Multiple sequence alignment - TraesCS2A01G260100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G260100
chr2A
100.000
4367
0
0
1
4367
409638606
409642972
0.000000e+00
8065.0
1
TraesCS2A01G260100
chr2A
88.221
798
74
17
1
786
749806565
749805776
0.000000e+00
935.0
2
TraesCS2A01G260100
chr2B
95.200
3500
109
20
784
4268
390118440
390114985
0.000000e+00
5478.0
3
TraesCS2A01G260100
chr2B
91.135
846
56
7
784
1617
390144590
390143752
0.000000e+00
1129.0
4
TraesCS2A01G260100
chr2B
88.596
114
4
3
4263
4367
390114963
390114850
3.540000e-26
130.0
5
TraesCS2A01G260100
chr2B
97.561
41
1
0
1630
1670
390143757
390143717
2.180000e-08
71.3
6
TraesCS2A01G260100
chr2D
96.457
2766
68
13
784
3529
321915040
321912285
0.000000e+00
4538.0
7
TraesCS2A01G260100
chr2D
89.975
808
34
12
3584
4367
321912284
321911500
0.000000e+00
1000.0
8
TraesCS2A01G260100
chr6B
88.592
710
73
7
1
703
716924887
716925595
0.000000e+00
856.0
9
TraesCS2A01G260100
chr4D
86.198
797
90
18
1
786
202360067
202359280
0.000000e+00
845.0
10
TraesCS2A01G260100
chr5A
89.728
662
63
5
12
670
561669546
561668887
0.000000e+00
841.0
11
TraesCS2A01G260100
chr5A
100.000
30
0
0
1864
1893
651990579
651990550
6.100000e-04
56.5
12
TraesCS2A01G260100
chr4A
86.150
787
96
10
12
791
73151699
73150919
0.000000e+00
837.0
13
TraesCS2A01G260100
chr3A
89.169
674
64
8
1
670
574258908
574258240
0.000000e+00
832.0
14
TraesCS2A01G260100
chr5B
85.804
796
94
16
1
786
478767504
478768290
0.000000e+00
826.0
15
TraesCS2A01G260100
chr7B
90.000
640
59
5
1
637
228264195
228264832
0.000000e+00
822.0
16
TraesCS2A01G260100
chr6D
87.709
716
75
12
1
710
139317768
139318476
0.000000e+00
822.0
17
TraesCS2A01G260100
chr5D
78.659
164
24
11
628
786
502076917
502077074
1.000000e-16
99.0
18
TraesCS2A01G260100
chr5D
96.970
33
1
0
1860
1892
30425285
30425253
6.100000e-04
56.5
19
TraesCS2A01G260100
chr5D
100.000
30
0
0
1864
1893
525666258
525666229
6.100000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G260100
chr2A
409638606
409642972
4366
False
8065.00
8065
100.000
1
4367
1
chr2A.!!$F1
4366
1
TraesCS2A01G260100
chr2A
749805776
749806565
789
True
935.00
935
88.221
1
786
1
chr2A.!!$R1
785
2
TraesCS2A01G260100
chr2B
390114850
390118440
3590
True
2804.00
5478
91.898
784
4367
2
chr2B.!!$R1
3583
3
TraesCS2A01G260100
chr2B
390143717
390144590
873
True
600.15
1129
94.348
784
1670
2
chr2B.!!$R2
886
4
TraesCS2A01G260100
