Multiple sequence alignment - TraesCS2A01G259500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G259500 chr2A 100.000 5178 0 0 1 5178 407743618 407738441 0.000000e+00 9563.0
1 TraesCS2A01G259500 chr2A 85.185 135 20 0 1001 1135 183549660 183549794 6.990000e-29 139.0
2 TraesCS2A01G259500 chr2D 93.021 1834 66 27 1 1811 323073720 323075514 0.000000e+00 2621.0
3 TraesCS2A01G259500 chr2D 96.626 1393 21 6 2971 4345 323076770 323078154 0.000000e+00 2289.0
4 TraesCS2A01G259500 chr2D 91.051 771 24 12 1808 2553 323075594 323076344 0.000000e+00 1000.0
5 TraesCS2A01G259500 chr2D 91.818 440 36 0 4737 5176 323078563 323079002 9.530000e-172 614.0
6 TraesCS2A01G259500 chr2D 92.429 317 11 6 2635 2942 323076385 323076697 1.710000e-119 440.0
7 TraesCS2A01G259500 chr2D 91.765 255 12 2 4489 4742 323078179 323078425 3.840000e-91 346.0
8 TraesCS2A01G259500 chr2D 97.959 98 2 0 4343 4440 22958382 22958479 2.480000e-38 171.0
9 TraesCS2A01G259500 chr2D 83.704 135 22 0 1001 1135 166610516 166610382 1.510000e-25 128.0
10 TraesCS2A01G259500 chr2B 95.665 1384 39 8 2986 4354 390925436 390926813 0.000000e+00 2204.0
11 TraesCS2A01G259500 chr2B 93.219 1106 41 14 853 1951 390923168 390924246 0.000000e+00 1596.0
12 TraesCS2A01G259500 chr2B 83.716 872 52 35 1 855 390920229 390921027 0.000000e+00 741.0
13 TraesCS2A01G259500 chr2B 90.424 543 46 5 4639 5178 390938406 390938945 0.000000e+00 710.0
14 TraesCS2A01G259500 chr2B 91.975 486 16 8 2486 2953 390924811 390925291 0.000000e+00 660.0
15 TraesCS2A01G259500 chr2B 88.298 470 18 12 1993 2448 390924243 390924689 3.550000e-146 529.0
16 TraesCS2A01G259500 chr2B 91.791 134 8 3 4434 4566 390926819 390926950 3.180000e-42 183.0
17 TraesCS2A01G259500 chr2B 96.000 100 2 2 4342 4441 493852646 493852743 1.490000e-35 161.0
18 TraesCS2A01G259500 chr2B 83.333 138 23 0 998 1135 231232744 231232881 1.510000e-25 128.0
19 TraesCS2A01G259500 chr2B 97.619 42 1 0 4558 4599 390929763 390929804 7.190000e-09 73.1
20 TraesCS2A01G259500 chr3B 84.962 1064 157 1 3071 4134 761936950 761938010 0.000000e+00 1075.0
21 TraesCS2A01G259500 chr3B 82.868 1074 175 7 3071 4141 761902288 761903355 0.000000e+00 955.0
22 TraesCS2A01G259500 chr3B 94.393 107 3 3 4350 4454 52905168 52905273 1.490000e-35 161.0
23 TraesCS2A01G259500 chr3B 96.000 100 2 2 4343 4441 512457410 512457508 1.490000e-35 161.0
24 TraesCS2A01G259500 chr3A 84.939 1069 153 6 3071 4134 706922883 706923948 0.000000e+00 1075.0
25 TraesCS2A01G259500 chr3A 82.698 1075 175 9 3071 4141 706851447 706852514 0.000000e+00 944.0
26 TraesCS2A01G259500 chr3A 94.444 36 1 1 2053 2088 46003693 46003727 3.000000e-03 54.7
27 TraesCS2A01G259500 chr3A 100.000 28 0 0 2947 2974 509019727 509019754 9.000000e-03 52.8
28 TraesCS2A01G259500 chr3D 84.398 1064 163 1 3071 4134 572046002 572044942 0.000000e+00 1042.0
29 TraesCS2A01G259500 chr3D 83.054 1074 173 7 3071 4141 572101762 572100695 0.000000e+00 966.0
30 TraesCS2A01G259500 chr3D 82.514 1058 182 1 3071 4128 572085473 572084419 0.000000e+00 926.0
31 TraesCS2A01G259500 chr3D 78.484 488 72 20 4710 5178 185721027 185721500 6.560000e-74 289.0
32 TraesCS2A01G259500 chr3D 74.624 532 103 25 4646 5154 433419064 433418542 6.800000e-49 206.0
33 TraesCS2A01G259500 chr1A 79.903 413 70 9 4746 5148 521947057 521947466 1.820000e-74 291.0
34 TraesCS2A01G259500 chr7B 79.065 449 67 20 4745 5178 278906169 278906605 3.050000e-72 283.0
35 TraesCS2A01G259500 chr7B 88.189 127 12 3 4333 4458 695952570 695952694 1.160000e-31 148.0
36 TraesCS2A01G259500 chr5B 96.117 103 2 2 4343 4444 345770303 345770202 3.210000e-37 167.0
37 TraesCS2A01G259500 chr4A 97.938 97 1 1 4347 4443 650851207 650851302 3.210000e-37 167.0
38 TraesCS2A01G259500 chr4A 97.938 97 1 1 4347 4443 650861410 650861505 3.210000e-37 167.0
