Multiple sequence alignment - TraesCS2A01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G259400 chr2A 100.000 6917 0 0 1 6917 407370144 407377060 0.000000e+00 12774.0
1 TraesCS2A01G259400 chr2A 77.920 548 61 22 104 617 737853932 737854453 3.160000e-73 287.0
2 TraesCS2A01G259400 chr2A 77.636 550 63 22 102 617 737895392 737895915 5.280000e-71 279.0
3 TraesCS2A01G259400 chr2A 100.000 91 0 0 855 945 407370910 407371000 1.190000e-37 169.0
4 TraesCS2A01G259400 chr2A 100.000 91 0 0 767 857 407370998 407371088 1.190000e-37 169.0
5 TraesCS2A01G259400 chr2A 85.000 80 8 4 2139 2216 67978587 67978664 2.070000e-10 78.7
6 TraesCS2A01G259400 chr2D 96.944 3632 100 5 2354 5985 323092474 323088854 0.000000e+00 6082.0
7 TraesCS2A01G259400 chr2D 91.370 1263 77 17 898 2133 323093812 323092555 0.000000e+00 1700.0
8 TraesCS2A01G259400 chr2D 92.736 826 42 6 5980 6796 323088069 323087253 0.000000e+00 1177.0
9 TraesCS2A01G259400 chr2D 94.898 196 10 0 619 814 323107108 323106913 2.420000e-79 307.0
10 TraesCS2A01G259400 chr2D 92.308 78 5 1 2223 2299 323092549 323092472 7.330000e-20 110.0
11 TraesCS2A01G259400 chr2B 94.496 3652 176 17 2354 5990 390945074 390941433 0.000000e+00 5607.0
12 TraesCS2A01G259400 chr2B 92.066 1399 75 21 929 2301 390946461 390945073 0.000000e+00 1936.0
13 TraesCS2A01G259400 chr2B 87.241 627 56 14 1 611 506351831 506352449 0.000000e+00 693.0
14 TraesCS2A01G259400 chr2B 84.928 345 22 8 5987 6315 390941409 390941079 8.650000e-84 322.0
15 TraesCS2A01G259400 chr2B 78.919 555 55 25 102 621 21225809 21226336 3.110000e-83 320.0
16 TraesCS2A01G259400 chr2B 89.262 149 13 2 618 763 390947830 390947682 4.260000e-42 183.0
17 TraesCS2A01G259400 chr2B 93.478 46 2 1 2321 2366 610605140 610605096 4.480000e-07 67.6
18 TraesCS2A01G259400 chr1D 89.524 630 45 12 1 617 341278474 341277853 0.000000e+00 778.0
19 TraesCS2A01G259400 chr1D 85.625 160 22 1 6649 6807 217859958 217859799 4.290000e-37 167.0
20 TraesCS2A01G259400 chr1A 87.907 645 52 15 1 628 19520086 19519451 0.000000e+00 736.0
21 TraesCS2A01G259400 chr1A 95.349 43 1 1 2321 2363 587666943 587666984 4.480000e-07 67.6
22 TraesCS2A01G259400 chr7B 87.005 631 57 15 15 628 702437741 702437119 0.000000e+00 688.0
23 TraesCS2A01G259400 chr7B 85.628 661 45 15 1 627 593520233 593520877 0.000000e+00 649.0
24 TraesCS2A01G259400 chr7B 82.280 649 52 21 1 617 496298989 496299606 2.880000e-138 503.0
25 TraesCS2A01G259400 chr7B 93.976 83 5 0 1 83 593519921 593520003 7.280000e-25 126.0
26 TraesCS2A01G259400 chr6B 78.947 551 55 22 102 617 27050004 27049480 1.120000e-82 318.0
27 TraesCS2A01G259400 chr4B 86.709 158 20 1 6649 6805 588607995 588608152 2.560000e-39 174.0
28 TraesCS2A01G259400 chr4B 86.076 158 21 1 6649 6805 618362867 618363024 1.190000e-37 169.0
29 TraesCS2A01G259400 chr4B 91.954 87 6 1 2136 2221 127851432 127851346 3.390000e-23 121.0
30 TraesCS2A01G259400 chr7D 86.076 158 21 1 6649 6805 63899360 63899203 1.190000e-37 169.0
31 TraesCS2A01G259400 chr7D 86.076 158 21 1 6649 6805 370734149 370733992 1.190000e-37 169.0
32 TraesCS2A01G259400 chr7D 95.122 41 1 1 2319 2359 427001190 427001229 5.790000e-06 63.9
33 TraesCS2A01G259400 chr3A 86.076 158 21 1 6649 6805 668546432 668546589 1.190000e-37 169.0
34 TraesCS2A01G259400 chr3A 93.182 44 1 2 2322 2365 621324909 621324868 5.790000e-06 63.9
35 TraesCS2A01G259400 chr1B 86.076 158 21 1 6649 6805 643160172 643160329 1.190000e-37 169.0
36 TraesCS2A01G259400 chrUn 85.443 158 22 1 6649 6805 373698333 373698176 5.550000e-36 163.0
37 TraesCS2A01G259400 chr4D 90.385 52 3 2 2319 2370 28974983 28975032 4.480000e-07 67.6
38 TraesCS2A01G259400 chr4A 91.837 49 2 2 2322 2370 574548442 574548396 4.480000e-07 67.6
39 TraesCS2A01G259400 chr7A 87.037 54 6 1 2321 2374 213113489 213113437 7.490000e-05 60.2
40 TraesCS2A01G259400 chr3D 90.909 44 2 2 2322 2365 477907391 477907350 2.690000e-04 58.4
41 TraesCS2A01G259400 chr3B 90.909 44 2 2 2322 2365 637089729 637089688 2.690000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G259400 chr2A 407370144 407377060 6916 False 12774.00 12774 100.0000 1 6917 1 chr2A.!!$F2 6916
1 TraesCS2A01G259400 chr2A 737853932 737854453 521 False 287.00 287 77.9200 104 617 1 chr2A.!!$F3 513
2 TraesCS2A01G259400 chr2A 737895392 737895915 523 False 279.00 279 77.6360 102 617 1 chr2A.!!$F4 515
3 TraesCS2A01G259400 chr2D 323087253 323093812 6559 True 2267.25 6082 93.3395 898 6796 4 chr2D.!!$R2 5898
4 TraesCS2A01G259400 chr2B 390941079 390947830 6751 True 2012.00 5607 90.1880 618 6315 4 chr2B.!!$R2 5697
5 TraesCS2A01G259400 chr2B 506351831 506352449 618 False 693.00 693 87.2410 1 611 1 chr2B.!!$F2 610
6 TraesCS2A01G259400 chr2B 21225809 21226336 527 False 320.00 320 78.9190 102 621 1 chr2B.!!$F1 519
7 TraesCS2A01G259400 chr1D 341277853 341278474 621 True 778.00 778 89.5240 1 617 1 chr1D.!!$R2 616
8 TraesCS2A01G259400 chr1A 19519451 19520086 635 True 736.00 736 87.9070 1 628 1 chr1A.!!$R1 627
9 TraesCS2A01G259400 chr7B 702437119 702437741 622 True 688.00 688 87.0050 15 628 1 chr7B.!!$R1 613
10 TraesCS2A01G259400 chr7B 496298989 496299606 617 False 503.00 503 82.2800 1 617 1 chr7B.!!$F1 616
11 TraesCS2A01G259400 chr7B 593519921 593520877 956 False 387.50 649 89.8020 1 627 2 chr7B.!!$F2 626
12 TraesCS2A01G259400 chr6B 27049480 27050004 524 True 318.00 318 78.9470 102 617 1 chr6B.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 786 0.040646 TCAGGAGAAGGGAACGGCTA 59.959 55.000 0.00 0.00 0.00 3.93 F
755 1111 0.041576 GGTCTTTGTCCAAACGCGTC 60.042 55.000 14.44 0.00 0.00 5.19 F
863 2353 0.257328 TGCAAAGTTGTCAGGGGTCA 59.743 50.000 0.00 0.00 0.00 4.02 F
1841 3377 0.694444 AGTGTGGTGTGGAGGGACTT 60.694 55.000 0.00 0.00 41.55 3.01 F
3456 5000 1.134310 TCAGTTGATCATGCCGCTGAT 60.134 47.619 0.00 5.36 38.57 2.90 F
3884 5428 0.249573 CCAGTTGCCACTTGCTTTGG 60.250 55.000 0.00 0.00 42.00 3.28 F
4552 6096 0.804156 GCGTAACTGCAGGAGCTCTC 60.804 60.000 19.93 3.76 42.74 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 3964 0.107752 TGAGCAATCTGGCACGCATA 60.108 50.000 0.00 0.0 35.83 3.14 R
2590 4132 3.104843 AGAGGCAGCGATAAGTTGATC 57.895 47.619 0.00 0.0 32.33 2.92 R
2611 4153 5.249163 CCAGATGTATGATGGGATTACTCCA 59.751 44.000 1.05 0.0 44.08 3.86 R
3724 5268 0.250513 GAGCGACCTCCTGAACCATT 59.749 55.000 0.00 0.0 31.68 3.16 R
5295 6854 0.316204 CAGCAAGGTTTGGCAAGAGG 59.684 55.000 0.00 0.0 0.00 3.69 R
5479 7038 0.827507 TTCACCAAAGGGCCTGAAGC 60.828 55.000 6.92 0.0 42.60 3.86 R
6084 8440 1.625818 ACTGAGCAACCTTCTTCGGAT 59.374 47.619 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 361 9.118300 AGAATTTGCTCAAATATCTGTTCCTAG 57.882 33.333 8.11 0.00 39.88 3.02
52 365 7.365497 TGCTCAAATATCTGTTCCTAGATCA 57.635 36.000 0.00 0.00 38.35 2.92
133 448 8.845227 TCATGAAAAAGAAGTTGTAGCACAATA 58.155 29.630 0.00 0.00 40.59 1.90
239 557 1.216178 CTTTGGCAAATCCCAGGCG 59.784 57.895 13.89 0.00 36.00 5.52
353 673 0.751277 CCCCTATGTCGCCATTGCAA 60.751 55.000 0.00 0.00 37.32 4.08
380 700 2.940994 CGAGGTCTCTAGATCTGGGA 57.059 55.000 5.18 2.81 35.24 4.37
445 786 0.040646 TCAGGAGAAGGGAACGGCTA 59.959 55.000 0.00 0.00 0.00 3.93
468 822 2.034221 GGACCAGGTGGAGTTGGC 59.966 66.667 0.00 0.00 38.03 4.52
