Multiple sequence alignment - TraesCS2A01G256100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G256100 chr2A 100.000 6457 0 0 1 6457 392723405 392729861 0.000000e+00 11924.0
1 TraesCS2A01G256100 chr2D 93.583 3226 99 51 2677 5858 325363069 325359908 0.000000e+00 4711.0
2 TraesCS2A01G256100 chr2D 89.860 2495 103 56 262 2679 325365596 325363175 0.000000e+00 3068.0
3 TraesCS2A01G256100 chr2D 88.276 145 10 5 71 210 325365759 325365617 4.000000e-37 167.0
4 TraesCS2A01G256100 chr2B 95.320 2372 61 26 3495 5858 394361954 394359625 0.000000e+00 3720.0
5 TraesCS2A01G256100 chr2B 90.604 1937 72 45 381 2286 394365006 394363149 0.000000e+00 2468.0
6 TraesCS2A01G256100 chr2B 85.676 1117 27 40 2296 3357 394363108 394362070 0.000000e+00 1053.0
7 TraesCS2A01G256100 chr2B 81.215 181 26 7 5959 6135 109330857 109331033 8.730000e-29 139.0
8 TraesCS2A01G256100 chr2B 93.478 92 2 2 104 192 394365574 394365484 4.060000e-27 134.0
9 TraesCS2A01G256100 chr2B 89.286 56 5 1 5961 6015 779309040 779308985 1.160000e-07 69.4
10 TraesCS2A01G256100 chr6B 91.618 346 21 4 5973 6318 132949625 132949962 7.580000e-129 472.0
11 TraesCS2A01G256100 chr6B 82.464 211 37 0 1156 1366 574460723 574460933 1.110000e-42 185.0
12 TraesCS2A01G256100 chr6B 76.610 295 67 2 3544 3837 61224420 61224713 1.860000e-35 161.0
13 TraesCS2A01G256100 chr3A 93.706 286 16 2 5973 6257 159996537 159996821 1.660000e-115 427.0
14 TraesCS2A01G256100 chr3A 95.192 208 3 3 6256 6457 159997059 159997265 8.080000e-84 322.0
15 TraesCS2A01G256100 chr5B 83.878 459 54 10 6009 6457 498834209 498833761 2.780000e-113 420.0
16 TraesCS2A01G256100 chr6A 83.412 211 35 0 1156 1366 526115974 526116184 5.110000e-46 196.0
17 TraesCS2A01G256100 chr6A 77.365 296 63 4 3544 3837 33584217 33584510 8.610000e-39 172.0
18 TraesCS2A01G256100 chr6A 78.210 257 56 0 3544 3800 33541690 33541434 1.440000e-36 165.0
19 TraesCS2A01G256100 chr6D 82.464 211 37 0 1156 1366 384218667 384218877 1.110000e-42 185.0
20 TraesCS2A01G256100 chr6D 78.327 263 57 0 3538 3800 28999646 28999908 3.100000e-38 171.0
21 TraesCS2A01G256100 chr6D 78.138 247 52 2 3544 3789 28941829 28941584 8.670000e-34 156.0
22 TraesCS2A01G256100 chr7B 78.889 180 32 5 5958 6135 66969847 66970022 4.090000e-22 117.0
23 TraesCS2A01G256100 chr3B 91.228 57 3 2 5972 6026 42602669 42602613 6.940000e-10 76.8
24 TraesCS2A01G256100 chr3B 90.909 55 5 0 5962 6016 130471079 130471133 2.500000e-09 75.0
25 TraesCS2A01G256100 chr1A 95.556 45 2 0 5971 6015 137874078 137874122 8.980000e-09 73.1
26 TraesCS2A01G256100 chr4D 90.566 53 4 1 5964 6015 51993122 51993174 1.160000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G256100 chr2A 392723405 392729861 6456 False 11924.000000 11924 100.0000 1 6457 1 chr2A.!!$F1 6456
1 TraesCS2A01G256100 chr2D 325359908 325365759 5851 True 2648.666667 4711 90.5730 71 5858 3 chr2D.!!$R1 5787
2 TraesCS2A01G256100 chr2B 394359625 394365574 5949 True 1843.750000 3720 91.2695 104 5858 4 chr2B.!!$R2 5754
3 TraesCS2A01G256100 chr3A 159996537 159997265 728 False 374.500000 427 94.4490 5973 6457 2 chr3A.!!$F1 484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 222 0.104304 CCCGACTGAATCTTACCCCG 59.896 60.0 0.00 0.00 0.00 5.73 F
993 1305 0.112606 ATCTAGCCGGCTGGTAGCTA 59.887 55.0 38.98 19.88 43.35 3.32 F
1484 1813 0.588233 CGTACGTACGCTGCACCTAG 60.588 60.0 32.36 5.42 43.14 3.02 F
1680 2010 0.724453 GCCGTACGTGCATGTGTTTG 60.724 55.0 21.92 8.35 0.00 2.93 F
2933 3481 0.523072 ACGCAGTGATGAAATGGTGC 59.477 50.0 0.00 0.00 42.51 5.01 F
3524 4115 0.038526 GACTGACGGACGGATGTTGT 60.039 55.0 0.00 0.00 0.00 3.32 F
4565 5156 0.173708 GGCTCTTCTACACGGACCTG 59.826 60.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1702 0.460987 AGCGAGGAAGGAAATCTGCG 60.461 55.0 0.00 0.0 0.00 5.18 R
2566 2972 0.043334 AGAGACCTACCTGCCCACAT 59.957 55.0 0.00 0.0 0.00 3.21 R
2579 2985 0.173708 CGGCTGGACTACAAGAGACC 59.826 60.0 0.00 0.0 40.14 3.85 R
3505 4096 0.038526 ACAACATCCGTCCGTCAGTC 60.039 55.0 0.00 0.0 0.00 3.51 R
4602 5193 1.123077 TGGATGGACGGGATCTTCTG 58.877 55.0 0.00 0.0 0.00 3.02 R
4926 5517 1.208642 TGCATCGTCATCGTCATCGC 61.209 55.0 0.00 0.0 38.33 4.58 R
5969 6575 0.037605 GCGCGGGTATGGCTAGTTAT 60.038 55.0 8.83 0.0 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.793259 AAAAAGAGGATATGTCAGTGTTCTAAA 57.207 29.630 0.00 0.00 0.00 1.85
37 38 9.793259 AAAAGAGGATATGTCAGTGTTCTAAAA 57.207 29.630 0.00 0.00 0.00 1.52
38 39 9.442047 AAAGAGGATATGTCAGTGTTCTAAAAG 57.558 33.333 0.00 0.00 0.00 2.27
39 40 7.560368 AGAGGATATGTCAGTGTTCTAAAAGG 58.440 38.462 0.00 0.00 0.00 3.11
40 41 7.400339 AGAGGATATGTCAGTGTTCTAAAAGGA 59.600 37.037 0.00 0.00 0.00 3.36
41 42 8.095452 AGGATATGTCAGTGTTCTAAAAGGAT 57.905 34.615 0.00 0.00 0.00 3.24
42 43 9.213777 AGGATATGTCAGTGTTCTAAAAGGATA 57.786 33.333 0.00 0.00 0.00 2.59
43 44 9.262358 GGATATGTCAGTGTTCTAAAAGGATAC 57.738 37.037 0.00 0.00 0.00 2.24
90 91 1.524621 CCTGTATGGCGCTTCCTGG 60.525 63.158 7.64 2.98 35.26 4.45
97 98 1.143401 GGCGCTTCCTGGGTACTAC 59.857 63.158 7.64 0.00 0.00 2.73
98 99 1.226888 GCGCTTCCTGGGTACTACG 60.227 63.158 0.00 0.00 0.00 3.51
102 105 1.134877 GCTTCCTGGGTACTACGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
124 127 5.596836 CTAGCTGAGGAAGAAGAGATTGT 57.403 43.478 0.00 0.00 0.00 2.71
126 129 7.106439 CTAGCTGAGGAAGAAGAGATTGTAA 57.894 40.000 0.00 0.00 0.00 2.41
127 130 5.976458 AGCTGAGGAAGAAGAGATTGTAAG 58.024 41.667 0.00 0.00 0.00 2.34
128 131 5.719085 AGCTGAGGAAGAAGAGATTGTAAGA 59.281 40.000 0.00 0.00 0.00 2.10
129 132 6.042143 GCTGAGGAAGAAGAGATTGTAAGAG 58.958 44.000 0.00 0.00 0.00 2.85
130 133 5.971763 TGAGGAAGAAGAGATTGTAAGAGC 58.028 41.667 0.00 0.00 0.00 4.09
131 134 5.481824 TGAGGAAGAAGAGATTGTAAGAGCA 59.518 40.000 0.00 0.00 0.00 4.26
134 139 7.725251 AGGAAGAAGAGATTGTAAGAGCATAG 58.275 38.462 0.00 0.00 0.00 2.23
137 142 9.677567 GAAGAAGAGATTGTAAGAGCATAGTAG 57.322 37.037 0.00 0.00 0.00 2.57
192 197 4.780021 AGATAAAGGCCAGACAGAAGAGAA 59.220 41.667 5.01 0.00 0.00 2.87
196 201 2.147150 GGCCAGACAGAAGAGAAACAC 58.853 52.381 0.00 0.00 0.00 3.32
200 205 1.700186 AGACAGAAGAGAAACACCCCC 59.300 52.381 0.00 0.00 0.00 5.40
201 206 0.396811 ACAGAAGAGAAACACCCCCG 59.603 55.000 0.00 0.00 0.00 5.73
203 208 0.685660 AGAAGAGAAACACCCCCGAC 59.314 55.000 0.00 0.00 0.00 4.79
204 209 0.685660 GAAGAGAAACACCCCCGACT 59.314 55.000 0.00 0.00 0.00 4.18
205 210 0.396811 AAGAGAAACACCCCCGACTG 59.603 55.000 0.00 0.00 0.00 3.51
207 212 0.395312 GAGAAACACCCCCGACTGAA 59.605 55.000 0.00 0.00 0.00 3.02
209 214 1.003233 AGAAACACCCCCGACTGAATC 59.997 52.381 0.00 0.00 0.00 2.52
210 215 1.003233 GAAACACCCCCGACTGAATCT 59.997 52.381 0.00 0.00 0.00 2.40
214 219 1.134491 CACCCCCGACTGAATCTTACC 60.134 57.143 0.00 0.00 0.00 2.85
217 222 0.104304 CCCGACTGAATCTTACCCCG 59.896 60.000 0.00 0.00 0.00 5.73
219 224 1.067212 CCGACTGAATCTTACCCCGAG 59.933 57.143 0.00 0.00 0.00 4.63
220 225 1.067212 CGACTGAATCTTACCCCGAGG 59.933 57.143 0.00 0.00 40.04 4.63
222 227 2.101082 GACTGAATCTTACCCCGAGGTC 59.899 54.545 0.00 0.00 46.45 3.85
223 228 2.108168 CTGAATCTTACCCCGAGGTCA 58.892 52.381 0.00 0.00 46.45 4.02