39 TraesCS2A01G259500 chr4A 96.000 100 2 2 4343 4441 723335662 723335564 1.490000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G259500 chr2A 407738441 407743618 5177 True 9563.000000 9563 100.000000 1 5178 1 chr2A.!!$R1 5177
1 TraesCS2A01G259500 chr2D 323073720 323079002 5282 False 1218.333333 2621 92.785000 1 5176 6 chr2D.!!$F2 5175
2 TraesCS2A01G259500 chr2B 390920229 390929804 9575 False 855.157143 2204 91.754714 1 4599 7 chr2B.!!$F4 4598
3 TraesCS2A01G259500 chr2B 390938406 390938945 539 False 710.000000 710 90.424000 4639 5178 1 chr2B.!!$F2 539
4 TraesCS2A01G259500 chr3B 761936950 761938010 1060 False 1075.000000 1075 84.962000 3071 4134 1 chr3B.!!$F4 1063
5 TraesCS2A01G259500 chr3B 761902288 761903355 1067 False 955.000000 955 82.868000 3071 4141 1 chr3B.!!$F3 1070
6 TraesCS2A01G259500 chr3A 706922883 706923948 1065 False 1075.000000 1075 84.939000 3071 4134 1 chr3A.!!$F4 1063
7 TraesCS2A01G259500 chr3A 706851447 706852514 1067 False 944.000000 944 82.698000 3071 4141 1 chr3A.!!$F3 1070
8 TraesCS2A01G259500 chr3D 572044942 572046002 1060 True 1042.000000 1042 84.398000 3071 4134 1 chr3D.!!$R2 1063
9 TraesCS2A01G259500 chr3D 572100695 572101762 1067 True 966.000000 966 83.054000 3071 4141 1 chr3D.!!$R4 1070
10 TraesCS2A01G259500 chr3D 572084419 572085473 1054 True 926.000000 926 82.514000 3071 4128 1 chr3D.!!$R3 1057
11 TraesCS2A01G259500 chr3D 433418542 433419064 522 True 206.000000 206 74.624000 4646 5154 1 chr3D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 654 1.067821 TGAATTTGAACCAACGGTGCC 59.932 47.619 0.00 0.00 35.34 5.01 F
1926 4201 0.107268 TCCATCCATGTCGAGCCATG 59.893 55.000 8.64 8.64 41.52 3.66 F
2204 4479 1.146774 TGATGCTCCCCAAAGTCCAAA 59.853 47.619 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 4709 0.106708 TCAACAGCCCATCCTATCGC 59.893 55.000 0.0 0.0 0.0 4.58 R
3790 6323 0.035630 GGCAGATGAAGAGCACCACT 60.036 55.000 0.0 0.0 0.0 4.00 R
4180 6713 1.366435 AGCTAGGGAAGGAAGGAAGGA 59.634 52.381 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.685841 TCAACATCGAAAAAGATCCGAAAC 58.314 37.500 0.00 0.00 35.87 2.78
29 30 5.237561 TCAACATCGAAAAAGATCCGAAACA 59.762 36.000 0.00 0.00 35.87 2.83
104 105 5.126396 AGAAACAGCATGATCGATCGATA 57.874 39.130 29.45 17.81 39.69 2.92
105 106 4.920340 AGAAACAGCATGATCGATCGATAC 59.080 41.667 29.45 21.57 39.69 2.24
197 212 2.186826 GGTCCGAATTCATGGCCGG 61.187 63.158 6.22 0.00 43.02 6.13
227 242 5.050159 GCAGTAAAGCACCCAAAAAGATTTG 60.050 40.000 0.00 0.00 44.50 2.32
298 313 3.153919 TCCCACGAAAATAAAGCTGCTT 58.846 40.909 9.53 9.53 0.00 3.91
505 520 5.705441 AGACGATTCTTTGGACTTGCATTAA 59.295 36.000 0.00 0.00 0.00 1.40
506 521 5.699839 ACGATTCTTTGGACTTGCATTAAC 58.300 37.500 0.00 0.00 0.00 2.01
508 523 6.653320 ACGATTCTTTGGACTTGCATTAACTA 59.347 34.615 0.00 0.00 0.00 2.24
509 524 7.148407 ACGATTCTTTGGACTTGCATTAACTAG 60.148 37.037 0.00 0.00 0.00 2.57
510 525 7.064609 CGATTCTTTGGACTTGCATTAACTAGA 59.935 37.037 0.00 0.00 0.00 2.43
511 526 8.814038 ATTCTTTGGACTTGCATTAACTAGAT 57.186 30.769 0.00 0.00 0.00 1.98
513 528 9.733556 TTCTTTGGACTTGCATTAACTAGATTA 57.266 29.630 0.00 0.00 0.00 1.75
514 529 9.383519 TCTTTGGACTTGCATTAACTAGATTAG 57.616 33.333 0.00 0.00 0.00 1.73
560 579 3.003113 AACTCGCGCACTACTCCCC 62.003 63.158 8.75 0.00 0.00 4.81
561 580 4.208686 CTCGCGCACTACTCCCCC 62.209 72.222 8.75 0.00 0.00 5.40
562 581 4.753662 TCGCGCACTACTCCCCCT 62.754 66.667 8.75 0.00 0.00 4.79
563 582 3.771160 CGCGCACTACTCCCCCTT 61.771 66.667 8.75 0.00 0.00 3.95
597 618 1.532437 ACGAATGAGTGTGTGTGCATG 59.468 47.619 0.00 0.00 0.00 4.06
633 654 1.067821 TGAATTTGAACCAACGGTGCC 59.932 47.619 0.00 0.00 35.34 5.01
731 752 5.817816 AGTTTAAGATAATGCCTCCAACTCG 59.182 40.000 0.00 0.00 0.00 4.18
756 777 3.870538 TCATATTTGCAGCCATCTCCT 57.129 42.857 0.00 0.00 0.00 3.69
758 779 4.645535 TCATATTTGCAGCCATCTCCTAC 58.354 43.478 0.00 0.00 0.00 3.18
