Multiple sequence alignment - TraesCS2A01G259800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G259800 chr2A 100.000 1589 0 0 1 1589 408086964 408088552 0.000000e+00 2935.0
1 TraesCS2A01G259800 chr2A 100.000 575 0 0 1921 2495 408088884 408089458 0.000000e+00 1062.0
2 TraesCS2A01G259800 chr2D 95.131 1602 45 10 1 1583 322858504 322856917 0.000000e+00 2495.0
3 TraesCS2A01G259800 chr2D 92.235 425 31 1 2073 2495 322852592 322852168 3.550000e-168 601.0
4 TraesCS2A01G259800 chr2B 94.803 1597 45 6 1 1583 390805730 390804158 0.000000e+00 2455.0
5 TraesCS2A01G259800 chr2B 90.672 268 23 1 2230 2495 390801572 390801305 3.050000e-94 355.0
6 TraesCS2A01G259800 chr2B 93.333 105 7 0 2080 2184 390801676 390801572 3.320000e-34 156.0
7 TraesCS2A01G259800 chr2B 97.297 37 0 1 387 423 390805774 390805809 7.450000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G259800 chr2A 408086964 408089458 2494 False 1998.500000 2935 100.000 1 2495 2 chr2A.!!$F1 2494
1 TraesCS2A01G259800 chr2D 322856917 322858504 1587 True 2495.000000 2495 95.131 1 1583 1 chr2D.!!$R2 1582
2 TraesCS2A01G259800 chr2B 390801305 390805730 4425 True 988.666667 2455 92.936 1 2495 3 chr2B.!!$R1 2494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 850 1.414866 TTGTGCTGCACTCCCACCTA 61.415 55.0 30.43 7.66 35.11 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 4210 0.101219 GAGGCGGATGGCATTTTGAC 59.899 55.0 0.0 0.0 46.16 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.567169 TGCACCTACACTTCTACATGCT 59.433 45.455 0.00 0.00 33.03 3.79
27 28 3.190874 GCACCTACACTTCTACATGCTC 58.809 50.000 0.00 0.00 0.00 4.26
28 29 3.439293 CACCTACACTTCTACATGCTCG 58.561 50.000 0.00 0.00 0.00 5.03
29 30 3.128764 CACCTACACTTCTACATGCTCGA 59.871 47.826 0.00 0.00 0.00 4.04
30 31 3.128938 ACCTACACTTCTACATGCTCGAC 59.871 47.826 0.00 0.00 0.00 4.20
31 32 3.128764 CCTACACTTCTACATGCTCGACA 59.871 47.826 0.00 0.00 0.00 4.35
32 33 3.876274 ACACTTCTACATGCTCGACAT 57.124 42.857 0.00 0.00 40.66 3.06
33 34 3.775202 ACACTTCTACATGCTCGACATC 58.225 45.455 0.00 0.00 36.64 3.06
34 35 3.193479 ACACTTCTACATGCTCGACATCA 59.807 43.478 0.00 0.00 36.64 3.07
35 36 4.142071 ACACTTCTACATGCTCGACATCAT 60.142 41.667 0.00 0.00 36.64 2.45
117 127 4.222847 CCGGGGAGCTACTTCGGC 62.223 72.222 16.03 0.00 34.17 5.54
521 531 1.718757 GGCATCAGGAACATGTCGGC 61.719 60.000 0.00 0.00 0.00 5.54
576 586 3.004315 CCATTGTCGCCACTTGTAAAACT 59.996 43.478 0.00 0.00 0.00 2.66
577 587 3.955771 TTGTCGCCACTTGTAAAACTC 57.044 42.857 0.00 0.00 0.00 3.01