chr2D
321911500
321915040
3540
True
2769.00
4538
93.216
784
4367
2
chr2D.!!$R1
3583
5
TraesCS2A01G260100
chr6B
716924887
716925595
708
False
856.00
856
88.592
1
703
1
chr6B.!!$F1
702
6
TraesCS2A01G260100
chr4D
202359280
202360067
787
True
845.00
845
86.198
1
786
1
chr4D.!!$R1
785
7
TraesCS2A01G260100
chr5A
561668887
561669546
659
True
841.00
841
89.728
12
670
1
chr5A.!!$R1
658
8
TraesCS2A01G260100
chr4A
73150919
73151699
780
True
837.00
837
86.150
12
791
1
chr4A.!!$R1
779
9
TraesCS2A01G260100
chr3A
574258240
574258908
668
True
832.00
832
89.169
1
670
1
chr3A.!!$R1
669
10
TraesCS2A01G260100
chr5B
478767504
478768290
786
False
826.00
826
85.804
1
786
1
chr5B.!!$F1
785
11
TraesCS2A01G260100
chr7B
228264195
228264832
637
False
822.00
822
90.000
1
637
1
chr7B.!!$F1
636
12
TraesCS2A01G260100
chr6D
139317768
139318476
708
False
822.00
822
87.709
1
710
1
chr6D.!!$F1
709
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
90
93
0.767375
AGGTTCAGAAGGCTTGCAGA
59.233
50.000
3.46
0.0
0.00
4.26
F
762
784
1.048601
CGCTATTTCTAGCCCTGGGA
58.951
55.000
19.27
0.0
46.41
4.37
F
812
834
1.198154
CGCGTTTTTCTTTTGCGGC
59.802
52.632
0.00
0.0
44.65
6.53
F
1162
1204
1.271707
CCGACCCTCTCTATCTCTCCC
60.272
61.905
0.00
0.0
0.00
4.30
F
2694
2742
0.549902
TCCAGGGAAGGGCTTGATGA
60.550
55.000
0.00
0.0
0.00
2.92
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1358
1400
1.153147
GGGATCCCCGAAGAACAGC
60.153
63.158
21.42
0.00
32.13
4.40
R
2125
2173
0.401738
CCTCAACCTCTGGGCTTTCA
59.598
55.000
0.00
0.00
35.63
2.69
R
2389
2437
1.275291
TGCTTCCAAGGACTTCTACCG
59.725
52.381
0.00
0.00
0.00
4.02
R
3119
3167
3.570638
CGATGCCTTCAGCGCTGG
61.571
66.667
35.36
22.02
45.29
4.85
R
4102
4156
0.389817
TGACGGCGAAATCTGTCCAG
60.390
55.000
16.62
0.00
40.69
3.86
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
69
72
1.032014
GCAAGAACTCCCACTTTGCA
58.968
50.000
2.93
0.00
0.00
4.08
79
82
2.031120
CCCACTTTGCAAAGGTTCAGA
58.969
47.619
35.65
3.60
40.31
3.27
90
93
0.767375
AGGTTCAGAAGGCTTGCAGA
59.233
50.000
3.46
0.00
0.00
4.26
117
120
2.625823
CGAGCGGGCATTTGGTGTT
61.626
57.895
0.00
0.00
0.00
3.32
183
186
5.209944
GGTCGAAAGATCAAATGTGAGAC
57.790
43.478
0.00
0.00
45.19
3.36
210
215
2.486982
GACTTGCTGTGTCATCTTGCAT
59.513
45.455
0.00
0.00
34.80
3.96
305
310
2.305927
CCCAAGTTGATCACCACCTACT
59.694
50.000
3.87
0.00
0.00
2.57
372
378
1.677576
CACTGGTGCATCAACAACTGT
59.322
47.619