770 795 4.263994 GCCATCTCCTACCTATCTAGTCCA 60.264 50.000 0.00 0.00 0.00 4.02
772 797 5.949354 CCATCTCCTACCTATCTAGTCCAAG 59.051 48.000 0.00 0.00 0.00 3.61
820 845 2.223829 CCGCTTGCATGCTACTACTAGT 60.224 50.000 20.33 0.00 0.00 2.57
912 3080 3.726144 GCTTGAGCCTCCCAGCCT 61.726 66.667 2.25 0.00 34.31 4.58
923 3091 1.302832 CCCAGCCTTCTCACCACAC 60.303 63.158 0.00 0.00 0.00 3.82
951 3119 2.950309 CCTCCTTGATCATCAGCTTTGG 59.050 50.000 0.00 0.00 0.00 3.28
967 3135 3.788937 CTTTGGGCCTGCTTAATCATTG 58.211 45.455 4.53 0.00 0.00 2.82
1341 3513 2.031516 CAACCAGCTGCTCCAGACG 61.032 63.158 8.66 0.00 32.44 4.18
1515 3687 1.226974 CATCGTCGGACGCATCCTT 60.227 57.895 24.76 3.33 43.73 3.36
1577 3749 4.598022 AGTACCTATAATACTCCGCTCCC 58.402 47.826 0.00 0.00 0.00 4.30
1596 3773 5.099042 TCCCTTAGCTCCTTCATTTGTAC 57.901 43.478 0.00 0.00 0.00 2.90
1597 3774 4.783227 TCCCTTAGCTCCTTCATTTGTACT 59.217 41.667 0.00 0.00 0.00 2.73
1598 3775 4.878397 CCCTTAGCTCCTTCATTTGTACTG 59.122 45.833 0.00 0.00 0.00 2.74
1599 3776 5.491982 CCTTAGCTCCTTCATTTGTACTGT 58.508 41.667 0.00 0.00 0.00 3.55
1600 3777 6.351881 CCCTTAGCTCCTTCATTTGTACTGTA 60.352 42.308 0.00 0.00 0.00 2.74
1622 3799 8.492415 TGTACTCCTATTATCTGTGGCTTATT 57.508 34.615 0.00 0.00 0.00 1.40
1770 3959 7.442656 ACTAGTATAGCCGCACTTGATTATTT 58.557 34.615 0.00 0.00 44.39 1.40
1776 3965 4.572389 AGCCGCACTTGATTATTTCTACAG 59.428 41.667 0.00 0.00 0.00 2.74
1823 4095 7.145985 ACTCCACAAAGTAGCATATATACACG 58.854 38.462 0.00 0.00 0.00 4.49
1845 4117 3.914426 ATTTAGTAGACAGTGGCCAGG 57.086 47.619 5.11 3.68 0.00 4.45
1868 4140 4.381932 GGGTAGGTGGCAAAATGAAATGAG 60.382 45.833 0.00 0.00 0.00 2.90
1926 4201 0.107268 TCCATCCATGTCGAGCCATG 59.893 55.000 8.64 8.64 41.52 3.66
2036 4311 2.642139 TACATCACCGGACGAGTTTC 57.358 50.000 9.46 0.00 0.00 2.78
2204 4479 1.146774 TGATGCTCCCCAAAGTCCAAA 59.853 47.619 0.00 0.00 0.00 3.28
2402 4692 5.741510 CCTGATTGATCTCGCGTAGATATTC 59.258 44.000 17.22 14.49 45.35 1.75
2417 4707 8.012241 GCGTAGATATTCAATCTTCCATTGAAC 58.988 37.037 11.06 1.35 46.67 3.18
2424 4714 5.427378 TCAATCTTCCATTGAACAGCGATA 58.573 37.500 0.00 0.00 35.35 2.92
2448 4738 4.576463 GGATGGGCTGTTGAAAGTATACTG 59.424 45.833 6.06 0.00 0.00 2.74
2449 4739 3.950397 TGGGCTGTTGAAAGTATACTGG 58.050 45.455 6.06 0.00 0.00 4.00
2451 4741 4.532916 TGGGCTGTTGAAAGTATACTGGTA 59.467 41.667 6.06 0.00 0.00 3.25
2452 4742 5.116882 GGGCTGTTGAAAGTATACTGGTAG 58.883 45.833 6.06 1.48 0.00 3.18
2567 4968 1.784062 CAAGCGAGCCTTCTTCACG 59.216 57.895 0.00 0.00 0.00 4.35
2624 5025 5.574188 ACTGATTAAACCTTCCTTGCATCT 58.426 37.500 0.00 0.00 0.00 2.90
2625 5026 6.721318 ACTGATTAAACCTTCCTTGCATCTA 58.279 36.000 0.00 0.00 0.00 1.98
2626 5027 6.599638 ACTGATTAAACCTTCCTTGCATCTAC 59.400 38.462 0.00 0.00 0.00 2.59
2627 5028 5.584649 TGATTAAACCTTCCTTGCATCTACG 59.415 40.000 0.00 0.00 0.00 3.51
2642 5043 5.066117 TGCATCTACGTACTACTCTTCCAAG 59.934 44.000 0.00 0.00 0.00 3.61
2718 5119 3.810310 AGAGATTCGTGGATGTCCTTC 57.190 47.619 0.09 0.00 36.82 3.46
2908 5317 3.078097 GAGGAAGAAGCAAGGAAGAACC 58.922 50.000 0.00 0.00 39.35 3.62
2931 5340 3.709987 ACTGAAAGCAATGCAGACAAAC 58.290 40.909 8.35 0.00 37.60 2.93
2932 5341 3.130869 ACTGAAAGCAATGCAGACAAACA 59.869 39.130 8.35 0.00 37.60 2.83
2933 5342 3.708890 TGAAAGCAATGCAGACAAACAG 58.291 40.909 8.35 0.00 0.00 3.16
2934 5343 3.130869 TGAAAGCAATGCAGACAAACAGT 59.869 39.130 8.35 0.00 0.00 3.55
2935 5344 2.787601 AGCAATGCAGACAAACAGTG 57.212 45.000 8.35 0.00 35.11 3.66
2936 5345 2.026641 AGCAATGCAGACAAACAGTGT 58.973 42.857 8.35 0.00 45.74 3.55
2938 5347 2.223548 GCAATGCAGACAAACAGTGTGA 60.224 45.455 0.00 0.00 43.84 3.58
2940 5349 3.976793 ATGCAGACAAACAGTGTGAAG 57.023 42.857 0.00 0.00 43.84 3.02
2941 5350 2.984562 TGCAGACAAACAGTGTGAAGA 58.015 42.857 0.00 0.00 43.84 2.87
2942 5351 3.544684 TGCAGACAAACAGTGTGAAGAT 58.455 40.909 0.00 0.00 43.84 2.40