587 597 6.426937 GCCACTTGTAAAACTCAACATCTCTA 59.573 38.462 0.00 0.00 0.00 2.43
632 642 3.006003 GGTTTTGCCGGTTTTAGGATCAA 59.994 43.478 1.90 0.00 0.00 2.57
649 665 4.754114 GGATCAATCGATTTGGGAGAGAAG 59.246 45.833 8.21 0.00 35.92 2.85
681 697 1.990060 TAGCTTTCAGGCCGAGGCT 60.990 57.895 14.33 20.64 41.60 4.58
729 745 3.008330 AGTACGTGATCAACTCGCTACT 58.992 45.455 0.00 5.52 38.77 2.57
730 746 4.186926 AGTACGTGATCAACTCGCTACTA 58.813 43.478 0.00 0.00 38.77 1.82
731 747 3.402058 ACGTGATCAACTCGCTACTAC 57.598 47.619 0.00 0.00 38.77 2.73
732 748 2.222976 ACGTGATCAACTCGCTACTACG 60.223 50.000 0.00 0.00 38.77 3.51
834 850 1.414866 TTGTGCTGCACTCCCACCTA 61.415 55.000 30.43 7.66 35.11 3.08
1059 1088 1.296715 GGTGCTCATCGTCAAGGGT 59.703 57.895 0.00 0.00 0.00 4.34
1074 1103 4.875713 GGTGCCGGCCCGATGAAT 62.876 66.667 26.77 0.00 0.00 2.57
1081 1110 2.808206 GGCCCGATGAATCCGTCCT 61.808 63.158 0.00 0.00 0.00 3.85
1163 1192 2.948720 GCTCCTCGTCCAAGCAGGT 61.949 63.158 0.00 0.00 39.02 4.00
1164 1193 1.079543 CTCCTCGTCCAAGCAGGTG 60.080 63.158 0.00 0.00 39.02 4.00
1567 1597 7.384115 CGTTAGCTTGGATTAATTCCTCGAATA 59.616 37.037 0.00 0.00 45.68 1.75
1583 1613 3.760151 TCGAATAGTTTGAGAGAACCGGA 59.240 43.478 9.46 0.00 0.00 5.14
1584 1614 4.401519 TCGAATAGTTTGAGAGAACCGGAT 59.598 41.667 9.46 0.00 0.00 4.18
1586 1616 5.915758 CGAATAGTTTGAGAGAACCGGATAG 59.084 44.000 9.46 0.00 0.00 2.08
1587 1617 6.459848 CGAATAGTTTGAGAGAACCGGATAGT 60.460 42.308 9.46 0.00 0.00 2.12
1588 1618 4.457834 AGTTTGAGAGAACCGGATAGTG 57.542 45.455 9.46 0.00 0.00 2.74
1970 3721 6.536447 TCTTAAACCTAACCCGACTTTGAAT 58.464 36.000 0.00 0.00 0.00 2.57
2057 3993 1.379527 CCCAAACGGATACAAGGAGC 58.620 55.000 0.00 0.00 0.00 4.70
2078 4014 3.434984 GCAGAAGGAGAGCAACAAACTAG 59.565 47.826 0.00 0.00 0.00 2.57
2130 4148 2.602257 TGACCATCAACGCTCCATAG 57.398 50.000 0.00 0.00 0.00 2.23
2131 4149 1.221414 GACCATCAACGCTCCATAGC 58.779 55.000 0.00 0.00 45.86 2.97
2148 4166 2.575805 AGCAGGAAAAGGTGAAGGAG 57.424 50.000 0.00 0.00 0.00 3.69
2165 4183 4.509737 GCCGCTGGAGGACGTACC 62.510 72.222 0.00 0.00 39.35 3.34
2166 4184 3.066190 CCGCTGGAGGACGTACCA 61.066 66.667 0.00 0.94 42.04 3.25
2176 4194 1.084289 GGACGTACCAGCCATTGTTC 58.916 55.000 0.00 0.00 38.79 3.18
2183 4201 1.314534 CCAGCCATTGTTCGCATCCA 61.315 55.000 0.00 0.00 0.00 3.41
2184 4202 0.742505 CAGCCATTGTTCGCATCCAT 59.257 50.000 0.00 0.00 0.00 3.41
2185 4203 1.135527 CAGCCATTGTTCGCATCCATT 59.864 47.619 0.00 0.00 0.00 3.16