224 229 2.500098 CTGAATCTTACCCCGAGGTCAA 59.500 50.000 0.00 0.00 46.45 3.18
225 230 3.112263 TGAATCTTACCCCGAGGTCAAT 58.888 45.455 0.00 0.00 46.45 2.57
226 231 3.134081 TGAATCTTACCCCGAGGTCAATC 59.866 47.826 0.00 0.00 46.45 2.67
228 233 2.108168 TCTTACCCCGAGGTCAATCAG 58.892 52.381 0.00 0.00 46.45 2.90
229 234 1.831736 CTTACCCCGAGGTCAATCAGT 59.168 52.381 0.00 0.00 46.45 3.41
230 235 1.191535 TACCCCGAGGTCAATCAGTG 58.808 55.000 0.00 0.00 46.45 3.66
231 236 1.221840 CCCCGAGGTCAATCAGTGG 59.778 63.158 0.00 0.00 0.00 4.00
234 239 1.202580 CCCGAGGTCAATCAGTGGATC 60.203 57.143 0.00 0.00 31.88 3.36
235 240 1.202580 CCGAGGTCAATCAGTGGATCC 60.203 57.143 4.20 4.20 31.88 3.36
236 241 1.536922 CGAGGTCAATCAGTGGATCCG 60.537 57.143 7.39 0.00 31.88 4.18
237 242 1.482593 GAGGTCAATCAGTGGATCCGT 59.517 52.381 7.39 0.00 31.88 4.69
238 243 1.482593 AGGTCAATCAGTGGATCCGTC 59.517 52.381 7.39 2.79 31.88 4.79
239 244 1.207089 GGTCAATCAGTGGATCCGTCA 59.793 52.381 7.39 0.00 31.88 4.35
240 245 2.544685 GTCAATCAGTGGATCCGTCAG 58.455 52.381 7.39 0.04 31.88 3.51
241 246 2.166459 GTCAATCAGTGGATCCGTCAGA 59.834 50.000 7.39 5.83 31.88 3.27
242 247 2.831526 TCAATCAGTGGATCCGTCAGAA 59.168 45.455 7.39 0.00 31.88 3.02
244 249 4.080919 TCAATCAGTGGATCCGTCAGAAAT 60.081 41.667 7.39 0.00 31.88 2.17
245 250 3.251479 TCAGTGGATCCGTCAGAAATG 57.749 47.619 7.39 0.00 0.00 2.32
246 251 2.831526 TCAGTGGATCCGTCAGAAATGA 59.168 45.455 7.39 0.07 0.00 2.57
248 253 3.620374 CAGTGGATCCGTCAGAAATGAAG 59.380 47.826 7.39 0.00 0.00 3.02
249 254 2.939103 GTGGATCCGTCAGAAATGAAGG 59.061 50.000 7.39 4.11 38.52 3.46
256 392 4.761910 CGTCAGAAATGAAGGACGTATG 57.238 45.455 0.00 0.00 45.73 2.39
257 393 3.000322 CGTCAGAAATGAAGGACGTATGC 60.000 47.826 0.00 0.00 45.73 3.14
258 394 3.000322 GTCAGAAATGAAGGACGTATGCG 60.000 47.826 0.19 0.19 44.93 4.73
302 441 1.812214 GATCGACGATCTTGCACCGC 61.812 60.000 26.72 1.43 36.27 5.68
352 496 1.129326 AGCGTTTTTCTCACTCGACG 58.871 50.000 0.00 0.00 0.00 5.12
397 691 2.034305 GTCATGCATCTGAATCCAAGGC 59.966 50.000 0.00 0.00 0.00 4.35
429 723 2.161609 GTGGTTGAATTCGTGGATCCAC 59.838 50.000 31.59 31.59 43.01 4.02
442 736 4.713946 TCCACGCTGAAATGGACC 57.286 55.556 0.00 0.00 40.17 4.46
447 741 4.520846 GCTGAAATGGACCGCGCG 62.521 66.667 25.67 25.67 0.00 6.86
509 804 5.647589 AGCAACAGCTACATCAATGAATTG 58.352 37.500 0.00 0.00 36.70 2.32
579 887 1.353022 AGGGTGATGGGCGAAAAGTAA 59.647 47.619 0.00 0.00 0.00 2.24
580 888 1.743394 GGGTGATGGGCGAAAAGTAAG 59.257 52.381 0.00 0.00 0.00 2.34
581 889 1.132453 GGTGATGGGCGAAAAGTAAGC 59.868 52.381 0.00 0.00 0.00 3.09
586 894 2.097728 GCGAAAAGTAAGCCGCGG 59.902 61.111 24.05 24.05 38.27 6.46
587 895 2.782615 CGAAAAGTAAGCCGCGGG 59.217 61.111 29.38 8.95 0.00 6.13
683 992 2.464459 GGGTCGCATAGCACAGCAC 61.464 63.158 0.00 0.00 0.00 4.40
696 1005 2.416296 GCACAGCACCACGTATGTACTA 60.416 50.000 0.00 0.00 0.00 1.82
698 1007 3.087031 ACAGCACCACGTATGTACTACT 58.913 45.455 0.00 0.00 0.00 2.57
700 1009 2.686915 AGCACCACGTATGTACTACTCC 59.313 50.000 0.00 0.00 0.00 3.85
701 1010 2.424601 GCACCACGTATGTACTACTCCA 59.575 50.000 0.00 0.00 0.00 3.86
702 1011 3.733077 GCACCACGTATGTACTACTCCAC 60.733 52.174 0.00 0.00 0.00 4.02
703 1012 3.441222 CACCACGTATGTACTACTCCACA 59.559 47.826 0.00 0.00 0.00 4.17
704 1013 4.097437 CACCACGTATGTACTACTCCACAT 59.903 45.833 0.00 0.00 38.81 3.21
705 1014 5.297527 CACCACGTATGTACTACTCCACATA 59.702 44.000 0.00 0.00 36.74 2.29
706 1015 5.887598 ACCACGTATGTACTACTCCACATAA 59.112 40.000 0.00 0.00 38.87 1.90
707 1016 6.039047 ACCACGTATGTACTACTCCACATAAG 59.961 42.308 0.00 6.24 38.87 1.73
708 1017 6.039047 CCACGTATGTACTACTCCACATAAGT 59.961 42.308 7.26 7.26 45.19 2.24
709 1018 7.227314 CCACGTATGTACTACTCCACATAAGTA 59.773 40.741 11.20 0.00 43.66 2.24
710 1019 8.066595 CACGTATGTACTACTCCACATAAGTAC 58.933 40.741 11.20 4.87 43.66 2.73
711 1020 7.989741 ACGTATGTACTACTCCACATAAGTACT 59.010 37.037 10.26 0.00 43.67 2.73
761 1070 2.120232 GTTCACATACTCCAGCGATCG 58.880 52.381 11.69 11.69 0.00 3.69
762 1071 1.675552 TCACATACTCCAGCGATCGA 58.324 50.000 21.57 0.00 0.00 3.59
763 1072 1.333931 TCACATACTCCAGCGATCGAC 59.666 52.381 21.57 10.46 0.00 4.20
764 1073 1.065551 CACATACTCCAGCGATCGACA 59.934 52.381 21.57 0.00 0.00 4.35
765 1074 1.749063 ACATACTCCAGCGATCGACAA 59.251 47.619 21.57 0.00 0.00 3.18
766 1075 2.223595 ACATACTCCAGCGATCGACAAG 60.224 50.000 21.57 12.04 0.00 3.16
798 1110 1.146358 GCGCGCTAACTCTAACCAGG 61.146 60.000 26.67 0.00 0.00 4.45
806 1118 1.501582 ACTCTAACCAGGGAGATGCC 58.498 55.000 0.00 0.00 34.11 4.40
807 1119 1.273838 ACTCTAACCAGGGAGATGCCA 60.274 52.381 0.00 0.00 38.95 4.92
922 1234 1.065491 TGGCATGTTATTCCACGAGCT 60.065 47.619 0.00 0.00 0.00 4.09
925 1237 3.815401 GGCATGTTATTCCACGAGCTAAT 59.185 43.478 0.00 0.00 0.00 1.73
926 1238 4.275936 GGCATGTTATTCCACGAGCTAATT 59.724 41.667 0.00 0.00 0.00 1.40
927 1239 5.468746 GGCATGTTATTCCACGAGCTAATTA 59.531 40.000 0.00 0.00 0.00 1.40
928 1240 6.347725 GGCATGTTATTCCACGAGCTAATTAG 60.348 42.308 8.20 8.20 0.00 1.73
991 1303 1.005630 CATCTAGCCGGCTGGTAGC 60.006 63.158 38.98 3.94 43.35 3.58
992 1304 1.152440 ATCTAGCCGGCTGGTAGCT 60.152 57.895 38.98 17.31 43.35 3.32
993 1305 0.112606 ATCTAGCCGGCTGGTAGCTA 59.887 55.000 38.98 19.88 43.35 3.32
994 1306 4.175988 TAGCCGGCTGGTAGCTAG 57.824 61.111 38.98 0.00 41.99 3.42
1428 1757 9.765795 CTTCCTCTTTCTTCTTTCTTTGTACTA 57.234 33.333 0.00 0.00 0.00 1.82
1430 1759 8.925338 TCCTCTTTCTTCTTTCTTTGTACTAGT 58.075 33.333 0.00 0.00 0.00 2.57
1482 1811 2.177531 CGTACGTACGCTGCACCT 59.822 61.111 32.36 0.00 43.14 4.00
1483 1812 1.425031 CGTACGTACGCTGCACCTA 59.575 57.895 32.36 0.00 43.14 3.08
1484 1813 0.588233 CGTACGTACGCTGCACCTAG 60.588 60.000 32.36 5.42 43.14 3.02
1545 1874 4.220693 TCTGCATGTACCAACAGCTTAT 57.779 40.909 0.00 0.00 39.49 1.73
1628 1958 6.144241 GTCTCTTGTCGTCTCTTCCTAAAAAC 59.856 42.308 0.00 0.00 0.00 2.43
1656 1986 3.374042 TTTCCAAACTCAAGTGGGTCA 57.626 42.857 0.00 0.00 35.46 4.02
1666 1996 1.412453 AAGTGGGTCAAGTGGCCGTA 61.412 55.000 0.00 0.00 41.79 4.02
1668 1998 2.433664 GGGTCAAGTGGCCGTACG 60.434 66.667 8.69 8.69 41.79 3.67
1669 1999 2.341176 GGTCAAGTGGCCGTACGT 59.659 61.111 15.21 0.00 0.00 3.57
1670 2000 2.025418 GGTCAAGTGGCCGTACGTG 61.025 63.158 15.21 6.95 0.00 4.49
1671 2001 2.356553 TCAAGTGGCCGTACGTGC 60.357 61.111 15.21 16.33 31.41 5.34
1672 2002 2.663520 CAAGTGGCCGTACGTGCA 60.664 61.111 23.71 11.69 0.00 4.57
1673 2003 2.032634 CAAGTGGCCGTACGTGCAT 61.033 57.895 23.71 10.99 0.00 3.96
1674 2004 2.032634 AAGTGGCCGTACGTGCATG 61.033 57.895 23.71 3.82 0.00 4.06
1675 2005 2.725203 AAGTGGCCGTACGTGCATGT 62.725 55.000 23.71 17.19 0.00 3.21
1676 2006 2.740440 TGGCCGTACGTGCATGTG 60.740 61.111 21.92 6.16 0.00 3.21
1677 2007 2.740826 GGCCGTACGTGCATGTGT 60.741 61.111 21.92 8.09 0.00 3.72
1678 2008 2.322081 GGCCGTACGTGCATGTGTT 61.322 57.895 21.92 0.00 0.00 3.32
1679 2009 1.572447 GCCGTACGTGCATGTGTTT 59.428 52.632 21.92 0.00 0.00 2.83
1680 2010 0.724453 GCCGTACGTGCATGTGTTTG 60.724 55.000 21.92 8.35 0.00 2.93
1682 2012 1.003331 CCGTACGTGCATGTGTTTGTT 60.003 47.619 21.92 0.00 0.00 2.83
1687 2017 2.665537 ACGTGCATGTGTTTGTTTGTTG 59.334 40.909 11.65 0.00 0.00 3.33