2943 5352 3.947196 TGCAGACAAACAGTGTGAAGATT 59.053 39.130 0.00 0.00 43.84 2.40
2944 5353 5.122519 TGCAGACAAACAGTGTGAAGATTA 58.877 37.500 0.00 0.00 43.84 1.75
2945 5354 5.237127 TGCAGACAAACAGTGTGAAGATTAG 59.763 40.000 0.00 0.00 43.84 1.73
2946 5355 5.237344 GCAGACAAACAGTGTGAAGATTAGT 59.763 40.000 0.00 0.00 43.84 2.24
2947 5356 6.423905 GCAGACAAACAGTGTGAAGATTAGTA 59.576 38.462 0.00 0.00 43.84 1.82
2949 5358 8.826710 CAGACAAACAGTGTGAAGATTAGTAAA 58.173 33.333 0.00 0.00 43.84 2.01
2950 5359 9.561069 AGACAAACAGTGTGAAGATTAGTAAAT 57.439 29.630 0.00 0.00 41.96 1.40
2955 5364 9.998106 AACAGTGTGAAGATTAGTAAATACAGT 57.002 29.630 0.00 0.00 0.00 3.55
2956 5365 9.998106 ACAGTGTGAAGATTAGTAAATACAGTT 57.002 29.630 0.00 0.00 0.00 3.16
3001 5528 4.695455 AGCGTCATGTTATTAGTTTGTGCT 59.305 37.500 0.00 0.00 0.00 4.40
3307 5840 4.388499 CCCGACACCCCCAACTCG 62.388 72.222 0.00 0.00 0.00 4.18
4096 6629 2.435059 GTGCTCGTCTGGAAGGGC 60.435 66.667 1.61 1.61 0.00 5.19
4179 6712 2.433145 CGCCGCCATCGCATAGAT 60.433 61.111 0.00 0.00 41.01 1.98
4180 6713 2.029288 CGCCGCCATCGCATAGATT 61.029 57.895 0.00 0.00 37.52 2.40
4181 6714 1.790387 GCCGCCATCGCATAGATTC 59.210 57.895 0.00 0.00 37.52 2.52
4182 6715 1.639298 GCCGCCATCGCATAGATTCC 61.639 60.000 0.00 0.00 37.52 3.01
4348 6898 7.619965 TCAATCACCATTGTTCTCATACTACA 58.380 34.615 0.00 0.00 40.47 2.74
4351 6901 9.770097 AATCACCATTGTTCTCATACTACATAG 57.230 33.333 0.00 0.00 0.00 2.23
4352 6902 8.306313 TCACCATTGTTCTCATACTACATAGT 57.694 34.615 0.00 0.00 40.24 2.12
4353 6903 9.416284 TCACCATTGTTCTCATACTACATAGTA 57.584 33.333 1.33 1.33 42.43 1.82
4354 6904 9.464714 CACCATTGTTCTCATACTACATAGTAC 57.535 37.037 0.84 0.00 41.18 2.73
4355 6905 9.422681 ACCATTGTTCTCATACTACATAGTACT 57.577 33.333 0.00 0.00 41.18 2.73
4356 6906 9.900710 CCATTGTTCTCATACTACATAGTACTC 57.099 37.037 0.00 0.00 41.18 2.59
4357 6907 9.900710 CATTGTTCTCATACTACATAGTACTCC 57.099 37.037 0.00 0.00 41.18 3.85
4358 6908 8.461249 TTGTTCTCATACTACATAGTACTCCC 57.539 38.462 0.00 0.00 41.18 4.30
4359 6909 7.813331 TGTTCTCATACTACATAGTACTCCCT 58.187 38.462 0.00 0.00 41.18 4.20
4360 6910 7.937942 TGTTCTCATACTACATAGTACTCCCTC 59.062 40.741 0.00 0.00 41.18 4.30
4361 6911 7.875338 TCTCATACTACATAGTACTCCCTCT 57.125 40.000 0.00 0.00 41.18 3.69
4362 6912 7.681679 TCTCATACTACATAGTACTCCCTCTG 58.318 42.308 0.00 0.00 41.18 3.35
4363 6913 7.292827 TCTCATACTACATAGTACTCCCTCTGT 59.707 40.741 0.00 0.00 41.18 3.41
4364 6914 8.502047 TCATACTACATAGTACTCCCTCTGTA 57.498 38.462 0.00 0.85 41.18 2.74
4365 6915 8.942033 TCATACTACATAGTACTCCCTCTGTAA 58.058 37.037 0.00 0.00 41.18 2.41
4367 6917 7.878547 ACTACATAGTACTCCCTCTGTAAAC 57.121 40.000 0.00 0.00 34.13 2.01
4368 6918 7.641249 ACTACATAGTACTCCCTCTGTAAACT 58.359 38.462 0.00 0.00 34.13 2.66
4369 6919 8.776119 ACTACATAGTACTCCCTCTGTAAACTA 58.224 37.037 0.00 0.00 34.13 2.24
4370 6920 9.624373 CTACATAGTACTCCCTCTGTAAACTAA 57.376 37.037 0.00 0.00 0.00 2.24
4379 6929 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4380 6930 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4381 6931 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4382 6932 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4383 6933 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4398 6948 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4399 6949 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4400 6950 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
4401 6951 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
4402 6952 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
4403 6953 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
4404 6954 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
4410 6960 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
4411 6961 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