534 889 0.318360 GGTGGGTTTCCTTTTTCGCG 60.318 55.000 0.00 0.00 0.00 5.87
536 891 1.728074 GGGTTTCCTTTTTCGCGCG 60.728 57.895 26.76 26.76 0.00 6.86
537 892 1.728074 GGTTTCCTTTTTCGCGCGG 60.728 57.895 31.69 13.41 0.00 6.46
538 893 1.728074 GTTTCCTTTTTCGCGCGGG 60.728 57.895 31.69 22.53 0.00 6.13
569 925 2.891191 AACCTTCCTTTTATGGCCGA 57.109 45.000 0.00 0.00 0.00 5.54
619 975 0.333993 ACTCCCTAGCCACGTCCTTA 59.666 55.000 0.00 0.00 0.00 2.69
622 978 2.036089 CTCCCTAGCCACGTCCTTATTC 59.964 54.545 0.00 0.00 0.00 1.75
657 1013 4.209538 TCCATCCCACTAATCAAATGCAG 58.790 43.478 0.00 0.00 0.00 4.41
662 1018 4.458989 TCCCACTAATCAAATGCAGTTGAC 59.541 41.667 29.76 0.00 40.22 3.18
666 1022 5.181811 CACTAATCAAATGCAGTTGACCAGA 59.818 40.000 30.70 18.15 40.22 3.86
717 1073 1.934589 CATGCATGCACAAATGGAGG 58.065 50.000 25.37 0.00 30.90 4.30
726 1082 3.831333 TGCACAAATGGAGGCTCAAAATA 59.169 39.130 17.69 0.00 0.00 1.40
727 1083 4.082081 TGCACAAATGGAGGCTCAAAATAG 60.082 41.667 17.69 3.81 0.00 1.73
730 1086 4.706962 ACAAATGGAGGCTCAAAATAGACC 59.293 41.667 17.69 0.00 0.00 3.85
747 1103 4.323477 CCGCCCGGTCTTTGTCCA 62.323 66.667 0.00 0.00 0.00 4.02
750 1106 1.658114 GCCCGGTCTTTGTCCAAAC 59.342 57.895 0.00 0.00 0.00 2.93
755 1111 0.041576 GGTCTTTGTCCAAACGCGTC 60.042 55.000 14.44 0.00 0.00 5.19
758 1114 3.170810 TTTGTCCAAACGCGTCCGC 62.171 57.895 14.44 0.68 38.22 5.54
768 1124 4.021650 GCGTCCGCGGATATTTCA 57.978 55.556 33.58 3.00 38.78 2.69
769 1125 1.853319 GCGTCCGCGGATATTTCAG 59.147 57.895 33.58 16.74 38.78 3.02
770 1126 1.557443 GCGTCCGCGGATATTTCAGG 61.557 60.000 33.58 13.65 38.78 3.86
771 1127 0.944311 CGTCCGCGGATATTTCAGGG 60.944 60.000 33.58 8.29 0.00 4.45
772 1128 0.602905 GTCCGCGGATATTTCAGGGG 60.603 60.000 33.58 11.80 46.84 4.79
776 1132 1.270839 CGCGGATATTTCAGGGGTCAT 60.271 52.381 0.00 0.00 0.00 3.06
783 1139 6.314917 GGATATTTCAGGGGTCATATTTGGT 58.685 40.000 0.00 0.00 0.00 3.67
788 1144 5.110814 TCAGGGGTCATATTTGGTTACTG 57.889 43.478 0.00 0.00 0.00 2.74
790 1146 5.727279 TCAGGGGTCATATTTGGTTACTGTA 59.273 40.000 0.00 0.00 0.00 2.74
794 1150 7.792736 AGGGGTCATATTTGGTTACTGTAGATA 59.207 37.037 0.00 0.00 0.00 1.98
803 1159 6.754702 TGGTTACTGTAGATACTCTGACAC 57.245 41.667 0.00 0.00 0.00 3.67
805 1161 5.220815 GGTTACTGTAGATACTCTGACACCG 60.221 48.000 0.00 0.00 0.00 4.94
807 1163 4.783055 ACTGTAGATACTCTGACACCGAT 58.217 43.478 0.00 0.00 0.00 4.18
808 1164 5.926663 ACTGTAGATACTCTGACACCGATA 58.073 41.667 0.00 0.00 0.00 2.92
809 1165 6.354938 ACTGTAGATACTCTGACACCGATAA 58.645 40.000 0.00 0.00 0.00 1.75
810 1166 6.827251 ACTGTAGATACTCTGACACCGATAAA 59.173 38.462 0.00 0.00 0.00 1.40
821 2311 7.106890 TCTGACACCGATAAATACCAAATTCA 58.893 34.615 0.00 0.00 0.00 2.57
826 2316 8.581578 ACACCGATAAATACCAAATTCAGTTTT 58.418 29.630 0.00 0.00 0.00 2.43
839 2329 7.177392 CCAAATTCAGTTTTCAGGAGAATACCT 59.823 37.037 0.00 0.00 41.43 3.08
840 2330 8.579863 CAAATTCAGTTTTCAGGAGAATACCTT 58.420 33.333 0.00 0.00 38.32 3.50
841 2331 9.807921 AAATTCAGTTTTCAGGAGAATACCTTA 57.192 29.630 0.00 0.00 38.32 2.69
842 2332 9.454859 AATTCAGTTTTCAGGAGAATACCTTAG 57.545 33.333 0.00 0.00 38.32 2.18
843 2333 6.947464 TCAGTTTTCAGGAGAATACCTTAGG 58.053 40.000 0.00 0.00 38.32 2.69
844 2334 6.500751 TCAGTTTTCAGGAGAATACCTTAGGT 59.499 38.462 9.57 9.57 38.32 3.08
845 2335 6.595716 CAGTTTTCAGGAGAATACCTTAGGTG 59.404 42.308 15.13 0.00 38.32 4.00
846 2336 4.755266 TTCAGGAGAATACCTTAGGTGC 57.245 45.455 15.13 3.44 38.32 5.01
847 2337 3.719871 TCAGGAGAATACCTTAGGTGCA 58.280 45.455 15.13 0.00 38.32 4.57
848 2338 4.101114 TCAGGAGAATACCTTAGGTGCAA 58.899 43.478 15.13 0.00 38.32 4.08
849 2339 4.534500 TCAGGAGAATACCTTAGGTGCAAA 59.466 41.667 15.13 0.00 38.32 3.68
850 2340 4.878397 CAGGAGAATACCTTAGGTGCAAAG 59.122 45.833 15.13 0.00 38.32 2.77
851 2341 4.536489 AGGAGAATACCTTAGGTGCAAAGT 59.464 41.667 15.13 0.00 36.86 2.66
852 2342 5.014228 AGGAGAATACCTTAGGTGCAAAGTT 59.986 40.000 15.13 0.00 36.86 2.66
853 2343 5.123979 GGAGAATACCTTAGGTGCAAAGTTG 59.876 44.000 15.13 0.00 36.19 3.16
854 2344 5.631119 AGAATACCTTAGGTGCAAAGTTGT 58.369 37.500 15.13 0.00 36.19 3.32
855 2345 5.705905 AGAATACCTTAGGTGCAAAGTTGTC 59.294 40.000 15.13 0.00 36.19 3.18
856 2346 3.290948 ACCTTAGGTGCAAAGTTGTCA 57.709 42.857 1.74 0.00 32.98 3.58
857 2347 3.214328 ACCTTAGGTGCAAAGTTGTCAG 58.786 45.455 1.74 0.00 32.98 3.51
858 2348 2.554032 CCTTAGGTGCAAAGTTGTCAGG 59.446 50.000 0.00 0.00 0.00 3.86
859 2349 2.270352 TAGGTGCAAAGTTGTCAGGG 57.730 50.000 0.00 0.00 0.00 4.45
860 2350 0.468029 AGGTGCAAAGTTGTCAGGGG 60.468 55.000 0.00 0.00 0.00 4.79
861 2351 0.755327 GGTGCAAAGTTGTCAGGGGT 60.755 55.000 0.00 0.00 0.00 4.95
862 2352 0.668535 GTGCAAAGTTGTCAGGGGTC 59.331 55.000 0.00 0.00 0.00 4.46
863 2353 0.257328 TGCAAAGTTGTCAGGGGTCA 59.743 50.000 0.00 0.00 0.00 4.02
864 2354 1.133513 TGCAAAGTTGTCAGGGGTCAT 60.134 47.619 0.00 0.00 0.00 3.06
865 2355 2.107378 TGCAAAGTTGTCAGGGGTCATA 59.893 45.455 0.00 0.00 0.00 2.15
866 2356 3.245229 TGCAAAGTTGTCAGGGGTCATAT 60.245 43.478 0.00 0.00 0.00 1.78
867 2357 3.763897 GCAAAGTTGTCAGGGGTCATATT 59.236 43.478 0.00 0.00 0.00 1.28
868 2358 4.220602 GCAAAGTTGTCAGGGGTCATATTT 59.779 41.667 0.00 0.00 0.00 1.40
869 2359 5.713025 CAAAGTTGTCAGGGGTCATATTTG 58.287 41.667 0.00 0.00 0.00 2.32
870 2360 3.968265 AGTTGTCAGGGGTCATATTTGG 58.032 45.455 0.00 0.00 0.00 3.28
871 2361 3.333680 AGTTGTCAGGGGTCATATTTGGT 59.666 43.478 0.00 0.00 0.00 3.67
872 2362 4.086457 GTTGTCAGGGGTCATATTTGGTT 58.914 43.478 0.00 0.00 0.00 3.67
873 2363 5.014755 AGTTGTCAGGGGTCATATTTGGTTA 59.985 40.000 0.00 0.00 0.00 2.85
874 2364 4.850680 TGTCAGGGGTCATATTTGGTTAC 58.149 43.478 0.00 0.00 0.00 2.50
875 2365 4.538490 TGTCAGGGGTCATATTTGGTTACT 59.462 41.667 0.00 0.00 0.00 2.24
876 2366 4.881850 GTCAGGGGTCATATTTGGTTACTG 59.118 45.833 0.00 0.00 0.00 2.74
877 2367 4.538490 TCAGGGGTCATATTTGGTTACTGT 59.462 41.667 0.00 0.00 0.00 3.55
878 2368 5.727279 TCAGGGGTCATATTTGGTTACTGTA 59.273 40.000 0.00 0.00 0.00 2.74
879 2369 6.055588 CAGGGGTCATATTTGGTTACTGTAG 58.944 44.000 0.00 0.00 0.00 2.74
880 2370 5.968167 AGGGGTCATATTTGGTTACTGTAGA 59.032 40.000 0.00 0.00 0.00 2.59
881 2371 6.619852 AGGGGTCATATTTGGTTACTGTAGAT 59.380 38.462 0.00 0.00 0.00 1.98
882 2372 7.792736 AGGGGTCATATTTGGTTACTGTAGATA 59.207 37.037 0.00 0.00 0.00 1.98
883 2373 7.876582 GGGGTCATATTTGGTTACTGTAGATAC 59.123 40.741 0.00 0.00 0.00 2.24
884 2374 8.648693 GGGTCATATTTGGTTACTGTAGATACT 58.351 37.037 0.00 0.00 0.00 2.12
885 2375 9.694137 GGTCATATTTGGTTACTGTAGATACTC 57.306 37.037 0.00 0.00 0.00 2.59
890 2380 7.770366 TTTGGTTACTGTAGATACTCTGACA 57.230 36.000 0.00 0.00 0.00 3.58
891 2381 6.754702 TGGTTACTGTAGATACTCTGACAC 57.245 41.667 0.00 0.00 0.00 3.67
892 2382 5.651139 TGGTTACTGTAGATACTCTGACACC 59.349 44.000 0.00 0.00 0.00 4.16
893 2383 5.220815 GGTTACTGTAGATACTCTGACACCG 60.221 48.000 0.00 0.00 0.00 4.94
894 2384 4.217836 ACTGTAGATACTCTGACACCGA 57.782 45.455 0.00 0.00 0.00 4.69
895 2385 4.783055 ACTGTAGATACTCTGACACCGAT 58.217 43.478 0.00 0.00 0.00 4.18
896 2386 5.926663 ACTGTAGATACTCTGACACCGATA 58.073 41.667 0.00 0.00 0.00 2.92
913 2403 8.117813 ACACCGATAAATACCAAATTCAGTTT 57.882 30.769 0.00 0.00 0.00 2.66
