Multiple sequence alignment - TraesCS2A01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G258800 chr2A 100.000 3038 0 0 1 3038 406769343 406766306 0.000000e+00 5611
1 TraesCS2A01G258800 chr2D 94.013 2639 88 23 1 2625 323647074 323649656 0.000000e+00 3934
2 TraesCS2A01G258800 chr2B 91.928 1945 75 38 712 2604 391769172 391771086 0.000000e+00 2647
3 TraesCS2A01G258800 chr2B 96.423 671 22 1 1 669 391768415 391769085 0.000000e+00 1105
4 TraesCS2A01G258800 chr2B 90.840 131 12 0 2625 2755 90047867 90047737 3.110000e-40 176
5 TraesCS2A01G258800 chr3A 91.852 135 10 1 2626 2760 210156885 210156752 1.440000e-43 187
6 TraesCS2A01G258800 chr5D 91.111 135 11 1 2625 2758 106454595 106454729 6.690000e-42 182
7 TraesCS2A01G258800 chr6A 91.538 130 11 0 2627 2756 106974016 106974145 2.410000e-41 180
8 TraesCS2A01G258800 chr7A 90.769 130 12 0 2626 2755 732956113 732956242 1.120000e-39 174
9 TraesCS2A01G258800 chr3D 89.706 136 14 0 2622 2757 32145583 32145448 1.120000e-39 174
10 TraesCS2A01G258800 chr6B 89.209 139 13 2 2618 2755 211702832 211702969 4.030000e-39 172
11 TraesCS2A01G258800 chr4A 89.781 137 11 3 2623 2757 571592504 571592369 4.030000e-39 172
12 TraesCS2A01G258800 chr1D 86.275 153 17 4 2627 2776 462930049 462930200 2.420000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G258800 chr2A 406766306 406769343 3037 True 5611 5611 100.0000 1 3038 1 chr2A.!!$R1 3037
1 TraesCS2A01G258800 chr2D 323647074 323649656 2582 False 3934 3934 94.0130 1 2625 1 chr2D.!!$F1 2624
2 TraesCS2A01G258800 chr2B 391768415 391771086 2671 False 1876 2647 94.1755 1 2604 2 chr2B.!!$F1 2603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.103755 TGCCTTCAGCTCTCTATGCG 59.896 55.0 0.0 0.0 44.23 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2255 0.035458 CTCCTTGTCGCCCTTGTCTT 59.965 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
281 282 0.103755 TGCCTTCAGCTCTCTATGCG 59.896 55.000 0.00 0.00 44.23 4.73
379 380 7.651027 ATGGATGGAGGAAACATAGAAAAAG 57.349 36.000 0.00 0.00 0.00 2.27
412 413 8.583296 TCATCAGATAGATTGTATTCTGAGTGG 58.417 37.037 7.45 1.27 37.59 4.00
416 417 8.583296 CAGATAGATTGTATTCTGAGTGGATGA 58.417 37.037 0.00 0.00 0.00 2.92
548 549 6.409524 TTTTCTGTAGAAGGAACCGAGTTA 57.590 37.500 0.00 0.00 35.21 2.24
592 593 4.265073 GTTACTCTGGTGCCATTGATTCT 58.735 43.478 0.00 0.00 0.00 2.40
669 672 6.715280 TCTCATTGCCTGGAGAATATAATCC 58.285 40.000 0.00 0.10 37.23 3.01
679 695 7.320384 TGGAGAATATAATCCTCATTCAGCA 57.680 36.000 7.46 0.00 36.50 4.41
746 794 3.120616 CACAAAGCAGCAACGATTCATTG 59.879 43.478 0.00 0.00 0.00 2.82
830 878 5.840267 CGAAAATTCCAAAGTTTGCAAATCG 59.160 36.000 16.21 11.59 0.00 3.34
845 893 3.378427 GCAAATCGGTAGCTTCTCCAATT 59.622 43.478 0.00 0.00 0.00 2.32
901 949 0.603975 GCTTTGCTCACGGAAGGAGT 60.604 55.000 0.00 0.00 34.83 3.85
941 990 3.794028 GCTATATAAAGGCTCGATCTGCG 59.206 47.826 0.00 0.00 42.69 5.18
986 1064 2.032620 CGAGGCCAAGGTAGATACAGT 58.967 52.381 5.01 0.00 0.00 3.55
987 1065 2.223829 CGAGGCCAAGGTAGATACAGTG 60.224 54.545 5.01 0.00 0.00 3.66
1284 1362 1.396301 GCCAAGAGCAAGAAGATGACG 59.604 52.381 0.00 0.00 42.97 4.35
1426 1507 0.398239 TCAGGATGCAGGAGAGGAGG 60.398 60.000 0.00 0.00 34.76 4.30
1536 1617 4.148825 CTCGTCGGCAAGGAGGGG 62.149 72.222 0.00 0.00 36.45 4.79
1668 1758 2.685380 CCTCTCCGGCTCTGGGTT 60.685 66.667 0.00 0.00 0.00 4.11
1779 1869 3.103911 GTCGACAAGGCCGACGTG 61.104 66.667 11.55 0.00 45.23 4.49
1810 1900 2.927580 GCCACCGACGAGGACAAGA 61.928 63.158 10.03 0.00 45.00 3.02
1811 1901 1.890894 CCACCGACGAGGACAAGAT 59.109 57.895 8.56 0.00 45.00 2.40
1997 2088 3.130160 CAAGGCAGGAAGAGCGCC 61.130 66.667 2.29 0.00 46.62 6.53
2137 2237 1.528129 GAGGCCAAAGACAAGGACAG 58.472 55.000 5.01 0.00 34.45 3.51
2138 2238 0.111253 AGGCCAAAGACAAGGACAGG 59.889 55.000 5.01 0.00 34.45 4.00
2139 2239 0.110486 GGCCAAAGACAAGGACAGGA 59.890 55.000 0.00 0.00 31.39 3.86
2140 2240 1.478654 GGCCAAAGACAAGGACAGGAA 60.479 52.381 0.00 0.00 31.39 3.36
2141 2241 1.882623 GCCAAAGACAAGGACAGGAAG 59.117 52.381 0.00 0.00 0.00 3.46
2142 2242 2.508526 CCAAAGACAAGGACAGGAAGG 58.491 52.381 0.00 0.00 0.00 3.46
2143 2243 2.106511 CCAAAGACAAGGACAGGAAGGA 59.893 50.000 0.00 0.00 0.00 3.36
2144 2244 3.142174 CAAAGACAAGGACAGGAAGGAC 58.858 50.000 0.00 0.00 0.00 3.85
2145 2245 2.103153 AGACAAGGACAGGAAGGACA 57.897 50.000 0.00 0.00 0.00 4.02
2146 2246 2.408565 AGACAAGGACAGGAAGGACAA 58.591 47.619 0.00 0.00 0.00 3.18
2147 2247 2.370189 AGACAAGGACAGGAAGGACAAG 59.630 50.000 0.00 0.00 0.00 3.16
2148 2248 1.421646 ACAAGGACAGGAAGGACAAGG 59.578 52.381 0.00 0.00 0.00 3.61
2149 2249 1.068121 AAGGACAGGAAGGACAAGGG 58.932 55.000 0.00 0.00 0.00 3.95
2150 2250 1.002011 GGACAGGAAGGACAAGGGC 60.002 63.158 0.00 0.00 0.00 5.19
2151 2251 1.376037 GACAGGAAGGACAAGGGCG 60.376 63.158 0.00 0.00 0.00 6.13
2152 2252 1.827399 GACAGGAAGGACAAGGGCGA 61.827 60.000 0.00 0.00 0.00 5.54
2153 2253 1.376037 CAGGAAGGACAAGGGCGAC 60.376 63.158 0.00 0.00 0.00 5.19
2154 2254 1.841556 AGGAAGGACAAGGGCGACA 60.842 57.895 0.00 0.00 0.00 4.35
2155 2255 1.072505 GGAAGGACAAGGGCGACAA 59.927 57.895 0.00 0.00 0.00 3.18
2156 2256 0.536460 GGAAGGACAAGGGCGACAAA 60.536 55.000 0.00 0.00 0.00 2.83
2157 2257 0.875059 GAAGGACAAGGGCGACAAAG 59.125 55.000 0.00 0.00 0.00 2.77
2158 2258 0.472471 AAGGACAAGGGCGACAAAGA 59.528 50.000 0.00 0.00 0.00 2.52
2159 2259 0.250338 AGGACAAGGGCGACAAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
2160 2260 0.534203 GGACAAGGGCGACAAAGACA 60.534 55.000 0.00 0.00 0.00 3.41
2168 2268 1.860078 CGACAAAGACAAGGGCGAC 59.140 57.895 0.00 0.00 0.00 5.19
2202 2302 4.058817 AGACAAGCTTTACAAGGAACTCG 58.941 43.478 0.00 0.00 38.49 4.18
2418 2523 4.881019 AATTGAGCTACTGACTCACTGT 57.119 40.909 0.00 0.00 43.64 3.55
2419 2524 3.650070 TTGAGCTACTGACTCACTGTG 57.350 47.619 0.17 0.17 43.64 3.66
2470 2580 0.039798 TTCGTACTGTCGAGTGTGCC 60.040 55.000 0.00 0.00 40.86 5.01
2471 2581 0.887836 TCGTACTGTCGAGTGTGCCT 60.888 55.000 0.00 0.00 34.85 4.75
2472 2582 0.039437 CGTACTGTCGAGTGTGCCTT 60.039 55.000 0.00 0.00 33.21 4.35
2507 2617 8.533569 TTCTTGTCTCCTTGATTTACCTTTTT 57.466 30.769 0.00 0.00 0.00 1.94
2540 2650 4.524328 AGAACCAATTGACCATGGAGTTTC 59.476 41.667 21.47 5.87 39.12 2.78
2543 2653 2.128771 ATTGACCATGGAGTTTCGGG 57.871 50.000 21.47 0.00 0.00 5.14
2545 2655 1.749258 GACCATGGAGTTTCGGGGC 60.749 63.158 21.47 0.00 0.00 5.80
2548 2658 2.046314 ATGGAGTTTCGGGGCGTG 60.046 61.111 0.00 0.00 0.00 5.34
2570 2682 2.801679 TGTAATGTTTGTTCGACCGACC 59.198 45.455 0.00 0.00 0.00 4.79
2585 2697 1.344763 CCGACCTTGTGGAGACTTCTT 59.655 52.381 0.00 0.00 37.04 2.52
2595 2707 7.403312 TTGTGGAGACTTCTTCAAATTTGAA 57.597 32.000 27.39 27.39 44.31 2.69
