Multiple sequence alignment - TraesCS2A01G260200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G260200 chr2A 100.000 3103 0 0 1 3103 409641762 409644864 0.000000e+00 5731
1 TraesCS2A01G260200 chr2A 93.485 307 19 1 2225 2531 628727939 628728244 3.650000e-124 455
2 TraesCS2A01G260200 chr2A 92.949 312 20 2 2223 2533 585704267 585703957 1.310000e-123 453
3 TraesCS2A01G260200 chr2A 86.364 176 20 4 2737 2908 713931607 713931432 4.080000e-44 189
4 TraesCS2A01G260200 chr2B 91.522 1439 42 15 1 1401 390116064 390114668 0.000000e+00 1908
5 TraesCS2A01G260200 chr2B 93.165 834 43 8 1394 2225 390114638 390113817 0.000000e+00 1212
6 TraesCS2A01G260200 chr2B 88.225 586 56 7 2531 3103 390113831 390113246 0.000000e+00 688
7 TraesCS2A01G260200 chr2B 90.937 331 26 4 2210 2539 24866235 24865908 2.840000e-120 442
8 TraesCS2A01G260200 chr2D 90.681 998 38 14 428 1401 321912284 321911318 0.000000e+00 1277
9 TraesCS2A01G260200 chr2D 93.029 832 48 3 1394 2225 321911288 321910467 0.000000e+00 1206
10 TraesCS2A01G260200 chr2D 90.625 576 49 5 2531 3103 321910481 321909908 0.000000e+00 760
11 TraesCS2A01G260200 chr2D 97.074 376 8 2 1 373 321912660 321912285 5.650000e-177 630
12 TraesCS2A01G260200 chr2D 88.024 167 18 2 2740 2905 520591094 520590929 2.440000e-46 196
13 TraesCS2A01G260200 chr7A 95.114 307 15 0 2224 2530 696986386 696986080 4.650000e-133 484
14 TraesCS2A01G260200 chr7A 88.479 217 18 2 1174 1390 90614440 90614649 3.970000e-64 255
15 TraesCS2A01G260200 chr7A 88.479 217 18 2 1174 1390 90664929 90664720 3.970000e-64 255
16 TraesCS2A01G260200 chr7A 88.018 217 19 2 1174 1390 90615330 90615539 1.850000e-62 250
17 TraesCS2A01G260200 chr5A 94.788 307 16 0 2225 2531 299294797 299295103 2.160000e-131 479
18 TraesCS2A01G260200 chr4A 94.444 306 17 0 2226 2531 631371413 631371718 3.620000e-129 472
19 TraesCS2A01G260200 chr6A 93.831 308 18 1 2224 2530 547740757 547740450 2.180000e-126 462
20 TraesCS2A01G260200 chr6A 93.770 305 18 1 2226 2530 422776251 422775948 1.010000e-124 457
21 TraesCS2A01G260200 chr6A 92.114 317 25 0 2222 2538 610023 609707 6.100000e-122 448
22 TraesCS2A01G260200 chr7D 78.456 557 101 16 1554 2107 89765388 89764848 2.290000e-91 346
23 TraesCS2A01G260200 chr7D 87.719 228 21 2 1163 1390 89522390 89522610 3.070000e-65 259
24 TraesCS2A01G260200 chr7D 87.719 228 21 2 1163 1390 89791323 89791103 3.070000e-65 259
25 TraesCS2A01G260200 chr4B 89.308 159 17 0 2749 2907 135218054 135218212 1.890000e-47 200
26 TraesCS2A01G260200 chr4B 87.952 166 18 2 2741 2905 344463295 344463459 8.780000e-46 195
27 TraesCS2A01G260200 chr1B 87.647 170 21 0 2739 2908 521219543 521219374 6.790000e-47 198
28 TraesCS2A01G260200 chr5B 87.952 166 19 1 2741 2905 498885981 498886146 8.780000e-46 195
29 TraesCS2A01G260200 chr6B 86.628 172 22 1 2742 2912 172714576 172714747 4.080000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G260200 chr2A 409641762 409644864 3102 False 5731.000000 5731 100.000000 1 3103 1 chr2A.!!$F1 3102
1 TraesCS2A01G260200 chr2B 390113246 390116064 2818 True 1269.333333 1908 90.970667 1 3103 3 chr2B.!!$R2 3102
2 TraesCS2A01G260200 chr2D 321909908 321912660 2752 True 968.250000 1277 92.852250 1 3103 4 chr2D.!!$R2 3102
3 TraesCS2A01G260200 chr7A 90614440 90615539 1099 False 252.500000 255 88.248500 1174 1390 2 chr7A.!!$F1 216
4 TraesCS2A01G260200 chr7D 89764848 89765388 540 True 346.000000 346 78.456000 1554 2107 1 chr7D.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 997 0.251165 GAGATCGAGGAGGGGAGGAG 60.251 65.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 2351 0.03213 AGGGTGAGTATATGCGCGTG 59.968 55.0 13.61 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 199 6.435430 TGTGATGGCTTAACATGATACAAC 57.565 37.500 0.00 0.00 0.00 3.32
273 277 3.456280 TGTGCTTTGCCAAATGAACTTC 58.544 40.909 0.00 0.00 0.00 3.01
284 288 6.838090 TGCCAAATGAACTTCATCCCATATAA 59.162 34.615 4.70 0.00 35.76 0.98
368 372 2.289010 TGTGATGCAGTGTACTGGTCTG 60.289 50.000 13.41 0.00 43.94 3.51
385 389 4.274950 TGGTCTGCTACTTAAAACTGTTGC 59.725 41.667 0.00 0.00 35.97 4.17
398 402 0.746063 CTGTTGCTGCCTTTTGTGGA 59.254 50.000 0.00 0.00 0.00 4.02
430 434 4.384056 TGCAAGGAGCTATAGAGAAATGC 58.616 43.478 3.21 8.39 45.94 3.56
508 512 2.419673 TGGAGATTTATGTGCAGTTGCG 59.580 45.455 0.00 0.00 45.83 4.85
514 518 1.295357 TATGTGCAGTTGCGGTTCGG 61.295 55.000 0.00 0.00 45.83 4.30
515 519 3.276846 GTGCAGTTGCGGTTCGGT 61.277 61.111 0.00 0.00 45.83 4.69
516 520 2.515057 TGCAGTTGCGGTTCGGTT 60.515 55.556 0.00 0.00 45.83 4.44
517 521 2.251371 GCAGTTGCGGTTCGGTTC 59.749 61.111 0.00 0.00 0.00 3.62
518 522 2.549282 CAGTTGCGGTTCGGTTCG 59.451 61.111 0.00 0.00 0.00 3.95
519 523 1.952133 CAGTTGCGGTTCGGTTCGA 60.952 57.895 0.00 0.00 0.00 3.71
520 524 1.227321 AGTTGCGGTTCGGTTCGAA 60.227 52.632 0.00 0.00 43.75 3.71
659 666 0.976641 TATTATGCGCTAGCCTGCCT 59.023 50.000 9.73 3.38 44.33 4.75
660 667 0.976641 ATTATGCGCTAGCCTGCCTA 59.023 50.000 9.73 2.36 44.33 3.93
661 668 0.318441 TTATGCGCTAGCCTGCCTAG 59.682 55.000 9.73 0.00 45.26 3.02
666 673 3.146182 CTAGCCTGCCTAGCCCTG 58.854 66.667 0.00 0.00 37.34 4.45
667 674 3.164269 TAGCCTGCCTAGCCCTGC 61.164 66.667 0.00 0.00 0.00 4.85
668 675 3.703513 TAGCCTGCCTAGCCCTGCT 62.704 63.158 0.00 0.00 43.41 4.24
693 700 4.653341 AGATATTGAGGGTGAGAGAACCTG 59.347 45.833 0.00 0.00 40.35 4.00
701 708 3.526534 GGTGAGAGAACCTGCATAGAAC 58.473 50.000 0.00 0.00 37.24 3.01
859 866 4.261867 CGTGGGCTGCTGTAACAGTATATA 60.262 45.833 0.00 0.00 39.96 0.86
860 867 5.566826 CGTGGGCTGCTGTAACAGTATATAT 60.567 44.000 0.00 0.00 39.96 0.86
871 878 9.723447 CTGTAACAGTATATATGATTAGAGCGG 57.277 37.037 0.00 0.00 0.00 5.52
872 879 9.239551 TGTAACAGTATATATGATTAGAGCGGT 57.760 33.333 0.00 0.00 0.00 5.68
975 982 1.592400 TTCGCCGTCAGTTCCGAGAT 61.592 55.000 0.00 0.00 0.00 2.75
983 990 0.665835 CAGTTCCGAGATCGAGGAGG 59.334 60.000 3.31 1.49 43.02 4.30
990 997 0.251165 GAGATCGAGGAGGGGAGGAG 60.251 65.000 0.00 0.00 0.00 3.69
1097 1104 2.689983 CAAACAAGCTCACCTTCCAACT 59.310 45.455 0.00 0.00 0.00 3.16
1101 1108 3.073062 ACAAGCTCACCTTCCAACTGTAT 59.927 43.478 0.00 0.00 0.00 2.29
1105 1141 3.118592 GCTCACCTTCCAACTGTATAGCT 60.119 47.826 0.00 0.00 0.00 3.32
1353 1398 0.524862 CGACGTACACTTACAGCCCT 59.475 55.000 0.00 0.00 0.00 5.19