2186 4204 1.135527 AGCCATTGTTCGCATCCATTG 59.864 47.619 0.00 0.00 0.00 2.82
2187 4205 1.134753 GCCATTGTTCGCATCCATTGA 59.865 47.619 0.00 0.00 0.00 2.57
2188 4206 2.801063 CCATTGTTCGCATCCATTGAC 58.199 47.619 0.00 0.00 0.00 3.18
2189 4207 2.164017 CCATTGTTCGCATCCATTGACA 59.836 45.455 0.00 0.00 0.00 3.58
2190 4208 3.431856 CATTGTTCGCATCCATTGACAG 58.568 45.455 0.00 0.00 0.00 3.51
2191 4209 2.183478 TGTTCGCATCCATTGACAGT 57.817 45.000 0.00 0.00 0.00 3.55
2192 4210 1.805943 TGTTCGCATCCATTGACAGTG 59.194 47.619 0.00 0.00 0.00 3.66
2193 4211 1.806542 GTTCGCATCCATTGACAGTGT 59.193 47.619 0.00 0.00 0.00 3.55
2194 4212 1.725641 TCGCATCCATTGACAGTGTC 58.274 50.000 16.68 16.68 0.00 3.67
2195 4213 1.001860 TCGCATCCATTGACAGTGTCA 59.998 47.619 22.06 22.06 41.09 3.58
2205 4223 3.921119 TGACAGTGTCAAAATGCCATC 57.079 42.857 23.55 0.00 39.78 3.51
2206 4224 2.557924 TGACAGTGTCAAAATGCCATCC 59.442 45.455 23.55 0.00 39.78 3.51
2207 4225 1.541147 ACAGTGTCAAAATGCCATCCG 59.459 47.619 0.00 0.00 0.00 4.18
2208 4226 0.527565 AGTGTCAAAATGCCATCCGC 59.472 50.000 0.00 0.00 38.31 5.54
2209 4227 0.458370 GTGTCAAAATGCCATCCGCC 60.458 55.000 0.00 0.00 36.24 6.13
2210 4228 0.611618 TGTCAAAATGCCATCCGCCT 60.612 50.000 0.00 0.00 36.24 5.52
2211 4229 0.101219 GTCAAAATGCCATCCGCCTC 59.899 55.000 0.00 0.00 36.24 4.70
2212 4230 1.037030 TCAAAATGCCATCCGCCTCC 61.037 55.000 0.00 0.00 36.24 4.30
2213 4231 1.000233 AAAATGCCATCCGCCTCCA 60.000 52.632 0.00 0.00 36.24 3.86
2214 4232 1.322538 AAAATGCCATCCGCCTCCAC 61.323 55.000 0.00 0.00 36.24 4.02
2215 4233 3.721370 AATGCCATCCGCCTCCACC 62.721 63.158 0.00 0.00 36.24 4.61
2218 4236 4.489771 CCATCCGCCTCCACCACC 62.490 72.222 0.00 0.00 0.00 4.61
2219 4237 3.716195 CATCCGCCTCCACCACCA 61.716 66.667 0.00 0.00 0.00 4.17
2220 4238 2.933287 ATCCGCCTCCACCACCAA 60.933 61.111 0.00 0.00 0.00 3.67
2221 4239 2.534396 ATCCGCCTCCACCACCAAA 61.534 57.895 0.00 0.00 0.00 3.28
2222 4240 2.484287 ATCCGCCTCCACCACCAAAG 62.484 60.000 0.00 0.00 0.00 2.77
2223 4241 2.429930 CGCCTCCACCACCAAAGA 59.570 61.111 0.00 0.00 0.00 2.52
2224 4242 1.228124 CGCCTCCACCACCAAAGAA 60.228 57.895 0.00 0.00 0.00 2.52
2225 4243 1.237285 CGCCTCCACCACCAAAGAAG 61.237 60.000 0.00 0.00 0.00 2.85
2226 4244 0.110486 GCCTCCACCACCAAAGAAGA 59.890 55.000 0.00 0.00 0.00 2.87
2227 4245 1.272147 GCCTCCACCACCAAAGAAGAT 60.272 52.381 0.00 0.00 0.00 2.40
2228 4246 2.819348 GCCTCCACCACCAAAGAAGATT 60.819 50.000 0.00 0.00 0.00 2.40
2258 4276 3.998797 CCCTGGATCAGAGGGCAT 58.001 61.111 14.54 0.00 44.02 4.40
