769 0.00 0.00 0.00 3.74
525 526 7.913674 AGTTTTTCATCGATCTTTCTTAGCT 57.086 32.000 0.00 0.00 0.00 3.32
564 565 8.544597 GCACATGTTTTCGGTTTTTAAAGTATT 58.455 29.630 0.00 0.00 0.00 1.89
565 566 7.096394 CGCACATGTTTTCGGTTTTTAAAGTAT 60.096 33.333 0.00 0.00 0.00 2.12
566 567 6.196724 CGCACATGTTTTCGGTTTTTAAAGTA 59.803 34.615 0.00 0.00 0.00 2.24
567 568 5.004916 CGCACATGTTTTCGGTTTTTAAAGT 59.995 36.000 0.00 0.00 0.00 2.66
568 569 5.230306 TCGCACATGTTTTCGGTTTTTAAAG 59.770 36.000 0.00 0.00 0.00 1.85
569 570 5.100259 TCGCACATGTTTTCGGTTTTTAAA 58.900 33.333 0.00 0.00 0.00 1.52
570 571 4.669318 TCGCACATGTTTTCGGTTTTTAA 58.331 34.783 0.00 0.00 0.00 1.52
571 572 4.288670 TCGCACATGTTTTCGGTTTTTA 57.711 36.364 0.00 0.00 0.00 1.52
572 573 3.152261 TCGCACATGTTTTCGGTTTTT 57.848 38.095 0.00 0.00 0.00 1.94
573 574 2.853731 TCGCACATGTTTTCGGTTTT 57.146 40.000 0.00 0.00 0.00 2.43
574 575 2.853731 TTCGCACATGTTTTCGGTTT 57.146 40.000 0.00 0.00 0.00 3.27
575 576 2.853731 TTTCGCACATGTTTTCGGTT 57.146 40.000 0.00 0.00 0.00 4.44
576 577 2.853731 TTTTCGCACATGTTTTCGGT 57.146 40.000 0.00 0.00 0.00 4.69
594 595 7.201574 GGTGTTGCTTTCGGTTCTTTTATTTTT 60.202 33.333 0.00 0.00 0.00 1.94
595 596 6.256975 GGTGTTGCTTTCGGTTCTTTTATTTT 59.743 34.615 0.00 0.00 0.00 1.82
596 597 5.751509 GGTGTTGCTTTCGGTTCTTTTATTT 59.248 36.000 0.00 0.00 0.00 1.40
597 598 5.286438 GGTGTTGCTTTCGGTTCTTTTATT 58.714 37.500 0.00 0.00 0.00 1.40
598 599 4.261867 GGGTGTTGCTTTCGGTTCTTTTAT 60.262 41.667 0.00 0.00 0.00 1.40
599 600 3.067040 GGGTGTTGCTTTCGGTTCTTTTA 59.933 43.478 0.00 0.00 0.00 1.52
600 601 2.159156 GGGTGTTGCTTTCGGTTCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
601 602 1.407618 GGGTGTTGCTTTCGGTTCTTT 59.592 47.619 0.00 0.00 0.00 2.52
602 603 1.029681 GGGTGTTGCTTTCGGTTCTT 58.970 50.000 0.00 0.00 0.00 2.52
603 604 0.106918 TGGGTGTTGCTTTCGGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
604 605 0.310854 CTGGGTGTTGCTTTCGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
605 606 0.106918 TCTGGGTGTTGCTTTCGGTT 60.107 50.000 0.00 0.00 0.00 4.44
606 607 0.535102 CTCTGGGTGTTGCTTTCGGT 60.535 55.000 0.00 0.00 0.00 4.69
607 608 1.856265 GCTCTGGGTGTTGCTTTCGG 61.856 60.000 0.00 0.00 0.00 4.30
608 609 1.576421 GCTCTGGGTGTTGCTTTCG 59.424 57.895 0.00 0.00 0.00 3.46
609 610 1.576421 CGCTCTGGGTGTTGCTTTC 59.424 57.895 0.00 0.00 0.00 2.62
610 611 2.555547 GCGCTCTGGGTGTTGCTTT 61.556 57.895 0.00 0.00 0.00 3.51
611 612 2.980233 GCGCTCTGGGTGTTGCTT 60.980 61.111 0.00 0.00 0.00 3.91
614 615 3.414700 GTCGCGCTCTGGGTGTTG 61.415 66.667 5.56 0.00 0.00 3.33
615 616 3.923864 TGTCGCGCTCTGGGTGTT 61.924 61.111 5.56 0.00 0.00 3.32
616 617 4.664677 GTGTCGCGCTCTGGGTGT 62.665 66.667 5.56 0.00 0.00 4.16