2596 2708 6.795399 TGTGGAGACTTCTTCAAATTTGAAC 58.205 36.000 26.01 17.10 41.88 3.18
2633 2751 9.435570 TTTGCTAATTCTTATCTACTACTCCCT 57.564 33.333 0.00 0.00 0.00 4.20
2634 2752 8.638629 TGCTAATTCTTATCTACTACTCCCTC 57.361 38.462 0.00 0.00 0.00 4.30
2635 2753 7.670559 TGCTAATTCTTATCTACTACTCCCTCC 59.329 40.741 0.00 0.00 0.00 4.30
2636 2754 7.148205 GCTAATTCTTATCTACTACTCCCTCCG 60.148 44.444 0.00 0.00 0.00 4.63
2637 2755 5.643421 TTCTTATCTACTACTCCCTCCGT 57.357 43.478 0.00 0.00 0.00 4.69
2638 2756 5.643421 TCTTATCTACTACTCCCTCCGTT 57.357 43.478 0.00 0.00 0.00 4.44
2639 2757 5.619220 TCTTATCTACTACTCCCTCCGTTC 58.381 45.833 0.00 0.00 0.00 3.95
2640 2758 2.725221 TCTACTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
2641 2759 1.918262 TCTACTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
2642 2760 2.309755 TCTACTACTCCCTCCGTTCCAA 59.690 50.000 0.00 0.00 0.00 3.53
2643 2761 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2644 2762 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2645 2763 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2646 2764 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2647 2765 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2648 2766 2.910977 ACTCCCTCCGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
2649 2767 3.329814 ACTCCCTCCGTTCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
2650 2768 3.681593 TCCCTCCGTTCCAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
2651 2769 3.328343 TCCCTCCGTTCCAAAATACTTGA 59.672 43.478 0.00 0.00 0.00 3.02
2652 2770 3.439129 CCCTCCGTTCCAAAATACTTGAC 59.561 47.826 0.00 0.00 0.00 3.18
2653 2771 4.324267 CCTCCGTTCCAAAATACTTGACT 58.676 43.478 0.00 0.00 0.00 3.41
2654 2772 4.760204 CCTCCGTTCCAAAATACTTGACTT 59.240 41.667 0.00 0.00 0.00 3.01
2655 2773 5.240844 CCTCCGTTCCAAAATACTTGACTTT 59.759 40.000 0.00 0.00 0.00 2.66
2656 2774 6.308371 TCCGTTCCAAAATACTTGACTTTC 57.692 37.500 0.00 0.00 0.00 2.62
2657 2775 5.823570 TCCGTTCCAAAATACTTGACTTTCA 59.176 36.000 0.00 0.00 0.00 2.69
2658 2776 6.488683 TCCGTTCCAAAATACTTGACTTTCAT 59.511 34.615 0.00 0.00 0.00 2.57
2659 2777 7.013846 TCCGTTCCAAAATACTTGACTTTCATT 59.986 33.333 0.00 0.00 0.00 2.57
2660 2778 7.651704 CCGTTCCAAAATACTTGACTTTCATTT 59.348 33.333 0.00 0.00 0.00 2.32
2661 2779 8.479280 CGTTCCAAAATACTTGACTTTCATTTG 58.521 33.333 0.00 0.00 0.00 2.32
2662 2780 9.313118 GTTCCAAAATACTTGACTTTCATTTGT 57.687 29.630 0.00 0.00 0.00 2.83
2663 2781 9.883142 TTCCAAAATACTTGACTTTCATTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
2664 2782 9.883142 TCCAAAATACTTGACTTTCATTTGTTT 57.117 25.926 0.00 0.00 0.00 2.83
2738 2856 7.872163 TTGACAAATGAAAGTCATGTATTGC 57.128 32.000 0.00 0.00 43.57 3.56
2739 2857 6.085573 TGACAAATGAAAGTCATGTATTGCG 58.914 36.000 0.00 0.00 39.65 4.85
2740 2858 6.072783 TGACAAATGAAAGTCATGTATTGCGA 60.073 34.615 0.00 0.00 39.65 5.10
2741 2859 6.676950 ACAAATGAAAGTCATGTATTGCGAA 58.323 32.000 0.00 0.00 37.15 4.70
2742 2860 7.144661 ACAAATGAAAGTCATGTATTGCGAAA 58.855 30.769 0.00 0.00 37.15 3.46
2743 2861 7.114811 ACAAATGAAAGTCATGTATTGCGAAAC 59.885 33.333 0.00 0.00 37.15 2.78
2744 2862 4.707563 TGAAAGTCATGTATTGCGAAACG 58.292 39.130 0.00 0.00 0.00 3.60
2745 2863 3.740044 AAGTCATGTATTGCGAAACGG 57.260 42.857 0.00 0.00 0.00 4.44
2746 2864 2.967362 AGTCATGTATTGCGAAACGGA 58.033 42.857 0.00 0.00 0.00 4.69
2747 2865 2.930040 AGTCATGTATTGCGAAACGGAG 59.070 45.455 0.00 0.00 0.00 4.63
2748 2866 2.030457 GTCATGTATTGCGAAACGGAGG 59.970 50.000 0.00 0.00 0.00 4.30
2749 2867 2.093921 TCATGTATTGCGAAACGGAGGA 60.094 45.455 0.00 0.00 0.00 3.71
2750 2868 2.459060 TGTATTGCGAAACGGAGGAA 57.541 45.000 0.00 0.00 0.00 3.36
2751 2869 2.343101 TGTATTGCGAAACGGAGGAAG 58.657 47.619 0.00 0.00 0.00 3.46
2752 2870 2.289195 TGTATTGCGAAACGGAGGAAGT 60.289 45.455 0.00 0.00 0.00 3.01
2753 2871 2.754946 ATTGCGAAACGGAGGAAGTA 57.245 45.000 0.00 0.00 0.00 2.24
2754 2872 2.074547 TTGCGAAACGGAGGAAGTAG 57.925 50.000 0.00 0.00 0.00 2.57
2755 2873 1.250328 TGCGAAACGGAGGAAGTAGA 58.750 50.000 0.00 0.00 0.00 2.59
2756 2874 1.822990 TGCGAAACGGAGGAAGTAGAT 59.177 47.619 0.00 0.00 0.00 1.98
2757 2875 3.018856 TGCGAAACGGAGGAAGTAGATA 58.981 45.455 0.00 0.00 0.00 1.98
2758 2876 3.444742 TGCGAAACGGAGGAAGTAGATAA 59.555 43.478 0.00 0.00 0.00 1.75
2759 2877 4.043073 GCGAAACGGAGGAAGTAGATAAG 58.957 47.826 0.00 0.00 0.00 1.73
2760 2878 4.201990 GCGAAACGGAGGAAGTAGATAAGA 60.202 45.833 0.00 0.00 0.00 2.10
2761 2879 5.678107 GCGAAACGGAGGAAGTAGATAAGAA 60.678 44.000 0.00 0.00 0.00 2.52
2762 2880 6.505272 CGAAACGGAGGAAGTAGATAAGAAT 58.495 40.000 0.00 0.00 0.00 2.40
2763 2881 6.979238 CGAAACGGAGGAAGTAGATAAGAATT 59.021 38.462 0.00 0.00 0.00 2.17
2764 2882 7.491696 CGAAACGGAGGAAGTAGATAAGAATTT 59.508 37.037 0.00 0.00 0.00 1.82
2765 2883 9.813446 GAAACGGAGGAAGTAGATAAGAATTTA 57.187 33.333 0.00 0.00 0.00 1.40
2796 2914 7.334844 TGTTACATGTAAATTGTCAACCACA 57.665 32.000 19.63 7.14 0.00 4.17
2797 2915 7.197017 TGTTACATGTAAATTGTCAACCACAC 58.803 34.615 19.63 4.00 33.41 3.82
2798 2916 5.843673 ACATGTAAATTGTCAACCACACA 57.156 34.783 0.00 0.00 33.41 3.72
2799 2917 6.403866 ACATGTAAATTGTCAACCACACAT 57.596 33.333 0.00 0.00 33.41 3.21
2800 2918 6.446318 ACATGTAAATTGTCAACCACACATC 58.554 36.000 0.00 0.00 33.41 3.06
2801 2919 6.040278 ACATGTAAATTGTCAACCACACATCA 59.960 34.615 0.00 0.00 33.41 3.07
2802 2920 6.456795 TGTAAATTGTCAACCACACATCAA 57.543 33.333 0.00 0.00 33.41 2.57
2803 2921 6.867550 TGTAAATTGTCAACCACACATCAAA 58.132 32.000 0.00 0.00 33.41 2.69
2804 2922 7.323420 TGTAAATTGTCAACCACACATCAAAA 58.677 30.769 0.00 0.00 33.41 2.44
2805 2923 6.907206 AAATTGTCAACCACACATCAAAAG 57.093 33.333 0.00 0.00 33.41 2.27
2806 2924 4.383850 TTGTCAACCACACATCAAAAGG 57.616 40.909 0.00 0.00 33.41 3.11
2807 2925 2.100584 TGTCAACCACACATCAAAAGGC 59.899 45.455 0.00 0.00 0.00 4.35
2808 2926 2.362077 GTCAACCACACATCAAAAGGCT 59.638 45.455 0.00 0.00 0.00 4.58
2809 2927 2.361757 TCAACCACACATCAAAAGGCTG 59.638 45.455 0.00 0.00 0.00 4.85
2810 2928 2.361757 CAACCACACATCAAAAGGCTGA 59.638 45.455 0.00 0.00 0.00 4.26
2811 2929 2.665165 ACCACACATCAAAAGGCTGAA 58.335 42.857 0.00 0.00 0.00 3.02
2812 2930 3.030291 ACCACACATCAAAAGGCTGAAA 58.970 40.909 0.00 0.00 0.00 2.69
2813 2931 3.642848 ACCACACATCAAAAGGCTGAAAT 59.357 39.130 0.00 0.00 0.00 2.17
2814 2932 4.832266 ACCACACATCAAAAGGCTGAAATA 59.168 37.500 0.00 0.00 0.00 1.40
2815 2933 5.481473 ACCACACATCAAAAGGCTGAAATAT 59.519 36.000 0.00 0.00 0.00 1.28
2816 2934 6.014327 ACCACACATCAAAAGGCTGAAATATT 60.014 34.615 0.00 0.00 0.00 1.28
2817 2935 6.532657 CCACACATCAAAAGGCTGAAATATTC 59.467 38.462 0.00 0.00 0.00 1.75
2818 2936 6.252015 CACACATCAAAAGGCTGAAATATTCG 59.748 38.462 0.00 0.00 0.00 3.34
2819 2937 6.071952 ACACATCAAAAGGCTGAAATATTCGT 60.072 34.615 0.00 0.00 0.00 3.85