1688 2018 2.665537 CGTGCATGTGTTTGTTTGTTGT 59.334 40.909 0.00 0.00 0.00 3.32
1691 2021 5.164051 CGTGCATGTGTTTGTTTGTTGTTTA 60.164 36.000 0.00 0.00 0.00 2.01
1695 2025 8.383619 TGCATGTGTTTGTTTGTTGTTTATTAC 58.616 29.630 0.00 0.00 0.00 1.89
1697 2027 9.898806 CATGTGTTTGTTTGTTGTTTATTACTG 57.101 29.630 0.00 0.00 0.00 2.74
1698 2028 9.646427 ATGTGTTTGTTTGTTGTTTATTACTGT 57.354 25.926 0.00 0.00 0.00 3.55
1733 2065 7.991084 TTAACACAGAGCTACTACTAGTTGA 57.009 36.000 11.43 0.00 0.00 3.18
1736 2068 8.754991 AACACAGAGCTACTACTAGTTGATAT 57.245 34.615 11.43 0.00 0.00 1.63
1756 2088 8.628882 TGATATTGTAGTTAGTGATCAACGTG 57.371 34.615 0.00 0.00 0.00 4.49
1773 2108 7.987268 TCAACGTGATACTTCTCATATTGTC 57.013 36.000 0.00 0.00 30.67 3.18
1831 2166 1.343789 TGCATGGGAATGTTTGTGGTG 59.656 47.619 0.00 0.00 0.00 4.17
1855 2207 8.066595 GTGATTTTAGTTAGCATGCATGAGTAG 58.933 37.037 30.64 3.47 0.00 2.57
1879 2231 4.890158 ACCAAAGGCCCAAATTAAAGAG 57.110 40.909 0.00 0.00 0.00 2.85
1881 2233 3.599343 CAAAGGCCCAAATTAAAGAGGC 58.401 45.455 0.00 0.00 43.09 4.70
2290 2642 5.135508 TCTTTCAGTCTACCTTGTACAGC 57.864 43.478 0.00 0.00 0.00 4.40
2292 2644 5.246203 TCTTTCAGTCTACCTTGTACAGCAT 59.754 40.000 0.00 0.00 0.00 3.79
2293 2645 6.436218 TCTTTCAGTCTACCTTGTACAGCATA 59.564 38.462 0.00 0.00 0.00 3.14
2294 2646 5.578005 TCAGTCTACCTTGTACAGCATAC 57.422 43.478 0.00 0.00 0.00 2.39
2388 2775 3.124636 GCTATGGGTAACAAGTGTGAACG 59.875 47.826 0.00 0.00 39.74 3.95
2429 2830 1.140407 GAGTGTAGCGTGGCGTGATC 61.140 60.000 0.00 0.00 0.00 2.92
2485 2888 4.996062 AAAGCAAAAATCATTTGAGGCG 57.004 36.364 5.17 0.00 0.00 5.52
2558 2964 3.502123 TTCTTTTTCCGATGGGTCAGT 57.498 42.857 0.00 0.00 33.83 3.41
2563 2969 1.634960 TTCCGATGGGTCAGTGTGTA 58.365 50.000 0.00 0.00 33.83 2.90
2564 2970 1.182667 TCCGATGGGTCAGTGTGTAG 58.817 55.000 0.00 0.00 33.83 2.74
2565 2971 0.895530 CCGATGGGTCAGTGTGTAGT 59.104 55.000 0.00 0.00 0.00 2.73
2566 2972 2.097036 CCGATGGGTCAGTGTGTAGTA 58.903 52.381 0.00 0.00 0.00 1.82
2567 2973 2.693591 CCGATGGGTCAGTGTGTAGTAT 59.306 50.000 0.00 0.00 0.00 2.12
2568 2974 3.490933 CCGATGGGTCAGTGTGTAGTATG 60.491 52.174 0.00 0.00 0.00 2.39
2569 2975 3.130516 CGATGGGTCAGTGTGTAGTATGT 59.869 47.826 0.00 0.00 0.00 2.29
2572 2978 2.093658 GGGTCAGTGTGTAGTATGTGGG 60.094 54.545 0.00 0.00 0.00 4.61
2573 2979 2.618053 GTCAGTGTGTAGTATGTGGGC 58.382 52.381 0.00 0.00 0.00 5.36
2574 2980 2.028476 GTCAGTGTGTAGTATGTGGGCA 60.028 50.000 0.00 0.00 0.00 5.36
2576 2982 1.555075 AGTGTGTAGTATGTGGGCAGG 59.445 52.381 0.00 0.00 0.00 4.85
2577 2983 1.278127 GTGTGTAGTATGTGGGCAGGT 59.722 52.381 0.00 0.00 0.00 4.00
2578 2984 2.498481 GTGTGTAGTATGTGGGCAGGTA 59.502 50.000 0.00 0.00 0.00 3.08
2579 2985 2.764010 TGTGTAGTATGTGGGCAGGTAG 59.236 50.000 0.00 0.00 0.00 3.18
2580 2986 2.102588 GTGTAGTATGTGGGCAGGTAGG 59.897 54.545 0.00 0.00 0.00 3.18
2629 3039 6.670927 GCATGATTAAGTGAGACGACTTTGTC 60.671 42.308 0.00 0.00 37.38 3.18
2639 3049 3.083600 GACTTTGTCGATGGCGCCG 62.084 63.158 23.90 10.43 37.46 6.46
2679 3101 4.401022 TCGGTCCATCGGTATGTATAGTT 58.599 43.478 0.00 0.00 0.00 2.24
2762 3298 3.059733 GCTCGACAGACATACTAGTACCG 60.060 52.174 4.31 2.12 0.00 4.02
2865 3406 5.010112 CCTCACATGTACAGTAGATGTAGGG 59.990 48.000 20.11 19.14 45.06 3.53
2866 3407 5.516044 TCACATGTACAGTAGATGTAGGGT 58.484 41.667 20.11 0.00 45.06 4.34
2867 3408 6.665695 TCACATGTACAGTAGATGTAGGGTA 58.334 40.000 20.11 4.62 45.06 3.69
2868 3409 6.544931 TCACATGTACAGTAGATGTAGGGTAC 59.455 42.308 20.11 0.00 45.06 3.34
2869 3410 5.530171 ACATGTACAGTAGATGTAGGGTACG 59.470 44.000 19.36 0.00 45.06 3.67
2870 3411 5.102953 TGTACAGTAGATGTAGGGTACGT 57.897 43.478 0.00 0.00 45.06 3.57
2871 3412 5.118990 TGTACAGTAGATGTAGGGTACGTC 58.881 45.833 0.00 0.00 45.06 4.34
2878 3419 4.715527 GATGTAGGGTACGTCTTGTCTT 57.284 45.455 0.00 0.00 40.65 3.01
2879 3420 3.928727 TGTAGGGTACGTCTTGTCTTG 57.071 47.619 0.00 0.00 0.00 3.02
2880 3421 3.225104 TGTAGGGTACGTCTTGTCTTGT 58.775 45.455 0.00 0.00 0.00 3.16
2881 3422 4.397420 TGTAGGGTACGTCTTGTCTTGTA 58.603 43.478 0.00 0.00 0.00 2.41
2882 3423 3.930634 AGGGTACGTCTTGTCTTGTAC 57.069 47.619 0.00 0.00 37.14 2.90
2893 3437 6.852853 CGTCTTGTCTTGTACTAAGTCGTTAA 59.147 38.462 0.00 0.00 30.94 2.01
2895 3439 7.645340 GTCTTGTCTTGTACTAAGTCGTTAACA 59.355 37.037 6.39 0.00 0.00 2.41
2933 3481 0.523072 ACGCAGTGATGAAATGGTGC 59.477 50.000 0.00 0.00 42.51 5.01
2937 3485 1.536766 CAGTGATGAAATGGTGCGTGT 59.463 47.619 0.00 0.00 0.00 4.49
3014 3582 1.059913 GAACCGATCCATGGATCCCT 58.940 55.000 37.70 26.22 45.95 4.20
3069 3637 5.337169 GGCTGTCACTCTCTAAACTCAAGAT 60.337 44.000 0.00 0.00 0.00 2.40
3083 3651 9.482627 CTAAACTCAAGATCAACAGTAAACTCT 57.517 33.333 0.00 0.00 0.00 3.24
3114 3682 5.607119 TGCCGATACTTTTTCTTTGAGAC 57.393 39.130 0.00 0.00 0.00 3.36
3158 3726 0.600782 TAACGGCGTGTGAAACCTCC 60.601 55.000 15.70 0.00 34.36 4.30
3184 3752 1.736126 ACGCACTCTGAATCATTGCAG 59.264 47.619 10.78 0.00 32.51 4.41
3192 3760 4.784177 TCTGAATCATTGCAGCCTCAATA 58.216 39.130 1.32 0.00 35.12 1.90
3220 3788 6.432472 TGTTTGCAGTTATAATGGATGTGACA 59.568 34.615 0.00 0.00 0.00 3.58
3221 3789 7.122501 TGTTTGCAGTTATAATGGATGTGACAT 59.877 33.333 0.00 0.00 0.00 3.06
3234 3802 3.733443 TGTGACATCCATCCATCGTAG 57.267 47.619 0.00 0.00 0.00 3.51
3235 3803 3.031013 TGTGACATCCATCCATCGTAGT 58.969 45.455 0.00 0.00 0.00 2.73
3236 3804 4.211920 TGTGACATCCATCCATCGTAGTA 58.788 43.478 0.00 0.00 0.00 1.82
3260 3829 4.852134 AACTTGCAAATCAGCATACACA 57.148 36.364 0.00 0.00 45.19 3.72
3294 3863 4.981389 GTATACGTACGACTACTCCAGG 57.019 50.000 24.41 0.00 0.00 4.45
3300 3869 3.491619 CGTACGACTACTCCAGGCTAGTA 60.492 52.174 10.44 0.00 0.00 1.82
3329 3898 8.421002 AGCTTACATGTTGGAGTAAAATGTTTT 58.579 29.630 2.30 0.00 43.22 2.43
3370 3961 1.310933 GCGTACCGAACTCTCAGGGA 61.311 60.000 0.00 0.00 0.00 4.20
3432 4023 3.684305 TGCAATCAATCAACTCGGTAGTG 59.316 43.478 0.00 0.00 35.62 2.74
3433 4024 3.063997 GCAATCAATCAACTCGGTAGTGG 59.936 47.826 0.00 0.00 35.62 4.00
3434 4025 4.503910 CAATCAATCAACTCGGTAGTGGA 58.496 43.478 0.00 0.00 40.06 4.02
3435 4026 3.868757 TCAATCAACTCGGTAGTGGAG 57.131 47.619 0.00 0.00 39.10 3.86
3456 4047 6.127793 GGAGTAGAAGATTCAGTACCCTGTA 58.872 44.000 0.00 0.00 39.82 2.74
3472 4063 4.376225 CCTGTAGGGTTGGGTTAAAGAA 57.624 45.455 0.00 0.00 0.00 2.52
3473 4064 4.732065 CCTGTAGGGTTGGGTTAAAGAAA 58.268 43.478 0.00 0.00 0.00 2.52
3474 4065 5.330233 CCTGTAGGGTTGGGTTAAAGAAAT 58.670 41.667 0.00 0.00 0.00 2.17
3505 4096 1.690283 CCGCAGCACTGAACTGATCG 61.690 60.000 0.81 0.00 37.32 3.69
3506 4097 0.733909 CGCAGCACTGAACTGATCGA 60.734 55.000 0.81 0.00 37.32 3.59
3507 4098 0.718343 GCAGCACTGAACTGATCGAC 59.282 55.000 0.81 0.00 37.32 4.20
3508 4099 1.671261 GCAGCACTGAACTGATCGACT 60.671 52.381 0.81 0.00 37.32 4.18
3524 4115 0.038526 GACTGACGGACGGATGTTGT 60.039 55.000 0.00 0.00 0.00 3.32
3563 4154 1.378514 GTGGATCACGGTGGCCATT 60.379 57.895 20.85 0.00 32.26 3.16
4565 5156 0.173708 GGCTCTTCTACACGGACCTG 59.826 60.000 0.00 0.00 0.00 4.00
4602 5193 1.745489 GTGTTCCCGCACCTCATCC 60.745 63.158 0.00 0.00 33.53 3.51
4938 5529 0.877213 CAGCATGGCGATGACGATGA 60.877 55.000 13.46 0.00 42.66 2.92