0.00
0.00
39.68
3.55
426
437
2.886124
GCAACGCCTAGCTCGACC
60.886
66.667
9.18
0.00
0.00
4.79
510
523
7.680442
TTCCGTTGATTTTCTGTGATGAATA
57.320
32.000
0.00
0.00
0.00
1.75
593
610
2.543848
TGATCAATTTGCGCCGATAGTC
59.456
45.455
4.18
0.00
0.00
2.59
623
640
4.927978
TTGTGTCGAAAATGGGTTGAAT
57.072
36.364
0.00
0.00
0.00
2.57
626
643
5.309638
TGTGTCGAAAATGGGTTGAATAGA
58.690
37.500
0.00
0.00
0.00
1.98
651
668
1.460273
AATTTGCGCCGAAAGTGGGT
61.460
50.000
4.18
0.00
0.00
4.51
671
689
1.605453
GAAATCGGTGCCTGGGGTA
59.395
57.895
0.00
0.00
0.00
3.69
697
716
2.045926
GCGGTGGCTGGAATCAGT
60.046
61.111
0.00
0.00
42.78
3.41
704
723
1.078143
GCTGGAATCAGTTCGCCCT
60.078
57.895
0.00
0.00
42.78
5.19
734
753
1.990160
TTTTCCTGTCGGTGCACCCT
61.990
55.000
29.95
0.00
0.00
4.34
762
784
1.048601
CGCTATTTCTAGCCCTGGGA
58.951
55.000
19.27
0.00
46.41
4.37
763
785
1.416401
CGCTATTTCTAGCCCTGGGAA
59.584
52.381
19.27
0.75
46.41
3.97
768
790
1.580059
TTCTAGCCCTGGGAACGAAT
58.420
50.000
19.27
0.00
0.00
3.34
780
802
2.093447
GGGAACGAATGAGTGGAGATGT
60.093
50.000
0.00
0.00
0.00
3.06
794
816
4.153655
GTGGAGATGTTCTTAAAACGACCC
59.846
45.833
0.00
0.00
0.00
4.46
812
834
1.198154
CGCGTTTTTCTTTTGCGGC
59.802
52.632
0.00
0.00
44.65
6.53
823
845
3.146066
TCTTTTGCGGCTGTTCTAACAT
58.854
40.909
0.00
0.00
38.41
2.71
918
950
7.013369
GCCGAAAAAGAATCATAGTAGGGATTT
59.987
37.037
2.42
0.00
34.06
2.17
944
976
2.047274
TGCGCTCGAGAAAAGGGG
60.047
61.111
18.75
0.00
0.00
4.79
1037
1071
1.792757
AATCCAGGCCCAACAGCTGA
61.793
55.000
23.35
0.00
0.00
4.26
1078
1116
1.900545
CGTCTTCCTCCTTGGGGGTC
61.901
65.000
5.35
0.00
36.20
4.46
1160
1202
2.943036
ACCGACCCTCTCTATCTCTC
57.057
55.000
0.00
0.00
0.00
3.20
1161
1203
1.422402
ACCGACCCTCTCTATCTCTCC
59.578
57.143
0.00
0.00
0.00
3.71
1162
1204
1.271707
CCGACCCTCTCTATCTCTCCC
60.272
61.905
0.00
0.00
0.00
4.30
1222
1264
6.069556
GGGTTAGGAATTAGGAGACCTTTCTT
60.070
42.308
0.00
0.00
34.61
2.52
1248
1290
6.258947
GGTCGGATTCTAGATTTCTCTTTTGG
59.741
42.308
0.00
0.00
32.66
3.28
1358
1400
2.866156
TGCCTGATTCTTCTTTATCGCG
59.134
45.455
0.00
0.00
0.00
5.87
1359
1401
2.348966
GCCTGATTCTTCTTTATCGCGC
60.349
50.000
0.00
0.00
0.00
6.86
1670
1712
1.878656
CTCGGTGTCCAGGAGTCACC
61.879
65.000
16.43
16.43
45.46
4.02
1966
2014
4.020485
AGGGTTGTACAGGACTATGACAAC
60.020
45.833
7.49
7.49
45.81
3.32
2121
2169
3.449737
CCGGGTGAGATCTTACCTGTTAA
59.550
47.826
32.58
0.00
42.27
2.01
2125
2173