2820 2938 6.252015 CACATCAAAAGGCTGAAATATTCGTG 59.748 38.462 0.00 0.00 0.00 4.35
2821 2939 4.732784 TCAAAAGGCTGAAATATTCGTGC 58.267 39.130 0.00 0.00 0.00 5.34
2822 2940 4.217334 TCAAAAGGCTGAAATATTCGTGCA 59.783 37.500 0.00 0.00 34.76 4.57
2823 2941 4.782019 AAAGGCTGAAATATTCGTGCAA 57.218 36.364 0.00 0.00 34.76 4.08
2824 2942 4.782019 AAGGCTGAAATATTCGTGCAAA 57.218 36.364 0.00 0.00 34.76 3.68
2825 2943 4.782019 AGGCTGAAATATTCGTGCAAAA 57.218 36.364 0.00 0.00 34.76 2.44
2826 2944 4.485163 AGGCTGAAATATTCGTGCAAAAC 58.515 39.130 0.00 0.00 34.76 2.43
2827 2945 4.218417 AGGCTGAAATATTCGTGCAAAACT 59.782 37.500 0.00 0.00 34.76 2.66
2828 2946 4.923281 GGCTGAAATATTCGTGCAAAACTT 59.077 37.500 0.00 0.00 34.76 2.66
2829 2947 5.405269 GGCTGAAATATTCGTGCAAAACTTT 59.595 36.000 0.00 0.00 34.76 2.66
2830 2948 6.073819 GGCTGAAATATTCGTGCAAAACTTTT 60.074 34.615 0.00 0.00 34.76 2.27
2831 2949 6.787043 GCTGAAATATTCGTGCAAAACTTTTG 59.213 34.615 9.54 9.54 33.78 2.44
2832 2950 7.306515 GCTGAAATATTCGTGCAAAACTTTTGA 60.307 33.333 16.90 1.38 33.78 2.69
2833 2951 8.586570 TGAAATATTCGTGCAAAACTTTTGAT 57.413 26.923 16.90 4.92 0.00 2.57
2834 2952 8.698854 TGAAATATTCGTGCAAAACTTTTGATC 58.301 29.630 16.90 8.23 0.00 2.92
2835 2953 8.816640 AAATATTCGTGCAAAACTTTTGATCT 57.183 26.923 16.90 0.00 0.00 2.75
2836 2954 8.816640 AATATTCGTGCAAAACTTTTGATCTT 57.183 26.923 16.90 0.00 0.00 2.40
2837 2955 5.947503 TTCGTGCAAAACTTTTGATCTTG 57.052 34.783 16.90 3.20 0.00 3.02
2838 2956 4.992688 TCGTGCAAAACTTTTGATCTTGT 58.007 34.783 16.90 0.00 0.00 3.16
2839 2957 5.034152 TCGTGCAAAACTTTTGATCTTGTC 58.966 37.500 16.90 0.00 0.00 3.18
2840 2958 4.207019 CGTGCAAAACTTTTGATCTTGTCC 59.793 41.667 16.90 0.00 0.00 4.02
2841 2959 5.351458 GTGCAAAACTTTTGATCTTGTCCT 58.649 37.500 16.90 0.00 0.00 3.85
2842 2960 5.812127 GTGCAAAACTTTTGATCTTGTCCTT 59.188 36.000 16.90 0.00 0.00 3.36
2843 2961 5.811613 TGCAAAACTTTTGATCTTGTCCTTG 59.188 36.000 16.90 0.00 0.00 3.61
2844 2962 5.277011 GCAAAACTTTTGATCTTGTCCTTGC 60.277 40.000 16.90 0.74 0.00 4.01
2845 2963 5.596836 AAACTTTTGATCTTGTCCTTGCA 57.403 34.783 0.00 0.00 0.00 4.08
2846 2964 5.596836 AACTTTTGATCTTGTCCTTGCAA 57.403 34.783 0.00 0.00 0.00 4.08
2847 2965 5.596836 ACTTTTGATCTTGTCCTTGCAAA 57.403 34.783 0.00 0.00 0.00 3.68
2848 2966 5.976458 ACTTTTGATCTTGTCCTTGCAAAA 58.024 33.333 0.00 0.00 34.99 2.44
2849 2967 6.405538 ACTTTTGATCTTGTCCTTGCAAAAA 58.594 32.000 0.00 0.00 35.58 1.94
2850 2968 6.536224 ACTTTTGATCTTGTCCTTGCAAAAAG 59.464 34.615 0.00 5.52 35.58 2.27
2851 2969 3.981211 TGATCTTGTCCTTGCAAAAAGC 58.019 40.909 0.00 0.00 45.96 3.51
2852 2970 3.638160 TGATCTTGTCCTTGCAAAAAGCT 59.362 39.130 0.00 0.00 45.94 3.74
2853 2971 3.441496 TCTTGTCCTTGCAAAAAGCTG 57.559 42.857 0.00 0.00 45.94 4.24
2854 2972 2.760092 TCTTGTCCTTGCAAAAAGCTGT 59.240 40.909 0.00 0.00 45.94 4.40
2855 2973 3.951037 TCTTGTCCTTGCAAAAAGCTGTA 59.049 39.130 0.00 0.00 45.94 2.74
2856 2974 3.988379 TGTCCTTGCAAAAAGCTGTAG 57.012 42.857 0.00 0.00 45.94 2.74
2857 2975 2.034558 TGTCCTTGCAAAAAGCTGTAGC 59.965 45.455 0.00 0.00 45.94 3.58
2858 2976 2.034558 GTCCTTGCAAAAAGCTGTAGCA 59.965 45.455 0.00 0.02 45.94 3.49
2859 2977 2.034558 TCCTTGCAAAAAGCTGTAGCAC 59.965 45.455 0.00 0.00 45.94 4.40
2860 2978 2.397549 CTTGCAAAAAGCTGTAGCACC 58.602 47.619 0.00 0.00 45.94 5.01
2861 2979 1.691196 TGCAAAAAGCTGTAGCACCT 58.309 45.000 6.65 0.00 45.94 4.00
2862 2980 2.857483 TGCAAAAAGCTGTAGCACCTA 58.143 42.857 6.65 0.00 45.94 3.08
2863 2981 2.552315 TGCAAAAAGCTGTAGCACCTAC 59.448 45.455 6.65 0.00 45.94 3.18
2864 2982 2.095212 GCAAAAAGCTGTAGCACCTACC 60.095 50.000 6.65 0.00 45.16 3.18
2865 2983 2.488153 CAAAAAGCTGTAGCACCTACCC 59.512 50.000 6.65 0.00 45.16 3.69
2866 2984 0.249398 AAAGCTGTAGCACCTACCCG 59.751 55.000 6.65 0.00 45.16 5.28
2867 2985 0.613853 AAGCTGTAGCACCTACCCGA 60.614 55.000 6.65 0.00 45.16 5.14
2868 2986 1.038130 AGCTGTAGCACCTACCCGAG 61.038 60.000 6.65 0.00 45.16 4.63
2869 2987 1.437986 CTGTAGCACCTACCCGAGC 59.562 63.158 0.40 0.00 36.24 5.03
2870 2988 1.304630 TGTAGCACCTACCCGAGCA 60.305 57.895 0.40 0.00 36.24 4.26
2871 2989 1.141234 GTAGCACCTACCCGAGCAC 59.859 63.158 0.00 0.00 31.38 4.40
2872 2990 1.304630 TAGCACCTACCCGAGCACA 60.305 57.895 0.00 0.00 0.00 4.57
2873 2991 0.686441 TAGCACCTACCCGAGCACAT 60.686 55.000 0.00 0.00 0.00 3.21
2874 2992 1.521681 GCACCTACCCGAGCACATC 60.522 63.158 0.00 0.00 0.00 3.06
2875 2993 1.897423 CACCTACCCGAGCACATCA 59.103 57.895 0.00 0.00 0.00 3.07
2876 2994 0.465705 CACCTACCCGAGCACATCAT 59.534 55.000 0.00 0.00 0.00 2.45
2877 2995 0.753262 ACCTACCCGAGCACATCATC 59.247 55.000 0.00 0.00 0.00 2.92
2878 2996 0.319040 CCTACCCGAGCACATCATCG 60.319 60.000 0.00 0.00 38.65 3.84
2879 2997 0.941463 CTACCCGAGCACATCATCGC 60.941 60.000 0.00 0.00 37.61 4.58
2880 2998 2.363711 TACCCGAGCACATCATCGCC 62.364 60.000 0.00 0.00 37.61 5.54
2881 2999 3.333189 CCGAGCACATCATCGCCG 61.333 66.667 0.00 0.00 37.61 6.46
2882 3000 3.333189 CGAGCACATCATCGCCGG 61.333 66.667 0.00 0.00 31.42 6.13
2883 3001 2.969238 GAGCACATCATCGCCGGG 60.969 66.667 2.18 0.00 0.00 5.73
2884 3002 4.552365 AGCACATCATCGCCGGGG 62.552 66.667 13.31 13.31 0.00 5.73
2885 3003 4.545706 GCACATCATCGCCGGGGA 62.546 66.667 24.79 24.79 0.00 4.81
2886 3004 2.427320 CACATCATCGCCGGGGAT 59.573 61.111 27.11 27.11 0.00 3.85
2887 3005 1.962822 CACATCATCGCCGGGGATG 60.963 63.158 41.25 41.25 44.10 3.51
2888 3006 2.359107 CATCATCGCCGGGGATGG 60.359 66.667 43.40 31.45 43.18 3.51
2889 3007 2.526624 ATCATCGCCGGGGATGGA 60.527 61.111 43.40 33.76 43.18 3.41
2890 3008 2.146724 ATCATCGCCGGGGATGGAA 61.147 57.895 43.40 32.61 43.18 3.53
2891 3009 2.397413 ATCATCGCCGGGGATGGAAC 62.397 60.000 43.40 11.11 43.18 3.62
2892 3010 3.873812 ATCGCCGGGGATGGAACC 61.874 66.667 31.17 0.00 0.00 3.62
2895 3013 3.728373 GCCGGGGATGGAACCACT 61.728 66.667 2.18 0.00 0.00 4.00
2896 3014 3.087065 CCGGGGATGGAACCACTT 58.913 61.111 0.00 0.00 0.00 3.16
2897 3015 1.378514 CCGGGGATGGAACCACTTG 60.379 63.158 0.00 0.00 0.00 3.16
2898 3016 1.378514 CGGGGATGGAACCACTTGG 60.379 63.158 0.00 0.00 42.17 3.61
2914 3032 5.130350 CCACTTGGTACTATAATGGGTTGG 58.870 45.833 0.00 0.00 0.00 3.77
2915 3033 4.578928 CACTTGGTACTATAATGGGTTGGC 59.421 45.833 0.00 0.00 0.00 4.52
2916 3034 3.868619 TGGTACTATAATGGGTTGGCC 57.131 47.619 0.00 0.00 0.00 5.36
2917 3035 3.124066 TGGTACTATAATGGGTTGGCCA 58.876 45.455 0.00 0.00 36.17 5.36
2918 3036 3.117813 TGGTACTATAATGGGTTGGCCAC 60.118 47.826 3.88 0.00 36.17 5.01
2919 3037 2.748209 ACTATAATGGGTTGGCCACC 57.252 50.000 3.88 10.71 46.46 4.61
2926 3044 3.443588 GGTTGGCCACCAGTTCAC 58.556 61.111 3.88 0.00 46.42 3.18
2927 3045 1.454847 GGTTGGCCACCAGTTCACA 60.455 57.895 3.88 0.00 46.42 3.58