1354 1399 1.731424 CGACGTACACTTACAGCCCTG 60.731 57.143 0.00 0.00 0.00 4.45
1355 1400 0.606604 ACGTACACTTACAGCCCTGG 59.393 55.000 0.00 0.00 34.19 4.45
1356 1401 0.892755 CGTACACTTACAGCCCTGGA 59.107 55.000 0.00 0.00 34.19 3.86
1357 1402 1.480954 CGTACACTTACAGCCCTGGAT 59.519 52.381 0.00 0.00 34.19 3.41
1358 1403 2.691526 CGTACACTTACAGCCCTGGATA 59.308 50.000 0.00 0.00 34.19 2.59
1359 1404 3.243434 CGTACACTTACAGCCCTGGATAG 60.243 52.174 0.00 0.00 34.19 2.08
1464 1552 2.187946 CGCCTACAAGGGGCTCAG 59.812 66.667 3.25 0.00 46.73 3.35
1540 1628 0.539051 CTCCTCTCCGCTTCACCAAT 59.461 55.000 0.00 0.00 0.00 3.16
1552 1640 2.112297 ACCAATGGCGTGGACGTT 59.888 55.556 13.49 0.00 41.65 3.99
1859 1947 4.684724 TCTACCGGGCTATCCTGATAATT 58.315 43.478 6.32 0.00 41.45 1.40
1925 2013 8.063200 TCGTGAGAAGATAGAACTCCATTTTA 57.937 34.615 0.00 0.00 37.03 1.52
1927 2015 7.976734 CGTGAGAAGATAGAACTCCATTTTAGT 59.023 37.037 0.00 0.00 0.00 2.24
1931 2019 8.816894 AGAAGATAGAACTCCATTTTAGTGTCA 58.183 33.333 0.00 0.00 0.00 3.58
1937 2025 8.367660 AGAACTCCATTTTAGTGTCAGATAGA 57.632 34.615 0.00 0.00 0.00 1.98
1938 2026 8.986991 AGAACTCCATTTTAGTGTCAGATAGAT 58.013 33.333 0.00 0.00 0.00 1.98
1960 2048 1.757118 TCTACTTGCCTTGAGGATCGG 59.243 52.381 0.06 0.00 38.61 4.18
1985 2073 4.274950 GCCGATGGAAAAATAATCGAGGAA 59.725 41.667 5.90 0.00 44.57 3.36
1991 2079 7.333528 TGGAAAAATAATCGAGGAAATGAGG 57.666 36.000 0.00 0.00 0.00 3.86
2040 2128 0.693049 AGAGGTGGTGGAATGGACAC 59.307 55.000 0.00 0.00 38.10 3.67
2081 2169 3.587797 TCCGTCGAGCTTTCTTATGTT 57.412 42.857 0.00 0.00 0.00 2.71
2085 2173 2.742053 GTCGAGCTTTCTTATGTTGCCA 59.258 45.455 0.00 0.00 0.00 4.92
2140 2228 2.892852 TGTAAAGGCTTTGCATTGAGCT 59.107 40.909 24.06 0.00 45.94 4.09
2143 2231 1.624336 AGGCTTTGCATTGAGCTTGA 58.376 45.000 14.42 0.00 45.94 3.02
2146 2234 2.182825 GCTTTGCATTGAGCTTGATCG 58.817 47.619 9.28 0.00 45.94 3.69
2172 2260 7.467557 TTTTTCAATGTCATGTTCTGCTTTC 57.532 32.000 0.00 0.00 0.00 2.62
2210 2298 8.986847 CATTTGTTCCATAAGTGCATTTTGTTA 58.013 29.630 0.00 0.00 0.00 2.41
2211 2299 8.586570 TTTGTTCCATAAGTGCATTTTGTTAG 57.413 30.769 0.00 0.00 0.00 2.34
2212 2300 7.517614 TGTTCCATAAGTGCATTTTGTTAGA 57.482 32.000 0.00 0.00 0.00 2.10
2213 2301 8.121305 TGTTCCATAAGTGCATTTTGTTAGAT 57.879 30.769 0.00 0.00 0.00 1.98
2214 2302 8.028354 TGTTCCATAAGTGCATTTTGTTAGATG 58.972 33.333 0.00 0.00 0.00 2.90
2215 2303 7.936496 TCCATAAGTGCATTTTGTTAGATGA 57.064 32.000 0.00 0.00 0.00 2.92
2218 2306 7.912250 CCATAAGTGCATTTTGTTAGATGAGTC 59.088 37.037 0.00 0.00 0.00 3.36
2220 2308 7.516198 AAGTGCATTTTGTTAGATGAGTCTT 57.484 32.000 0.00 0.00 35.87 3.01
2253 2341 7.539712 TTTTAGCATCAGTACAGACATAAGC 57.460 36.000 0.00 0.00 0.00 3.09
2254 2342 3.711086 AGCATCAGTACAGACATAAGCG 58.289 45.455 0.00 0.00 0.00 4.68
2255 2343 2.219674 GCATCAGTACAGACATAAGCGC 59.780 50.000 0.00 0.00 0.00 5.92
2256 2344 3.711086 CATCAGTACAGACATAAGCGCT 58.289 45.455 2.64 2.64 0.00 5.92
2257 2345 3.422417 TCAGTACAGACATAAGCGCTC 57.578 47.619 12.06 0.00 0.00 5.03
2258 2346 2.752903 TCAGTACAGACATAAGCGCTCA 59.247 45.455 12.06 0.00 0.00 4.26
2259 2347 3.381590 TCAGTACAGACATAAGCGCTCAT 59.618 43.478 12.06 0.00 0.00 2.90
2260 2348 4.578928 TCAGTACAGACATAAGCGCTCATA 59.421 41.667 12.06 0.00 0.00 2.15
2261 2349 5.241728 TCAGTACAGACATAAGCGCTCATAT 59.758 40.000 12.06 2.36 0.00 1.78
2262 2350 6.430000 TCAGTACAGACATAAGCGCTCATATA 59.570 38.462 12.06 0.00 0.00 0.86
2263 2351 6.524933 CAGTACAGACATAAGCGCTCATATAC 59.475 42.308 12.06 5.98 0.00 1.47
2264 2352 5.453567 ACAGACATAAGCGCTCATATACA 57.546 39.130 12.06 0.00 0.00 2.29
2265 2353 5.223382 ACAGACATAAGCGCTCATATACAC 58.777 41.667 12.06 1.26 0.00 2.90
2266 2354 4.322009 CAGACATAAGCGCTCATATACACG 59.678 45.833 12.06 0.00 0.00 4.49
2270 2358 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2271 2359 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
2272 2360 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
2273 2361 2.185262 CGCTCATATACACGCGCATAT 58.815 47.619 5.73 7.02 39.11 1.78
2274 2362 3.359654 CGCTCATATACACGCGCATATA 58.640 45.455 5.73 9.29 39.11 0.86
2275 2363 3.177838 CGCTCATATACACGCGCATATAC 59.822 47.826 5.73 0.29 39.11 1.47
2276 2364 4.352039 GCTCATATACACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
2277 2365 4.438145 GCTCATATACACGCGCATATACTC 59.562 45.833 5.73 0.00 0.00 2.59
2278 2366 5.554822 TCATATACACGCGCATATACTCA 57.445 39.130 5.73 0.00 0.00 3.41
2279 2367 5.329493 TCATATACACGCGCATATACTCAC 58.671 41.667 5.73 0.00 0.00 3.51
2280 2368 2.410785 TACACGCGCATATACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
2281 2369 0.249322 ACACGCGCATATACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
2282 2370 0.032130 CACGCGCATATACTCACCCT 59.968 55.000 5.73 0.00 0.00 4.34
2283 2371 0.750850 ACGCGCATATACTCACCCTT 59.249 50.000 5.73 0.00 0.00 3.95
2284 2372 1.958579 ACGCGCATATACTCACCCTTA 59.041 47.619 5.73 0.00 0.00 2.69
2285 2373 2.561419 ACGCGCATATACTCACCCTTAT 59.439 45.455 5.73 0.00 0.00 1.73
2286 2374 2.923655 CGCGCATATACTCACCCTTATG 59.076 50.000 8.75 0.00 0.00 1.90
2287 2375 3.366985 CGCGCATATACTCACCCTTATGA 60.367 47.826 8.75 0.00 0.00 2.15
2288 2376 4.566004 GCGCATATACTCACCCTTATGAA 58.434 43.478 0.30 0.00 0.00 2.57
2289 2377 4.389077 GCGCATATACTCACCCTTATGAAC 59.611 45.833 0.30 0.00 0.00 3.18
2290 2378 4.621460 CGCATATACTCACCCTTATGAACG 59.379 45.833 0.00 0.00 0.00 3.95
2291 2379 4.389077 GCATATACTCACCCTTATGAACGC 59.611 45.833 0.00 0.00 0.00 4.84
2292 2380 5.538118 CATATACTCACCCTTATGAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
2293 2381 2.094762 ACTCACCCTTATGAACGCAC 57.905 50.000 0.00 0.00 0.00 5.34
2294 2382 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
2295 2383 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
2296 2384 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
2297 2385 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
2298 2386 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
2299 2387 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
2300 2388 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
2301 2389 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