6.415573
GGGTGAGATCTTACCTGTTAATTGT
58.584
40.000
29.74
0.00
39.04
2.71
2207
2255
2.344592
TCAGGAAGTTTAAGGGAGCCA
58.655
47.619
0.00
0.00
0.00
4.75
2389
2437
8.137437
TCACCTGAATTTGAAGATTTTGAGAAC
58.863
33.333
0.00
0.00
0.00
3.01
2592
2640
2.432300
CCCCGGCGAGTTCTGGTAT
61.432
63.158
9.30
0.00
0.00
2.73
2694
2742
0.549902
TCCAGGGAAGGGCTTGATGA
60.550
55.000
0.00
0.00
0.00
2.92
2863
2911
2.473235
GAGCTCTGTTTTGTCGACTGAC
59.527
50.000
17.92
12.53
45.71
3.51
2904
2952
0.744771
GGGACCGAGGACAAAGATGC
60.745
60.000
0.00
0.00
0.00
3.91
2905
2953
1.084370
GGACCGAGGACAAAGATGCG
61.084
60.000
0.00
0.00
0.00
4.73
2966
3014
1.735920
GAGACAGTGCAGGTGAGCG
60.736
63.158
2.98
0.00
37.31
5.03
3048
3096
3.253188
TGCATTGTGTCTAACTGCCTTTC
59.747
43.478
0.00
0.00
31.89
2.62
3071
3119
5.105310
TCCTTACATTCTTCAGGTCAGCTAC
60.105
44.000
0.00
0.00
0.00
3.58
3146
3194
3.797039
CTGAAGGCATCGAATGGACTTA
58.203
45.455
3.50
0.00
0.00
2.24
3175
3223
4.400251
AGTCGTCATTAATCCCGTTGTCTA
59.600
41.667
3.89
0.00
0.00
2.59
3352
3402
6.435430
TGTGATGGCTTAACATGATACAAC
57.565
37.500
0.00
0.00
0.00
3.32
3429
3480
3.456280
TGTGCTTTGCCAAATGAACTTC
58.544
40.909
0.00
0.00
0.00
3.01
3440
3491
6.838090
TGCCAAATGAACTTCATCCCATATAA
59.162
34.615
4.70
0.00
35.76
0.98
3524
3575
2.289010
TGTGATGCAGTGTACTGGTCTG
60.289
50.000
13.41
0.00
43.94
3.51
3541
3592
4.274950
TGGTCTGCTACTTAAAACTGTTGC
59.725
41.667
0.00
0.00
35.97
4.17
3554
3605
0.746063
CTGTTGCTGCCTTTTGTGGA
59.254
50.000
0.00
0.00
0.00
4.02
3586
3637
4.384056
TGCAAGGAGCTATAGAGAAATGC
58.616
43.478
3.21
8.39
45.94
3.56
3664
3715
2.419673
TGGAGATTTATGTGCAGTTGCG
59.580
45.455
0.00
0.00
45.83
4.85
3670
3721
1.295357
TATGTGCAGTTGCGGTTCGG
61.295
55.000
0.00
0.00
45.83
4.30
3671
3722
3.276846
GTGCAGTTGCGGTTCGGT
61.277
61.111
0.00
0.00
45.83
4.69
3672
3723
2.515057
TGCAGTTGCGGTTCGGTT
60.515
55.556
0.00
0.00
45.83
4.44
3673
3724
2.251371
GCAGTTGCGGTTCGGTTC
59.749
61.111
0.00
0.00
0.00
3.62
3674
3725
2.549282
CAGTTGCGGTTCGGTTCG
59.451
61.111
0.00
0.00
0.00
3.95
3675
3726
1.952133
CAGTTGCGGTTCGGTTCGA
60.952
57.895
0.00
0.00
0.00
3.71
3676
3727
1.227321
AGTTGCGGTTCGGTTCGAA
60.227
52.632
0.00
0.00
43.75
3.71
3815
3869
0.976641
TATTATGCGCTAGCCTGCCT
59.023
50.000
9.73
3.38
44.33
4.75
3816
3870
0.976641
ATTATGCGCTAGCCTGCCTA
59.023
50.000
9.73
2.36
44.33
3.93
3817
3871
0.318441
TTATGCGCTAGCCTGCCTAG
59.682
55.000
9.73
0.00
45.26
3.02
3822
3876