914 2404 8.581578 ACACCGATAAATACCAAATTCAGTTTT 58.418 29.630 0.00 0.00 0.00 2.43
915 2405 9.072294 CACCGATAAATACCAAATTCAGTTTTC 57.928 33.333 0.00 0.00 0.00 2.29
921 2411 8.477419 AAATACCAAATTCAGTTTTCAGGAGA 57.523 30.769 0.00 0.00 0.00 3.71
924 2414 9.753674 ATACCAAATTCAGTTTTCAGGAGAATA 57.246 29.630 0.00 0.00 32.89 1.75
925 2415 7.886338 ACCAAATTCAGTTTTCAGGAGAATAC 58.114 34.615 0.00 0.00 36.37 1.89
927 2417 7.177392 CCAAATTCAGTTTTCAGGAGAATACCT 59.823 37.037 0.00 0.00 41.43 3.08
930 2420 9.454859 AATTCAGTTTTCAGGAGAATACCTTAG 57.545 33.333 0.00 0.00 38.32 2.18
932 2422 6.500751 TCAGTTTTCAGGAGAATACCTTAGGT 59.499 38.462 9.57 9.57 38.32 3.08
944 2434 3.290948 ACCTTAGGTGCAAAGTTGTCA 57.709 42.857 1.74 0.00 32.98 3.58
1018 2508 1.134610 CCTTTACCCTCCGCACGTTAT 60.135 52.381 0.00 0.00 0.00 1.89
1227 2720 3.618351 CGGAGAGGAGAAGGTAACACTA 58.382 50.000 0.00 0.00 41.41 2.74
1228 2721 3.628487 CGGAGAGGAGAAGGTAACACTAG 59.372 52.174 0.00 0.00 41.41 2.57
1229 2722 3.382227 GGAGAGGAGAAGGTAACACTAGC 59.618 52.174 0.00 0.00 41.41 3.42
1230 2723 4.274978 GAGAGGAGAAGGTAACACTAGCT 58.725 47.826 0.00 0.00 37.47 3.32
1231 2724 4.679331 AGAGGAGAAGGTAACACTAGCTT 58.321 43.478 0.00 0.00 46.18 3.74
1239 2732 6.673839 AAGGTAACACTAGCTTCTTCTTCT 57.326 37.500 0.00 0.00 41.01 2.85
1240 2733 6.673839 AGGTAACACTAGCTTCTTCTTCTT 57.326 37.500 0.00 0.00 41.41 2.52
1241 2734 6.693466 AGGTAACACTAGCTTCTTCTTCTTC 58.307 40.000 0.00 0.00 41.41 2.87
1242 2735 6.495526 AGGTAACACTAGCTTCTTCTTCTTCT 59.504 38.462 0.00 0.00 41.41 2.85
1243 2736 7.015779 AGGTAACACTAGCTTCTTCTTCTTCTT 59.984 37.037 0.00 0.00 41.41 2.52
1244 2737 7.329962 GGTAACACTAGCTTCTTCTTCTTCTTC 59.670 40.741 0.00 0.00 0.00 2.87
1245 2738 6.664428 ACACTAGCTTCTTCTTCTTCTTCT 57.336 37.500 0.00 0.00 0.00 2.85
1265 2758 8.885494 TCTTCTTCTTCTTCTTCTTCTTCTTG 57.115 34.615 0.00 0.00 0.00 3.02
1295 2812 7.121382 TCGTCTCCTTCCCTTAGTTAGATTTA 58.879 38.462 0.00 0.00 0.00 1.40
1322 2839 2.741228 GCGGTTTCATGATCTCTGCTCT 60.741 50.000 14.62 0.00 0.00 4.09
1324 2841 4.798924 GCGGTTTCATGATCTCTGCTCTAT 60.799 45.833 14.62 0.00 0.00 1.98
1537 3055 2.024176 AGCTGTACGGTGGCTTAATG 57.976 50.000 3.10 0.00 31.81 1.90
1538 3056 1.014352 GCTGTACGGTGGCTTAATGG 58.986 55.000 3.10 0.00 0.00 3.16
1539 3057 1.406341 GCTGTACGGTGGCTTAATGGA 60.406 52.381 3.10 0.00 0.00 3.41
1561 3081 2.316119 AGAATTGCGACGCTGTTTTC 57.684 45.000 22.08 16.56 0.00 2.29
1568 3097 1.397315 GCGACGCTGTTTTCTCTTGAC 60.397 52.381 13.73 0.00 0.00 3.18
1698 3231 5.067674 AGCAGTGCAAAAGTTGTATCTTTCA 59.932 36.000 19.20 0.00 36.75 2.69
1778 3313 1.060163 ATGGGAACGGGGATACAGGG 61.060 60.000 0.00 0.00 39.74 4.45
1841 3377 0.694444 AGTGTGGTGTGGAGGGACTT 60.694 55.000 0.00 0.00 41.55 3.01
1946 3482 7.222000 TCTTGTCCTTTTTGTTACAACTTGT 57.778 32.000 0.00 0.00 0.00 3.16
1949 3485 9.413048 CTTGTCCTTTTTGTTACAACTTGTAAA 57.587 29.630 14.63 0.87 43.57 2.01
2020 3556 7.994425 TTGCTTGGACTTGTTATAATCTCAA 57.006 32.000 0.00 0.00 0.00 3.02
2107 3648 3.191371 CAGTTTCAGTTGAATGTAGGCCC 59.809 47.826 0.00 0.00 33.54 5.80
2146 3687 5.422331 TGATTCTCCTTTGGTACTACCTCTG 59.578 44.000 6.79 0.00 39.58 3.35
2218 3759 5.834460 TCCTACATTAGTGAACAGAGGGTA 58.166 41.667 0.00 0.00 0.00 3.69
2253 3794 7.863666 ACATCAACAATTAATGGTTGCTTTTG 58.136 30.769 25.15 20.53 43.06 2.44
2279 3821 7.803659 GGACTCAAAGTTAACTGCAAATAGTTC 59.196 37.037 9.34 3.11 41.01 3.01
2303 3845 7.061752 CGGCCTTTTGCTGTATATATTACTC 57.938 40.000 0.00 0.00 41.73 2.59
2304 3846 6.092259 CGGCCTTTTGCTGTATATATTACTCC 59.908 42.308 0.00 0.00 41.73 3.85
2305 3847 6.374613 GGCCTTTTGCTGTATATATTACTCCC 59.625 42.308 0.00 0.00 40.92 4.30
2306 3848 7.168905 GCCTTTTGCTGTATATATTACTCCCT 58.831 38.462 0.00 0.00 36.87 4.20
2307 3849 7.334671 GCCTTTTGCTGTATATATTACTCCCTC 59.665 40.741 0.00 0.00 36.87 4.30
2308 3850 7.824779 CCTTTTGCTGTATATATTACTCCCTCC 59.175 40.741 0.00 0.00 0.00 4.30
2309 3851 7.865530 TTTGCTGTATATATTACTCCCTCCA 57.134 36.000 0.00 0.00 0.00 3.86
2310 3852 8.449423 TTTGCTGTATATATTACTCCCTCCAT 57.551 34.615 0.00 0.00 0.00 3.41
2311 3853 9.555411 TTTGCTGTATATATTACTCCCTCCATA 57.445 33.333 0.00 0.00 0.00 2.74
2312 3854 8.534954 TGCTGTATATATTACTCCCTCCATAC 57.465 38.462 0.00 0.00 0.00 2.39
2313 3855 7.563924 TGCTGTATATATTACTCCCTCCATACC 59.436 40.741 0.00 0.00 0.00 2.73
2314 3856 7.563924 GCTGTATATATTACTCCCTCCATACCA 59.436 40.741 0.00 0.00 0.00 3.25
2315 3857 9.488762 CTGTATATATTACTCCCTCCATACCAA 57.511 37.037 0.00 0.00 0.00 3.67
2316 3858 9.846725 TGTATATATTACTCCCTCCATACCAAA 57.153 33.333 0.00 0.00 0.00 3.28
2325 3867 8.996651 ACTCCCTCCATACCAAAATATAAAAG 57.003 34.615 0.00 0.00 0.00 2.27
2326 3868 8.787818 ACTCCCTCCATACCAAAATATAAAAGA 58.212 33.333 0.00 0.00 0.00 2.52
2327 3869 9.813826 CTCCCTCCATACCAAAATATAAAAGAT 57.186 33.333 0.00 0.00 0.00 2.40
2328 3870 9.586732 TCCCTCCATACCAAAATATAAAAGATG 57.413 33.333 0.00 0.00 0.00 2.90
2329 3871 9.367160 CCCTCCATACCAAAATATAAAAGATGT 57.633 33.333 0.00 0.00 0.00 3.06
2349 3891 9.838339 AAGATGTCTTATATTTTGGTACAGAGG 57.162 33.333 0.00 0.00 34.85 3.69
2350 3892 8.993424 AGATGTCTTATATTTTGGTACAGAGGT 58.007 33.333 0.00 0.00 42.39 3.85
2410 3952 6.360681 GGAACATTTCAAGTCAAGATTTCACG 59.639 38.462 0.00 0.00 0.00 4.35
2417 3959 6.046593 TCAAGTCAAGATTTCACGTGTTAGT 58.953 36.000 16.51 1.70 0.00 2.24
2422 3964 7.656137 AGTCAAGATTTCACGTGTTAGTGTATT 59.344 33.333 16.51 0.00 42.40 1.89
2464 4006 3.249559 CACTCTTCTTGTTTCTGCAGGAC 59.750 47.826 15.13 13.52 0.00 3.85
2493 4035 4.381411 GACTATATGCAACCTCCTGGAAC 58.619 47.826 0.00 0.00 37.04 3.62
2590 4132 2.409378 GTGGATTTGCAACAATTCTGCG 59.591 45.455 0.00 0.00 42.97 5.18
2611 4153 3.462021 GATCAACTTATCGCTGCCTCTT 58.538 45.455 0.00 0.00 0.00 2.85
2688 4230 7.747155 TTGTTGATTACGGTTAATTGAGGAA 57.253 32.000 0.00 0.00 0.00 3.36
2834 4376 7.778382 AGTTGACTTATGGTTAGGTTTTTCTGT 59.222 33.333 0.00 0.00 0.00 3.41
2960 4504 5.483937 AGTTTCCCAAATATCTTTGTTCCCC 59.516 40.000 3.23 0.00 40.15 4.81
2978 4522 3.009805 TCCCCTTTTGTACTTTAGGAGGC 59.990 47.826 8.67 0.00 0.00 4.70
3006 4550 3.135348 TGCTAGCAGATAAGACCATGCTT 59.865 43.478 14.93 0.00 46.46 3.91
3064 4608 4.021104 TGAAGTTCACTACTGGATCAGTGG 60.021 45.833 10.46 9.89 45.01 4.00
3195 4739 3.349022 TGCATGCTCTGATGATGACAAA 58.651 40.909 20.33 0.00 0.00 2.83
3456 5000 1.134310 TCAGTTGATCATGCCGCTGAT 60.134 47.619 0.00 5.36 38.57 2.90
3483 5027 3.201290 CAGGCATCACTCTTATGACCAC 58.799 50.000 0.00 0.00 32.36 4.16
3636 5180 6.039382 GTGAAAAGGTTGATTACTTGAGTGGT 59.961 38.462 0.00 0.00 0.00 4.16
3709 5253 3.300388 TCTTCGCCAGGTATCTCTGAAT 58.700 45.455 0.00 0.00 36.93 2.57
3710 5254 3.706594 TCTTCGCCAGGTATCTCTGAATT 59.293 43.478 0.00 0.00 36.93 2.17
3789 5333 1.833630 TCCTCTGCAAGTGTAGATGGG 59.166 52.381 0.00 0.00 36.24 4.00
3811 5355 2.278245 AGTTTGTGAGGGATGGGATGA 58.722 47.619 0.00 0.00 0.00 2.92
3855 5399 7.470935 TGGCAAATATATTGCTGCTGATAAT 57.529 32.000 17.49 0.00 44.36 1.28
3874 5418 0.401356 TTCAGCTCATCCAGTTGCCA 59.599 50.000 0.00 0.00 33.38 4.92
3881 5425 0.963962 CATCCAGTTGCCACTTGCTT 59.036 50.000 0.00 0.00 42.00 3.91
3884 5428 0.249573 CCAGTTGCCACTTGCTTTGG 60.250 55.000 0.00 0.00 42.00 3.28
4010 5554 4.462483 TGACATGCCTAATTTGAAGAACCC 59.538 41.667 0.00 0.00 0.00 4.11