2302 2390 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2303 2391 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2304 2392 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
2307 2395 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2308 2396 1.890041 GCACACACGCACACCCTAA 60.890 57.895 0.00 0.00 0.00 2.69
2309 2397 1.938861 CACACACGCACACCCTAAC 59.061 57.895 0.00 0.00 0.00 2.34
2310 2398 1.227734 ACACACGCACACCCTAACC 60.228 57.895 0.00 0.00 0.00 2.85
2311 2399 1.964373 CACACGCACACCCTAACCC 60.964 63.158 0.00 0.00 0.00 4.11
2312 2400 2.144738 ACACGCACACCCTAACCCT 61.145 57.895 0.00 0.00 0.00 4.34
2313 2401 0.832983 ACACGCACACCCTAACCCTA 60.833 55.000 0.00 0.00 0.00 3.53
2314 2402 0.539986 CACGCACACCCTAACCCTAT 59.460 55.000 0.00 0.00 0.00 2.57
2315 2403 0.539986 ACGCACACCCTAACCCTATG 59.460 55.000 0.00 0.00 0.00 2.23
2316 2404 0.828022 CGCACACCCTAACCCTATGA 59.172 55.000 0.00 0.00 0.00 2.15
2317 2405 1.202533 CGCACACCCTAACCCTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
2318 2406 1.475213 GCACACCCTAACCCTATGAGC 60.475 57.143 0.00 0.00 0.00 4.26
2319 2407 1.837439 CACACCCTAACCCTATGAGCA 59.163 52.381 0.00 0.00 0.00 4.26
2320 2408 1.838077 ACACCCTAACCCTATGAGCAC 59.162 52.381 0.00 0.00 0.00 4.40
2321 2409 1.141053 CACCCTAACCCTATGAGCACC 59.859 57.143 0.00 0.00 0.00 5.01
2322 2410 1.009675 ACCCTAACCCTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
2323 2411 1.694696 CCCTAACCCTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
2324 2412 1.694696 CCTAACCCTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
2325 2413 1.341531 CTAACCCTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
2326 2414 0.325296 AACCCTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
2327 2415 0.757188 ACCCTATGAGCACCTCCGAG 60.757 60.000 0.00 0.00 0.00 4.63
2328 2416 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
2329 2417 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
2330 2418 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
2331 2419 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
2332 2420 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
2333 2421 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
2334 2422 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
2335 2423 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
2336 2424 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
2337 2425 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
2338 2426 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
2339 2427 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
2340 2428 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
2341 2429 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
2342 2430 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
2343 2431 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
2344 2432 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
2345 2433 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
2346 2434 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
2347 2435 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
2348 2436 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
2349 2437 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
2350 2438 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
2351 2439 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
2352 2440 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2353 2441 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
2354 2442 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
2355 2443 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
2356 2444 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
2357 2445 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
2358 2446 4.217118 GCCGGCATATCATCTTGAGATTTT 59.783 41.667 24.80 0.00 31.21 1.82
2359 2447 5.412594 GCCGGCATATCATCTTGAGATTTTA 59.587 40.000 24.80 0.00 31.21 1.52
2360 2448 6.621596 GCCGGCATATCATCTTGAGATTTTAC 60.622 42.308 24.80 0.00 31.21 2.01
2361 2449 6.401474 CCGGCATATCATCTTGAGATTTTACG 60.401 42.308 0.00 0.00 31.21 3.18
2362 2450 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
2363 2451 7.095649 CGGCATATCATCTTGAGATTTTACGAA 60.096 37.037 0.00 0.00 31.21 3.85
2364 2452 8.226448 GGCATATCATCTTGAGATTTTACGAAG 58.774 37.037 0.00 0.00 31.21 3.79
2365 2453 8.768955 GCATATCATCTTGAGATTTTACGAAGT 58.231 33.333 0.00 0.00 37.29 3.01
2368 2456 8.954950 ATCATCTTGAGATTTTACGAAGTCAT 57.045 30.769 0.00 0.00 35.39 3.06
2369 2457 8.412608 TCATCTTGAGATTTTACGAAGTCATC 57.587 34.615 0.00 0.00 35.39 2.92
2370 2458 7.220875 TCATCTTGAGATTTTACGAAGTCATCG 59.779 37.037 0.00 0.00 44.39 3.84
2377 2465 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
2378 2466 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
2379 2467 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
2380 2468 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
2381 2469 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
2382 2470 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
2383 2471 1.524393 TCATCGTAGGCGCCTCGTA 60.524 57.895 36.73 22.95 38.14 3.43
2384 2472 1.082038 CATCGTAGGCGCCTCGTAG 60.082 63.158 36.73 24.62 38.14 3.51
2385 2473 1.525535 ATCGTAGGCGCCTCGTAGT 60.526 57.895 36.73 20.89 38.14 2.73
2386 2474 1.505477 ATCGTAGGCGCCTCGTAGTC 61.505 60.000 36.73 15.88 38.14 2.59
2387 2475 2.327244 GTAGGCGCCTCGTAGTCG 59.673 66.667 36.73 0.00 38.55 4.18
2388 2476 2.176273 GTAGGCGCCTCGTAGTCGA 61.176 63.158 36.73 10.36 44.12 4.20
2389 2477 2.176273 TAGGCGCCTCGTAGTCGAC 61.176 63.158 36.73 7.70 41.35 4.20
2408 2496 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2409 2497 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2410 2498 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2411 2499 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2412 2500 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2413 2501 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2414 2502 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
2415 2503 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
2416 2504 0.832135 TCTCCTCCCACTGAAAGCGT 60.832 55.000 0.00 0.00 37.60 5.07
2417 2505 0.895530 CTCCTCCCACTGAAAGCGTA 59.104 55.000 0.00 0.00 37.60 4.42