4939 5530 0.877649 AGCATGGCGATGACGATGAC 60.878 55.000 13.46 0.00 42.66 3.06
4940 5531 1.848640 CATGGCGATGACGATGACG 59.151 57.895 1.91 0.00 42.66 4.35
4941 5532 0.594796 CATGGCGATGACGATGACGA 60.595 55.000 1.91 0.00 42.66 4.20
4942 5533 0.315251 ATGGCGATGACGATGACGAT 59.685 50.000 0.00 0.00 42.66 3.73
4943 5534 0.594796 TGGCGATGACGATGACGATG 60.595 55.000 0.00 0.00 42.66 3.84
5043 5634 1.226379 CGCATGAACATGAACGGCC 60.226 57.895 17.40 0.00 41.20 6.13
5262 5853 0.031449 GGAGCAGAGGTACATCGAGC 59.969 60.000 16.64 16.64 0.00 5.03
5474 6065 4.215908 TCTAGCTACCACTCCACCATTAG 58.784 47.826 0.00 0.00 0.00 1.73
5483 6074 2.895372 CACCATTAGCGGACCGGC 60.895 66.667 17.22 8.14 0.00 6.13
5507 6103 2.421107 CGACACCCTCTACTACCTAGCA 60.421 54.545 0.00 0.00 0.00 3.49
5512 6108 3.169099 CCCTCTACTACCTAGCATGCAT 58.831 50.000 21.98 7.68 0.00 3.96
5513 6109 3.056250 CCCTCTACTACCTAGCATGCATG 60.056 52.174 22.70 22.70 0.00 4.06
5528 6124 2.903855 ATGCAGCTGCGTATGGCC 60.904 61.111 31.61 4.06 45.83 5.36
5553 6150 2.677613 GCCGGGTACTATTGGTTTCGAA 60.678 50.000 2.18 0.00 0.00 3.71
5568 6165 2.027625 CGAACGCTTGTGGAGGACC 61.028 63.158 0.00 0.00 0.00 4.46
5569 6166 1.671379 GAACGCTTGTGGAGGACCC 60.671 63.158 0.00 0.00 34.81 4.46
5570 6167 2.391724 GAACGCTTGTGGAGGACCCA 62.392 60.000 0.00 0.00 44.25 4.51
5577 6174 2.447920 TGGAGGACCCATCGACCA 59.552 61.111 0.00 0.00 40.82 4.02
5597 6194 5.734855 CCAGGAGGTTAATGTGAATTACG 57.265 43.478 0.00 0.00 0.00 3.18
5598 6195 5.183228 CCAGGAGGTTAATGTGAATTACGT 58.817 41.667 0.00 0.00 0.00 3.57
5599 6196 6.342906 CCAGGAGGTTAATGTGAATTACGTA 58.657 40.000 0.00 0.00 0.00 3.57
5600 6197 6.257193 CCAGGAGGTTAATGTGAATTACGTAC 59.743 42.308 0.00 0.00 0.00 3.67
5609 6206 3.122111 TGTGAATTACGTACATGCGTGTG 59.878 43.478 21.92 8.32 45.33 3.82
5629 6226 1.936436 GATCAATGGCGCCACTTGCA 61.936 55.000 35.50 22.87 41.33 4.08
5635 6232 0.180171 TGGCGCCACTTGCATATACT 59.820 50.000 29.03 0.00 41.33 2.12
5636 6233 1.414550 TGGCGCCACTTGCATATACTA 59.585 47.619 29.03 0.00 41.33 1.82
5637 6234 2.038426 TGGCGCCACTTGCATATACTAT 59.962 45.455 29.03 0.00 41.33 2.12
5638 6235 3.259625 TGGCGCCACTTGCATATACTATA 59.740 43.478 29.03 0.00 41.33 1.31
5639 6236 4.081142 TGGCGCCACTTGCATATACTATAT 60.081 41.667 29.03 0.00 41.33 0.86
5640 6237 5.128008 TGGCGCCACTTGCATATACTATATA 59.872 40.000 29.03 0.00 41.33 0.86
5659 6256 9.004717 ACTATATATGGAAGGATACGATGATCG 57.995 37.037 14.01 14.01 46.93 3.69
5724 6321 3.247648 GCGTACATAGCACCCTTGTATTG 59.752 47.826 0.00 0.00 34.19 1.90
5727 6324 5.690409 CGTACATAGCACCCTTGTATTGTAG 59.310 44.000 0.00 0.00 0.00 2.74
5764 6361 6.500684 TTGTAGGTTGATGCAATTCTTCTC 57.499 37.500 0.00 0.00 0.00 2.87
5765 6362 4.943705 TGTAGGTTGATGCAATTCTTCTCC 59.056 41.667 0.00 0.00 0.00 3.71
5766 6363 3.359950 AGGTTGATGCAATTCTTCTCCC 58.640 45.455 0.00 0.00 0.00 4.30
5776 6373 4.221482 GCAATTCTTCTCCCCAGTTCATTT 59.779 41.667 0.00 0.00 0.00 2.32
5777 6374 5.623141 GCAATTCTTCTCCCCAGTTCATTTC 60.623 44.000 0.00 0.00 0.00 2.17
5797 6397 9.681692 TCATTTCATCATTTTTAGTTCACTGTG 57.318 29.630 0.17 0.17 0.00 3.66
5798 6398 7.928908 TTTCATCATTTTTAGTTCACTGTGC 57.071 32.000 2.12 0.00 0.00 4.57
5858 6464 2.060326 TGTGAGTCATTTCGTCGGAC 57.940 50.000 0.00 0.00 0.00 4.79
5859 6465 0.982673 GTGAGTCATTTCGTCGGACG 59.017 55.000 23.73 23.73 44.19 4.79
5860 6466 0.731514 TGAGTCATTTCGTCGGACGC 60.732 55.000 24.76 10.26 42.21 5.19
5861 6467 0.456312 GAGTCATTTCGTCGGACGCT 60.456 55.000 24.76 14.81 42.21 5.07
5862 6468 0.806868 AGTCATTTCGTCGGACGCTA 59.193 50.000 24.76 15.07 42.21 4.26
5863 6469 1.404391 AGTCATTTCGTCGGACGCTAT 59.596 47.619 24.76 16.55 42.21 2.97
5864 6470 1.517276 GTCATTTCGTCGGACGCTATG 59.483 52.381 24.76 25.11 42.21 2.23
5865 6471 0.229753 CATTTCGTCGGACGCTATGC 59.770 55.000 24.76 0.00 42.21 3.14
5866 6472 0.179121 ATTTCGTCGGACGCTATGCA 60.179 50.000 24.76 4.43 42.21 3.96
5867 6473 0.388778 TTTCGTCGGACGCTATGCAA 60.389 50.000 24.76 10.51 42.21 4.08
5868 6474 0.388778 TTCGTCGGACGCTATGCAAA 60.389 50.000 24.76 9.80 42.21 3.68
5869 6475 0.388778 TCGTCGGACGCTATGCAAAA 60.389 50.000 24.76 2.14 42.21 2.44
5870 6476 0.025001 CGTCGGACGCTATGCAAAAG 59.975 55.000 18.36 0.00 33.65 2.27
5871 6477 0.373716 GTCGGACGCTATGCAAAAGG 59.626 55.000 0.00 0.00 0.00 3.11
5872 6478 0.742990 TCGGACGCTATGCAAAAGGG 60.743 55.000 13.02 13.02 0.00 3.95
5873 6479 1.024579 CGGACGCTATGCAAAAGGGT 61.025 55.000 18.28 18.28 42.22 4.34
5874 6480 0.451783 GGACGCTATGCAAAAGGGTG 59.548 55.000 21.77 6.77 39.91 4.61
5875 6481 1.165270 GACGCTATGCAAAAGGGTGT 58.835 50.000 21.77 9.46 39.91 4.16
5876 6482 1.130561 GACGCTATGCAAAAGGGTGTC 59.869 52.381 21.77 13.52 39.91 3.67
5877 6483 1.164411 CGCTATGCAAAAGGGTGTCA 58.836 50.000 0.00 0.00 0.00 3.58
5878 6484 1.135689 CGCTATGCAAAAGGGTGTCAC 60.136 52.381 0.00 0.00 0.00 3.67
5879 6485 2.162681 GCTATGCAAAAGGGTGTCACT 58.837 47.619 2.35 0.00 0.00 3.41
5880 6486 2.162408 GCTATGCAAAAGGGTGTCACTC 59.838 50.000 2.35 0.00 0.00 3.51
5881 6487 1.238439 ATGCAAAAGGGTGTCACTCG 58.762 50.000 2.35 0.00 0.00 4.18
5882 6488 0.817634 TGCAAAAGGGTGTCACTCGG 60.818 55.000 2.35 0.00 0.00 4.63
5883 6489 1.949257 CAAAAGGGTGTCACTCGGC 59.051 57.895 2.35 0.00 0.00 5.54
5884 6490 0.817634 CAAAAGGGTGTCACTCGGCA 60.818 55.000 2.35 0.00 0.00 5.69
5885 6491 0.106918 AAAAGGGTGTCACTCGGCAA 60.107 50.000 2.35 0.00 0.00 4.52
5886 6492 0.106918 AAAGGGTGTCACTCGGCAAA 60.107 50.000 2.35 0.00 0.00 3.68
5887 6493 0.110486 AAGGGTGTCACTCGGCAAAT 59.890 50.000 2.35 0.00 0.00 2.32
5888 6494 0.321653 AGGGTGTCACTCGGCAAATC 60.322 55.000 2.35 0.00 0.00 2.17
5889 6495 1.635663 GGGTGTCACTCGGCAAATCG 61.636 60.000 2.35 0.00 0.00 3.34
5890 6496 1.132640 GTGTCACTCGGCAAATCGC 59.867 57.895 0.00 0.00 41.28 4.58
5891 6497 1.301322 TGTCACTCGGCAAATCGCA 60.301 52.632 0.00 0.00 45.17 5.10
5892 6498 1.132640 GTCACTCGGCAAATCGCAC 59.867 57.895 0.00 0.00 45.17 5.34
5893 6499 1.301322 TCACTCGGCAAATCGCACA 60.301 52.632 0.00 0.00 45.17 4.57
5894 6500 0.673333 TCACTCGGCAAATCGCACAT 60.673 50.000 0.00 0.00 45.17 3.21
5895 6501 0.168788 CACTCGGCAAATCGCACATT 59.831 50.000 0.00 0.00 45.17 2.71
5896 6502 0.881118 ACTCGGCAAATCGCACATTT 59.119 45.000 0.00 0.00 45.17 2.32
5897 6503 1.261989 CTCGGCAAATCGCACATTTG 58.738 50.000 11.98 11.98 45.17 2.32
5898 6504 0.595588 TCGGCAAATCGCACATTTGT 59.404 45.000 15.90 0.00 45.17 2.83
5899 6505 1.000827 TCGGCAAATCGCACATTTGTT 60.001 42.857 15.90 0.00 45.17 2.83
5900 6506 1.124658 CGGCAAATCGCACATTTGTTG 59.875 47.619 15.90 7.99 45.17 3.33
5901 6507 2.402305 GGCAAATCGCACATTTGTTGA 58.598 42.857 15.90 0.00 45.17 3.18
5902 6508 2.409378 GGCAAATCGCACATTTGTTGAG 59.591 45.455 15.90 0.00 45.17 3.02
5903 6509 3.052036 GCAAATCGCACATTTGTTGAGT 58.948 40.909 15.90 0.00 40.19 3.41
5904 6510 3.490526 GCAAATCGCACATTTGTTGAGTT 59.509 39.130 15.90 0.00 40.19 3.01
5905 6511 4.025813 GCAAATCGCACATTTGTTGAGTTT 60.026 37.500 15.90 0.00 40.19 2.66
5906 6512 5.659426 CAAATCGCACATTTGTTGAGTTTC 58.341 37.500 9.14 0.00 35.07 2.78
5907 6513 4.836125 ATCGCACATTTGTTGAGTTTCT 57.164 36.364 0.00 0.00 0.00 2.52
5908 6514 4.630894 TCGCACATTTGTTGAGTTTCTT 57.369 36.364 0.00 0.00 0.00 2.52