4058 5602 4.036734 GGAAGCTGAACACAATGAAACTGA 59.963 41.667 0.00 0.00 0.00 3.41
4090 5634 2.839486 TCAGCATTTTGACGAGGACT 57.161 45.000 0.00 0.00 0.00 3.85
4231 5775 3.454375 ACAAAATATAGCGAGTCGGTGG 58.546 45.455 26.46 9.56 38.30 4.61
4410 5954 4.273318 GGCTGTTGAACTTATCAGGGAAT 58.727 43.478 0.00 0.00 39.77 3.01
4424 5968 8.561536 TTATCAGGGAATTCAATAGGTGAGTA 57.438 34.615 7.93 0.00 37.61 2.59
4552 6096 0.804156 GCGTAACTGCAGGAGCTCTC 60.804 60.000 19.93 3.76 42.74 3.20
4585 6129 3.325870 TCACATGTTAAGCCTGTCGAAG 58.674 45.455 0.00 0.00 0.00 3.79
5007 6566 8.225107 TGCAGTTAATGACAGTATAAAACGAAC 58.775 33.333 0.00 0.00 0.00 3.95
5172 6731 1.001378 GACTTGCGCCACAACAAGATT 60.001 47.619 4.18 0.00 44.89 2.40
5295 6854 3.261137 ACCTGAAGAAGTACCTGTTAGGC 59.739 47.826 0.00 0.00 39.63 3.93
5479 7038 2.438975 ATGCCCGTCCTGCACATG 60.439 61.111 0.00 0.00 42.38 3.21
5559 7118 3.858877 GCTCTAGACCAGTGGAATATGCG 60.859 52.174 18.40 0.00 0.00 4.73
5601 7160 6.616237 AAGCAAATTCAGATGGAGGAAAAT 57.384 33.333 0.00 0.00 0.00 1.82
5611 7170 2.151202 TGGAGGAAAATTCGCAGTGAC 58.849 47.619 0.00 0.00 0.00 3.67
5619 7178 2.696989 ATTCGCAGTGACATCATCCA 57.303 45.000 0.00 0.00 0.00 3.41
5850 7416 3.438781 TCTGTGAATTGAATTGGTACCGC 59.561 43.478 7.57 0.00 0.00 5.68
6111 8467 4.092116 AGAAGGTTGCTCAGTTTAAGCT 57.908 40.909 0.00 0.00 40.50 3.74
6133 8489 9.509956 AAGCTAATTAGTTTGTGTAATGTGGTA 57.490 29.630 13.13 0.00 0.00 3.25
6206 8578 5.313712 TCTACTTGAAGTGATTTTGTCCCC 58.686 41.667 8.33 0.00 0.00 4.81
6210 8582 2.041081 TGAAGTGATTTTGTCCCCGGAT 59.959 45.455 0.73 0.00 0.00 4.18
6271 8643 8.803235 ACACAATTAAAAATAAGAGGGAAGGTC 58.197 33.333 0.00 0.00 0.00 3.85
6280 8652 0.338814 GAGGGAAGGTCAGGAGGGTA 59.661 60.000 0.00 0.00 0.00 3.69
6342 8714 4.319766 CGTGTTGAGTGGATTTTCTGAAGG 60.320 45.833 0.00 0.00 0.00 3.46
6353 8725 9.143631 GTGGATTTTCTGAAGGAAATTATGTTG 57.856 33.333 0.00 0.00 42.63 3.33
6370 8742 4.742438 TGTTGAAGCTCGGTTTTCATAC 57.258 40.909 0.00 0.00 33.68 2.39
6432 8805 4.566987 AGAGTGTGAGTCCGGTTTAATTC 58.433 43.478 0.00 0.00 0.00 2.17
6485 8858 4.862574 GGGGATTCTTTATTTTCACGTTGC 59.137 41.667 0.00 0.00 0.00 4.17
6538 8911 9.160496 AGTTTGTTGCAATAGTGAAATTCAAAA 57.840 25.926 0.59 0.00 0.00 2.44
6539 8912 9.934190 GTTTGTTGCAATAGTGAAATTCAAAAT 57.066 25.926 0.59 0.00 0.00 1.82
6596 8969 8.472007 TCAAAATTAAGGTGACATAAACCAGT 57.528 30.769 0.00 0.00 40.40 4.00
6626 9001 7.268199 ACACTTGCATCATCATTAATACCAG 57.732 36.000 0.00 0.00 0.00 4.00
6637 9012 8.935844 TCATCATTAATACCAGTATCGATTTGC 58.064 33.333 1.71 0.00 0.00 3.68
6657 9032 9.439537 GATTTGCTTTACTAACTTATTGCTAGC 57.560 33.333 8.10 8.10 0.00 3.42
6664 9039 3.611766 AACTTATTGCTAGCGGTCACT 57.388 42.857 10.77 0.00 0.00 3.41
6673 9048 2.416836 GCTAGCGGTCACTATGTTGACA 60.417 50.000 0.00 0.00 46.68 3.58
6683 9058 6.597672 GGTCACTATGTTGACATTATTGGTGA 59.402 38.462 1.46 0.39 46.68 4.02
6705 9080 1.271656 CGTTTTCCCTCTACGGTCTGT 59.728 52.381 0.00 0.00 0.00 3.41
6711 9086 3.285484 TCCCTCTACGGTCTGTATGTTC 58.715 50.000 0.00 0.00 31.20 3.18
6713 9088 4.164796 TCCCTCTACGGTCTGTATGTTCTA 59.835 45.833 0.00 0.00 31.20 2.10
6715 9090 5.366460 CCTCTACGGTCTGTATGTTCTAGA 58.634 45.833 0.00 0.00 31.20 2.43
6718 9093 4.698583 ACGGTCTGTATGTTCTAGACAC 57.301 45.455 0.00 0.00 42.04 3.67
6725 9100 5.419155 TCTGTATGTTCTAGACACTCCTTGG 59.581 44.000 0.00 0.00 42.04 3.61
6805 9180 7.834881 TTCTTCTTGAAGGTAGTAGTCTTGA 57.165 36.000 10.08 0.00 0.00 3.02
6806 9181 7.216973 TCTTCTTGAAGGTAGTAGTCTTGAC 57.783 40.000 10.08 0.00 0.00 3.18
6807 9182 7.005296 TCTTCTTGAAGGTAGTAGTCTTGACT 58.995 38.462 8.41 8.41 0.00 3.41
6808 9183 6.821031 TCTTGAAGGTAGTAGTCTTGACTC 57.179 41.667 6.55 0.18 0.00 3.36
6809 9184 6.304624 TCTTGAAGGTAGTAGTCTTGACTCA 58.695 40.000 6.55 0.00 0.00 3.41
6810 9185 6.948886 TCTTGAAGGTAGTAGTCTTGACTCAT 59.051 38.462 6.55 0.33 0.00 2.90
6811 9186 6.516739 TGAAGGTAGTAGTCTTGACTCATG 57.483 41.667 6.55 0.00 0.00 3.07
6812 9187 6.010850 TGAAGGTAGTAGTCTTGACTCATGT 58.989 40.000 6.55 0.00 0.00 3.21
6813 9188 6.493802 TGAAGGTAGTAGTCTTGACTCATGTT 59.506 38.462 6.55 0.00 0.00 2.71
6814 9189 6.274157 AGGTAGTAGTCTTGACTCATGTTG 57.726 41.667 6.55 0.00 0.00 3.33
6815 9190 5.186021 AGGTAGTAGTCTTGACTCATGTTGG 59.814 44.000 6.55 0.00 0.00 3.77
6816 9191 4.543590 AGTAGTCTTGACTCATGTTGGG 57.456 45.455 6.55 0.00 0.00 4.12
6817 9192 2.191128 AGTCTTGACTCATGTTGGGC 57.809 50.000 0.00 0.00 0.00 5.36
6818 9193 1.421268 AGTCTTGACTCATGTTGGGCA 59.579 47.619 0.00 0.00 0.00 5.36
6819 9194 2.040813 AGTCTTGACTCATGTTGGGCAT 59.959 45.455 0.00 0.00 38.60 4.40
6820 9195 3.264193 AGTCTTGACTCATGTTGGGCATA 59.736 43.478 0.00 0.00 35.74 3.14
6821 9196 4.009675 GTCTTGACTCATGTTGGGCATAA 58.990 43.478 0.00 0.00 35.74 1.90
6822 9197 4.458989 GTCTTGACTCATGTTGGGCATAAA 59.541 41.667 0.00 0.00 35.74 1.40
6823 9198 5.048083 GTCTTGACTCATGTTGGGCATAAAA 60.048 40.000 0.00 0.00 35.74 1.52
6824 9199 4.782019 TGACTCATGTTGGGCATAAAAC 57.218 40.909 0.00 0.00 35.74 2.43
6825 9200 3.509575 TGACTCATGTTGGGCATAAAACC 59.490 43.478 0.00 0.00 35.74 3.27
6833 9208 1.037493 GGGCATAAAACCCGAATCCC 58.963 55.000 0.00 0.00 37.67 3.85
6834 9209 0.666374 GGCATAAAACCCGAATCCCG 59.334 55.000 0.00 0.00 38.18 5.14
6835 9210 1.670791 GCATAAAACCCGAATCCCGA 58.329 50.000 0.00 0.00 41.76 5.14
6836 9211 2.018515 GCATAAAACCCGAATCCCGAA 58.981 47.619 0.00 0.00 41.76 4.30
6837 9212 2.621526 GCATAAAACCCGAATCCCGAAT 59.378 45.455 0.00 0.00 41.76 3.34
6838 9213 3.304458 GCATAAAACCCGAATCCCGAATC 60.304 47.826 0.00 0.00 41.76 2.52
6839 9214 1.758936 AAAACCCGAATCCCGAATCC 58.241 50.000 0.00 0.00 41.76 3.01
6840 9215 0.106868 AAACCCGAATCCCGAATCCC 60.107 55.000 0.00 0.00 41.76 3.85
6841 9216 2.030562 CCCGAATCCCGAATCCCG 59.969 66.667 0.00 0.00 41.76 5.14
6842 9217 2.504274 CCCGAATCCCGAATCCCGA 61.504 63.158 0.00 0.00 41.76 5.14
6843 9218 1.444250 CCGAATCCCGAATCCCGAA 59.556 57.895 0.00 0.00 41.76 4.30
6844 9219 0.878961 CCGAATCCCGAATCCCGAAC 60.879 60.000 0.00 0.00 41.76 3.95
6845 9220 0.878961 CGAATCCCGAATCCCGAACC 60.879 60.000 0.00 0.00 41.76 3.62
6846 9221 0.468648 GAATCCCGAATCCCGAACCT 59.531 55.000 0.00 0.00 41.76 3.50
6847 9222 0.180406 AATCCCGAATCCCGAACCTG 59.820 55.000 0.00 0.00 41.76 4.00
6848 9223 0.689745 ATCCCGAATCCCGAACCTGA 60.690 55.000 0.00 0.00 41.76 3.86
6849 9224 0.905809 TCCCGAATCCCGAACCTGAA 60.906 55.000 0.00 0.00 41.76 3.02
6850 9225 0.035820 CCCGAATCCCGAACCTGAAA 60.036 55.000 0.00 0.00 41.76 2.69
6851 9226 1.612199 CCCGAATCCCGAACCTGAAAA 60.612 52.381 0.00 0.00 41.76 2.29
6852 9227 1.467342 CCGAATCCCGAACCTGAAAAC 59.533 52.381 0.00 0.00 41.76 2.43
6853 9228 1.467342 CGAATCCCGAACCTGAAAACC 59.533 52.381 0.00 0.00 41.76 3.27
6854 9229 1.816835 GAATCCCGAACCTGAAAACCC 59.183 52.381 0.00 0.00 0.00 4.11
6855 9230 0.039180 ATCCCGAACCTGAAAACCCC 59.961 55.000 0.00 0.00 0.00 4.95
6856 9231 1.969589 CCCGAACCTGAAAACCCCG 60.970 63.158 0.00 0.00 0.00 5.73
6857 9232 1.071814 CCGAACCTGAAAACCCCGA 59.928 57.895 0.00 0.00 0.00 5.14
6858 9233 0.535553 CCGAACCTGAAAACCCCGAA 60.536 55.000 0.00 0.00 0.00 4.30
6859 9234 1.530323 CGAACCTGAAAACCCCGAAT 58.470 50.000 0.00 0.00 0.00 3.34
6860 9235 2.616001 CCGAACCTGAAAACCCCGAATA 60.616 50.000 0.00 0.00 0.00 1.75