2260 4278 1.370437 CCTGGATCAGAGGGCATCG 59.630 63.158 0.00 0.00 32.44 3.84
2265 4283 3.451556 ATCAGAGGGCATCGCACCG 62.452 63.158 0.00 0.00 28.43 4.94
2294 4312 2.446435 GTGGAGAAGCTCAGAGAGAGT 58.554 52.381 0.00 0.00 46.47 3.24
2298 4316 2.612212 GAGAAGCTCAGAGAGAGTACGG 59.388 54.545 0.00 0.00 46.47 4.02
2304 4322 3.815809 CTCAGAGAGAGTACGGAAGGAT 58.184 50.000 0.00 0.00 39.62 3.24
2324 4342 0.482446 ACAAGAGGCCCAACCAATGA 59.518 50.000 0.00 0.00 43.14 2.57
2325 4343 0.890683 CAAGAGGCCCAACCAATGAC 59.109 55.000 0.00 0.00 43.14 3.06
2363 4381 1.609208 CCACCTCACCACAAGGAAAG 58.391 55.000 0.00 0.00 37.35 2.62
2373 4391 2.586425 CACAAGGAAAGCCCAAGAAGA 58.414 47.619 0.00 0.00 37.41 2.87
2377 4395 3.814504 AGGAAAGCCCAAGAAGAATCA 57.185 42.857 0.00 0.00 37.41 2.57
2382 4400 0.804989 GCCCAAGAAGAATCACCACG 59.195 55.000 0.00 0.00 0.00 4.94
2390 4408 0.038166 AGAATCACCACGCCCACAAT 59.962 50.000 0.00 0.00 0.00 2.71
2408 4428 3.565482 ACAATAAGAAGCATACATGGGCG 59.435 43.478 0.00 0.00 34.54 6.13
2420 4440 0.877071 CATGGGCGCATCAATAGGAC 59.123 55.000 14.18 0.00 0.00 3.85
2445 4465 1.227438 ACCACCAAAGACACGACCG 60.227 57.895 0.00 0.00 0.00 4.79
2447 4467 1.068417 CACCAAAGACACGACCGGA 59.932 57.895 9.46 0.00 0.00 5.14
2469 4489 6.095377 GGAAATATGAGAAACAAAGCCACAG 58.905 40.000 0.00 0.00 0.00 3.66
2486 4506 2.107141 GGACCAAGCCGGATCTCG 59.893 66.667 5.05 0.00 38.63 4.04
2490 4510 2.587194 CAAGCCGGATCTCGCCAG 60.587 66.667 5.05 0.00 37.59 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 127 2.152699 GTCGATCACTGCCGTGTCG 61.153 63.158 19.30 19.30 41.56 4.35
506 516 2.264480 CGGCCGACATGTTCCTGA 59.736 61.111 24.07 0.00 0.00 3.86
587 597 8.700439 ACCAGTACAGTATTTATTTTTGTGGT 57.300 30.769 0.00 0.00 0.00 4.16
632 642 3.024547 TCGTCTTCTCTCCCAAATCGAT 58.975 45.455 0.00 0.00 0.00 3.59
649 665 3.617538 GCTACGCACCGCATCGTC 61.618 66.667 0.00 0.00 39.79 4.20
677 693 1.339929 CGCAAGTTTTTAACCCAGCCT 59.660 47.619 0.00 0.00 0.00 4.58
681 697 1.202428 GGTGCGCAAGTTTTTAACCCA 60.202 47.619 14.00 0.00 41.68 4.51
683 699 2.390938 GAGGTGCGCAAGTTTTTAACC 58.609 47.619 14.00 5.58 41.68 2.85
834 850 1.964608 TTAGGCTGCTCGCTGCTCAT 61.965 55.000 18.02 8.99 43.37 2.90
985 1014 6.013842 CATGTACATGCGTAGGAGAATCTA 57.986 41.667 22.27 0.00 30.59 1.98
1059 1088 4.562425 GGATTCATCGGGCCGGCA 62.562 66.667 30.85 8.42 0.00 5.69
1068 1097 1.776034 GCGGCAAGGACGGATTCATC 61.776 60.000 0.00 0.00 32.98 2.92
1081 1110 4.752879 GTAGTGCTCCGGCGGCAA 62.753 66.667 23.83 3.56 41.54 4.52
1125 1154 1.995626 CCGGTTCTGGGTGAGGGAT 60.996 63.158 0.00 0.00 0.00 3.85