5909 6515 4.597079 TCGCACATTTGTTGAGTTTCTTC 58.403 39.130 0.00 0.00 0.00 2.87
5910 6516 3.730715 CGCACATTTGTTGAGTTTCTTCC 59.269 43.478 0.00 0.00 0.00 3.46
5911 6517 4.681744 GCACATTTGTTGAGTTTCTTCCA 58.318 39.130 0.00 0.00 0.00 3.53
5912 6518 4.504097 GCACATTTGTTGAGTTTCTTCCAC 59.496 41.667 0.00 0.00 0.00 4.02
5913 6519 5.649557 CACATTTGTTGAGTTTCTTCCACA 58.350 37.500 0.00 0.00 0.00 4.17
5914 6520 6.275335 CACATTTGTTGAGTTTCTTCCACAT 58.725 36.000 0.00 0.00 0.00 3.21
5915 6521 6.199531 CACATTTGTTGAGTTTCTTCCACATG 59.800 38.462 0.00 0.00 0.00 3.21
5916 6522 4.916983 TTGTTGAGTTTCTTCCACATGG 57.083 40.909 0.00 0.00 0.00 3.66
5917 6523 2.622942 TGTTGAGTTTCTTCCACATGGC 59.377 45.455 0.00 0.00 34.44 4.40
5918 6524 1.909700 TGAGTTTCTTCCACATGGCC 58.090 50.000 0.00 0.00 34.44 5.36
5919 6525 1.425066 TGAGTTTCTTCCACATGGCCT 59.575 47.619 3.32 0.00 34.44 5.19
5920 6526 1.815003 GAGTTTCTTCCACATGGCCTG 59.185 52.381 3.32 2.01 34.44 4.85
5921 6527 1.425066 AGTTTCTTCCACATGGCCTGA 59.575 47.619 3.32 0.00 34.44 3.86
5922 6528 2.158475 AGTTTCTTCCACATGGCCTGAA 60.158 45.455 3.32 0.00 34.44 3.02
5923 6529 2.827921 GTTTCTTCCACATGGCCTGAAT 59.172 45.455 3.32 0.00 34.44 2.57
5924 6530 2.905415 TCTTCCACATGGCCTGAATT 57.095 45.000 3.32 0.00 34.44 2.17
5925 6531 2.726821 TCTTCCACATGGCCTGAATTC 58.273 47.619 3.32 0.00 34.44 2.17
5926 6532 1.753073 CTTCCACATGGCCTGAATTCC 59.247 52.381 3.32 0.00 34.44 3.01
5927 6533 1.002069 TCCACATGGCCTGAATTCCT 58.998 50.000 3.32 0.00 34.44 3.36
5928 6534 1.108776 CCACATGGCCTGAATTCCTG 58.891 55.000 3.32 0.00 0.00 3.86
5929 6535 1.617804 CCACATGGCCTGAATTCCTGT 60.618 52.381 3.32 0.00 0.00 4.00
5930 6536 1.747355 CACATGGCCTGAATTCCTGTC 59.253 52.381 3.32 0.00 0.00 3.51
5931 6537 1.355381 ACATGGCCTGAATTCCTGTCA 59.645 47.619 3.32 1.92 0.00 3.58
5932 6538 1.747355 CATGGCCTGAATTCCTGTCAC 59.253 52.381 3.32 0.00 0.00 3.67
5933 6539 0.321564 TGGCCTGAATTCCTGTCACG 60.322 55.000 3.32 0.00 0.00 4.35
5934 6540 0.321653 GGCCTGAATTCCTGTCACGT 60.322 55.000 2.27 0.00 0.00 4.49
5935 6541 0.798776 GCCTGAATTCCTGTCACGTG 59.201 55.000 9.94 9.94 0.00 4.49
5936 6542 0.798776 CCTGAATTCCTGTCACGTGC 59.201 55.000 11.67 6.86 0.00 5.34
5937 6543 1.609061 CCTGAATTCCTGTCACGTGCT 60.609 52.381 11.67 0.00 0.00 4.40
5938 6544 2.353704 CCTGAATTCCTGTCACGTGCTA 60.354 50.000 11.67 0.59 0.00 3.49
5939 6545 2.668457 CTGAATTCCTGTCACGTGCTAC 59.332 50.000 11.67 5.46 0.00 3.58
5940 6546 2.299013 TGAATTCCTGTCACGTGCTACT 59.701 45.455 11.67 0.00 0.00 2.57
5941 6547 2.656560 ATTCCTGTCACGTGCTACTC 57.343 50.000 11.67 0.00 0.00 2.59
5942 6548 0.240145 TTCCTGTCACGTGCTACTCG 59.760 55.000 11.67 0.92 0.00 4.18
5943 6549 0.604511 TCCTGTCACGTGCTACTCGA 60.605 55.000 11.67 2.09 0.00 4.04
5944 6550 0.454620 CCTGTCACGTGCTACTCGAC 60.455 60.000 11.67 2.19 0.00 4.20
5945 6551 0.517755 CTGTCACGTGCTACTCGACT 59.482 55.000 11.67 0.00 0.00 4.18
5946 6552 1.730612 CTGTCACGTGCTACTCGACTA 59.269 52.381 11.67 0.00 0.00 2.59
5947 6553 2.145536 TGTCACGTGCTACTCGACTAA 58.854 47.619 11.67 0.00 0.00 2.24
5948 6554 2.096069 TGTCACGTGCTACTCGACTAAC 60.096 50.000 11.67 0.00 0.00 2.34
5949 6555 2.159234 GTCACGTGCTACTCGACTAACT 59.841 50.000 11.67 0.00 0.00 2.24
5950 6556 2.810274 TCACGTGCTACTCGACTAACTT 59.190 45.455 11.67 0.00 0.00 2.66
5951 6557 3.996363 TCACGTGCTACTCGACTAACTTA 59.004 43.478 11.67 0.00 0.00 2.24
5952 6558 4.633126 TCACGTGCTACTCGACTAACTTAT 59.367 41.667 11.67 0.00 0.00 1.73
5953 6559 5.122869 TCACGTGCTACTCGACTAACTTATT 59.877 40.000 11.67 0.00 0.00 1.40
5954 6560 5.798934 CACGTGCTACTCGACTAACTTATTT 59.201 40.000 0.82 0.00 0.00 1.40
5955 6561 5.798934 ACGTGCTACTCGACTAACTTATTTG 59.201 40.000 0.00 0.00 0.00 2.32
5956 6562 5.798934 CGTGCTACTCGACTAACTTATTTGT 59.201 40.000 0.00 0.00 0.00 2.83
5957 6563 6.237227 CGTGCTACTCGACTAACTTATTTGTG 60.237 42.308 0.00 0.00 0.00 3.33
5958 6564 6.585322 GTGCTACTCGACTAACTTATTTGTGT 59.415 38.462 0.00 0.00 0.00 3.72
5959 6565 7.115947 GTGCTACTCGACTAACTTATTTGTGTT 59.884 37.037 0.00 0.00 0.00 3.32
5960 6566 7.327761 TGCTACTCGACTAACTTATTTGTGTTC 59.672 37.037 0.00 0.00 0.00 3.18
5961 6567 7.541437 GCTACTCGACTAACTTATTTGTGTTCT 59.459 37.037 0.00 0.00 0.00 3.01
5962 6568 9.408069 CTACTCGACTAACTTATTTGTGTTCTT 57.592 33.333 0.00 0.00 0.00 2.52
5963 6569 8.658499 ACTCGACTAACTTATTTGTGTTCTTT 57.342 30.769 0.00 0.00 0.00 2.52
5964 6570 9.754382 ACTCGACTAACTTATTTGTGTTCTTTA 57.246 29.630 0.00 0.00 0.00 1.85
5966 6572 9.754382 TCGACTAACTTATTTGTGTTCTTTAGT 57.246 29.630 0.00 0.00 32.54 2.24
6031 6637 7.235080 CGTCGATACATAGTGTCTATAAGTGG 58.765 42.308 0.00 0.00 0.00 4.00
6035 6641 8.350722 CGATACATAGTGTCTATAAGTGGTGTT 58.649 37.037 0.00 0.00 0.00 3.32
6144 6751 1.669795 GCAAACTGGAAGGCGAATTGG 60.670 52.381 0.00 0.00 39.30 3.16
6153 6760 3.056891 GGAAGGCGAATTGGAAAACATGA 60.057 43.478 0.00 0.00 0.00 3.07
6154 6761 4.555262 GAAGGCGAATTGGAAAACATGAA 58.445 39.130 0.00 0.00 0.00 2.57
6226 6833 4.343231 TGCCATTATCACACCAACAAGAT 58.657 39.130 0.00 0.00 0.00 2.40
6243 6850 4.183865 CAAGATCGAACACATTAGAGCCA 58.816 43.478 0.00 0.00 0.00 4.75
6372 7218 4.201724 GGTTGCGTGAGATTACTGAATCAC 60.202 45.833 0.87 0.00 43.51 3.06
6391 7237 0.180171 CCAATATGTGGGCGGTGAGA 59.820 55.000 0.00 0.00 44.64 3.27
6411 7263 4.220724 AGAATGCAATGGTATGATGCCTT 58.779 39.130 0.30 0.00 39.31 4.35
6443 7295 4.854173 TGCATATCTTTGCCAAGACCTTA 58.146 39.130 1.73 0.00 42.05 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.793259 TTTAGAACACTGACATATCCTCTTTTT 57.207 29.630 0.00 0.00 0.00 1.94
11 12 9.793259 TTTTAGAACACTGACATATCCTCTTTT 57.207 29.630 0.00 0.00 0.00 2.27
12 13 9.442047 CTTTTAGAACACTGACATATCCTCTTT 57.558 33.333 0.00 0.00 0.00 2.52
13 14 8.043710 CCTTTTAGAACACTGACATATCCTCTT 58.956 37.037 0.00 0.00 0.00 2.85
14 15 7.400339 TCCTTTTAGAACACTGACATATCCTCT 59.600 37.037 0.00 0.00 0.00 3.69
15 16 7.556844 TCCTTTTAGAACACTGACATATCCTC 58.443 38.462 0.00 0.00 0.00 3.71
16 17 7.496346 TCCTTTTAGAACACTGACATATCCT 57.504 36.000 0.00 0.00 0.00 3.24
17 18 9.262358 GTATCCTTTTAGAACACTGACATATCC 57.738 37.037 0.00 0.00 0.00 2.59
19 20 9.823647 CAGTATCCTTTTAGAACACTGACATAT 57.176 33.333 0.00 0.00 35.12 1.78
20 21 8.258007 CCAGTATCCTTTTAGAACACTGACATA 58.742 37.037 0.00 0.00 35.12 2.29
21 22 7.106239 CCAGTATCCTTTTAGAACACTGACAT 58.894 38.462 0.00 0.00 35.12 3.06
22 23 6.042781 ACCAGTATCCTTTTAGAACACTGACA 59.957 38.462 0.00 0.00 35.12 3.58
23 24 6.465084 ACCAGTATCCTTTTAGAACACTGAC 58.535 40.000 0.00 0.00 35.12 3.51
24 25 6.681729 ACCAGTATCCTTTTAGAACACTGA 57.318 37.500 0.00 0.00 35.12 3.41
25 26 9.449719 AATTACCAGTATCCTTTTAGAACACTG 57.550 33.333 0.00 0.00 33.40 3.66
37 38 9.628500 GTTTCCTTGATAAATTACCAGTATCCT 57.372 33.333 0.00 0.00 0.00 3.24
38 39 9.628500 AGTTTCCTTGATAAATTACCAGTATCC 57.372 33.333 0.00 0.00 0.00 2.59
48 49 9.660544 AGGCCATTATAGTTTCCTTGATAAATT 57.339 29.630 5.01 0.00 0.00 1.82
49 50 9.082313 CAGGCCATTATAGTTTCCTTGATAAAT 57.918 33.333 5.01 0.00 0.00 1.40
50 51 8.058847 ACAGGCCATTATAGTTTCCTTGATAAA 58.941 33.333 5.01 0.00 0.00 1.40
51 52 7.582719 ACAGGCCATTATAGTTTCCTTGATAA 58.417 34.615 5.01 0.00 0.00 1.75
52 53 7.149202 ACAGGCCATTATAGTTTCCTTGATA 57.851 36.000 5.01 0.00 0.00 2.15