6861 9236 3.075884 CGAACCTGAAAACCCCGAATAA 58.924 45.455 0.00 0.00 0.00 1.40
6862 9237 3.120095 CGAACCTGAAAACCCCGAATAAC 60.120 47.826 0.00 0.00 0.00 1.89
6863 9238 2.799017 ACCTGAAAACCCCGAATAACC 58.201 47.619 0.00 0.00 0.00 2.85
6864 9239 2.377531 ACCTGAAAACCCCGAATAACCT 59.622 45.455 0.00 0.00 0.00 3.50
6865 9240 2.752903 CCTGAAAACCCCGAATAACCTG 59.247 50.000 0.00 0.00 0.00 4.00
6866 9241 3.560453 CCTGAAAACCCCGAATAACCTGA 60.560 47.826 0.00 0.00 0.00 3.86
6867 9242 4.076394 CTGAAAACCCCGAATAACCTGAA 58.924 43.478 0.00 0.00 0.00 3.02
6868 9243 3.822167 TGAAAACCCCGAATAACCTGAAC 59.178 43.478 0.00 0.00 0.00 3.18
6869 9244 3.512219 AAACCCCGAATAACCTGAACA 57.488 42.857 0.00 0.00 0.00 3.18
6870 9245 2.484742 ACCCCGAATAACCTGAACAC 57.515 50.000 0.00 0.00 0.00 3.32
6871 9246 1.982958 ACCCCGAATAACCTGAACACT 59.017 47.619 0.00 0.00 0.00 3.55
6872 9247 3.175594 ACCCCGAATAACCTGAACACTA 58.824 45.455 0.00 0.00 0.00 2.74
6873 9248 3.778629 ACCCCGAATAACCTGAACACTAT 59.221 43.478 0.00 0.00 0.00 2.12
6874 9249 4.964262 ACCCCGAATAACCTGAACACTATA 59.036 41.667 0.00 0.00 0.00 1.31
6875 9250 5.605488 ACCCCGAATAACCTGAACACTATAT 59.395 40.000 0.00 0.00 0.00 0.86
6876 9251 6.164176 CCCCGAATAACCTGAACACTATATC 58.836 44.000 0.00 0.00 0.00 1.63
6877 9252 5.862323 CCCGAATAACCTGAACACTATATCG 59.138 44.000 0.00 0.00 0.00 2.92
6878 9253 5.862323 CCGAATAACCTGAACACTATATCGG 59.138 44.000 0.00 0.00 0.00 4.18
6879 9254 5.862323 CGAATAACCTGAACACTATATCGGG 59.138 44.000 0.00 0.00 45.82 5.14
6883 9258 4.175787 CCTGAACACTATATCGGGTAGC 57.824 50.000 0.00 0.00 37.33 3.58
6884 9259 3.572682 CCTGAACACTATATCGGGTAGCA 59.427 47.826 0.00 0.00 37.33 3.49
6885 9260 4.321304 CCTGAACACTATATCGGGTAGCAG 60.321 50.000 5.79 5.79 37.33 4.24
6886 9261 4.466827 TGAACACTATATCGGGTAGCAGA 58.533 43.478 0.00 0.00 0.00 4.26
6887 9262 5.077564 TGAACACTATATCGGGTAGCAGAT 58.922 41.667 12.18 12.18 0.00 2.90
6888 9263 5.183331 TGAACACTATATCGGGTAGCAGATC 59.817 44.000 10.90 0.00 0.00 2.75
6889 9264 4.924625 ACACTATATCGGGTAGCAGATCT 58.075 43.478 10.90 4.65 0.00 2.75
6890 9265 4.702612 ACACTATATCGGGTAGCAGATCTG 59.297 45.833 18.84 18.84 0.00 2.90
6891 9266 4.944317 CACTATATCGGGTAGCAGATCTGA 59.056 45.833 27.04 3.12 0.00 3.27
6892 9267 5.416013 CACTATATCGGGTAGCAGATCTGAA 59.584 44.000 27.04 10.46 0.00 3.02
6893 9268 6.010850 ACTATATCGGGTAGCAGATCTGAAA 58.989 40.000 27.04 10.07 0.00 2.69
6894 9269 5.808366 ATATCGGGTAGCAGATCTGAAAA 57.192 39.130 27.04 7.43 0.00 2.29
6895 9270 3.247006 TCGGGTAGCAGATCTGAAAAC 57.753 47.619 27.04 18.17 0.00 2.43
6896 9271 2.093658 TCGGGTAGCAGATCTGAAAACC 60.094 50.000 27.04 24.80 0.00 3.27
6897 9272 2.644676 GGGTAGCAGATCTGAAAACCC 58.355 52.381 29.69 29.69 39.44 4.11
6898 9273 2.280628 GGTAGCAGATCTGAAAACCCG 58.719 52.381 27.04 0.00 0.00 5.28
6899 9274 2.093658 GGTAGCAGATCTGAAAACCCGA 60.094 50.000 27.04 0.66 0.00 5.14
6900 9275 2.859165 AGCAGATCTGAAAACCCGAA 57.141 45.000 27.04 0.00 0.00 4.30
6901 9276 3.356529 AGCAGATCTGAAAACCCGAAT 57.643 42.857 27.04 0.00 0.00 3.34
6902 9277 3.690460 AGCAGATCTGAAAACCCGAATT 58.310 40.909 27.04 0.00 0.00 2.17
6903 9278 4.082125 AGCAGATCTGAAAACCCGAATTT 58.918 39.130 27.04 0.00 0.00 1.82
6904 9279 5.253330 AGCAGATCTGAAAACCCGAATTTA 58.747 37.500 27.04 0.00 0.00 1.40
6905 9280 5.710099 AGCAGATCTGAAAACCCGAATTTAA 59.290 36.000 27.04 0.00 0.00 1.52
6906 9281 6.378280 AGCAGATCTGAAAACCCGAATTTAAT 59.622 34.615 27.04 0.00 0.00 1.40
6907 9282 7.556275 AGCAGATCTGAAAACCCGAATTTAATA 59.444 33.333 27.04 0.00 0.00 0.98
6908 9283 8.352942 GCAGATCTGAAAACCCGAATTTAATAT 58.647 33.333 27.04 0.00 0.00 1.28
6909 9284 9.669353 CAGATCTGAAAACCCGAATTTAATATG 57.331 33.333 18.34 0.00 0.00 1.78
6910 9285 8.850156 AGATCTGAAAACCCGAATTTAATATGG 58.150 33.333 0.00 0.00 0.00 2.74
6911 9286 7.341445 TCTGAAAACCCGAATTTAATATGGG 57.659 36.000 11.45 11.45 45.70 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 412 5.703130 ACTTCTTTTTCATGAGTGCTAGTCC 59.297 40.000 0.00 0.00 0.00 3.85
187 503 4.043310 TGTCCTTGTTGATTCTTCCTGGAT 59.957 41.667 0.00 0.00 0.00 3.41
239 557 4.655963 TGCCCAGCTCTTCCATATAATTC 58.344 43.478 0.00 0.00 0.00 2.17
353 673 1.634459 TCTAGAGACCTCGGTTCACCT 59.366 52.381 0.00 0.00 34.09 4.00
380 700 1.423794 TTCTCCCCCAAGCCTCGTTT 61.424 55.000 0.00 0.00 0.00 3.60
534 889 3.974293 TTTTGGTCCCTCCCCCGC 61.974 66.667 0.00 0.00 34.77 6.13
536 891 1.736491 AAGGTTTTGGTCCCTCCCCC 61.736 60.000 0.00 0.00 34.77 5.40
537 892 0.251653 GAAGGTTTTGGTCCCTCCCC 60.252 60.000 0.00 0.00 34.77 4.81
538 893 0.251653 GGAAGGTTTTGGTCCCTCCC 60.252 60.000 0.00 0.00 34.77 4.30
541 896 3.414759 AAAAGGAAGGTTTTGGTCCCT 57.585 42.857 0.00 0.00 31.25 4.20
569 925 3.917300 CTCCCTAGTATTCCCTGACAGT 58.083 50.000 0.93 0.00 0.00 3.55
600 956 0.333993 TAAGGACGTGGCTAGGGAGT 59.666 55.000 0.00 0.00 0.00 3.85
628 984 4.883759 TGATTAGTGGGATGGAGAGAGAA 58.116 43.478 0.00 0.00 0.00 2.87
632 988 4.518211 GCATTTGATTAGTGGGATGGAGAG 59.482 45.833 0.00 0.00 0.00 3.20
636 992 3.956199 ACTGCATTTGATTAGTGGGATGG 59.044 43.478 0.00 0.00 0.00 3.51
639 995 4.458989 GTCAACTGCATTTGATTAGTGGGA 59.541 41.667 20.72 0.00 37.80 4.37
657 1013 3.314080 TGTTTCCGAATTGTCTGGTCAAC 59.686 43.478 0.00 0.00 0.00 3.18
662 1018 4.568152 ACTTTGTTTCCGAATTGTCTGG 57.432 40.909 0.00 0.00 0.00 3.86
666 1022 5.009310 GTCCCTTACTTTGTTTCCGAATTGT 59.991 40.000 0.00 0.00 0.00 2.71
717 1073 1.436983 CGGGCGGGTCTATTTTGAGC 61.437 60.000 0.00 0.00 0.00 4.26
730 1086 3.835790 TTGGACAAAGACCGGGCGG 62.836 63.158 6.32 0.00 42.03 6.13
755 1111 0.602905 GACCCCTGAAATATCCGCGG 60.603 60.000 22.12 22.12 0.00 6.46
758 1114 5.415701 CCAAATATGACCCCTGAAATATCCG 59.584 44.000 0.00 0.00 0.00 4.18
763 1119 6.607198 CAGTAACCAAATATGACCCCTGAAAT 59.393 38.462 0.00 0.00 0.00 2.17
764 1120 5.949354 CAGTAACCAAATATGACCCCTGAAA 59.051 40.000 0.00 0.00 0.00 2.69
765 1121 5.014755 ACAGTAACCAAATATGACCCCTGAA 59.985 40.000 0.00 0.00 0.00 3.02
766 1122 4.538490 ACAGTAACCAAATATGACCCCTGA 59.462 41.667 0.00 0.00 0.00 3.86
767 1123 4.855340 ACAGTAACCAAATATGACCCCTG 58.145 43.478 0.00 0.00 0.00 4.45
768 1124 5.968167 TCTACAGTAACCAAATATGACCCCT 59.032 40.000 0.00 0.00 0.00 4.79
769 1125 6.243216 TCTACAGTAACCAAATATGACCCC 57.757 41.667 0.00 0.00 0.00 4.95
770 1126 8.648693 AGTATCTACAGTAACCAAATATGACCC 58.351 37.037 0.00 0.00 0.00 4.46
771 1127 9.694137 GAGTATCTACAGTAACCAAATATGACC 57.306 37.037 0.00 0.00 0.00 4.02
794 1150 5.670792 TTGGTATTTATCGGTGTCAGAGT 57.329 39.130 0.00 0.00 0.00 3.24
799 1155 7.316544 ACTGAATTTGGTATTTATCGGTGTC 57.683 36.000 0.00 0.00 0.00 3.67
803 1159 9.289303 CTGAAAACTGAATTTGGTATTTATCGG 57.711 33.333 0.00 0.00 0.00 4.18
807 1163 9.581289 TCTCCTGAAAACTGAATTTGGTATTTA 57.419 29.630 0.00 0.00 0.00 1.40
808 1164 8.477419 TCTCCTGAAAACTGAATTTGGTATTT 57.523 30.769 0.00 0.00 0.00 1.40
809 1165 8.477419 TTCTCCTGAAAACTGAATTTGGTATT 57.523 30.769 0.00 0.00 0.00 1.89
810 1166 8.655935 ATTCTCCTGAAAACTGAATTTGGTAT 57.344 30.769 0.00 0.00 35.63 2.73
821 2311 6.712276 CACCTAAGGTATTCTCCTGAAAACT 58.288 40.000 0.00 0.00 37.93 2.66
826 2316 3.719871 TGCACCTAAGGTATTCTCCTGA 58.280 45.455 0.00 0.00 37.93 3.86
839 2329 2.582052 CCCTGACAACTTTGCACCTAA 58.418 47.619 0.00 0.00 0.00 2.69
840 2330 1.202879 CCCCTGACAACTTTGCACCTA 60.203 52.381 0.00 0.00 0.00 3.08