2418 2506 1.482593 CTCCTCCCACTGAAAGCGTAT 59.517 52.381 0.00 0.00 37.60 3.06
2419 2507 1.480954 TCCTCCCACTGAAAGCGTATC 59.519 52.381 0.00 0.00 37.60 2.24
2420 2508 1.560923 CTCCCACTGAAAGCGTATCG 58.439 55.000 0.00 0.00 37.60 2.92
2433 2521 1.847818 CGTATCGCCGGAATTTCTGA 58.152 50.000 5.05 0.00 0.00 3.27
2434 2522 2.198406 CGTATCGCCGGAATTTCTGAA 58.802 47.619 5.05 0.00 0.00 3.02
2435 2523 2.605818 CGTATCGCCGGAATTTCTGAAA 59.394 45.455 5.05 5.15 0.00 2.69
2436 2524 3.247648 CGTATCGCCGGAATTTCTGAAAT 59.752 43.478 5.05 9.76 0.00 2.17
2437 2525 4.446385 CGTATCGCCGGAATTTCTGAAATA 59.554 41.667 15.45 0.00 0.00 1.40
2438 2526 5.050634 CGTATCGCCGGAATTTCTGAAATAA 60.051 40.000 15.45 0.00 0.00 1.40
2439 2527 5.828299 ATCGCCGGAATTTCTGAAATAAA 57.172 34.783 15.45 0.00 0.00 1.40
2440 2528 5.828299 TCGCCGGAATTTCTGAAATAAAT 57.172 34.783 15.45 0.98 0.00 1.40
2441 2529 5.816919 TCGCCGGAATTTCTGAAATAAATC 58.183 37.500 15.45 9.77 0.00 2.17
2442 2530 4.976116 CGCCGGAATTTCTGAAATAAATCC 59.024 41.667 15.45 16.32 0.00 3.01
2443 2531 5.449862 CGCCGGAATTTCTGAAATAAATCCA 60.450 40.000 22.63 0.00 0.00 3.41
2444 2532 5.979517 GCCGGAATTTCTGAAATAAATCCAG 59.020 40.000 22.63 16.43 0.00 3.86
2445 2533 6.507023 CCGGAATTTCTGAAATAAATCCAGG 58.493 40.000 22.63 20.18 0.00 4.45
2446 2534 6.321181 CCGGAATTTCTGAAATAAATCCAGGA 59.679 38.462 22.63 0.00 0.00 3.86
2447 2535 7.014615 CCGGAATTTCTGAAATAAATCCAGGAT 59.985 37.037 22.63 0.00 0.00 3.24
2448 2536 9.066892 CGGAATTTCTGAAATAAATCCAGGATA 57.933 33.333 22.63 0.00 0.00 2.59
2454 2542 7.874940 TCTGAAATAAATCCAGGATAAATGCG 58.125 34.615 1.02 0.00 0.00 4.73
2455 2543 7.719193 TCTGAAATAAATCCAGGATAAATGCGA 59.281 33.333 1.02 0.00 0.00 5.10
2456 2544 7.874940 TGAAATAAATCCAGGATAAATGCGAG 58.125 34.615 1.02 0.00 0.00 5.03
2457 2545 5.886960 ATAAATCCAGGATAAATGCGAGC 57.113 39.130 1.02 0.00 0.00 5.03
2458 2546 2.936919 ATCCAGGATAAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2459 2547 2.936919 TCCAGGATAAATGCGAGCAT 57.063 45.000 4.52 4.52 38.46 3.79
2460 2548 2.771089 TCCAGGATAAATGCGAGCATC 58.229 47.619 11.26 0.00 35.31 3.91
2461 2549 2.104622 TCCAGGATAAATGCGAGCATCA 59.895 45.455 11.26 3.11 35.31 3.07
2462 2550 2.483106 CCAGGATAAATGCGAGCATCAG 59.517 50.000 11.26 0.00 35.31 2.90
2463 2551 2.483106 CAGGATAAATGCGAGCATCAGG 59.517 50.000 11.26 0.00 35.31 3.86
2464 2552 2.369860 AGGATAAATGCGAGCATCAGGA 59.630 45.455 11.26 0.00 35.31 3.86
2465 2553 3.008813 AGGATAAATGCGAGCATCAGGAT 59.991 43.478 11.26 2.86 35.31 3.24
2466 2554 3.755378 GGATAAATGCGAGCATCAGGATT 59.245 43.478 11.26 4.31 35.31 3.01
2467 2555 4.217118 GGATAAATGCGAGCATCAGGATTT 59.783 41.667 11.26 4.40 40.41 2.17
2468 2556 3.431922 AAATGCGAGCATCAGGATTTG 57.568 42.857 11.26 0.00 37.87 2.32
2469 2557 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
2470 2558 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
2471 2559 1.739466 TGCGAGCATCAGGATTTGAAC 59.261 47.619 0.00 0.00 39.77 3.18
2472 2560 1.064654 GCGAGCATCAGGATTTGAACC 59.935 52.381 0.00 0.00 39.77 3.62
2473 2561 1.672881 CGAGCATCAGGATTTGAACCC 59.327 52.381 0.00 0.00 39.77 4.11
2474 2562 2.681976 CGAGCATCAGGATTTGAACCCT 60.682 50.000 0.00 0.00 39.77 4.34
2492 2580 3.882102 CCTGATGGGTTGGGAATATCA 57.118 47.619 0.00 0.00 0.00 2.15
2493 2581 3.490348 CCTGATGGGTTGGGAATATCAC 58.510 50.000 0.00 0.00 0.00 3.06
2494 2582 3.139025 CCTGATGGGTTGGGAATATCACT 59.861 47.826 0.00 0.00 0.00 3.41
2495 2583 4.139786 CTGATGGGTTGGGAATATCACTG 58.860 47.826 0.00 0.00 0.00 3.66
2496 2584 3.527253 TGATGGGTTGGGAATATCACTGT 59.473 43.478 0.00 0.00 0.00 3.55
2497 2585 3.644966 TGGGTTGGGAATATCACTGTC 57.355 47.619 0.00 0.00 0.00 3.51
2498 2586 2.241176 TGGGTTGGGAATATCACTGTCC 59.759 50.000 0.00 0.00 0.00 4.02
2499 2587 2.241176 GGGTTGGGAATATCACTGTCCA 59.759 50.000 0.00 0.00 32.70 4.02
2500 2588 3.279434 GGTTGGGAATATCACTGTCCAC 58.721 50.000 0.00 0.00 32.70 4.02
2501 2589 3.279434 GTTGGGAATATCACTGTCCACC 58.721 50.000 0.00 0.00 32.70 4.61
2502 2590 2.845659 TGGGAATATCACTGTCCACCT 58.154 47.619 0.00 0.00 32.70 4.00
2503 2591 4.002256 TGGGAATATCACTGTCCACCTA 57.998 45.455 0.00 0.00 32.70 3.08
2504 2592 4.367166 TGGGAATATCACTGTCCACCTAA 58.633 43.478 0.00 0.00 32.70 2.69
2505 2593 4.163458 TGGGAATATCACTGTCCACCTAAC 59.837 45.833 0.00 0.00 32.70 2.34
2506 2594 4.444449 GGGAATATCACTGTCCACCTAACC 60.444 50.000 0.00 0.00 32.70 2.85
2507 2595 4.163458 GGAATATCACTGTCCACCTAACCA 59.837 45.833 0.00 0.00 0.00 3.67
2508 2596 5.163195 GGAATATCACTGTCCACCTAACCAT 60.163 44.000 0.00 0.00 0.00 3.55
2509 2597 3.914426 ATCACTGTCCACCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
2510 2598 2.902608 TCACTGTCCACCTAACCATCT 58.097 47.619 0.00 0.00 0.00 2.90
2511 2599 2.832129 TCACTGTCCACCTAACCATCTC 59.168 50.000 0.00 0.00 0.00 2.75
2512 2600 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
2513 2601 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
2514 2602 3.846588 ACTGTCCACCTAACCATCTCAAT 59.153 43.478 0.00 0.00 0.00 2.57
2515 2603 4.080863 ACTGTCCACCTAACCATCTCAATC 60.081 45.833 0.00 0.00 0.00 2.67
2516 2604 3.843619 TGTCCACCTAACCATCTCAATCA 59.156 43.478 0.00 0.00 0.00 2.57
2517 2605 4.080919 TGTCCACCTAACCATCTCAATCAG 60.081 45.833 0.00 0.00 0.00 2.90
2518 2606 4.162320 GTCCACCTAACCATCTCAATCAGA 59.838 45.833 0.00 0.00 34.78 3.27
2519 2607 4.406972 TCCACCTAACCATCTCAATCAGAG 59.593 45.833 0.00 0.00 46.14 3.35
2520 2608 4.444022 CCACCTAACCATCTCAATCAGAGG 60.444 50.000 0.00 0.00 44.81 3.69
2521 2609 4.163078 CACCTAACCATCTCAATCAGAGGT 59.837 45.833 0.00 0.00 44.81 3.85
2522 2610 4.785376 ACCTAACCATCTCAATCAGAGGTT 59.215 41.667 0.00 0.00 44.81 3.50
2523 2611 5.121811 CCTAACCATCTCAATCAGAGGTTG 58.878 45.833 0.00 0.00 44.81 3.77
2524 2612 3.641434 ACCATCTCAATCAGAGGTTGG 57.359 47.619 11.11 11.11 45.69 3.77
2525 2613 2.915604 ACCATCTCAATCAGAGGTTGGT 59.084 45.455 12.04 12.04 46.93 3.67
2526 2614 3.960571 CCATCTCAATCAGAGGTTGGTT 58.039 45.455 0.00 0.00 44.81 3.67
2527 2615 3.944015 CCATCTCAATCAGAGGTTGGTTC 59.056 47.826 0.00 0.00 44.81 3.62
2528 2616 3.319137 TCTCAATCAGAGGTTGGTTCG 57.681 47.619 0.00 0.00 44.81 3.95
2529 2617 1.734465 CTCAATCAGAGGTTGGTTCGC 59.266 52.381 0.00 0.00 40.84 4.70
2558 2646 8.356533 TGAGTCTTAGTTAAACGACGATTTTT 57.643 30.769 0.00 0.00 0.00 1.94