3.146182
CTAGCCTGCCTAGCCCTG
58.854
66.667
0.00
0.00
37.34
4.45
3823
3877
3.164269
TAGCCTGCCTAGCCCTGC
61.164
66.667
0.00
0.00
0.00
4.85
3824
3878
3.703513
TAGCCTGCCTAGCCCTGCT
62.704
63.158
0.00
0.00
43.41
4.24
3849
3903
4.653341
AGATATTGAGGGTGAGAGAACCTG
59.347
45.833
0.00
0.00
40.35
4.00
3857
3911
3.526534
GGTGAGAGAACCTGCATAGAAC
58.473
50.000
0.00
0.00
37.24
3.01
4015
4069
4.261867
CGTGGGCTGCTGTAACAGTATATA
60.262
45.833
0.00
0.00
39.96
0.86
4016
4070
5.566826
CGTGGGCTGCTGTAACAGTATATAT
60.567
44.000
0.00
0.00
39.96
0.86
4027
4081
9.723447
CTGTAACAGTATATATGATTAGAGCGG
57.277
37.037
0.00
0.00
0.00
5.52
4028
4082
9.239551
TGTAACAGTATATATGATTAGAGCGGT
57.760
33.333
0.00
0.00
0.00
5.68
4131
4185
1.592400
TTCGCCGTCAGTTCCGAGAT
61.592
55.000
0.00
0.00
0.00
2.75
4139
4193
0.665835
CAGTTCCGAGATCGAGGAGG
59.334
60.000
3.31
1.49
43.02
4.30
4146
4200
0.251165
GAGATCGAGGAGGGGAGGAG
60.251
65.000
0.00
0.00
0.00
3.69
4253
4307
2.689983
CAAACAAGCTCACCTTCCAACT
59.310
45.455
0.00
0.00
0.00
3.16
4257
4311
3.073062
ACAAGCTCACCTTCCAACTGTAT
59.927
43.478
0.00
0.00
0.00
2.29
4261
4344
3.118592
GCTCACCTTCCAACTGTATAGCT
60.119
47.826
0.00
0.00
0.00
3.32
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
69
72
1.959282
CTGCAAGCCTTCTGAACCTTT
59.041
47.619
0.00
0.00
0.00
3.11
79
82
2.165998
GACATCCTTTCTGCAAGCCTT
58.834
47.619
0.00
0.00
0.00
4.35
90
93
2.125106
GCCCGCTCGACATCCTTT
60.125
61.111
0.00
0.00
0.00
3.11
117
120
5.724328
ACAACAGCAAATCGAGATTAGAGA
58.276
37.500
0.00
0.00
0.00
3.10
210
215
4.053983
GCTCGCTCTCAATGATCATGTTA
58.946
43.478
9.46
0.00
0.00
2.41
372
378
0.325577
TGCTCCACCAGATCCTGCTA
60.326
55.000
0.00
0.00
0.00
3.49
476
487
7.542130
ACAGAAAATCAACGGAAATCAAATAGC
59.458
33.333
0.00
0.00
0.00
2.97
489
502
8.791605
CACATTATTCATCACAGAAAATCAACG
58.208
33.333
0.00
0.00
0.00
4.10
543
560
1.143183
ATATTCGGCGTGCTTCGGT
59.857
52.632
6.85
0.00
40.26
4.69
593
610
3.595709
TTTTCGACACAAAACTAGCCG
57.404
42.857
0.00
0.00
0.00
5.52
597
614
5.357314
TCAACCCATTTTCGACACAAAACTA
59.643
36.000
0.00
0.00
0.00
2.24
599
616
4.425520
TCAACCCATTTTCGACACAAAAC
58.574
39.130
0.00
0.00
0.00
2.43
603
620
5.309638
TCTATTCAACCCATTTTCGACACA
58.690
37.500
0.00
0.00
0.00
3.72
623
640
1.752694
GGCGCAAATTGGCCCTCTA
60.753
57.895
10.83
0.00
43.64
2.43
651
668
2.267642
CCCAGGCACCGATTTCGA
59.732
61.111
0.67
0.00
43.02
3.71
684
702
1.377202
GGCGAACTGATTCCAGCCA
60.377
57.895