841 2331 0.468029 CCCCTGACAACTTTGCACCT 60.468 55.000 0.00 0.00 0.00 4.00
842 2332 0.755327 ACCCCTGACAACTTTGCACC 60.755 55.000 0.00 0.00 0.00 5.01
843 2333 0.668535 GACCCCTGACAACTTTGCAC 59.331 55.000 0.00 0.00 0.00 4.57
844 2334 0.257328 TGACCCCTGACAACTTTGCA 59.743 50.000 0.00 0.00 0.00 4.08
845 2335 1.620822 ATGACCCCTGACAACTTTGC 58.379 50.000 0.00 0.00 0.00 3.68
846 2336 5.336690 CCAAATATGACCCCTGACAACTTTG 60.337 44.000 0.00 0.00 0.00 2.77
847 2337 4.772100 CCAAATATGACCCCTGACAACTTT 59.228 41.667 0.00 0.00 0.00 2.66
848 2338 4.202673 ACCAAATATGACCCCTGACAACTT 60.203 41.667 0.00 0.00 0.00 2.66
849 2339 3.333680 ACCAAATATGACCCCTGACAACT 59.666 43.478 0.00 0.00 0.00 3.16
850 2340 3.697166 ACCAAATATGACCCCTGACAAC 58.303 45.455 0.00 0.00 0.00 3.32
851 2341 4.396357 AACCAAATATGACCCCTGACAA 57.604 40.909 0.00 0.00 0.00 3.18
852 2342 4.538490 AGTAACCAAATATGACCCCTGACA 59.462 41.667 0.00 0.00 0.00 3.58
853 2343 4.881850 CAGTAACCAAATATGACCCCTGAC 59.118 45.833 0.00 0.00 0.00 3.51
854 2344 4.538490 ACAGTAACCAAATATGACCCCTGA 59.462 41.667 0.00 0.00 0.00 3.86
855 2345 4.855340 ACAGTAACCAAATATGACCCCTG 58.145 43.478 0.00 0.00 0.00 4.45
856 2346 5.968167 TCTACAGTAACCAAATATGACCCCT 59.032 40.000 0.00 0.00 0.00 4.79
857 2347 6.243216 TCTACAGTAACCAAATATGACCCC 57.757 41.667 0.00 0.00 0.00 4.95
858 2348 8.648693 AGTATCTACAGTAACCAAATATGACCC 58.351 37.037 0.00 0.00 0.00 4.46
859 2349 9.694137 GAGTATCTACAGTAACCAAATATGACC 57.306 37.037 0.00 0.00 0.00 4.02
879 2369 6.978338 TGGTATTTATCGGTGTCAGAGTATC 58.022 40.000 0.00 0.00 0.00 2.24
880 2370 6.971726 TGGTATTTATCGGTGTCAGAGTAT 57.028 37.500 0.00 0.00 0.00 2.12
881 2371 6.778834 TTGGTATTTATCGGTGTCAGAGTA 57.221 37.500 0.00 0.00 0.00 2.59
882 2372 5.670792 TTGGTATTTATCGGTGTCAGAGT 57.329 39.130 0.00 0.00 0.00 3.24
883 2373 7.279981 TGAATTTGGTATTTATCGGTGTCAGAG 59.720 37.037 0.00 0.00 0.00 3.35
884 2374 7.106890 TGAATTTGGTATTTATCGGTGTCAGA 58.893 34.615 0.00 0.00 0.00 3.27
885 2375 7.065803 ACTGAATTTGGTATTTATCGGTGTCAG 59.934 37.037 0.00 0.00 34.00 3.51
886 2376 6.882140 ACTGAATTTGGTATTTATCGGTGTCA 59.118 34.615 0.00 0.00 0.00 3.58
887 2377 7.316544 ACTGAATTTGGTATTTATCGGTGTC 57.683 36.000 0.00 0.00 0.00 3.67
888 2378 7.696992 AACTGAATTTGGTATTTATCGGTGT 57.303 32.000 0.00 0.00 0.00 4.16
889 2379 8.980143 AAAACTGAATTTGGTATTTATCGGTG 57.020 30.769 0.00 0.00 0.00 4.94
890 2380 8.798402 TGAAAACTGAATTTGGTATTTATCGGT 58.202 29.630 0.00 0.00 0.00 4.69
891 2381 9.289303 CTGAAAACTGAATTTGGTATTTATCGG 57.711 33.333 0.00 0.00 0.00 4.18
892 2382 9.289303 CCTGAAAACTGAATTTGGTATTTATCG 57.711 33.333 0.00 0.00 0.00 2.92
895 2385 9.581289 TCTCCTGAAAACTGAATTTGGTATTTA 57.419 29.630 0.00 0.00 0.00 1.40
896 2386 8.477419 TCTCCTGAAAACTGAATTTGGTATTT 57.523 30.769 0.00 0.00 0.00 1.40
913 2403 4.101114 TGCACCTAAGGTATTCTCCTGAA 58.899 43.478 0.00 0.00 37.93 3.02
914 2404 3.719871 TGCACCTAAGGTATTCTCCTGA 58.280 45.455 0.00 0.00 37.93 3.86
915 2405 4.487714 TTGCACCTAAGGTATTCTCCTG 57.512 45.455 0.00 0.00 37.93 3.86
921 2411 5.381757 TGACAACTTTGCACCTAAGGTATT 58.618 37.500 1.91 0.00 32.11 1.89
924 2414 3.290948 TGACAACTTTGCACCTAAGGT 57.709 42.857 1.91 0.00 35.62 3.50
925 2415 4.647424 TTTGACAACTTTGCACCTAAGG 57.353 40.909 1.91 0.00 0.00 2.69
927 2417 5.452636 GGGATTTTGACAACTTTGCACCTAA 60.453 40.000 0.00 0.00 0.00 2.69
930 2420 3.130633 GGGATTTTGACAACTTTGCACC 58.869 45.455 0.00 0.00 0.00 5.01
932 2422 3.037549 AGGGGATTTTGACAACTTTGCA 58.962 40.909 0.00 0.00 0.00 4.08
977 2467 3.826157 GGTGTTGAGGTTTGATTCCATCA 59.174 43.478 0.00 0.00 37.55 3.07
1227 2720 7.066307 AGAAGAAGAAGAAGAAGAAGAAGCT 57.934 36.000 0.00 0.00 0.00 3.74
1228 2721 7.657354 AGAAGAAGAAGAAGAAGAAGAAGAAGC 59.343 37.037 0.00 0.00 0.00 3.86
1229 2722 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1230 2723 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1231 2724 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1232 2725 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1233 2726 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1234 2727 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1235 2728 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1236 2729 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1237 2730 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1238 2731 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1239 2732 9.323985 CAAGAAGAAGAAGAAGAAGAAGAAGAA 57.676 33.333 0.00 0.00 0.00 2.52
1240 2733 7.930865 CCAAGAAGAAGAAGAAGAAGAAGAAGA 59.069 37.037 0.00 0.00 0.00 2.87
1241 2734 7.714813 ACCAAGAAGAAGAAGAAGAAGAAGAAG 59.285 37.037 0.00 0.00 0.00 2.85
1242 2735 7.569240 ACCAAGAAGAAGAAGAAGAAGAAGAA 58.431 34.615 0.00 0.00 0.00 2.52
1243 2736 7.130681 ACCAAGAAGAAGAAGAAGAAGAAGA 57.869 36.000 0.00 0.00 0.00 2.87
1244 2737 7.800155 AACCAAGAAGAAGAAGAAGAAGAAG 57.200 36.000 0.00 0.00 0.00 2.85
1245 2738 9.495572 GATAACCAAGAAGAAGAAGAAGAAGAA 57.504 33.333 0.00 0.00 0.00 2.52
1265 2758 3.959449 ACTAAGGGAAGGAGACGATAACC 59.041 47.826 0.00 0.00 0.00 2.85
1295 2812 4.074970 AGAGATCATGAAACCGCAAAACT 58.925 39.130 0.00 0.00 0.00 2.66
1322 2839 7.571428 GCGCGTATCTATCTAGCATGTATGATA 60.571 40.741 8.43 0.00 0.00 2.15
1324 2841 5.504173 GCGCGTATCTATCTAGCATGTATGA 60.504 44.000 8.43 0.00 0.00 2.15
1343 2860 2.279918 AACCGAGAAACAGCGCGT 60.280 55.556 8.43 0.00 0.00 6.01
1537 3055 1.933853 ACAGCGTCGCAATTCTATTCC 59.066 47.619 21.09 0.00 0.00 3.01
1538 3056 3.658351 AACAGCGTCGCAATTCTATTC 57.342 42.857 21.09 0.00 0.00 1.75
1539 3057 4.154195 AGAAAACAGCGTCGCAATTCTATT 59.846 37.500 21.09 4.47 0.00 1.73
1735 3268 2.220824 CACGATTTGCACGAGACAGAAA 59.779 45.455 1.86 0.00 34.70 2.52
1821 3356 1.071471 GTCCCTCCACACCACACTG 59.929 63.158 0.00 0.00 0.00 3.66
1841 3377 0.490017 TCCTACACCTCAACCCCAGA 59.510 55.000 0.00 0.00 0.00 3.86
2020 3556 1.066215 TGCATACCACTGCTGTTCGAT 60.066 47.619 0.00 0.00 42.75 3.59
2133 3674 6.014647 ACATTAGTGAACAGAGGTAGTACCA 58.985 40.000 21.49 0.00 41.95 3.25
2146 3687 5.667156 GCGAAAACGTCCTACATTAGTGAAC 60.667 44.000 0.00 0.00 0.00 3.18
2194 3735 5.091552 ACCCTCTGTTCACTAATGTAGGAA 58.908 41.667 0.00 0.00 0.00 3.36
2253 3794 7.203255 ACTATTTGCAGTTAACTTTGAGTCC 57.797 36.000 5.07 0.00 0.00 3.85
2279 3821 6.092259 GGAGTAATATATACAGCAAAAGGCCG 59.908 42.308 0.00 0.00 46.50 6.13
2300 3842 8.787818 TCTTTTATATTTTGGTATGGAGGGAGT 58.212 33.333 0.00 0.00 0.00 3.85
2301 3843 9.813826 ATCTTTTATATTTTGGTATGGAGGGAG 57.186 33.333 0.00 0.00 0.00 4.30
2302 3844 9.586732 CATCTTTTATATTTTGGTATGGAGGGA 57.413 33.333 0.00 0.00 0.00 4.20
2303 3845 9.367160 ACATCTTTTATATTTTGGTATGGAGGG 57.633 33.333 0.00 0.00 0.00 4.30
2323 3865 9.838339 CCTCTGTACCAAAATATAAGACATCTT 57.162 33.333 0.00 0.00 39.85 2.40
2324 3866 8.993424 ACCTCTGTACCAAAATATAAGACATCT 58.007 33.333 0.00 0.00 0.00 2.90
2327 3869 9.263446 ACTACCTCTGTACCAAAATATAAGACA 57.737 33.333 0.00 0.00 0.00 3.41
2334 3876 9.375974 AGCATATACTACCTCTGTACCAAAATA 57.624 33.333 0.00 0.00 0.00 1.40
2335 3877 8.263854 AGCATATACTACCTCTGTACCAAAAT 57.736 34.615 0.00 0.00 0.00 1.82
2336 3878 7.670605 AGCATATACTACCTCTGTACCAAAA 57.329 36.000 0.00 0.00 0.00 2.44
2337 3879 7.670605 AAGCATATACTACCTCTGTACCAAA 57.329 36.000 0.00 0.00 0.00 3.28