2928 3046 1.040339 GGTTGGCCACCAGTTCACAA 61.040 55.000 3.88 0.00 46.42 3.33
2929 3047 1.039856 GTTGGCCACCAGTTCACAAT 58.960 50.000 3.88 0.00 33.81 2.71
2930 3048 1.000274 GTTGGCCACCAGTTCACAATC 60.000 52.381 3.88 0.00 33.81 2.67
2931 3049 0.888736 TGGCCACCAGTTCACAATCG 60.889 55.000 0.00 0.00 0.00 3.34
2932 3050 1.586154 GGCCACCAGTTCACAATCGG 61.586 60.000 0.00 0.00 0.00 4.18
2933 3051 1.875963 CCACCAGTTCACAATCGGC 59.124 57.895 0.00 0.00 0.00 5.54
2934 3052 0.606401 CCACCAGTTCACAATCGGCT 60.606 55.000 0.00 0.00 0.00 5.52
2935 3053 0.518636 CACCAGTTCACAATCGGCTG 59.481 55.000 0.00 0.00 0.00 4.85
2936 3054 0.108585 ACCAGTTCACAATCGGCTGT 59.891 50.000 0.00 0.00 0.00 4.40
2937 3055 1.346395 ACCAGTTCACAATCGGCTGTA 59.654 47.619 0.00 0.00 0.00 2.74
2938 3056 2.224426 ACCAGTTCACAATCGGCTGTAA 60.224 45.455 0.00 0.00 0.00 2.41
2939 3057 2.811431 CCAGTTCACAATCGGCTGTAAA 59.189 45.455 0.00 0.00 0.00 2.01
2940 3058 3.440173 CCAGTTCACAATCGGCTGTAAAT 59.560 43.478 0.00 0.00 0.00 1.40
2941 3059 4.437390 CCAGTTCACAATCGGCTGTAAATC 60.437 45.833 0.00 0.00 0.00 2.17
2942 3060 3.370978 AGTTCACAATCGGCTGTAAATCG 59.629 43.478 0.00 0.00 0.00 3.34
2943 3061 2.276201 TCACAATCGGCTGTAAATCGG 58.724 47.619 0.00 0.00 0.00 4.18
2944 3062 2.093921 TCACAATCGGCTGTAAATCGGA 60.094 45.455 0.00 0.00 0.00 4.55
2945 3063 2.030457 CACAATCGGCTGTAAATCGGAC 59.970 50.000 0.00 0.00 0.00 4.79
2946 3064 2.276201 CAATCGGCTGTAAATCGGACA 58.724 47.619 0.00 0.00 0.00 4.02
2947 3065 1.935933 ATCGGCTGTAAATCGGACAC 58.064 50.000 0.00 0.00 0.00 3.67
2948 3066 0.604073 TCGGCTGTAAATCGGACACA 59.396 50.000 0.00 0.00 0.00 3.72
2949 3067 1.001068 TCGGCTGTAAATCGGACACAA 59.999 47.619 0.00 0.00 0.00 3.33
2950 3068 1.393539 CGGCTGTAAATCGGACACAAG 59.606 52.381 0.00 0.00 0.00 3.16
2951 3069 2.695359 GGCTGTAAATCGGACACAAGA 58.305 47.619 0.00 0.00 0.00 3.02
2952 3070 3.270877 GGCTGTAAATCGGACACAAGAT 58.729 45.455 0.00 0.00 0.00 2.40
2953 3071 4.439057 GGCTGTAAATCGGACACAAGATA 58.561 43.478 0.00 0.00 0.00 1.98
2954 3072 4.873827 GGCTGTAAATCGGACACAAGATAA 59.126 41.667 0.00 0.00 0.00 1.75
2955 3073 5.006746 GGCTGTAAATCGGACACAAGATAAG 59.993 44.000 0.00 0.00 0.00 1.73
2956 3074 5.581085 GCTGTAAATCGGACACAAGATAAGT 59.419 40.000 0.00 0.00 0.00 2.24
2957 3075 6.455646 GCTGTAAATCGGACACAAGATAAGTG 60.456 42.308 0.00 0.00 42.56 3.16
2958 3076 5.872617 TGTAAATCGGACACAAGATAAGTGG 59.127 40.000 0.00 0.00 41.21 4.00
2959 3077 4.819105 AATCGGACACAAGATAAGTGGA 57.181 40.909 0.00 0.00 41.21 4.02
2960 3078 3.587797 TCGGACACAAGATAAGTGGAC 57.412 47.619 0.00 0.00 41.21 4.02
2961 3079 2.894765 TCGGACACAAGATAAGTGGACA 59.105 45.455 0.00 0.00 41.21 4.02
2962 3080 3.513912 TCGGACACAAGATAAGTGGACAT 59.486 43.478 0.00 0.00 41.21 3.06
2963 3081 3.865745 CGGACACAAGATAAGTGGACATC 59.134 47.826 0.00 0.00 41.21 3.06
2964 3082 3.865745 GGACACAAGATAAGTGGACATCG 59.134 47.826 0.00 0.00 41.21 3.84
2965 3083 3.861840 ACACAAGATAAGTGGACATCGG 58.138 45.455 0.00 0.00 41.21 4.18
2966 3084 3.513912 ACACAAGATAAGTGGACATCGGA 59.486 43.478 0.00 0.00 41.21 4.55
2967 3085 3.865745 CACAAGATAAGTGGACATCGGAC 59.134 47.826 0.00 0.00 33.43 4.79
2968 3086 3.769844 ACAAGATAAGTGGACATCGGACT 59.230 43.478 0.00 0.00 0.00 3.85
2969 3087 4.115516 CAAGATAAGTGGACATCGGACTG 58.884 47.826 0.00 0.00 0.00 3.51
2970 3088 2.101582 AGATAAGTGGACATCGGACTGC 59.898 50.000 0.00 0.00 0.00 4.40
2971 3089 0.172578 TAAGTGGACATCGGACTGCG 59.827 55.000 0.00 0.00 0.00 5.18
2972 3090 3.188786 GTGGACATCGGACTGCGC 61.189 66.667 0.00 0.00 0.00 6.09
2973 3091 4.451150 TGGACATCGGACTGCGCC 62.451 66.667 4.18 0.00 0.00 6.53
2975 3093 4.451150 GACATCGGACTGCGCCCA 62.451 66.667 4.18 0.00 0.00 5.36
2976 3094 3.950794 GACATCGGACTGCGCCCAA 62.951 63.158 4.18 0.00 0.00 4.12
2977 3095 2.745884 CATCGGACTGCGCCCAAA 60.746 61.111 4.18 0.00 0.00 3.28
2978 3096 2.746277 ATCGGACTGCGCCCAAAC 60.746 61.111 4.18 0.00 0.00 2.93
2989 3107 3.979497 CCCAAACCGCCTCCCCTT 61.979 66.667 0.00 0.00 0.00 3.95
2990 3108 2.117423 CCAAACCGCCTCCCCTTT 59.883 61.111 0.00 0.00 0.00 3.11
2991 3109 2.275380 CCAAACCGCCTCCCCTTTG 61.275 63.158 0.00 0.00 0.00 2.77
2992 3110 1.228429 CAAACCGCCTCCCCTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
2993 3111 1.228459 AAACCGCCTCCCCTTTGAC 60.228 57.895 0.00 0.00 0.00 3.18
2994 3112 2.708593 AAACCGCCTCCCCTTTGACC 62.709 60.000 0.00 0.00 0.00 4.02
2995 3113 3.646715 CCGCCTCCCCTTTGACCA 61.647 66.667 0.00 0.00 0.00 4.02
2996 3114 2.434331 CGCCTCCCCTTTGACCAA 59.566 61.111 0.00 0.00 0.00 3.67
2997 3115 1.971695 CGCCTCCCCTTTGACCAAC 60.972 63.158 0.00 0.00 0.00 3.77
2998 3116 1.152830 GCCTCCCCTTTGACCAACA 59.847 57.895 0.00 0.00 0.00 3.33
2999 3117 0.895559 GCCTCCCCTTTGACCAACAG 60.896 60.000 0.00 0.00 0.00 3.16
3000 3118 0.771127 CCTCCCCTTTGACCAACAGA 59.229 55.000 0.00 0.00 0.00 3.41
3001 3119 1.355720 CCTCCCCTTTGACCAACAGAT 59.644 52.381 0.00 0.00 0.00 2.90
3002 3120 2.576191 CCTCCCCTTTGACCAACAGATA 59.424 50.000 0.00 0.00 0.00 1.98
3003 3121 3.610911 CTCCCCTTTGACCAACAGATAC 58.389 50.000 0.00 0.00 0.00 2.24
3004 3122 2.027561 TCCCCTTTGACCAACAGATACG 60.028 50.000 0.00 0.00 0.00 3.06
3005 3123 2.027561 CCCCTTTGACCAACAGATACGA 60.028 50.000 0.00 0.00 0.00 3.43
3006 3124 3.558321 CCCCTTTGACCAACAGATACGAA 60.558 47.826 0.00 0.00 0.00 3.85
3007 3125 3.684788 CCCTTTGACCAACAGATACGAAG 59.315 47.826 0.00 0.00 0.00 3.79
3008 3126 3.684788 CCTTTGACCAACAGATACGAAGG 59.315 47.826 0.00 0.00 36.31 3.46
3009 3127 2.380084 TGACCAACAGATACGAAGGC 57.620 50.000 0.00 0.00 0.00 4.35
3010 3128 1.278238 GACCAACAGATACGAAGGCG 58.722 55.000 0.00 0.00 44.79 5.52
3011 3129 0.108329 ACCAACAGATACGAAGGCGG 60.108 55.000 0.00 0.00 43.17 6.13
3012 3130 1.429148 CCAACAGATACGAAGGCGGC 61.429 60.000 0.00 0.00 43.17 6.53
3013 3131 0.460284 CAACAGATACGAAGGCGGCT 60.460 55.000 5.25 5.25 43.17 5.52
3014 3132 1.108776 AACAGATACGAAGGCGGCTA 58.891 50.000 13.71 0.00 43.17 3.93
3015 3133 0.384669 ACAGATACGAAGGCGGCTAC 59.615 55.000 13.71 0.01 43.17 3.58
3016 3134 0.660595 CAGATACGAAGGCGGCTACG 60.661 60.000 13.71 6.22 43.17 3.51
3017 3135 0.816825 AGATACGAAGGCGGCTACGA 60.817 55.000 13.71 0.00 44.60 3.43
3018 3136 0.029834 GATACGAAGGCGGCTACGAA 59.970 55.000 13.71 0.00 44.60 3.85
3019 3137 0.030369 ATACGAAGGCGGCTACGAAG 59.970 55.000 13.71 4.71 44.60 3.79
3020 3138 1.026182 TACGAAGGCGGCTACGAAGA 61.026 55.000 13.71 0.00 44.60 2.87
3021 3139 1.153901 CGAAGGCGGCTACGAAGAA 60.154 57.895 13.71 0.00 44.60 2.52
3022 3140 0.527817 CGAAGGCGGCTACGAAGAAT 60.528 55.000 13.71 0.00 44.60 2.40
3023 3141 0.931005 GAAGGCGGCTACGAAGAATG 59.069 55.000 13.71 0.00 44.60 2.67
3024 3142 0.249398 AAGGCGGCTACGAAGAATGT 59.751 50.000 13.71 0.00 44.60 2.71
3025 3143 0.179108 AGGCGGCTACGAAGAATGTC 60.179 55.000 11.03 0.00 44.60 3.06