2577 2665 4.734398 TTTTGTTTCAGTGGCATGTCTT 57.266 36.364 0.00 0.00 0.00 3.01
2629 2717 7.604164 ACAAATATCGTTGTGAGTTTCAGAGAT 59.396 33.333 0.00 0.00 40.22 2.75
2630 2718 9.087424 CAAATATCGTTGTGAGTTTCAGAGATA 57.913 33.333 0.00 0.00 0.00 1.98
2634 2722 6.277605 TCGTTGTGAGTTTCAGAGATACAAA 58.722 36.000 0.00 0.00 0.00 2.83
2690 2778 8.632679 TGTTAAGATGAACTTGCATTTTCTTCT 58.367 29.630 15.27 15.27 39.38 2.85
2694 2782 6.713903 AGATGAACTTGCATTTTCTTCTGAGA 59.286 34.615 18.20 0.00 35.81 3.27
2916 3004 3.454812 TGAAAGGAGTACATCTAAGGGGC 59.545 47.826 0.00 0.00 0.00 5.80
2941 3030 3.146066 TGACACCTCCAAACAATAGTGC 58.854 45.455 0.00 0.00 0.00 4.40
2948 3037 4.074970 CTCCAAACAATAGTGCTGGTTCT 58.925 43.478 10.64 0.00 34.61 3.01
2965 3054 5.875224 TGGTTCTAGTGATCCAATGAACAA 58.125 37.500 15.53 6.47 38.65 2.83
2971 3060 9.912634 TTCTAGTGATCCAATGAACAATTTTTC 57.087 29.630 0.00 0.00 0.00 2.29
2987 3077 8.369218 ACAATTTTTCTACAAAAGAGGCATTG 57.631 30.769 0.00 0.00 35.05 2.82
3011 3101 0.613777 CGGCCTTAAACTGAGTCCCT 59.386 55.000 0.00 0.00 0.00 4.20
3039 3129 2.554893 GTTCCGGCACAAATAGGTTCAA 59.445 45.455 0.00 0.00 0.00 2.69
3041 3131 3.223435 TCCGGCACAAATAGGTTCAAAA 58.777 40.909 0.00 0.00 0.00 2.44
3062 3162 7.443879 TCAAAACAACAAAGAAAAGAAAAGGCT 59.556 29.630 0.00 0.00 0.00 4.58
3064 3164 5.793817 ACAACAAAGAAAAGAAAAGGCTGT 58.206 33.333 0.00 0.00 0.00 4.40
3089 3190 2.233431 GGGCAAGCAATGGTTGATACAA 59.767 45.455 26.79 0.00 42.72 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.765795 GTTTATCCAGCTATATAACTGAACTGT 57.234 33.333 13.63 0.00 35.90 3.55
273 277 5.078949 TGGATGGCTTTGTTATATGGGATG 58.921 41.667 0.00 0.00 0.00 3.51
284 288 4.937015 GCATGTAAAAATGGATGGCTTTGT 59.063 37.500 0.00 0.00 0.00 2.83
368 372 3.253432 AGGCAGCAACAGTTTTAAGTAGC 59.747 43.478 0.00 0.00 0.00 3.58
398 402 1.493871 AGCTCCTTGCAATATCCTGCT 59.506 47.619 0.00 1.75 45.94 4.24
430 434 6.073548 TGCAAAGTTTAAACCACAAAACACAG 60.074 34.615 14.72 0.00 37.92 3.66
508 512 3.682858 TCTTCATCATTTCGAACCGAACC 59.317 43.478 0.00 0.00 45.64 3.62
522 526 6.974048 CGCCAAATAAACAATGATCTTCATCA 59.026 34.615 0.00 0.00 43.45 3.07
523 527 6.974622 ACGCCAAATAAACAATGATCTTCATC 59.025 34.615 0.00 0.00 35.76 2.92
528 532 6.266168 TCAACGCCAAATAAACAATGATCT 57.734 33.333 0.00 0.00 0.00 2.75
668 675 4.651503 GGTTCTCTCACCCTCAATATCTGA 59.348 45.833 0.00 0.00 0.00 3.27
693 700 1.474143 GCTGGGACCAGAGTTCTATGC 60.474 57.143 22.03 0.12 46.30 3.14
701 708 1.153208 GCATCTGCTGGGACCAGAG 60.153 63.158 22.03 14.95 46.30 3.35
750 757 8.383318 TGCAAAGCTGAATTATATCTACCTTC 57.617 34.615 0.00 0.00 0.00 3.46
751 758 8.930846 ATGCAAAGCTGAATTATATCTACCTT 57.069 30.769 0.00 0.00 0.00 3.50
859 866 6.902771 ATCTGTTACTACCGCTCTAATCAT 57.097 37.500 0.00 0.00 0.00 2.45
860 867 6.710597 AATCTGTTACTACCGCTCTAATCA 57.289 37.500 0.00 0.00 0.00 2.57
871 878 3.802685 CGCCTTGCCTAATCTGTTACTAC 59.197 47.826 0.00 0.00 0.00 2.73
872 879 3.740141 GCGCCTTGCCTAATCTGTTACTA 60.740 47.826 0.00 0.00 37.76 1.82
873 880 2.906354 CGCCTTGCCTAATCTGTTACT 58.094 47.619 0.00 0.00 0.00 2.24
946 953 0.389817 TGACGGCGAAATCTGTCCAG 60.390 55.000 16.62 0.00 40.69 3.86
975 982 3.430497 CCCTCCTCCCCTCCTCGA 61.430 72.222 0.00 0.00 0.00 4.04
983 990 1.463018 ATGATCTGGCCCTCCTCCC 60.463 63.158 0.00 0.00 0.00 4.30
990 997 2.203451 CCCTGCATGATCTGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
995 1002 1.129917 CCAGACTCCCTGCATGATCT 58.870 55.000 0.00 0.00 41.57 2.75
1040 1047 2.114411 TTTGGTGGAGGCCGGAAC 59.886 61.111 5.05 0.00 0.00 3.62
1097 1104 1.613925 GATCCCTCGTGCAGCTATACA 59.386 52.381 0.00 0.00 0.00 2.29
1101 1108 2.420138 GAGATCCCTCGTGCAGCTA 58.580 57.895 0.00 0.00 0.00 3.32
1142 1178 3.136123 CGGGCATGAACAGCAGGG 61.136 66.667 0.00 0.00 0.00 4.45
1353 1398 1.341209 CGCTGCTGTATCCACTATCCA 59.659 52.381 0.00 0.00 0.00 3.41
1354 1399 1.613925 TCGCTGCTGTATCCACTATCC 59.386 52.381 0.00 0.00 0.00 2.59
1355 1400 2.352225 CCTCGCTGCTGTATCCACTATC 60.352 54.545 0.00 0.00 0.00 2.08
1356 1401 1.615883 CCTCGCTGCTGTATCCACTAT 59.384 52.381 0.00 0.00 0.00 2.12
1357 1402 1.032794 CCTCGCTGCTGTATCCACTA 58.967 55.000 0.00 0.00 0.00 2.74
1358 1403 1.819229 CCTCGCTGCTGTATCCACT 59.181 57.895 0.00 0.00 0.00 4.00
1359 1404 1.884926 GCCTCGCTGCTGTATCCAC 60.885 63.158 0.00 0.00 0.00 4.02
1540 1628 3.800685 CTGGTCAACGTCCACGCCA 62.801 63.158 0.00 0.00 44.43 5.69
1552 1640 1.754380 CTTCACCGGTCACCTGGTCA 61.754 60.000 2.59 0.00 35.96 4.02
1636 1724 3.931190 TAGGCGGCCTGTCGAGTCA 62.931 63.158 31.26 5.71 34.61 3.41
1798 1886 1.920835 GCCTGTCTTGGGACCTCCT 60.921 63.158 0.00 0.00 41.47 3.69
1799 1887 2.224159 TGCCTGTCTTGGGACCTCC 61.224 63.158 0.00 0.00 41.47 4.30
1800 1888 1.003233 GTGCCTGTCTTGGGACCTC 60.003 63.158 0.00 0.00 41.73 3.85
1859 1947 0.250727 CCTTTCTTGTCCGGCCTCAA 60.251 55.000 0.00 2.90 0.00 3.02
1911 1999 9.475620 TCTATCTGACACTAAAATGGAGTTCTA 57.524 33.333 0.00 0.00 0.00 2.10
1925 2013 7.237982 AGGCAAGTAGATATCTATCTGACACT 58.762 38.462 22.50 12.26 42.66 3.55
1927 2015 7.725844 TCAAGGCAAGTAGATATCTATCTGACA 59.274 37.037 22.50 7.84 42.66 3.58
1931 2019 7.474445 TCCTCAAGGCAAGTAGATATCTATCT 58.526 38.462 15.43 11.27 39.61 1.98
1937 2025 4.221703 CCGATCCTCAAGGCAAGTAGATAT 59.778 45.833 0.00 0.00 34.44 1.63
1938 2026 3.574396 CCGATCCTCAAGGCAAGTAGATA 59.426 47.826 0.00 0.00 34.44 1.98
1960 2048 2.032377 TCGATTATTTTTCCATCGGCGC 60.032 45.455 0.00 0.00 40.21 6.53
1964 2052 7.639039 TCATTTCCTCGATTATTTTTCCATCG 58.361 34.615 0.00 0.00 40.98 3.84
1985 2073 2.626467 GGCCTTGGGTCCCCTCATT 61.626 63.158 5.13 0.00 36.94 2.57
1991 2079 4.382541 CCCTTGGCCTTGGGTCCC 62.383 72.222 21.03 0.00 38.65 4.46
2019 2107 0.678048 GTCCATTCCACCACCTCTGC 60.678 60.000 0.00 0.00 0.00 4.26
2034 2122 1.884075 AATAGTCTGCCGCGTGTCCA 61.884 55.000 4.92 0.00 0.00 4.02
2040 2128 1.705337 CCCACAAATAGTCTGCCGCG 61.705 60.000 0.00 0.00 0.00 6.46
2085 2173 1.065491 TCTCTATTTGCGTGTGGCCAT 60.065 47.619 9.72 0.00 42.61 4.40
2127 2215 3.482722 ACGATCAAGCTCAATGCAAAG 57.517 42.857 0.00 0.00 45.94 2.77
2233 2321 3.711086 CGCTTATGTCTGTACTGATGCT 58.289 45.455 5.69 0.00 0.00 3.79
2234 2322 2.219674 GCGCTTATGTCTGTACTGATGC 59.780 50.000 0.00 5.48 0.00 3.91
2235 2323 3.711086 AGCGCTTATGTCTGTACTGATG 58.289 45.455 2.64 0.00 0.00 3.07
2236 2324 3.381590 TGAGCGCTTATGTCTGTACTGAT 59.618 43.478 13.26 0.00 0.00 2.90