647 648 0.671781 GCCTGTGATCACTTGCGAGT 60.672 55.000 25.55 0.00 36.25 4.18
648 649 1.364626 GGCCTGTGATCACTTGCGAG 61.365 60.000 25.55 14.22 32.14 5.03
649 650 1.375908 GGCCTGTGATCACTTGCGA 60.376 57.895 25.55 5.06 32.14 5.10
650 651 1.236616 TTGGCCTGTGATCACTTGCG 61.237 55.000 25.55 11.55 32.14 4.85
651 652 0.961019 TTTGGCCTGTGATCACTTGC 59.039 50.000 25.55 24.42 0.00 4.01
652 653 2.227388 GAGTTTGGCCTGTGATCACTTG 59.773 50.000 25.55 17.09 0.00 3.16
653 654 2.107204 AGAGTTTGGCCTGTGATCACTT 59.893 45.455 25.55 1.58 0.00 3.16
654 655 1.701847 AGAGTTTGGCCTGTGATCACT 59.298 47.619 25.55 2.72 0.00 3.41
655 656 2.191128 AGAGTTTGGCCTGTGATCAC 57.809 50.000 19.27 19.27 0.00 3.06
656 657 4.574674 AATAGAGTTTGGCCTGTGATCA 57.425 40.909 3.32 0.00 0.00 2.92
657 658 5.904362 AAAATAGAGTTTGGCCTGTGATC 57.096 39.130 3.32 0.00 0.00 2.92
744 745 5.640357 CGAGTTTGGGCTGTACTATGTTAAA 59.360 40.000 0.00 0.00 0.00 1.52
785 786 3.605664 AACACGCAAAGCCCTGCC 61.606 61.111 2.24 0.00 39.26 4.85
1155 1189 1.594833 GGGATCCAGTGCGTGTACA 59.405 57.895 15.23 0.00 0.00 2.90
1565 1620 9.462606 TCTTCTTACTCCTTTTTCTTTTCTTGT 57.537 29.630 0.00 0.00 0.00 3.16
1583 1638 3.124560 GGCTCCTGCGTAATCTTCTTAC 58.875 50.000 0.00 0.00 40.82 2.34
1632 1687 4.260620 CCGGATTTGTTTACCTCAATAGCG 60.261 45.833 0.00 0.00 0.00 4.26
1636 1691 4.918588 ACTCCGGATTTGTTTACCTCAAT 58.081 39.130 3.57 0.00 0.00 2.57
1758 1813 1.209621 TACCCTTGGGTACATCCTGC 58.790 55.000 14.13 0.00 36.25 4.85
1770 1825 3.077359 CAGCTTGGACTTCTTACCCTTG 58.923 50.000 0.00 0.00 0.00 3.61
1783 1838 1.710996 TTCCGTTTCCCCAGCTTGGA 61.711 55.000 5.14 0.88 40.96 3.53
1815 1873 1.425066 ACAGCAGGAAAGGATGGTTCA 59.575 47.619 0.00 0.00 0.00 3.18
1845 1903 2.491693 AGATTTACCAACCACAATGGCG 59.508 45.455 0.00 0.00 42.67 5.69
1855 1913 5.008613 TGCTGTCACTTTCAGATTTACCAAC 59.991 40.000 0.00 0.00 35.20 3.77
1871 1929 1.446907 CTTCCCATCTGTGCTGTCAC 58.553 55.000 0.00 0.00 43.40 3.67
1878 1936 2.509548 TGGAATACCCTTCCCATCTGTG 59.490 50.000 1.75 0.00 37.79 3.66
1893 1951 6.721318 ACTAATTTCAGCAACTCCTGGAATA 58.279 36.000 0.00 0.00 39.55 1.75
1894 1952 5.574188 ACTAATTTCAGCAACTCCTGGAAT 58.426 37.500 0.00 0.00 41.67 3.01
1903 1961 5.123820 TGGCACTCATACTAATTTCAGCAAC 59.876 40.000 0.00 0.00 0.00 4.17
1906 1964 5.118990 TCTGGCACTCATACTAATTTCAGC 58.881 41.667 0.00 0.00 0.00 4.26
1919 1977 1.280133 CCTCTCCATTTCTGGCACTCA 59.720 52.381 0.00 0.00 42.80 3.41
1924 1982 0.620556 TGACCCTCTCCATTTCTGGC 59.379 55.000 0.00 0.00 42.80 4.85
2094 2155 1.335145 CCAAAGCATCATCCCCATCC 58.665 55.000 0.00 0.00 0.00 3.51
2194 2255 2.003301 CTTGGGCTTACGCTTCTTCTC 58.997 52.381 0.00 0.00 36.09 2.87