3026 3144 1.480219 GGCGGCTACGAAGAATGTCG 61.480 60.000 0.00 0.00 46.54 4.35
3027 3145 1.480219 GCGGCTACGAAGAATGTCGG 61.480 60.000 0.00 0.00 45.40 4.79
3028 3146 1.480219 CGGCTACGAAGAATGTCGGC 61.480 60.000 0.00 0.00 45.40 5.54
3029 3147 1.480219 GGCTACGAAGAATGTCGGCG 61.480 60.000 0.00 0.00 45.40 6.46
3030 3148 1.917921 CTACGAAGAATGTCGGCGC 59.082 57.895 0.00 0.00 45.40 6.53
3031 3149 0.525668 CTACGAAGAATGTCGGCGCT 60.526 55.000 7.64 0.00 45.40 5.92
3032 3150 0.108992 TACGAAGAATGTCGGCGCTT 60.109 50.000 7.64 0.00 45.40 4.68
3033 3151 1.345176 CGAAGAATGTCGGCGCTTC 59.655 57.895 7.64 8.09 37.37 3.86
3034 3152 1.351430 CGAAGAATGTCGGCGCTTCA 61.351 55.000 19.24 11.76 37.25 3.02
3035 3153 0.796312 GAAGAATGTCGGCGCTTCAA 59.204 50.000 7.64 0.00 37.34 2.69
3036 3154 1.196808 GAAGAATGTCGGCGCTTCAAA 59.803 47.619 7.64 0.00 37.34 2.69
3037 3155 0.517316 AGAATGTCGGCGCTTCAAAC 59.483 50.000 7.64 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 200 5.887598 TGGATATGGGATGAAAAACTGACAG 59.112 40.000 0.00 0.00 0.00 3.51
281 282 2.751259 TGCAATGCTGGAGATGAAGTTC 59.249 45.455 6.82 0.00 0.00 3.01
476 477 7.674120 TCAGTGAAATCTACATCCAGGATATG 58.326 38.462 0.00 0.00 0.00 1.78
548 549 6.436843 ACGAAGCGAATTCCAGAAATAATT 57.563 33.333 0.00 0.00 34.10 1.40
669 672 5.946298 TGTTAAGATGCTTTGCTGAATGAG 58.054 37.500 0.00 0.00 0.00 2.90
746 794 2.912624 GCTGCAGTGACACCCAAGC 61.913 63.158 16.64 5.16 0.00 4.01
806 854 5.840267 CGATTTGCAAACTTTGGAATTTTCG 59.160 36.000 15.41 11.17 40.72 3.46
830 878 4.837972 ACTTCAGAATTGGAGAAGCTACC 58.162 43.478 9.74 0.00 41.80 3.18
845 893 7.289549 ACATGATTATCATCTCCAGACTTCAGA 59.710 37.037 4.51 0.00 34.28 3.27
881 929 0.603707 CTCCTTCCGTGAGCAAAGCA 60.604 55.000 0.00 0.00 0.00 3.91
901 949 3.969287 AGCTGAGTGTTGAGATGCTTA 57.031 42.857 0.00 0.00 0.00 3.09
941 990 0.938008 GGAGCTTACGCCATTAGCAC 59.062 55.000 0.00 0.00 44.04 4.40
986 1064 2.629617 TGCGCCATGATTATCTCTCTCA 59.370 45.455 4.18 0.00 0.00 3.27
987 1065 3.252400 CTGCGCCATGATTATCTCTCTC 58.748 50.000 4.18 0.00 0.00 3.20
1094 1172 0.460987 GAAGATGTGGTCCAGCTCCG 60.461 60.000 0.00 0.00 39.37 4.63
1097 1175 1.599047 CGGAAGATGTGGTCCAGCT 59.401 57.895 0.00 0.00 42.98 4.24
1284 1362 4.492160 TCGCTCACCGACGGCATC 62.492 66.667 15.39 0.00 41.89 3.91
1444 1525 2.725644 CGTAGCTCGTTGTCCACTG 58.274 57.895 0.00 0.00 34.52 3.66
1536 1617 1.406860 GCACCTGATCCTCCTCCTCC 61.407 65.000 0.00 0.00 0.00 4.30
1752 1842 0.179134 CCTTGTCGACGATGTCCTCC 60.179 60.000 11.62 0.00 0.00 4.30
1779 1869 3.050275 GTGGCTGCCTTGACGACC 61.050 66.667 21.03 0.00 0.00 4.79
1810 1900 1.330655 ACGCCGATCCTGGACTTGAT 61.331 55.000 0.00 0.00 0.00 2.57
1811 1901 1.982395 ACGCCGATCCTGGACTTGA 60.982 57.895 0.00 0.00 0.00 3.02
2137 2237 0.536460 TTTGTCGCCCTTGTCCTTCC 60.536 55.000 0.00 0.00 0.00 3.46
2138 2238 0.875059 CTTTGTCGCCCTTGTCCTTC 59.125 55.000 0.00 0.00 0.00 3.46
2139 2239 0.472471 TCTTTGTCGCCCTTGTCCTT 59.528 50.000 0.00 0.00 0.00 3.36
2140 2240 0.250338 GTCTTTGTCGCCCTTGTCCT 60.250 55.000 0.00 0.00 0.00 3.85
2141 2241 0.534203 TGTCTTTGTCGCCCTTGTCC 60.534 55.000 0.00 0.00 0.00 4.02
2142 2242 1.264288 CTTGTCTTTGTCGCCCTTGTC 59.736 52.381 0.00 0.00 0.00 3.18
2143 2243 1.308998 CTTGTCTTTGTCGCCCTTGT 58.691 50.000 0.00 0.00 0.00 3.16
2144 2244 0.593128 CCTTGTCTTTGTCGCCCTTG 59.407 55.000 0.00 0.00 0.00 3.61
2145 2245 0.537371 CCCTTGTCTTTGTCGCCCTT 60.537 55.000 0.00 0.00 0.00 3.95
2146 2246 1.073199 CCCTTGTCTTTGTCGCCCT 59.927 57.895 0.00 0.00 0.00 5.19
2147 2247 2.626780 GCCCTTGTCTTTGTCGCCC 61.627 63.158 0.00 0.00 0.00 6.13
2148 2248 2.954611 GCCCTTGTCTTTGTCGCC 59.045 61.111 0.00 0.00 0.00 5.54
2149 2249 1.959226 TCGCCCTTGTCTTTGTCGC 60.959 57.895 0.00 0.00 0.00 5.19
2150 2250 0.878523 TGTCGCCCTTGTCTTTGTCG 60.879 55.000 0.00 0.00 0.00 4.35
2151 2251 1.264288 CTTGTCGCCCTTGTCTTTGTC 59.736 52.381 0.00 0.00 0.00 3.18
2152 2252 1.308998 CTTGTCGCCCTTGTCTTTGT 58.691 50.000 0.00 0.00 0.00 2.83
2153 2253 0.593128 CCTTGTCGCCCTTGTCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
2154 2254 0.472471 TCCTTGTCGCCCTTGTCTTT 59.528 50.000 0.00 0.00 0.00 2.52
2155 2255 0.035458 CTCCTTGTCGCCCTTGTCTT 59.965 55.000 0.00 0.00 0.00 3.01
2156 2256 1.674057 CTCCTTGTCGCCCTTGTCT 59.326 57.895 0.00 0.00 0.00 3.41
2157 2257 1.376037 CCTCCTTGTCGCCCTTGTC 60.376 63.158 0.00 0.00 0.00 3.18
2158 2258 1.831652 CTCCTCCTTGTCGCCCTTGT 61.832 60.000 0.00 0.00 0.00 3.16
2159 2259 1.078848 CTCCTCCTTGTCGCCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
2160 2260 2.294078 CCTCCTCCTTGTCGCCCTT 61.294 63.158 0.00 0.00 0.00 3.95
2168 2268 1.627834 AGCTTGTCTTCCTCCTCCTTG 59.372 52.381 0.00 0.00 0.00 3.61
2202 2302 6.151691 CGATGATCTCCTTCTTCATCTCTTC 58.848 44.000 9.64 0.00 42.22 2.87
2214 2314 2.420687 GGCACTTTCCGATGATCTCCTT 60.421 50.000 0.00 0.00 0.00 3.36
2404 2505 1.067743 CGCGCACAGTGAGTCAGTAG 61.068 60.000 8.75 0.00 0.00 2.57
2405 2506 1.081442 CGCGCACAGTGAGTCAGTA 60.081 57.895 8.75 0.00 0.00 2.74
2417 2522 2.574212 GCACATAAGCACGCGCAC 60.574 61.111 5.73 0.00 42.27 5.34
2418 2523 2.739704 GAGCACATAAGCACGCGCA 61.740 57.895 5.73 0.00 42.27 6.09
2419 2524 2.021931 GAGCACATAAGCACGCGC 59.978 61.111 5.73 0.00 36.85 6.86
2478 2588 7.518188 AGGTAAATCAAGGAGACAAGAAAAGA 58.482 34.615 0.00 0.00 0.00 2.52
2479 2589 7.751768 AGGTAAATCAAGGAGACAAGAAAAG 57.248 36.000 0.00 0.00 0.00 2.27
2507 2617 7.747155 TGGTCAATTGGTTCTCGTAATAAAA 57.253 32.000 5.42 0.00 0.00 1.52
2511 2621 4.640201 CCATGGTCAATTGGTTCTCGTAAT 59.360 41.667 2.57 0.00 0.00 1.89
2512 2622 4.006989 CCATGGTCAATTGGTTCTCGTAA 58.993 43.478 2.57 0.00 0.00 3.18
2513 2623 3.262151 TCCATGGTCAATTGGTTCTCGTA 59.738 43.478 12.58 0.00 34.48 3.43
2515 2625 2.679837 CTCCATGGTCAATTGGTTCTCG 59.320 50.000 12.58 0.00 34.48 4.04
2516 2626 3.690460 ACTCCATGGTCAATTGGTTCTC 58.310 45.455 12.58 0.00 34.48 2.87
2518 2628 4.615912 CGAAACTCCATGGTCAATTGGTTC 60.616 45.833 12.58 9.35 34.48 3.62
2519 2629 3.255642 CGAAACTCCATGGTCAATTGGTT 59.744 43.478 12.58 1.44 34.48 3.67
2520 2630 2.819608 CGAAACTCCATGGTCAATTGGT 59.180 45.455 12.58 0.00 34.48 3.67
2522 2632 2.164219 CCCGAAACTCCATGGTCAATTG 59.836 50.000 12.58 0.00 0.00 2.32
2524 2634 1.340991 CCCCGAAACTCCATGGTCAAT 60.341 52.381 12.58 0.00 0.00 2.57
2526 2636 1.682849 CCCCGAAACTCCATGGTCA 59.317 57.895 12.58 0.00 0.00 4.02
2529 2639 2.824041 CGCCCCGAAACTCCATGG 60.824 66.667 4.97 4.97 0.00 3.66
2540 2650 0.109964 CAAACATTACACACGCCCCG 60.110 55.000 0.00 0.00 0.00 5.73
2543 2653 2.032722 TCGAACAAACATTACACACGCC 60.033 45.455 0.00 0.00 0.00 5.68
2545 2655 3.537806 GGTCGAACAAACATTACACACG 58.462 45.455 0.00 0.00 0.00 4.49
2548 2658 3.363280 GGTCGGTCGAACAAACATTACAC 60.363 47.826 0.00 0.00 0.00 2.90