4412 6962 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
4413 6963 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
4414 6964 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
4431 6981 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4432 6982 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4433 6983 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4434 6984 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4435 6985 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4467 7017 7.645058 ACTTTCACTTGGAAGAAGAATCAAA 57.355 32.000 4.17 0.00 36.72 2.69
4538 7088 1.668151 GCCAACGAGTCACCCTGTC 60.668 63.158 0.00 0.00 0.00 3.51
4547 7097 1.203364 AGTCACCCTGTCATCTCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
4624 9996 1.639635 CCCTCCCTTGCAGCATACCT 61.640 60.000 0.00 0.00 0.00 3.08
4625 9997 0.179034 CCTCCCTTGCAGCATACCTC 60.179 60.000 0.00 0.00 0.00 3.85
4626 9998 0.531532 CTCCCTTGCAGCATACCTCG 60.532 60.000 0.00 0.00 0.00 4.63
4627 9999 1.221840 CCCTTGCAGCATACCTCGT 59.778 57.895 0.00 0.00 0.00 4.18
4628 10000 0.464036 CCCTTGCAGCATACCTCGTA 59.536 55.000 0.00 0.00 0.00 3.43
4629 10001 1.571919 CCTTGCAGCATACCTCGTAC 58.428 55.000 0.00 0.00 0.00 3.67
4630 10002 1.134818 CCTTGCAGCATACCTCGTACA 60.135 52.381 0.00 0.00 0.00 2.90
4631 10003 2.196749 CTTGCAGCATACCTCGTACAG 58.803 52.381 0.00 0.00 0.00 2.74
4657 10029 6.369890 TCGTACTATCATTCTATCCACGTACC 59.630 42.308 0.00 0.00 0.00 3.34
4740 10117 0.179076 ATCAATCACGGAGCGCATGA 60.179 50.000 11.47 8.24 0.00 3.07
4741 10118 0.179076 TCAATCACGGAGCGCATGAT 60.179 50.000 11.47 10.38 34.52 2.45
4742 10119 0.234106 CAATCACGGAGCGCATGATC 59.766 55.000 11.47 0.00 31.84 2.92
4743 10120 0.179076 AATCACGGAGCGCATGATCA 60.179 50.000 11.47 0.00 31.84 2.92
4758 10279 4.937620 GCATGATCAGTTTACTCAGGTTCA 59.062 41.667 0.09 0.00 0.00 3.18
4772 10293 2.366916 CAGGTTCAGGTCTCTGTGAAGT 59.633 50.000 0.00 0.00 41.59 3.01
4784 10305 9.482175 AGGTCTCTGTGAAGTATAAAACTCTAT 57.518 33.333 0.00 0.00 37.50 1.98
4879 10405 3.432890 GGAAGAGCTAGTGCAAATAGGCT 60.433 47.826 8.79 0.00 42.74 4.58
4914 10440 3.561143 TGTAAAGGTTGTCACATGCCTT 58.439 40.909 8.03 8.03 42.54 4.35
4992 10529 8.202811 CAGATAGTGGCTACAATGCTATCATAT 58.797 37.037 2.02 0.00 39.99 1.78
5019 10556 6.732896 ATTCTGACGGTATAGGACAAGAAT 57.267 37.500 0.00 0.00 0.00 2.40
5158 10695 8.243426 GGTGTCAATAAAGTTGCTATTCAATGA 58.757 33.333 0.00 0.00 36.99 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.425162 AGCTTCCTTGTTTCGGATCTT 57.575 42.857 0.00 0.00 0.00 2.40
18 19 3.339141 GAAGCTTCCTTGTTTCGGATCT 58.661 45.455 15.97 0.00 0.00 2.75
78 79 5.122239 TCGATCGATCATGCTGTTTCTTTTT 59.878 36.000 24.40 0.00 0.00 1.94
79 80 4.631377 TCGATCGATCATGCTGTTTCTTTT 59.369 37.500 24.40 0.00 0.00 2.27
84 85 4.445718 GTGTATCGATCGATCATGCTGTTT 59.554 41.667 32.50 9.73 36.17 2.83
104 105 0.253347 ATCCCTGGGATGGTCAGTGT 60.253 55.000 27.29 0.01 41.43 3.55
105 106 1.806496 TATCCCTGGGATGGTCAGTG 58.194 55.000 33.71 0.00 43.06 3.66
227 242 1.134995 TCGTGATGGTGAGTCATGAGC 60.135 52.381 0.00 0.00 36.86 4.26
328 343 4.216472 ACCAGCGAGAAGATTTCCTTTTTC 59.784 41.667 0.00 0.00 34.68 2.29
334 349 5.048991 TGTTTTAACCAGCGAGAAGATTTCC 60.049 40.000 0.00 0.00 0.00 3.13
335 350 5.997385 TGTTTTAACCAGCGAGAAGATTTC 58.003 37.500 0.00 0.00 0.00 2.17
336 351 5.531287 ACTGTTTTAACCAGCGAGAAGATTT 59.469 36.000 0.00 0.00 0.00 2.17
337 352 5.063880 ACTGTTTTAACCAGCGAGAAGATT 58.936 37.500 0.00 0.00 0.00 2.40
338 353 4.642429 ACTGTTTTAACCAGCGAGAAGAT 58.358 39.130 0.00 0.00 0.00 2.40
339 354 4.067972 ACTGTTTTAACCAGCGAGAAGA 57.932 40.909 0.00 0.00 0.00 2.87
340 355 4.813296 AACTGTTTTAACCAGCGAGAAG 57.187 40.909 0.00 0.00 0.00 2.85
505 520 8.651589 TGGATGGTCGAATAATCTAATCTAGT 57.348 34.615 0.00 0.00 0.00 2.57
506 521 9.743057 GATGGATGGTCGAATAATCTAATCTAG 57.257 37.037 0.00 0.00 0.00 2.43