2291 2352 5.436175 CACCATCACCATTCATACACCTAA 58.564 41.667 0.00 0.00 0.00 2.69
2295 2356 3.016031 TGCACCATCACCATTCATACAC 58.984 45.455 0.00 0.00 0.00 2.90
2362 2423 5.825593 AAGTCTACTCCAGGACATTTTGA 57.174 39.130 0.00 0.00 35.18 2.69
2367 2428 5.580998 TCTGTAAAGTCTACTCCAGGACAT 58.419 41.667 0.00 0.00 35.18 3.06
2376 2437 4.202803 ACCCCCTTCTCTGTAAAGTCTACT 60.203 45.833 0.00 0.00 0.00 2.57
2380 2441 3.197333 GGTACCCCCTTCTCTGTAAAGTC 59.803 52.174 0.00 0.00 0.00 3.01
2383 2444 3.278987 TGGTACCCCCTTCTCTGTAAA 57.721 47.619 10.07 0.00 0.00 2.01
2386 2447 1.985895 CTTTGGTACCCCCTTCTCTGT 59.014 52.381 10.07 0.00 0.00 3.41
2427 2488 5.072741 TCCTGGTTCTTCTTCTTCCATTTG 58.927 41.667 0.00 0.00 0.00 2.32
2543 2604 4.445452 TTGGGACTCGTAGTAACATCAC 57.555 45.455 0.00 0.00 0.00 3.06
2550 2611 1.176527 CCGGTTTGGGACTCGTAGTA 58.823 55.000 0.00 0.00 0.00 1.82
2564 2625 0.473117 TTCTGGACCCTCTTCCGGTT 60.473 55.000 0.00 0.00 42.15 4.44
2568 2629 1.210722 GGACATTCTGGACCCTCTTCC 59.789 57.143 0.00 0.00 36.03 3.46
2570 2631 1.290134 GGGACATTCTGGACCCTCTT 58.710 55.000 0.00 0.00 35.98 2.85
2594 2655 7.309133 CCTTCACCAAATGCTCAGTTATGTTTA 60.309 37.037 0.00 0.00 0.00 2.01
2705 2766 0.179045 AACAGCACTGGTGTCTGGTC 60.179 55.000 14.11 0.13 43.73 4.02
2720 2781 7.171337 CCTTTTCAATTTTATCCACCACAACAG 59.829 37.037 0.00 0.00 0.00 3.16
2895 2956 2.613691 CGTTTCTTCCGCTTAGGCTTA 58.386 47.619 0.00 0.00 40.77 3.09
2918 2979 2.304470 ACTTGAGCCCTCTTCTTCCTTC 59.696 50.000 0.00 0.00 0.00 3.46
2991 3052 3.508762 GGTACCTGTTCTACACACATCG 58.491 50.000 4.06 0.00 0.00 3.84
3042 3103 6.653020 TGCAGTAACCTCAGATTCACATATT 58.347 36.000 0.00 0.00 0.00 1.28
3192 3253 0.390866 CATGTGCCAAGCGAGAGTCT 60.391 55.000 0.00 0.00 0.00 3.24
3288 3349 8.962884 TTTTGATGAGATAGAAATTCCGATCA 57.037 30.769 7.84 0.80 0.00 2.92
3324 3385 8.526218 AAGACTGTTGCAATAGTATATCATCG 57.474 34.615 26.34 0.00 30.01 3.84
3325 3386 9.481340 TGAAGACTGTTGCAATAGTATATCATC 57.519 33.333 26.34 17.88 30.01 2.92
3441 3502 0.252742 AAGTGGAGAGGTGTAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
3455 3516 3.627123 TGCGGATAAATCATGTCAAGTGG 59.373 43.478 0.00 0.00 0.00 4.00
3618 3679 3.925913 CCATCAACAACAAAATTAGGCCG 59.074 43.478 0.00 0.00 0.00 6.13
3623 3684 6.549364 AGTGGAGACCATCAACAACAAAATTA 59.451 34.615 0.00 0.00 33.82 1.40
3668 3729 1.270274 GCAAATGCACATCACCTGACA 59.730 47.619 0.00 0.00 41.59 3.58
3697 3759 5.861251 TGCGAATGACATTTTAACACATTCC 59.139 36.000 1.39 0.00 41.76 3.01
3718 3781 7.290842 ACAGTCGAAAATAATATAGCAATGCG 58.709 34.615 0.00 0.00 0.00 4.73
3764 3837 5.171339 ACAGTGAATGCATTAGGACTTCT 57.829 39.130 12.97 0.89 0.00 2.85
3768 3841 6.985188 TTAGAACAGTGAATGCATTAGGAC 57.015 37.500 12.97 9.54 0.00 3.85