2570 2682 7.031226 TCAAATTTGAAGAAGTCTCCACAAG 57.969 36.000 18.45 0.00 33.55 3.16
2619 2737 3.718434 TGGAACGGAGGGAGTAGTAGATA 59.282 47.826 0.00 0.00 0.00 1.98
2625 2743 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2626 2744 4.098894 AGTATTTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2627 2745 2.910977 AGTATTTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2628 2746 3.629142 AGTATTTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2629 2747 3.328343 TCAAGTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
2630 2748 3.439129 GTCAAGTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
2631 2749 4.324267 AGTCAAGTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2632 2750 5.941948 AAGTCAAGTATTTTGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
2633 2751 5.823570 TGAAAGTCAAGTATTTTGGAACGGA 59.176 36.000 0.00 0.00 0.00 4.69
2634 2752 6.067263 TGAAAGTCAAGTATTTTGGAACGG 57.933 37.500 0.00 0.00 0.00 4.44
2635 2753 8.479280 CAAATGAAAGTCAAGTATTTTGGAACG 58.521 33.333 0.00 0.00 0.00 3.95
2636 2754 9.313118 ACAAATGAAAGTCAAGTATTTTGGAAC 57.687 29.630 0.00 0.00 30.08 3.62
2637 2755 9.883142 AACAAATGAAAGTCAAGTATTTTGGAA 57.117 25.926 0.00 0.00 30.08 3.53
2638 2756 9.883142 AAACAAATGAAAGTCAAGTATTTTGGA 57.117 25.926 0.00 0.00 30.08 3.53
2712 2830 8.763356 GCAATACATGACTTTCATTTGTCAAAA 58.237 29.630 0.00 0.00 44.81 2.44
2713 2831 7.114670 CGCAATACATGACTTTCATTTGTCAAA 59.885 33.333 0.00 0.00 44.81 2.69
2714 2832 6.581919 CGCAATACATGACTTTCATTTGTCAA 59.418 34.615 0.00 0.00 44.81 3.18
2715 2833 6.072783 TCGCAATACATGACTTTCATTTGTCA 60.073 34.615 0.00 0.00 45.56 3.58
2716 2834 6.314018 TCGCAATACATGACTTTCATTTGTC 58.686 36.000 0.00 0.00 34.28 3.18
2717 2835 6.252967 TCGCAATACATGACTTTCATTTGT 57.747 33.333 0.00 0.00 34.28 2.83
2718 2836 7.439490 GTTTCGCAATACATGACTTTCATTTG 58.561 34.615 0.00 0.00 34.28 2.32
2719 2837 6.305399 CGTTTCGCAATACATGACTTTCATTT 59.695 34.615 0.00 0.00 34.28 2.32
2720 2838 5.794945 CGTTTCGCAATACATGACTTTCATT 59.205 36.000 0.00 0.00 34.28 2.57
2721 2839 5.323900 CGTTTCGCAATACATGACTTTCAT 58.676 37.500 0.00 0.00 37.65 2.57
2722 2840 4.377943 CCGTTTCGCAATACATGACTTTCA 60.378 41.667 0.00 0.00 0.00 2.69
2723 2841 4.088648 CCGTTTCGCAATACATGACTTTC 58.911 43.478 0.00 0.00 0.00 2.62
2724 2842 3.749088 TCCGTTTCGCAATACATGACTTT 59.251 39.130 0.00 0.00 0.00 2.66
2725 2843 3.331150 TCCGTTTCGCAATACATGACTT 58.669 40.909 0.00 0.00 0.00 3.01
2726 2844 2.930040 CTCCGTTTCGCAATACATGACT 59.070 45.455 0.00 0.00 0.00 3.41
2727 2845 2.030457 CCTCCGTTTCGCAATACATGAC 59.970 50.000 0.00 0.00 0.00 3.06
2728 2846 2.093921 TCCTCCGTTTCGCAATACATGA 60.094 45.455 0.00 0.00 0.00 3.07
2729 2847 2.276201 TCCTCCGTTTCGCAATACATG 58.724 47.619 0.00 0.00 0.00 3.21
2730 2848 2.684001 TCCTCCGTTTCGCAATACAT 57.316 45.000 0.00 0.00 0.00 2.29
2731 2849 2.289195 ACTTCCTCCGTTTCGCAATACA 60.289 45.455 0.00 0.00 0.00 2.29
2732 2850 2.344025 ACTTCCTCCGTTTCGCAATAC 58.656 47.619 0.00 0.00 0.00 1.89
2733 2851 2.754946 ACTTCCTCCGTTTCGCAATA 57.245 45.000 0.00 0.00 0.00 1.90
2734 2852 2.232941 TCTACTTCCTCCGTTTCGCAAT 59.767 45.455 0.00 0.00 0.00 3.56
2735 2853 1.614903 TCTACTTCCTCCGTTTCGCAA 59.385 47.619 0.00 0.00 0.00 4.85
2736 2854 1.250328 TCTACTTCCTCCGTTTCGCA 58.750 50.000 0.00 0.00 0.00 5.10
2737 2855 2.580966 ATCTACTTCCTCCGTTTCGC 57.419 50.000 0.00 0.00 0.00 4.70
2738 2856 5.496133 TCTTATCTACTTCCTCCGTTTCG 57.504 43.478 0.00 0.00 0.00 3.46
2739 2857 8.719560 AAATTCTTATCTACTTCCTCCGTTTC 57.280 34.615 0.00 0.00 0.00 2.78
2770 2888 9.067986 TGTGGTTGACAATTTACATGTAACATA 57.932 29.630 17.85 4.38 0.00 2.29
2771 2889 7.865385 GTGTGGTTGACAATTTACATGTAACAT 59.135 33.333 17.85 11.51 35.91 2.71
2772 2890 7.148069 TGTGTGGTTGACAATTTACATGTAACA 60.148 33.333 17.85 9.47 35.91 2.41
2773 2891 7.197017 TGTGTGGTTGACAATTTACATGTAAC 58.803 34.615 17.85 6.56 35.91 2.50
2774 2892 7.334844 TGTGTGGTTGACAATTTACATGTAA 57.665 32.000 14.35 14.35 35.91 2.41
2775 2893 6.944234 TGTGTGGTTGACAATTTACATGTA 57.056 33.333 0.08 0.08 35.91 2.29
2776 2894 5.843673 TGTGTGGTTGACAATTTACATGT 57.156 34.783 2.69 2.69 35.91 3.21
2777 2895 6.445475 TGATGTGTGGTTGACAATTTACATG 58.555 36.000 12.16 0.00 35.91 3.21
2778 2896 6.647334 TGATGTGTGGTTGACAATTTACAT 57.353 33.333 8.90 8.90 35.91 2.29
2779 2897 6.456795 TTGATGTGTGGTTGACAATTTACA 57.543 33.333 0.00 0.00 35.91 2.41
2780 2898 7.042791 CCTTTTGATGTGTGGTTGACAATTTAC 60.043 37.037 0.00 0.00 35.91 2.01
2781 2899 6.983307 CCTTTTGATGTGTGGTTGACAATTTA 59.017 34.615 0.00 0.00 35.91 1.40
2782 2900 5.816777 CCTTTTGATGTGTGGTTGACAATTT 59.183 36.000 0.00 0.00 35.91 1.82
2783 2901 5.358922 CCTTTTGATGTGTGGTTGACAATT 58.641 37.500 0.00 0.00 35.91 2.32
2784 2902 4.740334 GCCTTTTGATGTGTGGTTGACAAT 60.740 41.667 0.00 0.00 35.91 2.71
2785 2903 3.430098 GCCTTTTGATGTGTGGTTGACAA 60.430 43.478 0.00 0.00 35.91 3.18
2786 2904 2.100584 GCCTTTTGATGTGTGGTTGACA 59.899 45.455 0.00 0.00 0.00 3.58
2787 2905 2.362077 AGCCTTTTGATGTGTGGTTGAC 59.638 45.455 0.00 0.00 0.00 3.18
2788 2906 2.361757 CAGCCTTTTGATGTGTGGTTGA 59.638 45.455 0.00 0.00 32.00 3.18
2789 2907 2.361757 TCAGCCTTTTGATGTGTGGTTG 59.638 45.455 0.00 0.00 0.00 3.77
2790 2908 2.665165 TCAGCCTTTTGATGTGTGGTT 58.335 42.857 0.00 0.00 0.00 3.67
2791 2909 2.363306 TCAGCCTTTTGATGTGTGGT 57.637 45.000 0.00 0.00 0.00 4.16
2792 2910 3.731652 TTTCAGCCTTTTGATGTGTGG 57.268 42.857 0.00 0.00 0.00 4.17
2793 2911 6.252015 CGAATATTTCAGCCTTTTGATGTGTG 59.748 38.462 0.00 0.00 0.00 3.82
2794 2912 6.071952 ACGAATATTTCAGCCTTTTGATGTGT 60.072 34.615 0.00 0.00 0.00 3.72
2795 2913 6.252015 CACGAATATTTCAGCCTTTTGATGTG 59.748 38.462 0.00 0.00 0.00 3.21
2796 2914 6.324819 CACGAATATTTCAGCCTTTTGATGT 58.675 36.000 0.00 0.00 0.00 3.06
2797 2915 5.230726 GCACGAATATTTCAGCCTTTTGATG 59.769 40.000 0.00 0.00 0.00 3.07
2798 2916 5.105797 TGCACGAATATTTCAGCCTTTTGAT 60.106 36.000 0.00 0.00 31.60 2.57
2799 2917 4.217334 TGCACGAATATTTCAGCCTTTTGA 59.783 37.500 0.00 0.00 31.60 2.69
2800 2918 4.484236 TGCACGAATATTTCAGCCTTTTG 58.516 39.130 0.00 0.00 31.60 2.44
2801 2919 4.782019 TGCACGAATATTTCAGCCTTTT 57.218 36.364 0.00 0.00 31.60 2.27
2802 2920 4.782019 TTGCACGAATATTTCAGCCTTT 57.218 36.364 0.00 0.00 31.60 3.11
2803 2921 4.782019 TTTGCACGAATATTTCAGCCTT 57.218 36.364 0.00 0.00 31.60 4.35
2804 2922 4.218417 AGTTTTGCACGAATATTTCAGCCT 59.782 37.500 0.00 0.00 31.60 4.58
2805 2923 4.485163 AGTTTTGCACGAATATTTCAGCC 58.515 39.130 0.00 0.00 31.60 4.85
2806 2924 6.452244 AAAGTTTTGCACGAATATTTCAGC 57.548 33.333 0.00 0.00 0.00 4.26
2807 2925 8.060020 TCAAAAGTTTTGCACGAATATTTCAG 57.940 30.769 21.21 0.00 0.00 3.02
2808 2926 7.993821 TCAAAAGTTTTGCACGAATATTTCA 57.006 28.000 21.21 0.00 0.00 2.69
2809 2927 8.915654 AGATCAAAAGTTTTGCACGAATATTTC 58.084 29.630 21.21 6.89 0.00 2.17