2237 2325 2.752903 TGAGCGCTTATGTCTGTACTGA 59.247 45.455 13.26 0.00 0.00 3.41
2238 2326 3.150848 TGAGCGCTTATGTCTGTACTG 57.849 47.619 13.26 0.00 0.00 2.74
2239 2327 5.713792 ATATGAGCGCTTATGTCTGTACT 57.286 39.130 23.64 0.00 0.00 2.73
2240 2328 6.305877 GTGTATATGAGCGCTTATGTCTGTAC 59.694 42.308 23.64 16.58 0.00 2.90
2241 2329 6.379386 GTGTATATGAGCGCTTATGTCTGTA 58.621 40.000 23.64 3.74 0.00 2.74
2242 2330 5.223382 GTGTATATGAGCGCTTATGTCTGT 58.777 41.667 23.64 7.75 0.00 3.41
2243 2331 4.322009 CGTGTATATGAGCGCTTATGTCTG 59.678 45.833 23.64 5.88 0.00 3.51
2244 2332 4.476862 CGTGTATATGAGCGCTTATGTCT 58.523 43.478 23.64 11.09 0.00 3.41
2245 2333 3.059570 GCGTGTATATGAGCGCTTATGTC 59.940 47.826 23.64 13.69 45.48 3.06
2246 2334 2.987149 GCGTGTATATGAGCGCTTATGT 59.013 45.455 23.64 19.44 45.48 2.29
2247 2335 2.026860 CGCGTGTATATGAGCGCTTATG 59.973 50.000 23.64 7.66 46.56 1.90
2248 2336 2.251040 CGCGTGTATATGAGCGCTTAT 58.749 47.619 19.33 19.33 46.56 1.73
2249 2337 1.681825 CGCGTGTATATGAGCGCTTA 58.318 50.000 13.26 8.30 46.56 3.09
2250 2338 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
2251 2339 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
2254 2342 4.352039 AGTATATGCGCGTGTATATGAGC 58.648 43.478 24.28 15.73 38.85 4.26
2255 2343 5.452623 GTGAGTATATGCGCGTGTATATGAG 59.547 44.000 24.28 0.00 34.71 2.90
2256 2344 5.329493 GTGAGTATATGCGCGTGTATATGA 58.671 41.667 24.28 9.82 34.71 2.15
2257 2345 4.499399 GGTGAGTATATGCGCGTGTATATG 59.501 45.833 24.28 0.00 34.71 1.78
2258 2346 4.439700 GGGTGAGTATATGCGCGTGTATAT 60.440 45.833 20.79 20.79 37.23 0.86
2259 2347 3.119743 GGGTGAGTATATGCGCGTGTATA 60.120 47.826 13.61 9.23 0.00 1.47
2260 2348 2.352421 GGGTGAGTATATGCGCGTGTAT 60.352 50.000 13.61 9.22 0.00 2.29
2261 2349 1.001048 GGGTGAGTATATGCGCGTGTA 60.001 52.381 13.61 7.27 0.00 2.90
2262 2350 0.249322 GGGTGAGTATATGCGCGTGT 60.249 55.000 13.61 8.52 0.00 4.49
2263 2351 0.032130 AGGGTGAGTATATGCGCGTG 59.968 55.000 13.61 0.00 0.00 5.34
2264 2352 0.750850 AAGGGTGAGTATATGCGCGT 59.249 50.000 8.43 7.55 0.00 6.01
2265 2353 2.717580 TAAGGGTGAGTATATGCGCG 57.282 50.000 0.00 0.00 0.00 6.86
2266 2354 4.188247 TCATAAGGGTGAGTATATGCGC 57.812 45.455 0.00 0.00 0.00 6.09
2267 2355 4.621460 CGTTCATAAGGGTGAGTATATGCG 59.379 45.833 0.00 0.00 0.00 4.73
2268 2356 4.389077 GCGTTCATAAGGGTGAGTATATGC 59.611 45.833 0.00 0.00 0.00 3.14
2269 2357 5.405571 GTGCGTTCATAAGGGTGAGTATATG 59.594 44.000 0.00 0.00 0.00 1.78
2270 2358 5.069914 TGTGCGTTCATAAGGGTGAGTATAT 59.930 40.000 0.00 0.00 0.00 0.86
2271 2359 4.403113 TGTGCGTTCATAAGGGTGAGTATA 59.597 41.667 0.00 0.00 0.00 1.47
2272 2360 3.196901 TGTGCGTTCATAAGGGTGAGTAT 59.803 43.478 0.00 0.00 0.00 2.12
2273 2361 2.563620 TGTGCGTTCATAAGGGTGAGTA 59.436 45.455 0.00 0.00 0.00 2.59
2274 2362 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
2275 2363 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
2276 2364 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
2277 2365 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
2278 2366 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
2279 2367 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
2280 2368 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
2281 2369 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
2282 2370 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
2283 2371 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2284 2372 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2285 2373 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2286 2374 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2287 2375 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2290 2378 1.890041 TTAGGGTGTGCGTGTGTGC 60.890 57.895 0.00 0.00 0.00 4.57
2291 2379 1.503818 GGTTAGGGTGTGCGTGTGTG 61.504 60.000 0.00 0.00 0.00 3.82
2292 2380 1.227734 GGTTAGGGTGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
2293 2381 1.964373 GGGTTAGGGTGTGCGTGTG 60.964 63.158 0.00 0.00 0.00 3.82
2294 2382 0.832983 TAGGGTTAGGGTGTGCGTGT 60.833 55.000 0.00 0.00 0.00 4.49
2295 2383 0.539986 ATAGGGTTAGGGTGTGCGTG 59.460 55.000 0.00 0.00 0.00 5.34
2296 2384 0.539986 CATAGGGTTAGGGTGTGCGT 59.460 55.000 0.00 0.00 0.00 5.24
2297 2385 0.828022 TCATAGGGTTAGGGTGTGCG 59.172 55.000 0.00 0.00 0.00 5.34
2298 2386 1.475213 GCTCATAGGGTTAGGGTGTGC 60.475 57.143 0.00 0.00 0.00 4.57
2299 2387 1.837439 TGCTCATAGGGTTAGGGTGTG 59.163 52.381 0.00 0.00 0.00 3.82
2300 2388 1.838077 GTGCTCATAGGGTTAGGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
2301 2389 1.141053 GGTGCTCATAGGGTTAGGGTG 59.859 57.143 0.00 0.00 0.00 4.61
2302 2390 1.009675 AGGTGCTCATAGGGTTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
2303 2391 1.694696 GAGGTGCTCATAGGGTTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
2304 2392 1.694696 GGAGGTGCTCATAGGGTTAGG 59.305 57.143 0.00 0.00 31.08 2.69
2305 2393 1.341531 CGGAGGTGCTCATAGGGTTAG 59.658 57.143 0.00 0.00 31.08 2.34
2306 2394 1.063492 TCGGAGGTGCTCATAGGGTTA 60.063 52.381 0.00 0.00 31.08 2.85
2307 2395 0.325296 TCGGAGGTGCTCATAGGGTT 60.325 55.000 0.00 0.00 31.08 4.11
2308 2396 0.757188 CTCGGAGGTGCTCATAGGGT 60.757 60.000 0.00 0.00 31.08 4.34
2309 2397 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
2310 2398 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
2311 2399 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
2312 2400 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
2313 2401 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
2314 2402 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
2315 2403 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
2316 2404 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
2317 2405 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
2318 2406 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
2319 2407 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
2320 2408 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
2321 2409 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
2322 2410 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
2323 2411 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
2324 2412 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