1567 1597 4.457834 CACTATCCGGTTCTCTCAAACT 57.542 45.455 0.00 0.00 0.00 2.66
1940 3691 7.828508 AGTCGGGTTAGGTTTAAGAATTTTT 57.171 32.000 0.00 0.00 0.00 1.94
1949 3700 8.866970 ATTAATTCAAAGTCGGGTTAGGTTTA 57.133 30.769 0.00 0.00 0.00 2.01
1996 3928 9.396022 TCTCTTTCTTTCTTCTATGTTGTTTGT 57.604 29.630 0.00 0.00 0.00 2.83
2011 3943 5.416952 TGCATCCCATTCTTCTCTTTCTTTC 59.583 40.000 0.00 0.00 0.00 2.62
2017 3949 3.359950 GGTTGCATCCCATTCTTCTCTT 58.640 45.455 2.02 0.00 0.00 2.85
2057 3993 4.887748 TCTAGTTTGTTGCTCTCCTTCTG 58.112 43.478 0.00 0.00 0.00 3.02
2130 4148 0.884514 GCTCCTTCACCTTTTCCTGC 59.115 55.000 0.00 0.00 0.00 4.85
2131 4149 1.539157 GGCTCCTTCACCTTTTCCTG 58.461 55.000 0.00 0.00 0.00 3.86
2135 4153 0.890996 CAGCGGCTCCTTCACCTTTT 60.891 55.000 0.00 0.00 0.00 2.27
2148 4166 4.509737 GGTACGTCCTCCAGCGGC 62.510 72.222 0.00 0.00 0.00 6.53
2165 4183 0.742505 ATGGATGCGAACAATGGCTG 59.257 50.000 0.00 0.00 0.00 4.85
2166 4184 1.135527 CAATGGATGCGAACAATGGCT 59.864 47.619 0.00 0.00 0.00 4.75
2176 4194 1.441738 TGACACTGTCAATGGATGCG 58.558 50.000 9.54 0.00 39.78 4.73
2185 4203 2.557924 GGATGGCATTTTGACACTGTCA 59.442 45.455 7.84 7.84 38.83 3.58
2186 4204 2.414559 CGGATGGCATTTTGACACTGTC 60.415 50.000 0.00 1.86 38.83 3.51
2187 4205 1.541147 CGGATGGCATTTTGACACTGT 59.459 47.619 0.00 0.00 38.83 3.55
2188 4206 1.733389 GCGGATGGCATTTTGACACTG 60.733 52.381 0.00 0.00 38.83 3.66
2189 4207 0.527565 GCGGATGGCATTTTGACACT 59.472 50.000 0.00 0.00 38.83 3.55
2190 4208 0.458370 GGCGGATGGCATTTTGACAC 60.458 55.000 0.00 0.00 38.83 3.67
2191 4209 0.611618 AGGCGGATGGCATTTTGACA 60.612 50.000 0.00 0.00 46.16 3.58
2192 4210 0.101219 GAGGCGGATGGCATTTTGAC 59.899 55.000 0.00 0.00 46.16 3.18
2193 4211 1.037030 GGAGGCGGATGGCATTTTGA 61.037 55.000 0.00 0.00 46.16 2.69
2194 4212 1.321805 TGGAGGCGGATGGCATTTTG 61.322 55.000 0.00 0.00 46.16 2.44
2195 4213 1.000233 TGGAGGCGGATGGCATTTT 60.000 52.632 0.00 0.00 46.16 1.82
2196 4214 1.754234 GTGGAGGCGGATGGCATTT 60.754 57.895 0.00 0.00 46.16 2.32
2197 4215 2.124151 GTGGAGGCGGATGGCATT 60.124 61.111 0.00 0.00 46.16 3.56
2198 4216 4.195334 GGTGGAGGCGGATGGCAT 62.195 66.667 0.00 0.00 46.16 4.40
2201 4219 4.489771 GGTGGTGGAGGCGGATGG 62.490 72.222 0.00 0.00 0.00 3.51
2202 4220 2.762969 TTTGGTGGTGGAGGCGGATG 62.763 60.000 0.00 0.00 0.00 3.51
2203 4221 2.484287 CTTTGGTGGTGGAGGCGGAT 62.484 60.000 0.00 0.00 0.00 4.18
2204 4222 3.172106 TTTGGTGGTGGAGGCGGA 61.172 61.111 0.00 0.00 0.00 5.54