508 523 7.122799 TCGATGGATGGTCGAATAATCTAATCT 59.877 37.037 0.00 0.00 44.25 2.40
509 524 7.258441 TCGATGGATGGTCGAATAATCTAATC 58.742 38.462 0.00 0.00 44.25 1.75
510 525 7.170393 TCGATGGATGGTCGAATAATCTAAT 57.830 36.000 0.00 0.00 44.25 1.73
511 526 6.584185 TCGATGGATGGTCGAATAATCTAA 57.416 37.500 0.00 0.00 44.25 2.10
526 545 3.190079 CGAGTTGTGTTGATCGATGGAT 58.810 45.455 0.54 0.00 37.35 3.41
561 580 4.452733 GTCTCCCGTCCGGCCAAG 62.453 72.222 2.24 0.00 0.00 3.61
597 618 8.537223 GTTCAAATTCAATCACATGCATACATC 58.463 33.333 0.00 0.00 32.87 3.06
633 654 4.991056 ACTTGATCGATATGATTCAACCGG 59.009 41.667 0.00 0.00 37.47 5.28
636 657 9.214953 GTTTTGACTTGATCGATATGATTCAAC 57.785 33.333 0.00 0.00 37.47 3.18
699 720 3.304057 GCATTATCTTAAACTCGCTGGCC 60.304 47.826 0.00 0.00 0.00 5.36
731 752 2.894763 TGGCTGCAAATATGAATGCC 57.105 45.000 0.50 1.12 41.87 4.40
756 777 6.727231 TGGTCAAAACTTGGACTAGATAGGTA 59.273 38.462 0.00 0.00 34.49 3.08
758 779 5.875359 GTGGTCAAAACTTGGACTAGATAGG 59.125 44.000 0.00 0.00 34.49 2.57
770 795 2.654863 CTGAGGTGGTGGTCAAAACTT 58.345 47.619 0.00 0.00 0.00 2.66
772 797 0.668535 GCTGAGGTGGTGGTCAAAAC 59.331 55.000 0.00 0.00 0.00 2.43
820 845 0.590682 CGCTGTGTGTATGGTTGCAA 59.409 50.000 0.00 0.00 0.00 4.08
908 3076 2.529744 GGGGTGTGGTGAGAAGGCT 61.530 63.158 0.00 0.00 0.00 4.58
912 3080 0.988832 GGTATGGGGTGTGGTGAGAA 59.011 55.000 0.00 0.00 0.00 2.87
923 3091 2.981784 TGATGATCAAGGAGGTATGGGG 59.018 50.000 0.00 0.00 0.00 4.96
951 3119 3.243201 GCACTACAATGATTAAGCAGGCC 60.243 47.826 0.00 0.00 0.00 5.19
967 3135 2.342179 GGCAAGAACTCAGAGCACTAC 58.658 52.381 0.00 0.00 0.00 2.73
1341 3513 1.007359 AGGTAGAGGGAGGAGGTGAAC 59.993 57.143 0.00 0.00 0.00 3.18
1485 3657 0.387239 CGACGATGAGCATGGCGATA 60.387 55.000 0.00 0.00 0.00 2.92
1515 3687 4.351938 CCAACGCCGACACCGAGA 62.352 66.667 0.00 0.00 38.22 4.04
1577 3749 7.324178 AGTACAGTACAAATGAAGGAGCTAAG 58.676 38.462 13.37 0.00 0.00 2.18
1596 3773 6.412362 AAGCCACAGATAATAGGAGTACAG 57.588 41.667 0.00 0.00 0.00 2.74
1597 3774 8.492415 AATAAGCCACAGATAATAGGAGTACA 57.508 34.615 0.00 0.00 0.00 2.90
1598 3775 9.425577 GAAATAAGCCACAGATAATAGGAGTAC 57.574 37.037 0.00 0.00 0.00 2.73
1599 3776 8.594550 GGAAATAAGCCACAGATAATAGGAGTA 58.405 37.037 0.00 0.00 0.00 2.59
1600 3777 7.293535 AGGAAATAAGCCACAGATAATAGGAGT 59.706 37.037 0.00 0.00 0.00 3.85
1756 3945 8.817100 TCATTACTGTAGAAATAATCAAGTGCG 58.183 33.333 0.00 0.00 0.00 5.34
1823 4095 4.192317 CCTGGCCACTGTCTACTAAATTC 58.808 47.826 0.00 0.00 0.00 2.17
1845 4117 3.513515 TCATTTCATTTTGCCACCTACCC 59.486 43.478 0.00 0.00 0.00 3.69
1868 4140 9.798994 ATGTACTTGTAGTATGTAGCTGTAAAC 57.201 33.333 0.00 0.00 32.65 2.01
1926 4201 9.713740 CAGCATATTTCTTTCTTGTCTCATTAC 57.286 33.333 0.00 0.00 0.00 1.89
2155 4430 2.242452 CCCTCTTTTCCCTCCCTTAAGG 59.758 54.545 15.14 15.14 36.08 2.69
2156 4431 2.357257 GCCCTCTTTTCCCTCCCTTAAG 60.357 54.545 0.00 0.00 0.00 1.85
2157 4432 1.639108 GCCCTCTTTTCCCTCCCTTAA 59.361 52.381 0.00 0.00 0.00 1.85
2158 4433 1.296002 GCCCTCTTTTCCCTCCCTTA 58.704 55.000 0.00 0.00 0.00 2.69
2159 4434 1.510431 GGCCCTCTTTTCCCTCCCTT 61.510 60.000 0.00 0.00 0.00 3.95
2160 4435 1.931180 GGCCCTCTTTTCCCTCCCT 60.931 63.158 0.00 0.00 0.00 4.20
2161 4436 2.684104 GGCCCTCTTTTCCCTCCC 59.316 66.667 0.00 0.00 0.00 4.30
2162 4437 2.238701 TGGGCCCTCTTTTCCCTCC 61.239 63.158 25.70 0.00 40.69 4.30
2163 4438 1.000771 GTGGGCCCTCTTTTCCCTC 60.001 63.158 25.70 0.00 40.69 4.30
2164 4439 1.074296 AAGTGGGCCCTCTTTTCCCT 61.074 55.000 29.57 10.26 40.69 4.20
2165 4440 0.178932 AAAGTGGGCCCTCTTTTCCC 60.179 55.000 35.68 10.63 36.68 3.97
2166 4441 0.969149 CAAAGTGGGCCCTCTTTTCC 59.031 55.000 37.73 13.11 37.57 3.13
2167 4442 1.995376 TCAAAGTGGGCCCTCTTTTC 58.005 50.000 37.73 16.48 37.57 2.29
2168 4443 2.250924 CATCAAAGTGGGCCCTCTTTT 58.749 47.619 37.73 26.54 37.57 2.27