2325 2413 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
2326 2414 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
2327 2415 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
2328 2416 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
2329 2417 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
2330 2418 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
2331 2419 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
2332 2420 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
2333 2421 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
2334 2422 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
2335 2423 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
2336 2424 5.954296 AAAATCTCAAGATGATATGCCGG 57.046 39.130 0.00 0.00 34.49 6.13
2337 2425 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
2338 2426 7.658179 TCGTAAAATCTCAAGATGATATGCC 57.342 36.000 0.00 0.00 34.49 4.40
2339 2427 8.768955 ACTTCGTAAAATCTCAAGATGATATGC 58.231 33.333 0.00 0.00 34.49 3.14
2343 2431 8.954950 ATGACTTCGTAAAATCTCAAGATGAT 57.045 30.769 0.00 0.00 34.49 2.45
2344 2432 7.220875 CGATGACTTCGTAAAATCTCAAGATGA 59.779 37.037 2.72 0.00 43.01 2.92
2345 2433 7.333269 CGATGACTTCGTAAAATCTCAAGATG 58.667 38.462 2.72 0.00 43.01 2.90
2346 2434 7.456684 CGATGACTTCGTAAAATCTCAAGAT 57.543 36.000 2.72 0.00 43.01 2.40
2347 2435 6.871044 CGATGACTTCGTAAAATCTCAAGA 57.129 37.500 2.72 0.00 43.01 3.02
2361 2449 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
2362 2450 1.437986 GAGGCGCCTACGATGACTT 59.562 57.895 32.97 2.04 43.93 3.01
2363 2451 2.835705 CGAGGCGCCTACGATGACT 61.836 63.158 32.97 3.02 43.93 3.41
2364 2452 1.779025 TACGAGGCGCCTACGATGAC 61.779 60.000 37.37 22.42 43.93 3.06
2365 2453 1.504647 CTACGAGGCGCCTACGATGA 61.505 60.000 37.37 25.55 43.93 2.92
2366 2454 1.082038 CTACGAGGCGCCTACGATG 60.082 63.158 37.37 27.92 43.93 3.84
2367 2455 1.505477 GACTACGAGGCGCCTACGAT 61.505 60.000 37.37 27.38 43.93 3.73
2368 2456 2.124983 ACTACGAGGCGCCTACGA 60.125 61.111 37.37 25.26 43.93 3.43
2369 2457 2.327244 GACTACGAGGCGCCTACG 59.673 66.667 32.97 32.67 44.07 3.51
2370 2458 2.327244 CGACTACGAGGCGCCTAC 59.673 66.667 32.97 21.51 41.27 3.18
2380 2468 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
2392 2480 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2393 2481 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2394 2482 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2395 2483 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2396 2484 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2397 2485 0.832135 ACGCTTTCAGTGGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
2398 2486 0.895530 TACGCTTTCAGTGGGAGGAG 59.104 55.000 0.00 0.00 0.00 3.69
2399 2487 1.480954 GATACGCTTTCAGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
2400 2488 1.802880 CGATACGCTTTCAGTGGGAGG 60.803 57.143 0.00 0.00 0.00 4.30
2401 2489 1.560923 CGATACGCTTTCAGTGGGAG 58.439 55.000 0.00 0.00 0.00 4.30
2402 2490 3.733236 CGATACGCTTTCAGTGGGA 57.267 52.632 0.00 0.00 0.00 4.37
2413 2501 7.026072 TATTTCAGAAATTCCGGCGATACGC 62.026 44.000 13.71 7.62 41.02 4.42
2414 2502 1.847818 TCAGAAATTCCGGCGATACG 58.152 50.000 9.30 0.00 0.00 3.06
2415 2503 4.813296 ATTTCAGAAATTCCGGCGATAC 57.187 40.909 9.30 0.00 0.00 2.24
2416 2504 6.928979 TTTATTTCAGAAATTCCGGCGATA 57.071 33.333 13.71 0.00 32.38 2.92
2417 2505 5.828299 TTTATTTCAGAAATTCCGGCGAT 57.172 34.783 13.71 0.00 32.38 4.58
2418 2506 5.220970 GGATTTATTTCAGAAATTCCGGCGA 60.221 40.000 13.71 0.00 32.38 5.54
2419 2507 4.976116 GGATTTATTTCAGAAATTCCGGCG 59.024 41.667 13.71 0.00 32.38 6.46
2420 2508 5.901552 TGGATTTATTTCAGAAATTCCGGC 58.098 37.500 13.71 1.31 32.38 6.13
2421 2509 6.321181 TCCTGGATTTATTTCAGAAATTCCGG 59.679 38.462 19.35 19.35 32.38 5.14
2422 2510 7.333528 TCCTGGATTTATTTCAGAAATTCCG 57.666 36.000 13.71 10.38 32.38 4.30
2428 2516 8.352201 CGCATTTATCCTGGATTTATTTCAGAA 58.648 33.333 15.55 0.00 0.00 3.02
2429 2517 7.719193 TCGCATTTATCCTGGATTTATTTCAGA 59.281 33.333 15.55 3.34 0.00 3.27
2430 2518 7.874940 TCGCATTTATCCTGGATTTATTTCAG 58.125 34.615 15.55 1.04 0.00 3.02
2431 2519 7.522073 GCTCGCATTTATCCTGGATTTATTTCA 60.522 37.037 15.55 0.00 0.00 2.69
2432 2520 6.803807 GCTCGCATTTATCCTGGATTTATTTC 59.196 38.462 15.55 0.09 0.00 2.17
2433 2521 6.265196 TGCTCGCATTTATCCTGGATTTATTT 59.735 34.615 15.55 0.00 0.00 1.40
2434 2522 5.769662 TGCTCGCATTTATCCTGGATTTATT 59.230 36.000 15.55 0.00 0.00 1.40
2435 2523 5.316167 TGCTCGCATTTATCCTGGATTTAT 58.684 37.500 15.55 5.99 0.00 1.40
2436 2524 4.713553 TGCTCGCATTTATCCTGGATTTA 58.286 39.130 15.55 3.70 0.00 1.40
2437 2525 3.554934 TGCTCGCATTTATCCTGGATTT 58.445 40.909 15.55 0.00 0.00 2.17
2438 2526 3.213206 TGCTCGCATTTATCCTGGATT 57.787 42.857 15.55 0.00 0.00 3.01
2439 2527 2.936919 TGCTCGCATTTATCCTGGAT 57.063 45.000 14.66 14.66 0.00 3.41
2440 2528 2.104622 TGATGCTCGCATTTATCCTGGA 59.895 45.455 5.79 0.00 36.70 3.86
2441 2529 2.483106 CTGATGCTCGCATTTATCCTGG 59.517 50.000 5.79 0.00 36.70 4.45
2442 2530 2.483106 CCTGATGCTCGCATTTATCCTG 59.517 50.000 5.79 0.00 36.70 3.86
2443 2531 2.369860 TCCTGATGCTCGCATTTATCCT 59.630 45.455 5.79 0.00 36.70 3.24
2444 2532 2.771089 TCCTGATGCTCGCATTTATCC 58.229 47.619 5.79 0.00 36.70 2.59
2445 2533 5.049198 TCAAATCCTGATGCTCGCATTTATC 60.049 40.000 5.79 0.00 36.70 1.75
2446 2534 4.823442 TCAAATCCTGATGCTCGCATTTAT 59.177 37.500 5.79 0.00 36.70 1.40
2447 2535 4.198530 TCAAATCCTGATGCTCGCATTTA 58.801 39.130 5.79 0.00 36.70 1.40
2448 2536 3.018856 TCAAATCCTGATGCTCGCATTT 58.981 40.909 5.79 0.00 36.70 2.32
2449 2537 2.646930 TCAAATCCTGATGCTCGCATT 58.353 42.857 5.79 0.00 36.70 3.56
2450 2538 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
2451 2539 1.739466 GTTCAAATCCTGATGCTCGCA 59.261 47.619 0.00 0.00 32.78 5.10
2452 2540 1.064654 GGTTCAAATCCTGATGCTCGC 59.935 52.381 0.00 0.00 32.78 5.03
2453 2541 1.672881 GGGTTCAAATCCTGATGCTCG 59.327 52.381 0.00 0.00 32.78 5.03
2454 2542 3.010200 AGGGTTCAAATCCTGATGCTC 57.990 47.619 0.00 0.00 38.36 4.26
2472 2560 3.139025 AGTGATATTCCCAACCCATCAGG 59.861 47.826 0.00 0.00 43.78 3.86
2473 2561 4.139786 CAGTGATATTCCCAACCCATCAG 58.860 47.826 0.00 0.00 0.00 2.90
2474 2562 3.527253 ACAGTGATATTCCCAACCCATCA 59.473 43.478 0.00 0.00 0.00 3.07