53 54 6.018433 ACAGGCCATTATAGTTTCCTTGAT 57.982 37.500 5.01 0.00 0.00 2.57
54 55 5.450818 ACAGGCCATTATAGTTTCCTTGA 57.549 39.130 5.01 0.00 0.00 3.02
55 56 6.207417 CCATACAGGCCATTATAGTTTCCTTG 59.793 42.308 5.01 0.00 0.00 3.61
56 57 6.306987 CCATACAGGCCATTATAGTTTCCTT 58.693 40.000 5.01 0.00 0.00 3.36
57 58 5.880901 CCATACAGGCCATTATAGTTTCCT 58.119 41.667 5.01 0.00 0.00 3.36
73 74 1.524621 CCCAGGAAGCGCCATACAG 60.525 63.158 2.29 0.00 40.02 2.74
90 91 3.967203 CTCAGCTAGGAACGTAGTACC 57.033 52.381 0.00 0.00 45.00 3.34
102 105 5.596836 ACAATCTCTTCTTCCTCAGCTAG 57.403 43.478 0.00 0.00 0.00 3.42
124 127 6.893554 TCAAGTAACCCACTACTATGCTCTTA 59.106 38.462 0.00 0.00 36.04 2.10
126 129 5.269991 TCAAGTAACCCACTACTATGCTCT 58.730 41.667 0.00 0.00 36.04 4.09
127 130 5.452077 CCTCAAGTAACCCACTACTATGCTC 60.452 48.000 0.00 0.00 36.04 4.26
128 131 4.406003 CCTCAAGTAACCCACTACTATGCT 59.594 45.833 0.00 0.00 36.04 3.79
129 132 4.404715 TCCTCAAGTAACCCACTACTATGC 59.595 45.833 0.00 0.00 36.04 3.14
130 133 6.540438 TTCCTCAAGTAACCCACTACTATG 57.460 41.667 0.00 0.00 36.04 2.23
131 134 7.016858 TGTTTTCCTCAAGTAACCCACTACTAT 59.983 37.037 0.00 0.00 36.04 2.12
134 139 5.370679 TGTTTTCCTCAAGTAACCCACTAC 58.629 41.667 0.00 0.00 36.04 2.73
137 142 4.457466 TCTGTTTTCCTCAAGTAACCCAC 58.543 43.478 0.00 0.00 0.00 4.61
192 197 1.064825 AAGATTCAGTCGGGGGTGTT 58.935 50.000 0.00 0.00 0.00 3.32
196 201 0.468648 GGGTAAGATTCAGTCGGGGG 59.531 60.000 0.00 0.00 0.00 5.40
200 205 1.067212 CCTCGGGGTAAGATTCAGTCG 59.933 57.143 0.00 0.00 0.00 4.18
201 206 2.108970 ACCTCGGGGTAAGATTCAGTC 58.891 52.381 4.23 0.00 45.32 3.51
214 219 0.833287 ATCCACTGATTGACCTCGGG 59.167 55.000 0.00 0.00 0.00 5.14
217 222 1.482593 ACGGATCCACTGATTGACCTC 59.517 52.381 13.41 0.00 0.00 3.85
219 224 1.207089 TGACGGATCCACTGATTGACC 59.793 52.381 13.41 0.00 0.00 4.02
220 225 2.166459 TCTGACGGATCCACTGATTGAC 59.834 50.000 13.41 0.00 0.00 3.18
221 226 2.456577 TCTGACGGATCCACTGATTGA 58.543 47.619 13.41 0.00 0.00 2.57
222 227 2.967599 TCTGACGGATCCACTGATTG 57.032 50.000 13.41 0.00 0.00 2.67
223 228 3.981071 TTTCTGACGGATCCACTGATT 57.019 42.857 13.41 0.00 0.00 2.57
224 229 3.452264 TCATTTCTGACGGATCCACTGAT 59.548 43.478 13.41 0.00 0.00 2.90
225 230 2.831526 TCATTTCTGACGGATCCACTGA 59.168 45.455 13.41 11.37 0.00 3.41
226 231 3.251479 TCATTTCTGACGGATCCACTG 57.749 47.619 13.41 9.24 0.00 3.66
228 233 2.939103 CCTTCATTTCTGACGGATCCAC 59.061 50.000 13.41 5.76 42.11 4.02
229 234 2.837591 TCCTTCATTTCTGACGGATCCA 59.162 45.455 13.41 0.00 43.01 3.41
230 235 3.543680 TCCTTCATTTCTGACGGATCC 57.456 47.619 0.00 0.00 43.01 3.36
236 241 3.000322 CGCATACGTCCTTCATTTCTGAC 60.000 47.826 0.00 0.00 33.53 3.51
237 242 3.186909 CGCATACGTCCTTCATTTCTGA 58.813 45.455 0.00 0.00 33.53 3.27
238 243 3.575858 CGCATACGTCCTTCATTTCTG 57.424 47.619 0.00 0.00 33.53 3.02
256 392 2.697761 TAGCTCTCCGTCCACACGC 61.698 63.158 0.00 0.00 45.29 5.34
257 393 1.136984 GTAGCTCTCCGTCCACACG 59.863 63.158 0.00 0.00 46.29 4.49
258 394 0.601558 TTGTAGCTCTCCGTCCACAC 59.398 55.000 0.00 0.00 0.00 3.82
260 396 1.133407 CTCTTGTAGCTCTCCGTCCAC 59.867 57.143 0.00 0.00 0.00 4.02
302 441 2.009774 GTTGGATCCACTCATTGACCG 58.990 52.381 15.91 0.00 0.00 4.79
352 496 3.814268 TCCGCCGCACGTACCTAC 61.814 66.667 0.00 0.00 41.42 3.18
397 691 0.319211 TTCAACCACGCGTAGACAGG 60.319 55.000 13.44 11.80 0.00 4.00
442 736 0.874175 TATCTTTCCATCACCGCGCG 60.874 55.000 25.67 25.67 0.00 6.86
445 739 3.026630 TCGATATCTTTCCATCACCGC 57.973 47.619 0.34 0.00 0.00 5.68
447 741 7.930217 TCAAAAATCGATATCTTTCCATCACC 58.070 34.615 0.00 0.00 0.00 4.02
499 794 4.665451 AGGGTGTGATCACAATTCATTGA 58.335 39.130 29.42 1.05 45.45 2.57
683 992 4.913335 ATGTGGAGTAGTACATACGTGG 57.087 45.455 0.00 0.00 39.55 4.94
696 1005 4.142138 GCTGCTACAGTACTTATGTGGAGT 60.142 45.833 0.00 0.00 33.43 3.85
698 1007 4.023980 AGCTGCTACAGTACTTATGTGGA 58.976 43.478 0.00 0.00 33.43 4.02
700 1009 8.425577 AATTAAGCTGCTACAGTACTTATGTG 57.574 34.615 0.90 0.00 33.43 3.21
705 1014 8.398665 GCAATTAATTAAGCTGCTACAGTACTT 58.601 33.333 20.18 0.00 33.43 2.24
706 1015 7.770897 AGCAATTAATTAAGCTGCTACAGTACT 59.229 33.333 25.23 8.59 36.87 2.73
707 1016 7.852945 CAGCAATTAATTAAGCTGCTACAGTAC 59.147 37.037 25.64 5.29 46.51 2.73
708 1017 7.919690 CAGCAATTAATTAAGCTGCTACAGTA 58.080 34.615 25.64 0.00 46.51 2.74
709 1018 6.789262 CAGCAATTAATTAAGCTGCTACAGT 58.211 36.000 25.64 10.57 46.51 3.55
733 1042 1.078426 AGTATGTGAACGGCAGGGC 60.078 57.895 0.00 0.00 0.00 5.19
761 1070 2.248487 CGCGGTACTAGTTGTCTTGTC 58.752 52.381 0.00 0.00 32.55 3.18
762 1071 1.668047 GCGCGGTACTAGTTGTCTTGT 60.668 52.381 8.83 0.00 34.44 3.16
763 1072 0.989890 GCGCGGTACTAGTTGTCTTG 59.010 55.000 8.83 0.00 0.00 3.02
764 1073 0.455633 CGCGCGGTACTAGTTGTCTT 60.456 55.000 24.84 0.00 0.00 3.01
765 1074 1.136147 CGCGCGGTACTAGTTGTCT 59.864 57.895 24.84 0.00 0.00 3.41
766 1075 2.502965 GCGCGCGGTACTAGTTGTC 61.503 63.158 33.06 5.84 0.00 3.18
798 1110 5.712917 AGCTAGTACTACTATTGGCATCTCC 59.287 44.000 10.96 0.00 29.08 3.71
862 1174 1.001860 GTGCTCCTGGATGGATCTAGC 59.998 57.143 0.00 0.00 45.16 3.42
925 1237 8.092687 GGATCCAAGAAGTAAGTGTGTAACTAA 58.907 37.037 6.95 0.00 38.56 2.24
926 1238 7.453752 AGGATCCAAGAAGTAAGTGTGTAACTA 59.546 37.037 15.82 0.00 38.56 2.24
927 1239 6.270231 AGGATCCAAGAAGTAAGTGTGTAACT 59.730 38.462 15.82 0.00 42.60 2.24
928 1240 6.465084 AGGATCCAAGAAGTAAGTGTGTAAC 58.535 40.000 15.82 0.00 37.35 2.50
991 1303 0.964700 TGCTCAGCCATCGATCCTAG 59.035 55.000 0.00 0.00 0.00 3.02
992 1304 0.964700 CTGCTCAGCCATCGATCCTA 59.035 55.000 0.00 0.00 0.00 2.94
993 1305 1.747145 CTGCTCAGCCATCGATCCT 59.253 57.895 0.00 0.00 0.00 3.24
994 1306 4.357699 CTGCTCAGCCATCGATCC 57.642 61.111 0.00 0.00 0.00 3.36
1375 1702 0.460987 AGCGAGGAAGGAAATCTGCG 60.461 55.000 0.00 0.00 0.00 5.18
1428 1757 7.698550 CGCGCAATCTAATTACTATGATCTACT 59.301 37.037 8.75 0.00 0.00 2.57
1430 1759 7.696872 GTCGCGCAATCTAATTACTATGATCTA 59.303 37.037 8.75 0.00 0.00 1.98
1431 1760 6.528423 GTCGCGCAATCTAATTACTATGATCT 59.472 38.462 8.75 0.00 0.00 2.75
1432 1761 6.504954 CGTCGCGCAATCTAATTACTATGATC 60.505 42.308 8.75 0.00 0.00 2.92
1433 1762 5.286320 CGTCGCGCAATCTAATTACTATGAT 59.714 40.000 8.75 0.00 0.00 2.45
1434 1763 4.615541 CGTCGCGCAATCTAATTACTATGA 59.384 41.667 8.75 0.00 0.00 2.15
1435 1764 4.381863 ACGTCGCGCAATCTAATTACTATG 59.618 41.667 8.75 0.00 0.00 2.23
1436 1765 4.381863 CACGTCGCGCAATCTAATTACTAT 59.618 41.667 8.75 0.00 0.00 2.12
1475 1804 3.883997 GCTAGCTAGCTAGGTGCAG 57.116 57.895 39.60 24.61 45.62 4.41
1496 1825 4.475028 CGTCAATTTGTTGCATGCTAAGA 58.525 39.130 20.33 7.39 0.00 2.10
1508 1837 2.624316 CAGATGCTGCGTCAATTTGT 57.376 45.000 22.70 0.00 0.00 2.83
1545 1874 2.777400 TTGGGTCGGGGGTCCAAA 60.777 61.111 0.00 0.00 37.58 3.28
1628 1958 4.864247 CACTTGAGTTTGGAAAACCTTGTG 59.136 41.667 0.00 1.85 0.00 3.33
1644 1974 0.890996 GGCCACTTGACCCACTTGAG 60.891 60.000 0.00 0.00 0.00 3.02
1646 1976 2.260869 CGGCCACTTGACCCACTTG 61.261 63.158 2.24 0.00 0.00 3.16
1656 1986 2.032634 CATGCACGTACGGCCACTT 61.033 57.895 21.06 0.00 0.00 3.16
1666 1996 2.645730 ACAAACAAACACATGCACGT 57.354 40.000 0.00 0.00 0.00 4.49