2810 2928 8.816640 AGATCAAAAGTTTTGCACGAATATTT 57.183 26.923 21.21 3.03 0.00 1.40
2811 2929 8.702438 CAAGATCAAAAGTTTTGCACGAATATT 58.298 29.630 21.21 11.00 0.00 1.28
2812 2930 7.867403 ACAAGATCAAAAGTTTTGCACGAATAT 59.133 29.630 21.21 9.30 0.00 1.28
2813 2931 7.199766 ACAAGATCAAAAGTTTTGCACGAATA 58.800 30.769 21.21 4.99 0.00 1.75
2814 2932 6.042143 ACAAGATCAAAAGTTTTGCACGAAT 58.958 32.000 21.21 10.59 0.00 3.34
2815 2933 5.406649 ACAAGATCAAAAGTTTTGCACGAA 58.593 33.333 21.21 6.33 0.00 3.85
2816 2934 4.992688 ACAAGATCAAAAGTTTTGCACGA 58.007 34.783 21.21 6.68 0.00 4.35
2817 2935 4.207019 GGACAAGATCAAAAGTTTTGCACG 59.793 41.667 21.21 11.04 0.00 5.34
2818 2936 5.351458 AGGACAAGATCAAAAGTTTTGCAC 58.649 37.500 21.21 16.56 0.00 4.57
2819 2937 5.596836 AGGACAAGATCAAAAGTTTTGCA 57.403 34.783 21.21 11.88 0.00 4.08
2820 2938 5.277011 GCAAGGACAAGATCAAAAGTTTTGC 60.277 40.000 21.21 10.04 32.19 3.68
2821 2939 5.811613 TGCAAGGACAAGATCAAAAGTTTTG 59.188 36.000 20.20 20.20 0.00 2.44
2822 2940 5.976458 TGCAAGGACAAGATCAAAAGTTTT 58.024 33.333 0.00 0.00 0.00 2.43
2823 2941 5.596836 TGCAAGGACAAGATCAAAAGTTT 57.403 34.783 0.00 0.00 0.00 2.66
2824 2942 5.596836 TTGCAAGGACAAGATCAAAAGTT 57.403 34.783 0.00 0.00 0.00 2.66
2825 2943 5.596836 TTTGCAAGGACAAGATCAAAAGT 57.403 34.783 0.00 0.00 0.00 2.66
2826 2944 6.510638 GCTTTTTGCAAGGACAAGATCAAAAG 60.511 38.462 0.00 3.52 42.31 2.27
2827 2945 5.294060 GCTTTTTGCAAGGACAAGATCAAAA 59.706 36.000 0.00 0.00 42.31 2.44
2828 2946 4.810491 GCTTTTTGCAAGGACAAGATCAAA 59.190 37.500 0.00 0.00 42.31 2.69
2829 2947 4.099881 AGCTTTTTGCAAGGACAAGATCAA 59.900 37.500 0.00 0.00 45.94 2.57
2830 2948 3.638160 AGCTTTTTGCAAGGACAAGATCA 59.362 39.130 0.00 0.00 45.94 2.92
2831 2949 3.985925 CAGCTTTTTGCAAGGACAAGATC 59.014 43.478 0.00 0.00 45.94 2.75
2832 2950 3.385755 ACAGCTTTTTGCAAGGACAAGAT 59.614 39.130 0.00 0.00 45.94 2.40
2833 2951 2.760092 ACAGCTTTTTGCAAGGACAAGA 59.240 40.909 0.00 0.00 45.94 3.02
2834 2952 3.169355 ACAGCTTTTTGCAAGGACAAG 57.831 42.857 0.00 2.57 45.94 3.16
2835 2953 3.490761 GCTACAGCTTTTTGCAAGGACAA 60.491 43.478 0.00 0.00 45.94 3.18
2836 2954 2.034558 GCTACAGCTTTTTGCAAGGACA 59.965 45.455 0.00 0.00 45.94 4.02
2837 2955 2.034558 TGCTACAGCTTTTTGCAAGGAC 59.965 45.455 0.00 0.00 45.94 3.85
2838 2956 2.034558 GTGCTACAGCTTTTTGCAAGGA 59.965 45.455 0.00 0.00 45.94 3.36
2839 2957 2.397549 GTGCTACAGCTTTTTGCAAGG 58.602 47.619 0.00 0.00 45.94 3.61
2840 2958 2.035066 AGGTGCTACAGCTTTTTGCAAG 59.965 45.455 0.00 0.00 45.94 4.01
2841 2959 2.031120 AGGTGCTACAGCTTTTTGCAA 58.969 42.857 0.00 0.00 45.94 4.08
2842 2960 1.691196 AGGTGCTACAGCTTTTTGCA 58.309 45.000 2.44 0.00 45.94 4.08
2843 2961 2.095212 GGTAGGTGCTACAGCTTTTTGC 60.095 50.000 4.45 0.00 42.44 3.68
2844 2962 2.488153 GGGTAGGTGCTACAGCTTTTTG 59.512 50.000 4.45 0.00 42.44 2.44
2845 2963 2.791655 GGGTAGGTGCTACAGCTTTTT 58.208 47.619 4.45 0.00 42.44 1.94
2846 2964 1.338769 CGGGTAGGTGCTACAGCTTTT 60.339 52.381 4.45 0.00 42.44 2.27
2847 2965 0.249398 CGGGTAGGTGCTACAGCTTT 59.751 55.000 4.45 0.00 42.44 3.51
2848 2966 0.613853 TCGGGTAGGTGCTACAGCTT 60.614 55.000 4.45 0.00 42.44 3.74
2849 2967 1.000019 TCGGGTAGGTGCTACAGCT 60.000 57.895 4.56 4.56 44.66 4.24
2850 2968 1.437986 CTCGGGTAGGTGCTACAGC 59.562 63.158 0.00 0.00 38.58 4.40
2851 2969 1.320344 TGCTCGGGTAGGTGCTACAG 61.320 60.000 0.00 0.00 38.58 2.74
2852 2970 1.304630 TGCTCGGGTAGGTGCTACA 60.305 57.895 0.00 0.00 38.58 2.74
2853 2971 1.141234 GTGCTCGGGTAGGTGCTAC 59.859 63.158 0.00 0.00 36.33 3.58
2854 2972 0.686441 ATGTGCTCGGGTAGGTGCTA 60.686 55.000 0.00 0.00 0.00 3.49
2855 2973 1.961180 GATGTGCTCGGGTAGGTGCT 61.961 60.000 0.00 0.00 0.00 4.40
2856 2974 1.521681 GATGTGCTCGGGTAGGTGC 60.522 63.158 0.00 0.00 0.00 5.01
2857 2975 0.465705 ATGATGTGCTCGGGTAGGTG 59.534 55.000 0.00 0.00 0.00 4.00
2858 2976 0.753262 GATGATGTGCTCGGGTAGGT 59.247 55.000 0.00 0.00 0.00 3.08
2859 2977 0.319040 CGATGATGTGCTCGGGTAGG 60.319 60.000 0.00 0.00 0.00 3.18
2860 2978 0.941463 GCGATGATGTGCTCGGGTAG 60.941 60.000 0.00 0.00 35.48 3.18
2861 2979 1.067416 GCGATGATGTGCTCGGGTA 59.933 57.895 0.00 0.00 35.48 3.69
2862 2980 2.202932 GCGATGATGTGCTCGGGT 60.203 61.111 0.00 0.00 35.48 5.28
2863 2981 2.969238 GGCGATGATGTGCTCGGG 60.969 66.667 0.00 0.00 35.48 5.14
2864 2982 3.333189 CGGCGATGATGTGCTCGG 61.333 66.667 0.00 0.00 35.48 4.63
2865 2983 3.333189 CCGGCGATGATGTGCTCG 61.333 66.667 9.30 0.00 37.92 5.03
2866 2984 2.969238 CCCGGCGATGATGTGCTC 60.969 66.667 9.30 0.00 0.00 4.26
2867 2985 4.552365 CCCCGGCGATGATGTGCT 62.552 66.667 9.30 0.00 0.00 4.40
2868 2986 3.832237 ATCCCCGGCGATGATGTGC 62.832 63.158 9.30 0.00 0.00 4.57
2869 2987 1.962822 CATCCCCGGCGATGATGTG 60.963 63.158 22.25 0.00 41.92 3.21
2870 2988 2.427320 CATCCCCGGCGATGATGT 59.573 61.111 22.25 0.00 41.92 3.06
2871 2989 2.359107 CCATCCCCGGCGATGATG 60.359 66.667 27.16 23.12 41.92 3.07
2872 2990 2.146724 TTCCATCCCCGGCGATGAT 61.147 57.895 27.16 6.91 41.92 2.45
2873 2991 2.766229 TTCCATCCCCGGCGATGA 60.766 61.111 27.16 12.57 41.92 2.92
2874 2992 2.591715 GTTCCATCCCCGGCGATG 60.592 66.667 20.24 20.24 39.54 3.84
2875 2993 3.873812 GGTTCCATCCCCGGCGAT 61.874 66.667 9.30 0.00 0.00 4.58
2878 2996 3.282374 AAGTGGTTCCATCCCCGGC 62.282 63.158 0.00 0.00 0.00 6.13
2879 2997 1.378514 CAAGTGGTTCCATCCCCGG 60.379 63.158 0.00 0.00 0.00 5.73
2880 2998 1.378514 CCAAGTGGTTCCATCCCCG 60.379 63.158 0.00 0.00 0.00 5.73
2881 2999 4.764143 CCAAGTGGTTCCATCCCC 57.236 61.111 0.00 0.00 0.00 4.81
2891 3009 5.130350 CCAACCCATTATAGTACCAAGTGG 58.870 45.833 0.00 0.00 42.17 4.00
2892 3010 4.578928 GCCAACCCATTATAGTACCAAGTG 59.421 45.833 0.00 0.00 0.00 3.16
2893 3011 4.385977 GGCCAACCCATTATAGTACCAAGT 60.386 45.833 0.00 0.00 0.00 3.16
2894 3012 4.142038 GGCCAACCCATTATAGTACCAAG 58.858 47.826 0.00 0.00 0.00 3.61
2895 3013 3.528078 TGGCCAACCCATTATAGTACCAA 59.472 43.478 0.61 0.00 39.18 3.67
2896 3014 3.124066 TGGCCAACCCATTATAGTACCA 58.876 45.455 0.61 0.00 39.18 3.25
2897 3015 3.868619 TGGCCAACCCATTATAGTACC 57.131 47.619 0.61 0.00 39.18 3.34
2910 3028 1.000274 GATTGTGAACTGGTGGCCAAC 60.000 52.381 15.99 15.99 30.80 3.77
2911 3029 1.327303 GATTGTGAACTGGTGGCCAA 58.673 50.000 7.24 0.00 30.80 4.52
2912 3030 0.888736 CGATTGTGAACTGGTGGCCA 60.889 55.000 0.00 0.00 0.00 5.36
2913 3031 1.586154 CCGATTGTGAACTGGTGGCC 61.586 60.000 0.00 0.00 0.00 5.36
2914 3032 1.875963 CCGATTGTGAACTGGTGGC 59.124 57.895 0.00 0.00 0.00 5.01
2915 3033 0.606401 AGCCGATTGTGAACTGGTGG 60.606 55.000 0.00 0.00 0.00 4.61
2916 3034 0.518636 CAGCCGATTGTGAACTGGTG 59.481 55.000 0.00 0.00 0.00 4.17
2917 3035 0.108585 ACAGCCGATTGTGAACTGGT 59.891 50.000 0.00 0.00 32.60 4.00
2918 3036 2.093306 TACAGCCGATTGTGAACTGG 57.907 50.000 2.53 0.00 32.60 4.00