2475 2563 4.137543 GACAGTGATATTCCCAACCCATC 58.862 47.826 0.00 0.00 0.00 3.51
2476 2564 3.117512 GGACAGTGATATTCCCAACCCAT 60.118 47.826 0.00 0.00 0.00 4.00
2477 2565 2.241176 GGACAGTGATATTCCCAACCCA 59.759 50.000 0.00 0.00 0.00 4.51
2478 2566 2.241176 TGGACAGTGATATTCCCAACCC 59.759 50.000 0.00 0.00 0.00 4.11
2479 2567 3.279434 GTGGACAGTGATATTCCCAACC 58.721 50.000 0.00 0.00 0.00 3.77
2480 2568 3.054361 AGGTGGACAGTGATATTCCCAAC 60.054 47.826 0.00 0.00 0.00 3.77
2481 2569 3.189606 AGGTGGACAGTGATATTCCCAA 58.810 45.455 0.00 0.00 0.00 4.12
2482 2570 2.845659 AGGTGGACAGTGATATTCCCA 58.154 47.619 0.00 0.00 0.00 4.37
2483 2571 4.444449 GGTTAGGTGGACAGTGATATTCCC 60.444 50.000 0.00 0.00 0.00 3.97
2484 2572 4.163458 TGGTTAGGTGGACAGTGATATTCC 59.837 45.833 0.00 0.00 0.00 3.01
2485 2573 5.353394 TGGTTAGGTGGACAGTGATATTC 57.647 43.478 0.00 0.00 0.00 1.75
2486 2574 5.667626 AGATGGTTAGGTGGACAGTGATATT 59.332 40.000 0.00 0.00 0.00 1.28
2487 2575 5.219739 AGATGGTTAGGTGGACAGTGATAT 58.780 41.667 0.00 0.00 0.00 1.63
2488 2576 4.620723 AGATGGTTAGGTGGACAGTGATA 58.379 43.478 0.00 0.00 0.00 2.15
2489 2577 3.452627 GAGATGGTTAGGTGGACAGTGAT 59.547 47.826 0.00 0.00 0.00 3.06
2490 2578 2.832129 GAGATGGTTAGGTGGACAGTGA 59.168 50.000 0.00 0.00 0.00 3.41
2491 2579 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
2492 2580 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
2493 2581 3.981071 TTGAGATGGTTAGGTGGACAG 57.019 47.619 0.00 0.00 0.00 3.51
2494 2582 3.843619 TGATTGAGATGGTTAGGTGGACA 59.156 43.478 0.00 0.00 0.00 4.02
2495 2583 4.162320 TCTGATTGAGATGGTTAGGTGGAC 59.838 45.833 0.00 0.00 0.00 4.02
2496 2584 4.361783 TCTGATTGAGATGGTTAGGTGGA 58.638 43.478 0.00 0.00 0.00 4.02
2497 2585 4.444022 CCTCTGATTGAGATGGTTAGGTGG 60.444 50.000 0.00 0.00 45.39 4.61
2498 2586 4.163078 ACCTCTGATTGAGATGGTTAGGTG 59.837 45.833 0.00 0.00 45.39 4.00
2499 2587 4.366267 ACCTCTGATTGAGATGGTTAGGT 58.634 43.478 0.00 0.00 45.39 3.08
2500 2588 5.121811 CAACCTCTGATTGAGATGGTTAGG 58.878 45.833 6.66 0.00 45.39 2.69
2501 2589 5.121811 CCAACCTCTGATTGAGATGGTTAG 58.878 45.833 6.66 0.00 45.39 2.34
2502 2590 5.102953 CCAACCTCTGATTGAGATGGTTA 57.897 43.478 6.66 0.00 45.39 2.85
2503 2591 3.960571 CCAACCTCTGATTGAGATGGTT 58.039 45.455 0.00 0.00 45.39 3.67
2504 2592 3.641434 CCAACCTCTGATTGAGATGGT 57.359 47.619 0.00 0.00 45.39 3.55
2505 2593 3.641434 ACCAACCTCTGATTGAGATGG 57.359 47.619 12.54 12.54 46.17 3.51
2506 2594 3.620374 CGAACCAACCTCTGATTGAGATG 59.380 47.826 0.00 0.00 45.39 2.90
2507 2595 3.866651 CGAACCAACCTCTGATTGAGAT 58.133 45.455 0.00 0.00 45.39 2.75
2508 2596 2.612972 GCGAACCAACCTCTGATTGAGA 60.613 50.000 0.00 0.00 45.39 3.27
2509 2597 1.734465 GCGAACCAACCTCTGATTGAG 59.266 52.381 0.00 0.00 42.30 3.02
2510 2598 1.071542 TGCGAACCAACCTCTGATTGA 59.928 47.619 0.00 0.00 0.00 2.57
2511 2599 1.466167 CTGCGAACCAACCTCTGATTG 59.534 52.381 0.00 0.00 0.00 2.67
2512 2600 1.347707 TCTGCGAACCAACCTCTGATT 59.652 47.619 0.00 0.00 0.00 2.57
2513 2601 0.976641 TCTGCGAACCAACCTCTGAT 59.023 50.000 0.00 0.00 0.00 2.90
2514 2602 0.976641 ATCTGCGAACCAACCTCTGA 59.023 50.000 0.00 0.00 0.00 3.27
2515 2603 1.081892 CATCTGCGAACCAACCTCTG 58.918 55.000 0.00 0.00 0.00 3.35
2516 2604 0.976641 TCATCTGCGAACCAACCTCT 59.023 50.000 0.00 0.00 0.00 3.69
2517 2605 1.338200 ACTCATCTGCGAACCAACCTC 60.338 52.381 0.00 0.00 0.00 3.85
2518 2606 0.687354 ACTCATCTGCGAACCAACCT 59.313 50.000 0.00 0.00 0.00 3.50
2519 2607 1.079503 GACTCATCTGCGAACCAACC 58.920 55.000 0.00 0.00 0.00 3.77
2520 2608 2.086054 AGACTCATCTGCGAACCAAC 57.914 50.000 0.00 0.00 32.29 3.77
2521 2609 2.839486 AAGACTCATCTGCGAACCAA 57.161 45.000 0.00 0.00 34.48 3.67
2522 2610 2.826128 ACTAAGACTCATCTGCGAACCA 59.174 45.455 0.00 0.00 34.48 3.67
2523 2611 3.512033 ACTAAGACTCATCTGCGAACC 57.488 47.619 0.00 0.00 34.48 3.62
2524 2612 6.452611 CGTTTAACTAAGACTCATCTGCGAAC 60.453 42.308 0.00 0.00 34.48 3.95
2525 2613 5.571741 CGTTTAACTAAGACTCATCTGCGAA 59.428 40.000 0.00 0.00 34.48 4.70
2526 2614 5.093457 CGTTTAACTAAGACTCATCTGCGA 58.907 41.667 0.00 0.00 34.48 5.10
2527 2615 5.003590 GTCGTTTAACTAAGACTCATCTGCG 59.996 44.000 0.00 0.00 34.48 5.18
2528 2616 5.003590 CGTCGTTTAACTAAGACTCATCTGC 59.996 44.000 0.00 0.00 34.48 4.26
2529 2617 6.312487 TCGTCGTTTAACTAAGACTCATCTG 58.688 40.000 0.00 0.00 34.48 2.90
2558 2646 3.286353 TGAAGACATGCCACTGAAACAA 58.714 40.909 0.00 0.00 0.00 2.83
2577 2665 4.657814 AGCTTTAAGAAAGACCCCATGA 57.342 40.909 3.15 0.00 41.02 3.07
2610 2698 5.447624 TGTATCTCTGAAACTCACAACGA 57.552 39.130 0.00 0.00 0.00 3.85
2614 2702 9.778741 AGTATTTTTGTATCTCTGAAACTCACA 57.221 29.630 0.00 0.00 0.00 3.58
2629 2717 8.610248 TGCTACACAAAGCTAGTATTTTTGTA 57.390 30.769 15.02 15.02 41.60 2.41
2630 2718 7.228706 ACTGCTACACAAAGCTAGTATTTTTGT 59.771 33.333 14.57 14.57 43.61 2.83
2634 2722 9.099454 GATTACTGCTACACAAAGCTAGTATTT 57.901 33.333 0.00 0.00 43.19 1.40
2690 2778 4.443457 GGCTATGGCAGAACTAACATCTCA 60.443 45.833 2.58 0.00 40.87 3.27
2694 2782 2.434336 TCGGCTATGGCAGAACTAACAT 59.566 45.455 0.50 0.00 39.50 2.71
2746 2834 8.567285 AAGACTTACATTTAGGAATGAAGGTG 57.433 34.615 6.17 0.00 44.37 4.00
2891 2979 6.663734 CCCCTTAGATGTACTCCTTTCATTT 58.336 40.000 0.00 0.00 0.00 2.32
2894 2982 3.454812 GCCCCTTAGATGTACTCCTTTCA 59.545 47.826 0.00 0.00 0.00 2.69
2895 2983 3.712218 AGCCCCTTAGATGTACTCCTTTC 59.288 47.826 0.00 0.00 0.00 2.62
2898 2986 4.554553 TTAGCCCCTTAGATGTACTCCT 57.445 45.455 0.00 0.00 0.00 3.69
2913 3001 2.092323 GTTTGGAGGTGTCATTAGCCC 58.908 52.381 0.00 0.00 0.00 5.19
2916 3004 6.403636 GCACTATTGTTTGGAGGTGTCATTAG 60.404 42.308 0.00 0.00 0.00 1.73
2941 3030 5.491070 TGTTCATTGGATCACTAGAACCAG 58.509 41.667 13.97 0.00 45.95 4.00
2965 3054 6.424812 GCACAATGCCTCTTTTGTAGAAAAAT 59.575 34.615 0.00 0.00 37.42 1.82
2987 3077 1.302993 TCAGTTTAAGGCCGGGCAC 60.303 57.895 31.59 19.28 0.00 5.01
3011 3101 2.054232 TTTGTGCCGGAACCTTGTAA 57.946 45.000 11.01 0.00 0.00 2.41
3039 3129 6.710295 ACAGCCTTTTCTTTTCTTTGTTGTTT 59.290 30.769 0.00 0.00 0.00 2.83
3041 3131 5.793817 ACAGCCTTTTCTTTTCTTTGTTGT 58.206 33.333 0.00 0.00 0.00 3.32
3062 3162 0.469705 ACCATTGCTTGCCCTTGACA 60.470 50.000 0.00 0.00 0.00 3.58
3064 3164 0.680618 CAACCATTGCTTGCCCTTGA 59.319 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.