1668 1998 4.660352 AACAACAAACAAACACATGCAC 57.340 36.364 0.00 0.00 0.00 4.57
1669 1999 6.974932 ATAAACAACAAACAAACACATGCA 57.025 29.167 0.00 0.00 0.00 3.96
1670 2000 8.599774 AGTAATAAACAACAAACAAACACATGC 58.400 29.630 0.00 0.00 0.00 4.06
1671 2001 9.898806 CAGTAATAAACAACAAACAAACACATG 57.101 29.630 0.00 0.00 0.00 3.21
1672 2002 9.646427 ACAGTAATAAACAACAAACAAACACAT 57.354 25.926 0.00 0.00 0.00 3.21
1712 2042 8.625651 CAATATCAACTAGTAGTAGCTCTGTGT 58.374 37.037 2.50 0.00 0.00 3.72
1713 2043 8.625651 ACAATATCAACTAGTAGTAGCTCTGTG 58.374 37.037 2.50 0.00 0.00 3.66
1732 2064 8.851960 TCACGTTGATCACTAACTACAATATC 57.148 34.615 0.00 0.00 0.00 1.63
1736 2068 7.823665 AGTATCACGTTGATCACTAACTACAA 58.176 34.615 0.00 0.00 38.26 2.41
1746 2078 8.197439 ACAATATGAGAAGTATCACGTTGATCA 58.803 33.333 0.00 0.00 38.26 2.92
1785 2120 8.047413 TGTGCTCGATCGTAGGATTATTTATA 57.953 34.615 15.94 0.00 31.51 0.98
1786 2121 6.920817 TGTGCTCGATCGTAGGATTATTTAT 58.079 36.000 15.94 0.00 31.51 1.40
1787 2122 6.321848 TGTGCTCGATCGTAGGATTATTTA 57.678 37.500 15.94 0.00 31.51 1.40
1788 2123 5.196341 TGTGCTCGATCGTAGGATTATTT 57.804 39.130 15.94 0.00 31.51 1.40
1789 2124 4.848562 TGTGCTCGATCGTAGGATTATT 57.151 40.909 15.94 0.00 31.51 1.40
1790 2125 4.738124 CATGTGCTCGATCGTAGGATTAT 58.262 43.478 15.94 8.45 31.51 1.28
1807 2142 2.997303 CACAAACATTCCCATGCATGTG 59.003 45.455 24.58 17.95 40.80 3.21
1831 2166 8.370493 TCTACTCATGCATGCTAACTAAAATC 57.630 34.615 22.25 0.00 0.00 2.17
1855 2207 6.406961 CCTCTTTAATTTGGGCCTTTGGTATC 60.407 42.308 4.53 0.00 0.00 2.24
2290 2642 1.528586 AGGCGCTAGTACGTACGTATG 59.471 52.381 29.05 21.65 32.82 2.39
2292 2644 2.394708 CTAGGCGCTAGTACGTACGTA 58.605 52.381 23.60 23.60 34.88 3.57
2293 2645 1.212616 CTAGGCGCTAGTACGTACGT 58.787 55.000 25.98 25.98 34.88 3.57
2294 2646 0.110912 GCTAGGCGCTAGTACGTACG 60.111 60.000 19.49 15.01 36.53 3.67
2359 2746 4.275936 CACTTGTTACCCATAGCAATAGGC 59.724 45.833 0.00 0.00 45.30 3.93
2360 2747 5.296780 CACACTTGTTACCCATAGCAATAGG 59.703 44.000 0.00 0.00 31.89 2.57
2361 2748 6.112734 TCACACTTGTTACCCATAGCAATAG 58.887 40.000 0.00 0.00 31.89 1.73
2362 2749 6.056090 TCACACTTGTTACCCATAGCAATA 57.944 37.500 0.00 0.00 31.89 1.90
2363 2750 4.917385 TCACACTTGTTACCCATAGCAAT 58.083 39.130 0.00 0.00 31.89 3.56
2364 2751 4.359434 TCACACTTGTTACCCATAGCAA 57.641 40.909 0.00 0.00 31.48 3.91
2365 2752 4.069304 GTTCACACTTGTTACCCATAGCA 58.931 43.478 0.00 0.00 0.00 3.49
2366 2753 3.124636 CGTTCACACTTGTTACCCATAGC 59.875 47.826 0.00 0.00 0.00 2.97
2388 2775 1.369448 CTAGCTGGTCGTCGATCGC 60.369 63.158 11.09 12.41 39.67 4.58
2447 2848 2.482839 GCTTTTCCTCGCTGCTCTATCT 60.483 50.000 0.00 0.00 0.00 1.98
2448 2849 1.864082 GCTTTTCCTCGCTGCTCTATC 59.136 52.381 0.00 0.00 0.00 2.08
2449 2850 1.208052 TGCTTTTCCTCGCTGCTCTAT 59.792 47.619 0.00 0.00 0.00 1.98
2450 2851 0.608130 TGCTTTTCCTCGCTGCTCTA 59.392 50.000 0.00 0.00 0.00 2.43
2451 2852 0.250467 TTGCTTTTCCTCGCTGCTCT 60.250 50.000 0.00 0.00 0.00 4.09
2452 2853 0.593128 TTTGCTTTTCCTCGCTGCTC 59.407 50.000 0.00 0.00 0.00 4.26
2485 2888 5.627499 TTCTCGCATCAATTAATATGCCC 57.373 39.130 14.68 0.00 44.50 5.36
2517 2923 2.186903 GCGGACATGGACGGATGT 59.813 61.111 12.24 0.00 39.34 3.06
2558 2964 1.651737 ACCTGCCCACATACTACACA 58.348 50.000 0.00 0.00 0.00 3.72
2563 2969 1.008449 AGACCTACCTGCCCACATACT 59.992 52.381 0.00 0.00 0.00 2.12
2564 2970 1.413077 GAGACCTACCTGCCCACATAC 59.587 57.143 0.00 0.00 0.00 2.39
2565 2971 1.291033 AGAGACCTACCTGCCCACATA 59.709 52.381 0.00 0.00 0.00 2.29
2566 2972 0.043334 AGAGACCTACCTGCCCACAT 59.957 55.000 0.00 0.00 0.00 3.21
2567 2973 0.178903 AAGAGACCTACCTGCCCACA 60.179 55.000 0.00 0.00 0.00 4.17
2568 2974 0.250513 CAAGAGACCTACCTGCCCAC 59.749 60.000 0.00 0.00 0.00 4.61
2569 2975 0.178903 ACAAGAGACCTACCTGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
2572 2978 2.427812 GGACTACAAGAGACCTACCTGC 59.572 54.545 0.00 0.00 37.07 4.85
2573 2979 3.697045 CTGGACTACAAGAGACCTACCTG 59.303 52.174 0.00 0.00 40.35 4.00
2574 2980 3.878527 GCTGGACTACAAGAGACCTACCT 60.879 52.174 0.00 0.00 40.35 3.08
2576 2982 2.427812 GGCTGGACTACAAGAGACCTAC 59.572 54.545 0.00 0.00 40.35 3.18
2577 2983 2.736347 GGCTGGACTACAAGAGACCTA 58.264 52.381 0.00 0.00 40.35 3.08
2578 2984 1.562783 GGCTGGACTACAAGAGACCT 58.437 55.000 0.00 0.00 40.35 3.85
2579 2985 0.173708 CGGCTGGACTACAAGAGACC 59.826 60.000 0.00 0.00 40.14 3.85
2580 2986 0.889306 ACGGCTGGACTACAAGAGAC 59.111 55.000 0.00 0.00 0.00 3.36
2639 3049 1.221414 GATAACTGCTGGATGGCGAC 58.779 55.000 0.00 0.00 34.52 5.19
2679 3101 6.864685 GCTGCGTAAACACCACTATATATACA 59.135 38.462 0.00 0.00 0.00 2.29
2762 3298 1.827969 AGGTGGAGCACAGTAGATGTC 59.172 52.381 0.00 0.00 41.41 3.06
2865 3406 5.787551 CGACTTAGTACAAGACAAGACGTAC 59.212 44.000 10.71 0.00 33.90 3.67
2866 3407 5.466728 ACGACTTAGTACAAGACAAGACGTA 59.533 40.000 14.46 0.00 41.03 3.57
2867 3408 4.274459 ACGACTTAGTACAAGACAAGACGT 59.726 41.667 10.71 11.49 39.72 4.34
2868 3409 4.781071 ACGACTTAGTACAAGACAAGACG 58.219 43.478 10.71 11.02 38.67 4.18
2869 3410 7.645340 TGTTAACGACTTAGTACAAGACAAGAC 59.355 37.037 10.71 0.20 0.00 3.01
2870 3411 7.706159 TGTTAACGACTTAGTACAAGACAAGA 58.294 34.615 10.71 0.00 0.00 3.02
2871 3412 7.646922 ACTGTTAACGACTTAGTACAAGACAAG 59.353 37.037 10.71 2.21 0.00 3.16
2873 3414 7.031226 ACTGTTAACGACTTAGTACAAGACA 57.969 36.000 10.71 4.48 0.00 3.41
2874 3415 6.301842 CGACTGTTAACGACTTAGTACAAGAC 59.698 42.308 10.71 5.26 0.00 3.01
2875 3416 6.202762 TCGACTGTTAACGACTTAGTACAAGA 59.797 38.462 10.71 0.00 33.62 3.02
2876 3417 6.365839 TCGACTGTTAACGACTTAGTACAAG 58.634 40.000 0.26 0.00 33.62 3.16
2877 3418 6.299023 TCGACTGTTAACGACTTAGTACAA 57.701 37.500 0.26 0.00 33.62 2.41
2878 3419 5.922739 TCGACTGTTAACGACTTAGTACA 57.077 39.130 0.26 0.00 33.62 2.90
2893 3437 1.546476 GGAGAAGATGGTGTCGACTGT 59.454 52.381 17.92 0.00 0.00 3.55
2895 3439 1.546476 GTGGAGAAGATGGTGTCGACT 59.454 52.381 17.92 0.00 0.00 4.18
2927 3475 1.961793 AGTTAACACACACGCACCAT 58.038 45.000 8.61 0.00 0.00 3.55
2928 3476 1.398739 CAAGTTAACACACACGCACCA 59.601 47.619 8.61 0.00 0.00 4.17
2929 3477 1.399089 ACAAGTTAACACACACGCACC 59.601 47.619 8.61 0.00 0.00 5.01
2930 3478 2.094575 TGACAAGTTAACACACACGCAC 59.905 45.455 8.61 0.00 0.00 5.34
2931 3479 2.094575 GTGACAAGTTAACACACACGCA 59.905 45.455 8.61 0.00 35.06 5.24
2932 3480 2.094575 TGTGACAAGTTAACACACACGC 59.905 45.455 17.29 8.94 39.17 5.34
2933 3481 4.329296 TTGTGACAAGTTAACACACACG 57.671 40.909 19.41 0.00 42.80 4.49
2937 3485 6.502136 TGATGTTTGTGACAAGTTAACACA 57.498 33.333 8.61 2.16 42.62 3.72
3014 3582 4.021719 CCTGAAAACTACGTACAGAGGGAA 60.022 45.833 10.74 0.00 0.00 3.97
3069 3637 9.595823 GGCATAGTTAATAGAGTTTACTGTTGA 57.404 33.333 0.00 0.00 0.00 3.18
3088 3656 7.064728 GTCTCAAAGAAAAAGTATCGGCATAGT 59.935 37.037 0.00 0.00 0.00 2.12
3158 3726 1.337167 TGATTCAGAGTGCGTGTCCTG 60.337 52.381 0.00 0.00 0.00 3.86
3184 3752 8.925161 TTATAACTGCAAACATTTATTGAGGC 57.075 30.769 0.00 0.00 34.52 4.70
3192 3760 8.530311 TCACATCCATTATAACTGCAAACATTT 58.470 29.630 0.00 0.00 0.00 2.32
3220 3788 6.516860 GCAAGTTAGTACTACGATGGATGGAT 60.517 42.308 0.91 0.00 33.17 3.41