2338 3880 8.636213 GTTAAGCATATACTACCTCTGTACCAA 58.364 37.037 0.00 0.00 0.00 3.67
2339 3881 7.781219 TGTTAAGCATATACTACCTCTGTACCA 59.219 37.037 0.00 0.00 0.00 3.25
2340 3882 8.174733 TGTTAAGCATATACTACCTCTGTACC 57.825 38.462 0.00 0.00 0.00 3.34
2341 3883 9.627395 CATGTTAAGCATATACTACCTCTGTAC 57.373 37.037 0.00 0.00 35.74 2.90
2342 3884 8.304596 GCATGTTAAGCATATACTACCTCTGTA 58.695 37.037 0.00 0.00 35.74 2.74
2343 3885 7.015682 AGCATGTTAAGCATATACTACCTCTGT 59.984 37.037 0.00 0.00 35.74 3.41
2344 3886 7.382110 AGCATGTTAAGCATATACTACCTCTG 58.618 38.462 0.00 0.00 35.74 3.35
2345 3887 7.546250 AGCATGTTAAGCATATACTACCTCT 57.454 36.000 0.00 0.00 35.74 3.69
2346 3888 9.706691 TTTAGCATGTTAAGCATATACTACCTC 57.293 33.333 2.13 0.00 35.74 3.85
2350 3892 9.839817 TGGTTTTAGCATGTTAAGCATATACTA 57.160 29.630 2.13 0.00 35.74 1.82
2351 3893 8.746052 TGGTTTTAGCATGTTAAGCATATACT 57.254 30.769 2.13 0.00 35.74 2.12
2410 3952 3.619483 TGGCACGCATAATACACTAACAC 59.381 43.478 0.00 0.00 0.00 3.32
2417 3959 2.290367 GCAATCTGGCACGCATAATACA 59.710 45.455 0.00 0.00 0.00 2.29
2422 3964 0.107752 TGAGCAATCTGGCACGCATA 60.108 50.000 0.00 0.00 35.83 3.14
2464 4006 4.051922 GAGGTTGCATATAGTCGTGGAAG 58.948 47.826 0.00 0.00 0.00 3.46
2493 4035 7.093289 TGGAAGAAGGATTTAGGAACTAGACTG 60.093 40.741 0.00 0.00 44.25 3.51
2590 4132 3.104843 AGAGGCAGCGATAAGTTGATC 57.895 47.619 0.00 0.00 32.33 2.92
2611 4153 5.249163 CCAGATGTATGATGGGATTACTCCA 59.751 44.000 1.05 0.00 44.08 3.86
2688 4230 5.972107 AAATTGTTACATCTCAGCTGCTT 57.028 34.783 9.47 0.00 0.00 3.91
2834 4376 7.732025 TCTGTTGTGTAGTAGAGGATGAAAAA 58.268 34.615 0.00 0.00 0.00 1.94
2960 4504 6.004574 AGAAAGGCCTCCTAAAGTACAAAAG 58.995 40.000 5.23 0.00 31.13 2.27
3006 4550 8.210946 TCCTGAGAATCTTTCTTTGAAACAGTA 58.789 33.333 0.00 0.00 40.87 2.74
3052 4596 3.402681 CGGGCCCACTGATCCAGT 61.403 66.667 24.92 0.00 46.51 4.00
3195 4739 0.402121 GGTGCCCAACTTTCTCCTCT 59.598 55.000 0.00 0.00 0.00 3.69
3285 4829 6.593770 TGTAATCATGGTCTGTAATGTCACAC 59.406 38.462 0.00 0.00 0.00 3.82
3291 4835 6.017605 GGCTTCTGTAATCATGGTCTGTAATG 60.018 42.308 0.00 0.00 0.00 1.90
3456 5000 4.467438 TCATAAGAGTGATGCCTGTCAGAA 59.533 41.667 0.00 0.00 0.00 3.02
3483 5027 3.731652 TGTGACCTTGGAAATTTGCTG 57.268 42.857 11.22 4.10 0.00 4.41
3636 5180 4.740741 TTTCGAGCGATTTGTTTCATCA 57.259 36.364 0.00 0.00 0.00 3.07
3709 5253 7.182026 TCCTGAACCATTCTCCAAGTCTAATAA 59.818 37.037 0.00 0.00 0.00 1.40
3710 5254 6.672218 TCCTGAACCATTCTCCAAGTCTAATA 59.328 38.462 0.00 0.00 0.00 0.98
3724 5268 0.250513 GAGCGACCTCCTGAACCATT 59.749 55.000 0.00 0.00 31.68 3.16
3789 5333 2.879103 TCCCATCCCTCACAAACTTC 57.121 50.000 0.00 0.00 0.00 3.01
3811 5355 4.040952 GCCATCCCAGTAGTCATGACTTAT 59.959 45.833 32.14 18.57 42.54 1.73
3855 5399 0.401356 TGGCAACTGGATGAGCTGAA 59.599 50.000 0.00 0.00 37.61 3.02
3874 5418 1.550869 CCCTGAATCCCCAAAGCAAGT 60.551 52.381 0.00 0.00 0.00 3.16
3881 5425 3.307506 CAATAATGCCCTGAATCCCCAA 58.692 45.455 0.00 0.00 0.00 4.12
3884 5428 3.299503 ACACAATAATGCCCTGAATCCC 58.700 45.455 0.00 0.00 0.00 3.85
4010 5554 5.236695 TCACTAATATCCTTCGAGTCAGACG 59.763 44.000 0.00 0.00 0.00 4.18
4058 5602 6.592607 GTCAAAATGCTGATCACCATTCATTT 59.407 34.615 15.05 11.12 38.40 2.32
4090 5634 5.869579 AGCTCTTGGACTAAGTTCATTTGA 58.130 37.500 0.00 0.00 37.65 2.69
4493 6037 6.069440 ACCCCAGATGTTAGAGAAATTGATGA 60.069 38.462 0.00 0.00 0.00 2.92
4535 6079 3.750828 GGAGAGCTCCTGCAGTTAC 57.249 57.895 13.81 0.64 46.16 2.50
4552 6096 2.185004 ACATGTGAAGACCTTTCGGG 57.815 50.000 0.00 0.00 41.89 5.14
4585 6129 9.606631 AGGCCTTCAATAATCGAGATATTATTC 57.393 33.333 0.00 0.00 39.09 1.75
4683 6227 7.404671 AGGAGAAAGTAAAAGCTGTTGAAAA 57.595 32.000 0.00 0.00 0.00 2.29
4723 6267 3.550437 AGCGCTCAGTTCTCCATAAAT 57.450 42.857 2.64 0.00 0.00 1.40
4795 6339 8.936864 CAGCCTACATATTAACTAGTAATTGGC 58.063 37.037 0.00 0.00 34.18 4.52
4800 6344 8.857098 CAGGACAGCCTACATATTAACTAGTAA 58.143 37.037 0.00 0.00 44.80 2.24
5007 6566 5.055642 TCAATGAGAAGCAAGCAAATCTG 57.944 39.130 0.00 0.00 0.00 2.90
5172 6731 2.806945 CAAGGCCCTTGGATGTAGAA 57.193 50.000 16.07 0.00 37.77 2.10
5295 6854 0.316204 CAGCAAGGTTTGGCAAGAGG 59.684 55.000 0.00 0.00 0.00 3.69
5479 7038 0.827507 TTCACCAAAGGGCCTGAAGC 60.828 55.000 6.92 0.00 42.60 3.86
5601 7160 2.349590 CTTGGATGATGTCACTGCGAA 58.650 47.619 0.00 0.00 0.00 4.70
5647 7206 3.030291 ACTTGCAACATCCTTGTCCAAA 58.970 40.909 0.00 0.00 34.06 3.28
5651 7210 4.051237 GGAAAACTTGCAACATCCTTGTC 58.949 43.478 0.00 0.00 34.06 3.18
5850 7416 4.143030 CGCTAGACAAAAACATCTGACTGG 60.143 45.833 0.00 0.00 0.00 4.00
5856 7422 5.751243 AAACACGCTAGACAAAAACATCT 57.249 34.783 0.00 0.00 0.00 2.90
6084 8440 1.625818 ACTGAGCAACCTTCTTCGGAT 59.374 47.619 0.00 0.00 0.00 4.18
6098 8454 8.290325 ACACAAACTAATTAGCTTAAACTGAGC 58.710 33.333 12.54 0.00 40.43 4.26
6133 8489 5.818678 TTCAATCGTGTAGCCCCTTATAT 57.181 39.130 0.00 0.00 0.00 0.86
6136 8492 3.985019 TTTCAATCGTGTAGCCCCTTA 57.015 42.857 0.00 0.00 0.00 2.69
6190 8562 2.194201 TCCGGGGACAAAATCACTTC 57.806 50.000 0.00 0.00 0.00 3.01
6271 8643 3.845781 AATAGCACACATACCCTCCTG 57.154 47.619 0.00 0.00 0.00 3.86
6280 8652 4.568072 TGTCCACCTTAATAGCACACAT 57.432 40.909 0.00 0.00 0.00 3.21
6342 8714 6.861055 TGAAAACCGAGCTTCAACATAATTTC 59.139 34.615 0.00 0.00 0.00 2.17
6353 8725 5.358298 AACTTGTATGAAAACCGAGCTTC 57.642 39.130 0.00 0.00 0.00 3.86
6393 8765 6.037500 TCACACTCTAAAGTTGATATGCATGC 59.962 38.462 11.82 11.82 31.71 4.06
6432 8805 5.220381 GCTTAAAACTTTCCCTTTCTTCCG 58.780 41.667 0.00 0.00 0.00 4.30
6443 8816 4.939439 TCCCCTCGTATGCTTAAAACTTTC 59.061 41.667 0.00 0.00 0.00 2.62
6512 8885 8.715191 TTTGAATTTCACTATTGCAACAAACT 57.285 26.923 0.00 0.00 0.00 2.66
6539 8912 9.399797 TGTCTCGACTATCCAGTATAAGTTTAA 57.600 33.333 0.00 0.00 34.21 1.52
6540 8913 8.969260 TGTCTCGACTATCCAGTATAAGTTTA 57.031 34.615 0.00 0.00 34.21 2.01
6541 8914 7.876936 TGTCTCGACTATCCAGTATAAGTTT 57.123 36.000 0.00 0.00 34.21 2.66
6542 8915 8.466617 AATGTCTCGACTATCCAGTATAAGTT 57.533 34.615 0.00 0.00 34.21 2.66
6543 8916 9.570468 TTAATGTCTCGACTATCCAGTATAAGT 57.430 33.333 0.00 0.00 34.21 2.24
6596 8969 5.456548 AATGATGATGCAAGTGTTTGACA 57.543 34.783 0.00 0.00 36.36 3.58
6637 9012 6.755141 TGACCGCTAGCAATAAGTTAGTAAAG 59.245 38.462 16.45 0.00 33.92 1.85
6657 9032 5.584649 ACCAATAATGTCAACATAGTGACCG 59.415 40.000 3.06 0.00 46.13 4.79
6664 9039 5.492895 ACGGTCACCAATAATGTCAACATA 58.507 37.500 0.00 0.00 35.10 2.29
6673 9048 4.014406 GAGGGAAAACGGTCACCAATAAT 58.986 43.478 0.00 0.00 0.00 1.28
6705 9080 5.827756 TCTCCAAGGAGTGTCTAGAACATA 58.172 41.667 15.36 0.00 40.80 2.29
6711 9086 3.829601 ACACTTCTCCAAGGAGTGTCTAG 59.170 47.826 14.03 8.92 42.49 2.43
6713 9088 2.630580 GACACTTCTCCAAGGAGTGTCT 59.369 50.000 29.14 9.08 40.03 3.41
6715 9090 2.366916 CAGACACTTCTCCAAGGAGTGT 59.633 50.000 18.66 18.66 42.49 3.55
6718 9093 2.353605 GCTCAGACACTTCTCCAAGGAG 60.354 54.545 9.90 9.90 43.21 3.69
6725 9100 3.063485 GTGGAAAGCTCAGACACTTCTC 58.937 50.000 0.00 0.00 0.00 2.87
6792 9167 5.411781 CCAACATGAGTCAAGACTACTACC 58.588 45.833 0.00 0.00 42.66 3.18
6796 9171 3.003480 GCCCAACATGAGTCAAGACTAC 58.997 50.000 0.00 0.00 42.66 2.73