0.00
0.00
44.16
4.75
693
712
2.347490
GGCTTGAGGGCGAACTGA
59.653
61.111
0.00
0.00
0.00
3.41
721
740
3.625897
CCTGAGGGTGCACCGACA
61.626
66.667
29.08
26.56
46.96
4.35
722
741
4.394712
CCCTGAGGGTGCACCGAC
62.395
72.222
29.08
23.69
46.96
4.79
734
753
1.396607
TAGAAATAGCGCCGCCCTGA
61.397
55.000
4.98
0.00
0.00
3.86
762
784
4.543590
AGAACATCTCCACTCATTCGTT
57.456
40.909
0.00
0.00
0.00
3.85
763
785
4.543590
AAGAACATCTCCACTCATTCGT
57.456
40.909
0.00
0.00
0.00
3.85
768
790
5.694910
GTCGTTTTAAGAACATCTCCACTCA
59.305
40.000
0.00
0.00
0.00
3.41
794
816
1.198154
GCCGCAAAAGAAAAACGCG
59.802
52.632
3.53
3.53
45.25
6.01
802
824
2.566913
TGTTAGAACAGCCGCAAAAGA
58.433
42.857
0.00
0.00
34.30
2.52
918
950
1.153765
CTCGAGCGCACTTGGATGA
60.154
57.895
11.47
0.00
0.00
2.92
944
976
3.437049
GTGTGTCCAGCTTTGGATAGAAC
59.563
47.826
0.00
0.00
40.51
3.01
1053
1087
2.593956
AAGGAGGAAGACGGGGCAC
61.594
63.158
0.00
0.00
0.00
5.01
1078
1116
2.335712
GGCTTTGCCCGTGGAAGAG
61.336
63.158
0.00
0.00
44.06
2.85
1161
1203
4.150454
AGGGGAGGCGGAGAGAGG
62.150
72.222
0.00
0.00
0.00
3.69
1162
1204
2.520741
GAGGGGAGGCGGAGAGAG
60.521
72.222
0.00
0.00
0.00
3.20
1222
1264
6.546428
AAAGAGAAATCTAGAATCCGACCA
57.454
37.500
0.00
0.00
0.00
4.02
1292
1334
4.467795
TCTGAAATCTAAGCAGCTGGTACT
59.532
41.667
20.51
7.13
0.00
2.73
1358
1400
1.153147
GGGATCCCCGAAGAACAGC
60.153
63.158
21.42
0.00
32.13
4.40
1359
1401
1.527370
GGGGATCCCCGAAGAACAG
59.473
63.158
34.54
0.00
46.66
3.16
1810
1852
2.145397
AGCTCCTTGATCTCCGTACA
57.855
50.000
0.00
0.00
0.00
2.90
2099
2147
1.486211
ACAGGTAAGATCTCACCCGG
58.514
55.000
11.80
7.08
35.25
5.73
2121
2169
2.158475
TCAACCTCTGGGCTTTCACAAT
60.158
45.455
0.00
0.00
35.63
2.71
2125
2173
0.401738
CCTCAACCTCTGGGCTTTCA
59.598
55.000
0.00
0.00
35.63
2.69
2389
2437
1.275291
TGCTTCCAAGGACTTCTACCG
59.725
52.381
0.00
0.00
0.00
4.02
2578
2626
5.054477
TGCTTTATAATACCAGAACTCGCC
58.946
41.667
0.00
0.00
0.00
5.54
2592
2640
6.183360
GCTGATGCCTAACCTTTGCTTTATAA
60.183
38.462
0.00
0.00
0.00
0.98
2694
2742
7.455058
TGTAGGGATTGTTGTAAATGTACTGT
58.545
34.615
0.00
0.00
0.00
3.55
3007
3055
5.761165
TGCATATGATTGACCTTGTGATG
57.239
39.130
6.97
0.00
0.00
3.07
3048
3096
4.213564
AGCTGACCTGAAGAATGTAAGG
57.786
45.455
0.00
0.00
35.82
2.69
3071
3119
3.845178
TGTCGCTGGTATGTAGACTTTG
58.155
45.455
0.00
0.00
33.40
2.77
3119
3167
3.570638
CGATGCCTTCAGCGCTGG
61.571
66.667
35.36
22.02
45.29
4.85
3146
3194