2205 4223 2.672996 CTTTGGTGGTGGAGGCGG 60.673 66.667 0.00 0.00 0.00 6.13
2206 4224 1.228124 TTCTTTGGTGGTGGAGGCG 60.228 57.895 0.00 0.00 0.00 5.52
2207 4225 0.110486 TCTTCTTTGGTGGTGGAGGC 59.890 55.000 0.00 0.00 0.00 4.70
2208 4226 2.887151 ATCTTCTTTGGTGGTGGAGG 57.113 50.000 0.00 0.00 0.00 4.30
2209 4227 4.911390 AGTAATCTTCTTTGGTGGTGGAG 58.089 43.478 0.00 0.00 0.00 3.86
2210 4228 4.993705 AGTAATCTTCTTTGGTGGTGGA 57.006 40.909 0.00 0.00 0.00 4.02
2211 4229 6.653989 AGATAGTAATCTTCTTTGGTGGTGG 58.346 40.000 0.00 0.00 39.55 4.61
2224 4242 6.031964 TCCAGGGTGAGAAGATAGTAATCT 57.968 41.667 0.00 0.00 44.67 2.40
2225 4243 6.495181 TGATCCAGGGTGAGAAGATAGTAATC 59.505 42.308 0.00 0.00 0.00 1.75
2226 4244 6.385443 TGATCCAGGGTGAGAAGATAGTAAT 58.615 40.000 0.00 0.00 0.00 1.89
2227 4245 5.777449 TGATCCAGGGTGAGAAGATAGTAA 58.223 41.667 0.00 0.00 0.00 2.24
2228 4246 5.134509 TCTGATCCAGGGTGAGAAGATAGTA 59.865 44.000 0.00 0.00 31.51 1.82
2258 4276 2.985282 ACCTAACCGACGGTGCGA 60.985 61.111 22.53 8.34 35.34 5.10
2265 4283 0.896226 AGCTTCTCCACCTAACCGAC 59.104 55.000 0.00 0.00 0.00 4.79
2294 4312 2.037144 GGCCTCTTGTATCCTTCCGTA 58.963 52.381 0.00 0.00 0.00 4.02
2298 4316 2.644676 GTTGGGCCTCTTGTATCCTTC 58.355 52.381 4.53 0.00 0.00 3.46
2304 4322 1.707989 TCATTGGTTGGGCCTCTTGTA 59.292 47.619 4.53 0.00 38.35 2.41
2324 4342 1.359833 CATGCTTGGTGTTGCACGT 59.640 52.632 0.00 0.00 42.26 4.49
2325 4343 1.372004 CCATGCTTGGTGTTGCACG 60.372 57.895 10.48 0.00 42.26 5.34
2343 4361 0.467290 TTTCCTTGTGGTGAGGTGGC 60.467 55.000 0.00 0.00 35.71 5.01
2363 4381 0.804989 CGTGGTGATTCTTCTTGGGC 59.195 55.000 0.00 0.00 0.00 5.36
2373 4391 2.091541 CTTATTGTGGGCGTGGTGATT 58.908 47.619 0.00 0.00 0.00 2.57
2377 4395 1.821216 CTTCTTATTGTGGGCGTGGT 58.179 50.000 0.00 0.00 0.00 4.16
2382 4400 4.261741 CCATGTATGCTTCTTATTGTGGGC 60.262 45.833 0.00 0.00 0.00 5.36
2390 4408 1.134250 TGCGCCCATGTATGCTTCTTA 60.134 47.619 4.18 0.00 0.00 2.10
2408 4428 2.866762 GGTGACTTCGTCCTATTGATGC 59.133 50.000 0.00 0.00 0.00 3.91
2420 4440 1.597663 GTGTCTTTGGTGGTGACTTCG 59.402 52.381 0.00 0.00 0.00 3.79
2426 4446 1.495584 CGGTCGTGTCTTTGGTGGTG 61.496 60.000 0.00 0.00 0.00 4.17
2427 4447 1.227438 CGGTCGTGTCTTTGGTGGT 60.227 57.895 0.00 0.00 0.00 4.16
2445 4465 6.024552 TGTGGCTTTGTTTCTCATATTTCC 57.975 37.500 0.00 0.00 0.00 3.13
2447 4467 5.774690 TCCTGTGGCTTTGTTTCTCATATTT 59.225 36.000 0.00 0.00 0.00 1.40
2469 4489 2.107141 CGAGATCCGGCTTGGTCC 59.893 66.667 0.00 0.00 39.52 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.