6797 9172 2.637382 TGCCCAACATGAGTCAAGACTA 59.363 45.455 0.00 0.00 42.66 2.59
6798 9173 1.421268 TGCCCAACATGAGTCAAGACT 59.579 47.619 0.00 1.68 45.84 3.24
6799 9174 1.896220 TGCCCAACATGAGTCAAGAC 58.104 50.000 0.00 0.00 0.00 3.01
6800 9175 2.885135 ATGCCCAACATGAGTCAAGA 57.115 45.000 0.00 0.00 37.70 3.02
6801 9176 5.163513 GTTTTATGCCCAACATGAGTCAAG 58.836 41.667 0.00 0.00 40.06 3.02
6802 9177 4.021544 GGTTTTATGCCCAACATGAGTCAA 60.022 41.667 0.00 0.00 40.06 3.18
6803 9178 3.509575 GGTTTTATGCCCAACATGAGTCA 59.490 43.478 0.00 0.00 40.06 3.41
6804 9179 3.119137 GGGTTTTATGCCCAACATGAGTC 60.119 47.826 0.00 0.00 45.40 3.36
6805 9180 2.831526 GGGTTTTATGCCCAACATGAGT 59.168 45.455 0.00 0.00 45.40 3.41
6806 9181 2.159254 CGGGTTTTATGCCCAACATGAG 60.159 50.000 0.00 0.00 46.40 2.90
6807 9182 1.821753 CGGGTTTTATGCCCAACATGA 59.178 47.619 0.00 0.00 46.40 3.07
6808 9183 1.821753 TCGGGTTTTATGCCCAACATG 59.178 47.619 1.07 0.00 46.40 3.21
6809 9184 2.223803 TCGGGTTTTATGCCCAACAT 57.776 45.000 1.07 0.00 46.40 2.71
6810 9185 1.996798 TTCGGGTTTTATGCCCAACA 58.003 45.000 1.07 0.00 46.40 3.33
6811 9186 2.159156 GGATTCGGGTTTTATGCCCAAC 60.159 50.000 1.07 0.00 46.40 3.77
6812 9187 2.104170 GGATTCGGGTTTTATGCCCAA 58.896 47.619 1.07 0.00 46.40 4.12
6813 9188 1.686741 GGGATTCGGGTTTTATGCCCA 60.687 52.381 0.00 0.00 46.40 5.36
6814 9189 1.037493 GGGATTCGGGTTTTATGCCC 58.963 55.000 0.00 0.00 42.68 5.36
6815 9190 0.666374 CGGGATTCGGGTTTTATGCC 59.334 55.000 0.00 0.00 34.75 4.40
6816 9191 1.670791 TCGGGATTCGGGTTTTATGC 58.329 50.000 0.00 0.00 39.77 3.14
6817 9192 3.252458 GGATTCGGGATTCGGGTTTTATG 59.748 47.826 0.00 0.00 39.77 1.90
6818 9193 3.483421 GGATTCGGGATTCGGGTTTTAT 58.517 45.455 0.00 0.00 39.77 1.40
6819 9194 2.421811 GGGATTCGGGATTCGGGTTTTA 60.422 50.000 0.00 0.00 39.77 1.52
6820 9195 1.683938 GGGATTCGGGATTCGGGTTTT 60.684 52.381 0.00 0.00 39.77 2.43
6821 9196 0.106868 GGGATTCGGGATTCGGGTTT 60.107 55.000 0.00 0.00 39.77 3.27
6822 9197 1.530283 GGGATTCGGGATTCGGGTT 59.470 57.895 0.00 0.00 39.77 4.11
6823 9198 2.803817 CGGGATTCGGGATTCGGGT 61.804 63.158 0.00 0.00 39.77 5.28
6824 9199 2.030562 CGGGATTCGGGATTCGGG 59.969 66.667 0.00 0.00 39.77 5.14
6825 9200 0.878961 GTTCGGGATTCGGGATTCGG 60.879 60.000 0.00 0.00 39.77 4.30
6826 9201 0.878961 GGTTCGGGATTCGGGATTCG 60.879 60.000 0.00 0.00 39.77 3.34
6827 9202 0.468648 AGGTTCGGGATTCGGGATTC 59.531 55.000 0.00 0.00 39.77 2.52
6828 9203 0.180406 CAGGTTCGGGATTCGGGATT 59.820 55.000 0.00 0.00 39.77 3.01
6829 9204 0.689745 TCAGGTTCGGGATTCGGGAT 60.690 55.000 0.00 0.00 39.77 3.85
6830 9205 0.905809 TTCAGGTTCGGGATTCGGGA 60.906 55.000 0.00 0.00 39.77 5.14
6831 9206 0.035820 TTTCAGGTTCGGGATTCGGG 60.036 55.000 0.00 0.00 39.77 5.14
6832 9207 1.467342 GTTTTCAGGTTCGGGATTCGG 59.533 52.381 0.00 0.00 39.77 4.30
6833 9208 1.467342 GGTTTTCAGGTTCGGGATTCG 59.533 52.381 0.00 0.00 40.90 3.34
6834 9209 1.816835 GGGTTTTCAGGTTCGGGATTC 59.183 52.381 0.00 0.00 0.00 2.52
6835 9210 1.549265 GGGGTTTTCAGGTTCGGGATT 60.549 52.381 0.00 0.00 0.00 3.01
6836 9211 0.039180 GGGGTTTTCAGGTTCGGGAT 59.961 55.000 0.00 0.00 0.00 3.85
6837 9212 1.457165 GGGGTTTTCAGGTTCGGGA 59.543 57.895 0.00 0.00 0.00 5.14
6838 9213 1.969589 CGGGGTTTTCAGGTTCGGG 60.970 63.158 0.00 0.00 0.00 5.14
6839 9214 0.535553 TTCGGGGTTTTCAGGTTCGG 60.536 55.000 0.00 0.00 0.00 4.30
6840 9215 1.530323 ATTCGGGGTTTTCAGGTTCG 58.470 50.000 0.00 0.00 0.00 3.95
6841 9216 3.192001 GGTTATTCGGGGTTTTCAGGTTC 59.808 47.826 0.00 0.00 0.00 3.62
6842 9217 3.159472 GGTTATTCGGGGTTTTCAGGTT 58.841 45.455 0.00 0.00 0.00 3.50
6843 9218 2.377531 AGGTTATTCGGGGTTTTCAGGT 59.622 45.455 0.00 0.00 0.00 4.00
6844 9219 2.752903 CAGGTTATTCGGGGTTTTCAGG 59.247 50.000 0.00 0.00 0.00 3.86
6845 9220 3.681593 TCAGGTTATTCGGGGTTTTCAG 58.318 45.455 0.00 0.00 0.00 3.02
6846 9221 3.791953 TCAGGTTATTCGGGGTTTTCA 57.208 42.857 0.00 0.00 0.00 2.69
6847 9222 3.822167 TGTTCAGGTTATTCGGGGTTTTC 59.178 43.478 0.00 0.00 0.00 2.29
6848 9223 3.570975 GTGTTCAGGTTATTCGGGGTTTT 59.429 43.478 0.00 0.00 0.00 2.43
6849 9224 3.151554 GTGTTCAGGTTATTCGGGGTTT 58.848 45.455 0.00 0.00 0.00 3.27
6850 9225 2.374170 AGTGTTCAGGTTATTCGGGGTT 59.626 45.455 0.00 0.00 0.00 4.11
6851 9226 1.982958 AGTGTTCAGGTTATTCGGGGT 59.017 47.619 0.00 0.00 0.00 4.95
6852 9227 2.781681 AGTGTTCAGGTTATTCGGGG 57.218 50.000 0.00 0.00 0.00 5.73
6853 9228 5.862323 CGATATAGTGTTCAGGTTATTCGGG 59.138 44.000 0.00 0.00 0.00 5.14
6854 9229 5.862323 CCGATATAGTGTTCAGGTTATTCGG 59.138 44.000 0.00 0.00 0.00 4.30
6855 9230 5.862323 CCCGATATAGTGTTCAGGTTATTCG 59.138 44.000 0.00 0.00 0.00 3.34
6856 9231 6.756221 ACCCGATATAGTGTTCAGGTTATTC 58.244 40.000 0.00 0.00 0.00 1.75
6857 9232 6.742559 ACCCGATATAGTGTTCAGGTTATT 57.257 37.500 0.00 0.00 0.00 1.40
6858 9233 6.071503 GCTACCCGATATAGTGTTCAGGTTAT 60.072 42.308 0.00 0.00 0.00 1.89
6859 9234 5.242393 GCTACCCGATATAGTGTTCAGGTTA 59.758 44.000 0.00 0.00 0.00 2.85
6860 9235 4.038883 GCTACCCGATATAGTGTTCAGGTT 59.961 45.833 0.00 0.00 0.00 3.50
6861 9236 3.573110 GCTACCCGATATAGTGTTCAGGT 59.427 47.826 0.00 0.00 0.00 4.00
6862 9237 3.572682 TGCTACCCGATATAGTGTTCAGG 59.427 47.826 0.00 0.00 0.00 3.86
6863 9238 4.519350 TCTGCTACCCGATATAGTGTTCAG 59.481 45.833 0.00 0.00 0.00 3.02
6864 9239 4.466827 TCTGCTACCCGATATAGTGTTCA 58.533 43.478 0.00 0.00 0.00 3.18
6865 9240 5.416326 AGATCTGCTACCCGATATAGTGTTC 59.584 44.000 0.00 0.00 0.00 3.18
6866 9241 5.184096 CAGATCTGCTACCCGATATAGTGTT 59.816 44.000 10.38 0.00 0.00 3.32
6867 9242 4.702612 CAGATCTGCTACCCGATATAGTGT 59.297 45.833 10.38 0.00 0.00 3.55
6868 9243 4.944317 TCAGATCTGCTACCCGATATAGTG 59.056 45.833 18.36 0.00 0.00 2.74
6869 9244 5.180810 TCAGATCTGCTACCCGATATAGT 57.819 43.478 18.36 0.00 0.00 2.12
6870 9245 6.516739 TTTCAGATCTGCTACCCGATATAG 57.483 41.667 18.36 0.00 0.00 1.31
6871 9246 6.295123 GGTTTTCAGATCTGCTACCCGATATA 60.295 42.308 18.36 0.00 0.00 0.86
6872 9247 5.511545 GGTTTTCAGATCTGCTACCCGATAT 60.512 44.000 18.36 0.00 0.00 1.63
6873 9248 4.202223 GGTTTTCAGATCTGCTACCCGATA 60.202 45.833 18.36 0.00 0.00 2.92
6874 9249 3.432326 GGTTTTCAGATCTGCTACCCGAT 60.432 47.826 18.36 0.00 0.00 4.18
6875 9250 2.093658 GGTTTTCAGATCTGCTACCCGA 60.094 50.000 18.36 0.00 0.00 5.14
6876 9251 2.280628 GGTTTTCAGATCTGCTACCCG 58.719 52.381 18.36 0.00 0.00 5.28
6877 9252 2.644676 GGGTTTTCAGATCTGCTACCC 58.355 52.381 28.62 28.62 37.70 3.69
6878 9253 2.093658 TCGGGTTTTCAGATCTGCTACC 60.094 50.000 18.36 20.91 0.00 3.18
6879 9254 3.247006 TCGGGTTTTCAGATCTGCTAC 57.753 47.619 18.36 14.02 0.00 3.58
6880 9255 3.973206 TTCGGGTTTTCAGATCTGCTA 57.027 42.857 18.36 5.57 0.00 3.49
6881 9256 2.859165 TTCGGGTTTTCAGATCTGCT 57.141 45.000 18.36 0.00 0.00 4.24
6882 9257 4.440839 AAATTCGGGTTTTCAGATCTGC 57.559 40.909 18.36 3.66 0.00 4.26
6883 9258 9.669353 CATATTAAATTCGGGTTTTCAGATCTG 57.331 33.333 17.07 17.07 0.00 2.90
6884 9259 8.850156 CCATATTAAATTCGGGTTTTCAGATCT 58.150 33.333 0.00 0.00 0.00 2.75
6885 9260 8.082242 CCCATATTAAATTCGGGTTTTCAGATC 58.918 37.037 0.00 0.00 31.80 2.75
6886 9261 7.951591 CCCATATTAAATTCGGGTTTTCAGAT 58.048 34.615 0.00 0.00 31.80 2.90
6887 9262 7.341445 CCCATATTAAATTCGGGTTTTCAGA 57.659 36.000 0.00 0.00 31.80 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.