2919 3037 4.651994 GATTTACAGCCGATTGTGAACTG 58.348 43.478 2.53 0.00 30.67 3.16
2920 3038 3.370978 CGATTTACAGCCGATTGTGAACT 59.629 43.478 2.53 0.00 30.67 3.01
2921 3039 3.485216 CCGATTTACAGCCGATTGTGAAC 60.485 47.826 2.53 0.00 30.67 3.18
2922 3040 2.675844 CCGATTTACAGCCGATTGTGAA 59.324 45.455 2.53 1.44 32.16 3.18
2923 3041 2.093921 TCCGATTTACAGCCGATTGTGA 60.094 45.455 2.53 0.00 32.56 3.58
2924 3042 2.030457 GTCCGATTTACAGCCGATTGTG 59.970 50.000 2.53 0.00 32.56 3.33
2925 3043 2.277084 GTCCGATTTACAGCCGATTGT 58.723 47.619 0.00 0.00 35.09 2.71
2926 3044 2.030457 GTGTCCGATTTACAGCCGATTG 59.970 50.000 0.00 0.00 0.00 2.67
2927 3045 2.277084 GTGTCCGATTTACAGCCGATT 58.723 47.619 0.00 0.00 0.00 3.34
2928 3046 1.206132 TGTGTCCGATTTACAGCCGAT 59.794 47.619 0.00 0.00 0.00 4.18
2929 3047 0.604073 TGTGTCCGATTTACAGCCGA 59.396 50.000 0.00 0.00 0.00 5.54
2930 3048 1.393539 CTTGTGTCCGATTTACAGCCG 59.606 52.381 0.00 0.00 0.00 5.52
2931 3049 2.695359 TCTTGTGTCCGATTTACAGCC 58.305 47.619 0.00 0.00 0.00 4.85
2932 3050 5.581085 ACTTATCTTGTGTCCGATTTACAGC 59.419 40.000 0.00 0.00 0.00 4.40
2933 3051 6.036083 CCACTTATCTTGTGTCCGATTTACAG 59.964 42.308 0.00 0.00 33.92 2.74
2934 3052 5.872617 CCACTTATCTTGTGTCCGATTTACA 59.127 40.000 0.00 0.00 33.92 2.41
2935 3053 6.035758 GTCCACTTATCTTGTGTCCGATTTAC 59.964 42.308 0.00 0.00 33.92 2.01
2936 3054 6.103997 GTCCACTTATCTTGTGTCCGATTTA 58.896 40.000 0.00 0.00 33.92 1.40
2937 3055 4.935808 GTCCACTTATCTTGTGTCCGATTT 59.064 41.667 0.00 0.00 33.92 2.17
2938 3056 4.020573 TGTCCACTTATCTTGTGTCCGATT 60.021 41.667 0.00 0.00 33.92 3.34
2939 3057 3.513912 TGTCCACTTATCTTGTGTCCGAT 59.486 43.478 0.00 0.00 33.92 4.18
2940 3058 2.894765 TGTCCACTTATCTTGTGTCCGA 59.105 45.455 0.00 0.00 33.92 4.55
2941 3059 3.313012 TGTCCACTTATCTTGTGTCCG 57.687 47.619 0.00 0.00 33.92 4.79
2942 3060 3.865745 CGATGTCCACTTATCTTGTGTCC 59.134 47.826 0.00 0.00 33.92 4.02
2943 3061 3.865745 CCGATGTCCACTTATCTTGTGTC 59.134 47.826 0.00 0.00 33.92 3.67
2944 3062 3.513912 TCCGATGTCCACTTATCTTGTGT 59.486 43.478 0.00 0.00 33.92 3.72
2945 3063 3.865745 GTCCGATGTCCACTTATCTTGTG 59.134 47.826 0.00 0.00 35.39 3.33
2946 3064 3.769844 AGTCCGATGTCCACTTATCTTGT 59.230 43.478 0.00 0.00 0.00 3.16
2947 3065 4.115516 CAGTCCGATGTCCACTTATCTTG 58.884 47.826 0.00 0.00 0.00 3.02
2948 3066 3.430929 GCAGTCCGATGTCCACTTATCTT 60.431 47.826 0.00 0.00 0.00 2.40
2949 3067 2.101582 GCAGTCCGATGTCCACTTATCT 59.898 50.000 0.00 0.00 0.00 1.98
2950 3068 2.474816 GCAGTCCGATGTCCACTTATC 58.525 52.381 0.00 0.00 0.00 1.75
2951 3069 1.202417 CGCAGTCCGATGTCCACTTAT 60.202 52.381 0.00 0.00 40.02 1.73
2952 3070 0.172578 CGCAGTCCGATGTCCACTTA 59.827 55.000 0.00 0.00 40.02 2.24
2953 3071 1.079819 CGCAGTCCGATGTCCACTT 60.080 57.895 0.00 0.00 40.02 3.16
2954 3072 2.573869 CGCAGTCCGATGTCCACT 59.426 61.111 0.00 0.00 40.02 4.00
2955 3073 3.188786 GCGCAGTCCGATGTCCAC 61.189 66.667 0.30 0.00 40.02 4.02
2956 3074 4.451150 GGCGCAGTCCGATGTCCA 62.451 66.667 10.83 0.00 40.02 4.02
2972 3090 3.523374 AAAGGGGAGGCGGTTTGGG 62.523 63.158 0.00 0.00 0.00 4.12
2973 3091 2.117423 AAAGGGGAGGCGGTTTGG 59.883 61.111 0.00 0.00 0.00 3.28
2974 3092 1.228429 TCAAAGGGGAGGCGGTTTG 60.228 57.895 0.00 0.00 0.00 2.93
2975 3093 1.228459 GTCAAAGGGGAGGCGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
2976 3094 2.434774 GTCAAAGGGGAGGCGGTT 59.565 61.111 0.00 0.00 0.00 4.44
2977 3095 3.647771 GGTCAAAGGGGAGGCGGT 61.648 66.667 0.00 0.00 0.00 5.68
2978 3096 3.204467 TTGGTCAAAGGGGAGGCGG 62.204 63.158 0.00 0.00 0.00 6.13
2979 3097 1.971695 GTTGGTCAAAGGGGAGGCG 60.972 63.158 0.00 0.00 0.00 5.52
2980 3098 0.895559 CTGTTGGTCAAAGGGGAGGC 60.896 60.000 0.00 0.00 0.00 4.70
2981 3099 0.771127 TCTGTTGGTCAAAGGGGAGG 59.229 55.000 0.00 0.00 0.00 4.30
2982 3100 2.887151 ATCTGTTGGTCAAAGGGGAG 57.113 50.000 0.00 0.00 0.00 4.30
2983 3101 2.027561 CGTATCTGTTGGTCAAAGGGGA 60.028 50.000 0.00 0.00 0.00 4.81
2984 3102 2.027561 TCGTATCTGTTGGTCAAAGGGG 60.028 50.000 0.00 0.00 0.00 4.79
2985 3103 3.328382 TCGTATCTGTTGGTCAAAGGG 57.672 47.619 0.00 0.00 0.00 3.95
2986 3104 3.684788 CCTTCGTATCTGTTGGTCAAAGG 59.315 47.826 0.00 0.00 0.00 3.11
2987 3105 3.125316 GCCTTCGTATCTGTTGGTCAAAG 59.875 47.826 0.00 0.00 0.00 2.77
2988 3106 3.071479 GCCTTCGTATCTGTTGGTCAAA 58.929 45.455 0.00 0.00 0.00 2.69
2989 3107 2.695359 GCCTTCGTATCTGTTGGTCAA 58.305 47.619 0.00 0.00 0.00 3.18
2990 3108 1.403647 CGCCTTCGTATCTGTTGGTCA 60.404 52.381 0.00 0.00 0.00 4.02
2991 3109 1.278238 CGCCTTCGTATCTGTTGGTC 58.722 55.000 0.00 0.00 0.00 4.02
2992 3110 0.108329 CCGCCTTCGTATCTGTTGGT 60.108 55.000 0.00 0.00 0.00 3.67
2993 3111 1.429148 GCCGCCTTCGTATCTGTTGG 61.429 60.000 0.00 0.00 0.00 3.77
2994 3112 0.460284 AGCCGCCTTCGTATCTGTTG 60.460 55.000 0.00 0.00 0.00 3.33
2995 3113 1.108776 TAGCCGCCTTCGTATCTGTT 58.891 50.000 0.00 0.00 0.00 3.16
2996 3114 0.384669 GTAGCCGCCTTCGTATCTGT 59.615 55.000 0.00 0.00 0.00 3.41
2997 3115 0.660595 CGTAGCCGCCTTCGTATCTG 60.661 60.000 0.00 0.00 0.00 2.90
2998 3116 0.816825 TCGTAGCCGCCTTCGTATCT 60.817 55.000 0.00 0.00 34.09 1.98
2999 3117 0.029834 TTCGTAGCCGCCTTCGTATC 59.970 55.000 0.00 0.00 34.09 2.24
3000 3118 0.030369 CTTCGTAGCCGCCTTCGTAT 59.970 55.000 0.00 0.00 34.09 3.06
3001 3119 1.026182 TCTTCGTAGCCGCCTTCGTA 61.026 55.000 0.00 0.00 34.09 3.43
3002 3120 1.870055 TTCTTCGTAGCCGCCTTCGT 61.870 55.000 0.00 0.00 34.09 3.85
3003 3121 0.527817 ATTCTTCGTAGCCGCCTTCG 60.528 55.000 0.00 0.00 33.75 3.79
3004 3122 0.931005 CATTCTTCGTAGCCGCCTTC 59.069 55.000 0.00 0.00 0.00 3.46
3005 3123 0.249398 ACATTCTTCGTAGCCGCCTT 59.751 50.000 0.00 0.00 0.00 4.35
3006 3124 0.179108 GACATTCTTCGTAGCCGCCT 60.179 55.000 0.00 0.00 0.00 5.52
3007 3125 1.480219 CGACATTCTTCGTAGCCGCC 61.480 60.000 0.00 0.00 34.16 6.13
3008 3126 1.480219 CCGACATTCTTCGTAGCCGC 61.480 60.000 0.00 0.00 37.29 6.53
3009 3127 1.480219 GCCGACATTCTTCGTAGCCG 61.480 60.000 0.00 0.00 37.29 5.52
3010 3128 1.480219 CGCCGACATTCTTCGTAGCC 61.480 60.000 0.00 0.00 37.29 3.93
3011 3129 1.917921 CGCCGACATTCTTCGTAGC 59.082 57.895 0.00 0.00 37.29 3.58
3012 3130 0.525668 AGCGCCGACATTCTTCGTAG 60.526 55.000 2.29 0.00 37.29 3.51
3013 3131 0.108992 AAGCGCCGACATTCTTCGTA 60.109 50.000 2.29 0.00 37.29 3.43
3014 3132 1.352156 GAAGCGCCGACATTCTTCGT 61.352 55.000 2.29 0.00 37.29 3.85
3015 3133 1.345176 GAAGCGCCGACATTCTTCG 59.655 57.895 2.29 0.00 38.80 3.79
3016 3134 0.796312 TTGAAGCGCCGACATTCTTC 59.204 50.000 2.29 0.00 36.42 2.87
3017 3135 1.069227 GTTTGAAGCGCCGACATTCTT 60.069 47.619 2.29 0.00 0.00 2.52
3018 3136 0.517316 GTTTGAAGCGCCGACATTCT 59.483 50.000 2.29 0.00 0.00 2.40
3019 3137 3.001576 GTTTGAAGCGCCGACATTC 57.998 52.632 2.29 0.71 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.