2169 4444 1.928868 CATCAAAGTGGGCCCTCTTT 58.071 50.000 35.68 35.68 39.41 2.52
2170 4445 0.613012 GCATCAAAGTGGGCCCTCTT 60.613 55.000 29.57 29.57 0.00 2.85
2171 4446 1.000396 GCATCAAAGTGGGCCCTCT 60.000 57.895 25.70 23.24 0.00 3.69
2172 4447 1.000396 AGCATCAAAGTGGGCCCTC 60.000 57.895 25.70 20.95 0.00 4.30
2204 4479 0.690762 AAACATCACCTACGCCCAGT 59.309 50.000 0.00 0.00 0.00 4.00
2402 4692 4.627611 ATCGCTGTTCAATGGAAGATTG 57.372 40.909 0.00 0.00 32.62 2.67
2417 4707 4.689484 CAGCCCATCCTATCGCTG 57.311 61.111 0.00 0.00 42.42 5.18
2419 4709 0.106708 TCAACAGCCCATCCTATCGC 59.893 55.000 0.00 0.00 0.00 4.58
2424 4714 4.475016 AGTATACTTTCAACAGCCCATCCT 59.525 41.667 0.00 0.00 0.00 3.24
2448 4738 9.930693 AGCTGCTAAAATGAATACTATACTACC 57.069 33.333 0.00 0.00 0.00 3.18
2451 4741 8.432805 ACCAGCTGCTAAAATGAATACTATACT 58.567 33.333 8.66 0.00 0.00 2.12
2452 4742 8.499162 CACCAGCTGCTAAAATGAATACTATAC 58.501 37.037 8.66 0.00 0.00 1.47
2481 4871 3.763897 GCCCAATGAATTGAACCAGTACT 59.236 43.478 4.58 0.00 40.14 2.73
2554 4955 0.390472 CAGACCCGTGAAGAAGGCTC 60.390 60.000 0.00 0.00 0.00 4.70
2567 4968 2.830104 ACAGTTGTTTACGACAGACCC 58.170 47.619 3.26 0.00 39.94 4.46
2908 5317 4.754372 TTGTCTGCATTGCTTTCAGTAG 57.246 40.909 10.49 0.00 0.00 2.57
2958 5367 9.320352 TGACGCTTAATTAGATGTGCTTTAATA 57.680 29.630 0.00 0.00 0.00 0.98
2959 5368 8.208718 TGACGCTTAATTAGATGTGCTTTAAT 57.791 30.769 0.00 0.00 0.00 1.40
2961 5370 7.279981 ACATGACGCTTAATTAGATGTGCTTTA 59.720 33.333 0.00 0.00 0.00 1.85
2962 5371 6.094048 ACATGACGCTTAATTAGATGTGCTTT 59.906 34.615 0.00 0.00 0.00 3.51
2963 5372 5.586243 ACATGACGCTTAATTAGATGTGCTT 59.414 36.000 0.00 0.00 0.00 3.91
2964 5373 5.118990 ACATGACGCTTAATTAGATGTGCT 58.881 37.500 0.00 0.00 0.00 4.40
2965 5374 5.409643 ACATGACGCTTAATTAGATGTGC 57.590 39.130 0.00 0.00 0.00 4.57
3024 5551 8.188139 TGTTAGACCAAACACAGATTTTCTTTC 58.812 33.333 0.00 0.00 34.50 2.62
3028 5556 7.382218 CCAATGTTAGACCAAACACAGATTTTC 59.618 37.037 0.00 0.00 41.89 2.29
3790 6323 0.035630 GGCAGATGAAGAGCACCACT 60.036 55.000 0.00 0.00 0.00 4.00
4015 6548 1.524355 GCGATGAAGACGGTCATGATG 59.476 52.381 11.27 0.00 38.38 3.07
4096 6629 3.052082 CTGCGCCAGAACCAGTGG 61.052 66.667 7.91 7.91 38.21 4.00
4179 6712 2.197465 GCTAGGGAAGGAAGGAAGGAA 58.803 52.381 0.00 0.00 0.00 3.36
4180 6713 1.366435 AGCTAGGGAAGGAAGGAAGGA 59.634 52.381 0.00 0.00 0.00 3.36
4181 6714 1.765904 GAGCTAGGGAAGGAAGGAAGG 59.234 57.143 0.00 0.00 0.00 3.46
4182 6715 1.765904 GGAGCTAGGGAAGGAAGGAAG 59.234 57.143 0.00 0.00 0.00 3.46
4316 6866 5.819991 AGAACAATGGTGATTGATGGTACT 58.180 37.500 0.00 0.00 41.49 2.73
4330 6880 9.900710 GAGTACTATGTAGTATGAGAACAATGG 57.099 37.037 0.00 0.00 40.55 3.16
4353 6903 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4354 6904 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4355 6905 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4356 6906 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4357 6907 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4372 6922 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4373 6923 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4374 6924 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4375 6925 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4376 6926 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
4377 6927 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
4378 6928 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
4384 6934 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
4385 6935 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
4386 6936 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
4387 6937 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
4388 6938 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