4.583489
ACGGGATTAATGACGACTAGATGT
59.417
41.667
13.46
0.00
0.00
3.06
3175
3223
9.765795
GTTTATCCAGCTATATAACTGAACTGT
57.234
33.333
13.63
0.00
35.90
3.55
3429
3480
5.078949
TGGATGGCTTTGTTATATGGGATG
58.921
41.667
0.00
0.00
0.00
3.51
3440
3491
4.937015
GCATGTAAAAATGGATGGCTTTGT
59.063
37.500
0.00
0.00
0.00
2.83
3524
3575
3.253432
AGGCAGCAACAGTTTTAAGTAGC
59.747
43.478
0.00
0.00
0.00
3.58
3554
3605
1.493871
AGCTCCTTGCAATATCCTGCT
59.506
47.619
0.00
1.75
45.94
4.24
3586
3637
6.073548
TGCAAAGTTTAAACCACAAAACACAG
60.074
34.615
14.72
0.00
37.92
3.66
3664
3715
3.682858
TCTTCATCATTTCGAACCGAACC
59.317
43.478
0.00
0.00
45.64
3.62
3678
3729
6.974048
CGCCAAATAAACAATGATCTTCATCA
59.026
34.615
0.00
0.00
43.45
3.07
3679
3730
6.974622
ACGCCAAATAAACAATGATCTTCATC
59.025
34.615
0.00
0.00
35.76
2.92
3684
3735
6.266168
TCAACGCCAAATAAACAATGATCT
57.734
33.333
0.00
0.00
0.00
2.75
3824
3878
4.651503
GGTTCTCTCACCCTCAATATCTGA
59.348
45.833
0.00
0.00
0.00
3.27
3849
3903
1.474143
GCTGGGACCAGAGTTCTATGC
60.474
57.143
22.03
0.12
46.30
3.14
3857
3911
1.153208
GCATCTGCTGGGACCAGAG
60.153
63.158
22.03
14.95
46.30
3.35
3906
3960
8.383318
TGCAAAGCTGAATTATATCTACCTTC
57.617
34.615
0.00
0.00
0.00
3.46
3907
3961
8.930846
ATGCAAAGCTGAATTATATCTACCTT
57.069
30.769
0.00
0.00
0.00
3.50
4015
4069
6.902771
ATCTGTTACTACCGCTCTAATCAT
57.097
37.500
0.00
0.00
0.00
2.45
4016
4070
6.710597
AATCTGTTACTACCGCTCTAATCA
57.289
37.500
0.00
0.00
0.00
2.57
4027
4081
3.802685
CGCCTTGCCTAATCTGTTACTAC
59.197
47.826
0.00
0.00
0.00
2.73
4028
4082
3.740141
GCGCCTTGCCTAATCTGTTACTA
60.740
47.826
0.00
0.00
37.76
1.82
4029
4083
2.906354
CGCCTTGCCTAATCTGTTACT
58.094
47.619
0.00
0.00
0.00
2.24
4102
4156
0.389817
TGACGGCGAAATCTGTCCAG
60.390
55.000
16.62
0.00
40.69
3.86
4131
4185
3.430497
CCCTCCTCCCCTCCTCGA
61.430
72.222
0.00
0.00
0.00
4.04
4139
4193
1.463018
ATGATCTGGCCCTCCTCCC
60.463
63.158
0.00
0.00
0.00
4.30
4146
4200
2.203451
CCCTGCATGATCTGGCCC
60.203
66.667
0.00
0.00
0.00
5.80
4151
4205
1.129917
CCAGACTCCCTGCATGATCT
58.870
55.000
0.00
0.00
41.57
2.75
4196
4250
2.114411
TTTGGTGGAGGCCGGAAC
59.886
61.111
5.05
0.00
0.00
3.62
4253
4307
1.613925
GATCCCTCGTGCAGCTATACA
59.386
52.381
0.00
0.00
0.00
2.29
4257
4311
2.420138
GAGATCCCTCGTGCAGCTA
58.580
57.895
0.00
0.00
0.00
3.32
4298
4381
3.136123
CGGGCATGAACAGCAGGG
61.136
66.667
0.00
0.00
0.00
4.45
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.