3773 3846 5.163581 GGCAGATTAGAACAGTGAATGCATT 60.164 40.000 12.83 12.83 32.92 3.56
3781 3854 2.237143 TCCTGGGCAGATTAGAACAGTG 59.763 50.000 0.00 0.00 0.00 3.66
3819 3892 6.864342 TCTCAAGAGTATTACACTTGGTAGC 58.136 40.000 24.50 0.00 43.75 3.58
3832 3905 6.096001 GGGTTTGCATTGATTCTCAAGAGTAT 59.904 38.462 0.00 0.00 40.05 2.12
3842 3915 7.771183 TCAATACTAAGGGTTTGCATTGATTC 58.229 34.615 0.00 0.00 0.00 2.52
3849 3922 5.249780 TCCTTCAATACTAAGGGTTTGCA 57.750 39.130 2.23 0.00 43.20 4.08
3864 3937 6.419791 TCCACAGTTTCTTTAGTTCCTTCAA 58.580 36.000 0.00 0.00 0.00 2.69
3932 4005 3.502211 CCACAAGCAAAGTATTCGAAGGT 59.498 43.478 3.35 0.00 0.00 3.50
4004 4077 4.937620 ACACATACAACACAATAGGAGCAG 59.062 41.667 0.00 0.00 0.00 4.24
4005 4078 4.905429 ACACATACAACACAATAGGAGCA 58.095 39.130 0.00 0.00 0.00 4.26
4010 4083 6.845302 AGCATCAACACATACAACACAATAG 58.155 36.000 0.00 0.00 0.00 1.73
4172 4245 6.985013 TCGACATATGTAAAACAGTAAAGCG 58.015 36.000 8.71 3.47 0.00 4.68
4190 4263 7.268199 ACATTCAGCATTAATGATTCGACAT 57.732 32.000 19.73 2.35 37.68 3.06
4221 4294 2.915869 TCTCCACCTGGTCCTGTTTAT 58.084 47.619 0.00 0.00 36.34 1.40
4385 4458 0.662619 TCAAGCGGCACACTTTTCTG 59.337 50.000 1.45 0.00 0.00 3.02
4389 4462 1.470098 GATCATCAAGCGGCACACTTT 59.530 47.619 1.45 0.00 0.00 2.66
4407 4480 3.389329 CCTACTGTATGAAGGCACAGGAT 59.611 47.826 6.83 0.00 45.22 3.24
4419 4492 3.624861 CCAAAGCTCTTGCCTACTGTATG 59.375 47.826 0.00 0.00 40.80 2.39
4428 4501 2.643232 CCTGGCCAAAGCTCTTGCC 61.643 63.158 7.01 12.16 44.27 4.52
4457 4530 3.243201 CCAGAGTCAAAACTTTCTGCCAC 60.243 47.826 0.00 0.00 35.28 5.01
4592 4668 2.301870 TGTGAACACTACCTAGCCTTGG 59.698 50.000 6.51 0.00 0.00 3.61
4617 4693 6.040166 AGGTACATGTGAAGTAATAGGTACGG 59.960 42.308 9.11 0.00 37.81 4.02
4721 4799 9.515226 ACTTGACCAACTTCTAAAAATGCTATA 57.485 29.630 0.00 0.00 0.00 1.31
4734 4812 6.708949 TCCTTACAACATACTTGACCAACTTC 59.291 38.462 0.00 0.00 0.00 3.01
4846 4925 5.185442 TCTGGCAATTATCAACAGCATTGAA 59.815 36.000 7.42 0.00 31.55 2.69
4847 4926 4.705991 TCTGGCAATTATCAACAGCATTGA 59.294 37.500 5.95 5.95 0.00 2.57
4914 4993 4.036262 TCAACAAGATTTCAAGTCCCAACG 59.964 41.667 0.00 0.00 0.00 4.10
5050 5129 7.166970 CCATCATATTGACAAAGAAAATGCTCG 59.833 37.037 0.00 0.00 0.00 5.03
5073 5154 7.176515 TCACATCTATTTACACAAAACTGCCAT 59.823 33.333 0.00 0.00 0.00 4.40
5159 5332 3.706594 TCCAAGTCATCAGGTCAGGATAC 59.293 47.826 0.00 0.00 0.00 2.24
5173 5346 2.769663 ACCCGCACTTATATCCAAGTCA 59.230 45.455 0.00 0.00 36.61 3.41
5305 5482 1.956477 CAAGTTGGGCTGCTTACACTT 59.044 47.619 0.00 0.70 0.00 3.16
5309 5486 1.318576 ACACAAGTTGGGCTGCTTAC 58.681 50.000 4.63 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.