4405 6955 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4406 6956 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4407 6957 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4408 6958 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4409 6959 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4418 6968 9.401058 GTACATAGTACTCCCTCTGTAAACTAA 57.599 37.037 0.00 0.00 29.25 2.24
4419 6969 8.776119 AGTACATAGTACTCCCTCTGTAAACTA 58.224 37.037 0.00 0.00 29.25 2.24
4420 6970 7.641249 AGTACATAGTACTCCCTCTGTAAACT 58.359 38.462 0.00 0.00 29.25 2.66
4421 6971 7.878547 AGTACATAGTACTCCCTCTGTAAAC 57.121 40.000 0.00 0.00 29.25 2.01
4422 6972 8.890410 AAAGTACATAGTACTCCCTCTGTAAA 57.110 34.615 9.98 0.00 29.25 2.01
4423 6973 8.111545 TGAAAGTACATAGTACTCCCTCTGTAA 58.888 37.037 9.98 0.00 29.25 2.41
4424 6974 7.555554 GTGAAAGTACATAGTACTCCCTCTGTA 59.444 40.741 9.98 0.00 0.00 2.74
4425 6975 6.377712 GTGAAAGTACATAGTACTCCCTCTGT 59.622 42.308 9.98 0.00 0.00 3.41
4426 6976 6.603997 AGTGAAAGTACATAGTACTCCCTCTG 59.396 42.308 9.98 0.00 0.00 3.35
4427 6977 6.733509 AGTGAAAGTACATAGTACTCCCTCT 58.266 40.000 9.98 8.30 0.00 3.69
4428 6978 7.259161 CAAGTGAAAGTACATAGTACTCCCTC 58.741 42.308 9.98 8.14 0.00 4.30
4429 6979 6.154706 CCAAGTGAAAGTACATAGTACTCCCT 59.845 42.308 9.98 2.44 0.00 4.20
4430 6980 6.154021 TCCAAGTGAAAGTACATAGTACTCCC 59.846 42.308 9.98 6.23 0.00 4.30
4431 6981 7.166691 TCCAAGTGAAAGTACATAGTACTCC 57.833 40.000 9.98 6.53 0.00 3.85
4432 6982 8.521176 TCTTCCAAGTGAAAGTACATAGTACTC 58.479 37.037 9.98 0.91 31.06 2.59
4433 6983 8.418597 TCTTCCAAGTGAAAGTACATAGTACT 57.581 34.615 0.00 0.00 31.06 2.73
4434 6984 9.141400 CTTCTTCCAAGTGAAAGTACATAGTAC 57.859 37.037 0.00 0.00 31.06 2.73
4435 6985 9.085645 TCTTCTTCCAAGTGAAAGTACATAGTA 57.914 33.333 0.00 0.00 31.06 1.82
4436 6986 7.963532 TCTTCTTCCAAGTGAAAGTACATAGT 58.036 34.615 0.00 0.00 31.06 2.12
4437 6987 8.833231 TTCTTCTTCCAAGTGAAAGTACATAG 57.167 34.615 0.00 0.00 31.06 2.23
4438 6988 9.436957 GATTCTTCTTCCAAGTGAAAGTACATA 57.563 33.333 0.00 0.00 31.06 2.29
4439 6989 7.939039 TGATTCTTCTTCCAAGTGAAAGTACAT 59.061 33.333 0.00 0.00 31.06 2.29
4440 6990 7.279615 TGATTCTTCTTCCAAGTGAAAGTACA 58.720 34.615 0.00 0.00 31.06 2.90
4538 7088 6.475596 AAAATTCATAGGCAAAGGGAGATG 57.524 37.500 0.00 0.00 0.00 2.90
4616 9988 1.747709 ACGACTGTACGAGGTATGCT 58.252 50.000 0.00 0.00 37.03 3.79
4627 9999 7.117379 CGTGGATAGAATGATAGTACGACTGTA 59.883 40.741 0.00 0.00 0.00 2.74
4628 10000 6.073167 CGTGGATAGAATGATAGTACGACTGT 60.073 42.308 0.00 0.00 0.00 3.55
4629 10001 6.073167 ACGTGGATAGAATGATAGTACGACTG 60.073 42.308 0.00 0.00 33.70 3.51
4630 10002 5.996513 ACGTGGATAGAATGATAGTACGACT 59.003 40.000 0.00 0.00 33.70 4.18
4631 10003 6.238610 ACGTGGATAGAATGATAGTACGAC 57.761 41.667 0.00 0.00 33.70 4.34
4657 10029 2.877168 GCTTCTGAGCCCATAGATTGTG 59.123 50.000 0.00 0.00 43.29 3.33
4740 10117 4.841246 AGACCTGAACCTGAGTAAACTGAT 59.159 41.667 0.00 0.00 0.00 2.90
4741 10118 4.223953 AGACCTGAACCTGAGTAAACTGA 58.776 43.478 0.00 0.00 0.00 3.41
4742 10119 4.282195 AGAGACCTGAACCTGAGTAAACTG 59.718 45.833 0.00 0.00 0.00 3.16
4743 10120 4.282195 CAGAGACCTGAACCTGAGTAAACT 59.718 45.833 0.00 0.00 43.02 2.66
4758 10279 7.784470 AGAGTTTTATACTTCACAGAGACCT 57.216 36.000 0.00 0.00 37.17 3.85
4795 10316 9.550406 CTTGGGCATTTTCACATATAATTTCAT 57.450 29.630 0.00 0.00 0.00 2.57
4915 10441 7.406916 TGTGGTAGCCCTTTCATCTATAAAAA 58.593 34.615 0.00 0.00 0.00 1.94
4981 10509 8.072321 ACCGTCAGAATTAGATATGATAGCAT 57.928 34.615 0.00 0.00 38.54 3.79
4992 10529 7.058525 TCTTGTCCTATACCGTCAGAATTAGA 58.941 38.462 0.00 0.00 0.00 2.10
5019 10556 7.095229 GCGTGACATCTAATGGAGCATTAAATA 60.095 37.037 0.00 0.00 36.14 1.40
5037 10574 1.330655 ATTCCTCCTCGGCGTGACAT 61.331 55.000 10.96 0.00 0.00 3.06
5097 10634 5.675575 GCGTGACGAAAGAATAAGAGGTAGA 60.676 44.000 10.10 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.