3221 3789 5.221185 GCAAGTTAGTACTACGATGGATGGA 60.221 44.000 0.91 0.00 33.17 3.41
3234 3802 6.961554 GTGTATGCTGATTTGCAAGTTAGTAC 59.038 38.462 13.97 10.24 46.61 2.73
3235 3803 6.652900 TGTGTATGCTGATTTGCAAGTTAGTA 59.347 34.615 13.97 10.60 46.61 1.82
3236 3804 5.473162 TGTGTATGCTGATTTGCAAGTTAGT 59.527 36.000 13.97 0.00 46.61 2.24
3294 3863 6.145338 TCCAACATGTAAGCTACTACTAGC 57.855 41.667 0.00 0.00 45.30 3.42
3300 3869 7.883311 ACATTTTACTCCAACATGTAAGCTACT 59.117 33.333 0.00 0.00 31.46 2.57
3456 4047 7.565768 TCTTGTTAATTTCTTTAACCCAACCCT 59.434 33.333 5.94 0.00 46.08 4.34
3462 4053 7.380333 CGGTGTTCTTGTTAATTTCTTTAACCC 59.620 37.037 5.94 0.00 46.08 4.11
3463 4054 7.096353 GCGGTGTTCTTGTTAATTTCTTTAACC 60.096 37.037 5.94 0.00 46.08 2.85
3464 4055 7.432838 TGCGGTGTTCTTGTTAATTTCTTTAAC 59.567 33.333 2.13 2.13 46.59 2.01
3469 4060 4.556699 GCTGCGGTGTTCTTGTTAATTTCT 60.557 41.667 0.00 0.00 0.00 2.52
3470 4061 3.668656 GCTGCGGTGTTCTTGTTAATTTC 59.331 43.478 0.00 0.00 0.00 2.17
3472 4063 2.621055 TGCTGCGGTGTTCTTGTTAATT 59.379 40.909 0.00 0.00 0.00 1.40
3473 4064 2.031157 GTGCTGCGGTGTTCTTGTTAAT 60.031 45.455 0.00 0.00 0.00 1.40
3474 4065 1.332375 GTGCTGCGGTGTTCTTGTTAA 59.668 47.619 0.00 0.00 0.00 2.01
3484 4075 0.952497 ATCAGTTCAGTGCTGCGGTG 60.952 55.000 0.00 0.00 34.21 4.94
3488 4079 0.718343 GTCGATCAGTTCAGTGCTGC 59.282 55.000 0.00 0.00 34.21 5.25
3505 4096 0.038526 ACAACATCCGTCCGTCAGTC 60.039 55.000 0.00 0.00 0.00 3.51
3506 4097 1.250328 TACAACATCCGTCCGTCAGT 58.750 50.000 0.00 0.00 0.00 3.41
3507 4098 2.193447 CATACAACATCCGTCCGTCAG 58.807 52.381 0.00 0.00 0.00 3.51
3508 4099 1.737696 GCATACAACATCCGTCCGTCA 60.738 52.381 0.00 0.00 0.00 4.35
3524 4115 1.413812 ACGATCTGGTCTGCATGCATA 59.586 47.619 22.97 11.96 0.00 3.14
3563 4154 2.973899 GAGAAGAGCGCCACCAGA 59.026 61.111 2.29 0.00 0.00 3.86
4313 4904 1.438651 CCATGAAGACGGCGAAGAAA 58.561 50.000 16.62 0.00 0.00 2.52
4602 5193 1.123077 TGGATGGACGGGATCTTCTG 58.877 55.000 0.00 0.00 0.00 3.02
4926 5517 1.208642 TGCATCGTCATCGTCATCGC 61.209 55.000 0.00 0.00 38.33 4.58
4943 5534 2.155194 CGACGAGTAGTGCTGCTGC 61.155 63.158 8.89 8.89 40.20 5.25
5043 5634 2.525422 CCGACGGCATCATGATCAG 58.475 57.895 4.86 4.69 0.00 2.90
5262 5853 2.143419 CCCCCTTCTCCATCTCCCG 61.143 68.421 0.00 0.00 0.00 5.14
5483 6074 1.212441 AGGTAGTAGAGGGTGTCGAGG 59.788 57.143 0.00 0.00 0.00 4.63
5491 6082 2.598565 TGCATGCTAGGTAGTAGAGGG 58.401 52.381 20.33 0.00 0.00 4.30
5507 6103 1.652563 CATACGCAGCTGCATGCAT 59.347 52.632 36.03 20.09 46.87 3.96
5531 6127 1.671979 GAAACCAATAGTACCCGGCC 58.328 55.000 0.00 0.00 0.00 6.13
5533 6129 2.931969 GTTCGAAACCAATAGTACCCGG 59.068 50.000 0.00 0.00 0.00 5.73
5534 6130 2.599973 CGTTCGAAACCAATAGTACCCG 59.400 50.000 0.00 0.00 0.00 5.28
5536 6132 3.256558 AGCGTTCGAAACCAATAGTACC 58.743 45.455 0.00 0.00 0.00 3.34
5537 6133 4.151157 ACAAGCGTTCGAAACCAATAGTAC 59.849 41.667 0.00 0.00 0.00 2.73
5538 6134 4.150980 CACAAGCGTTCGAAACCAATAGTA 59.849 41.667 0.00 0.00 0.00 1.82
5539 6135 3.059188 CACAAGCGTTCGAAACCAATAGT 60.059 43.478 0.00 0.00 0.00 2.12
5540 6136 3.479006 CACAAGCGTTCGAAACCAATAG 58.521 45.455 0.00 0.00 0.00 1.73
5541 6137 2.224549 CCACAAGCGTTCGAAACCAATA 59.775 45.455 0.00 0.00 0.00 1.90
5553 6150 2.847234 TGGGTCCTCCACAAGCGT 60.847 61.111 0.00 0.00 41.46 5.07
5577 6174 6.938507 TGTACGTAATTCACATTAACCTCCT 58.061 36.000 0.00 0.00 0.00 3.69
5596 6193 1.355005 TTGATCCACACGCATGTACG 58.645 50.000 0.00 0.00 36.72 3.67
5597 6194 2.032054 CCATTGATCCACACGCATGTAC 59.968 50.000 0.00 0.00 36.72 2.90
5598 6195 2.287769 CCATTGATCCACACGCATGTA 58.712 47.619 0.00 0.00 36.72 2.29
5599 6196 1.097232 CCATTGATCCACACGCATGT 58.903 50.000 0.00 0.00 40.80 3.21
5600 6197 0.248743 GCCATTGATCCACACGCATG 60.249 55.000 0.00 0.00 0.00 4.06
5609 6206 1.434696 CAAGTGGCGCCATTGATCC 59.565 57.895 35.23 18.95 0.00 3.36
5659 6256 2.540265 ATCTGCCTTGATCGATGGAC 57.460 50.000 0.54 0.00 0.00 4.02
5700 6297 0.178068 CAAGGGTGCTATGTACGCCT 59.822 55.000 0.00 0.00 37.83 5.52
5754 6351 5.477984 TGAAATGAACTGGGGAGAAGAATTG 59.522 40.000 0.00 0.00 0.00 2.32
5764 6361 7.614494 ACTAAAAATGATGAAATGAACTGGGG 58.386 34.615 0.00 0.00 0.00 4.96
5765 6362 9.143631 GAACTAAAAATGATGAAATGAACTGGG 57.856 33.333 0.00 0.00 0.00 4.45
5766 6363 9.695526 TGAACTAAAAATGATGAAATGAACTGG 57.304 29.630 0.00 0.00 0.00 4.00
5776 6373 5.238432 ACGCACAGTGAACTAAAAATGATGA 59.762 36.000 4.15 0.00 0.00 2.92
5777 6374 5.451908 ACGCACAGTGAACTAAAAATGATG 58.548 37.500 4.15 0.00 0.00 3.07
5795 6395 3.138304 TCCATATTCCTAATGCACGCAC 58.862 45.455 0.00 0.00 0.00 5.34
5796 6396 3.483808 TCCATATTCCTAATGCACGCA 57.516 42.857 0.00 0.00 0.00 5.24
5797 6397 3.815401 AGTTCCATATTCCTAATGCACGC 59.185 43.478 0.00 0.00 0.00 5.34
5798 6398 6.201517 CAAAGTTCCATATTCCTAATGCACG 58.798 40.000 0.00 0.00 0.00 5.34
5836 6440 1.459592 CCGACGAAATGACTCACAACC 59.540 52.381 0.00 0.00 0.00 3.77
5838 6442 2.400399 GTCCGACGAAATGACTCACAA 58.600 47.619 0.00 0.00 0.00 3.33
5840 6444 0.982673 CGTCCGACGAAATGACTCAC 59.017 55.000 16.03 0.00 46.05 3.51
5841 6445 0.731514 GCGTCCGACGAAATGACTCA 60.732 55.000 24.78 0.00 46.05 3.41
5858 6464 1.135689 GTGACACCCTTTTGCATAGCG 60.136 52.381 0.00 0.00 0.00 4.26
5859 6465 2.162408 GAGTGACACCCTTTTGCATAGC 59.838 50.000 0.84 0.00 0.00 2.97
5860 6466 2.416547 CGAGTGACACCCTTTTGCATAG 59.583 50.000 0.84 0.00 0.00 2.23
5861 6467 2.422597 CGAGTGACACCCTTTTGCATA 58.577 47.619 0.84 0.00 0.00 3.14
5862 6468 1.238439 CGAGTGACACCCTTTTGCAT 58.762 50.000 0.84 0.00 0.00 3.96
5863 6469 0.817634 CCGAGTGACACCCTTTTGCA 60.818 55.000 0.84 0.00 0.00 4.08
5864 6470 1.949257 CCGAGTGACACCCTTTTGC 59.051 57.895 0.84 0.00 0.00 3.68
5865 6471 0.817634 TGCCGAGTGACACCCTTTTG 60.818 55.000 0.84 0.00 0.00 2.44
5866 6472 0.106918 TTGCCGAGTGACACCCTTTT 60.107 50.000 0.84 0.00 0.00 2.27
5867 6473 0.106918 TTTGCCGAGTGACACCCTTT 60.107 50.000 0.84 0.00 0.00 3.11
5868 6474 0.110486 ATTTGCCGAGTGACACCCTT 59.890 50.000 0.84 0.00 0.00 3.95
5869 6475 0.321653 GATTTGCCGAGTGACACCCT 60.322 55.000 0.84 0.00 0.00 4.34
5870 6476 1.635663 CGATTTGCCGAGTGACACCC 61.636 60.000 0.84 0.00 0.00 4.61
5871 6477 1.787847 CGATTTGCCGAGTGACACC 59.212 57.895 0.84 0.00 0.00 4.16
5872 6478 1.132640 GCGATTTGCCGAGTGACAC 59.867 57.895 0.00 0.00 37.76 3.67
5873 6479 1.301322 TGCGATTTGCCGAGTGACA 60.301 52.632 0.00 0.00 45.60 3.58
5874 6480 1.132640 GTGCGATTTGCCGAGTGAC 59.867 57.895 0.00 0.00 45.60 3.67
5875 6481 0.673333 ATGTGCGATTTGCCGAGTGA 60.673 50.000 0.00 0.00 45.60 3.41
5876 6482 0.168788 AATGTGCGATTTGCCGAGTG 59.831 50.000 0.00 0.00 45.60 3.51
5877 6483 0.881118 AAATGTGCGATTTGCCGAGT 59.119 45.000 0.00 0.00 45.60 4.18
5878 6484 1.261989 CAAATGTGCGATTTGCCGAG 58.738 50.000 7.78 0.00 45.60 4.63
5879 6485 0.595588 ACAAATGTGCGATTTGCCGA 59.404 45.000 16.87 0.00 45.60 5.54
5880 6486 1.124658 CAACAAATGTGCGATTTGCCG 59.875 47.619 16.87 7.86 45.60 5.69
5881 6487 2.402305 TCAACAAATGTGCGATTTGCC 58.598 42.857 16.87 0.00 45.60 4.52
5882 6488 3.052036 ACTCAACAAATGTGCGATTTGC 58.948 40.909 16.87 0.00 41.36 3.68
5883 6489 5.459762 AGAAACTCAACAAATGTGCGATTTG 59.540 36.000 15.83 15.83 42.81 2.32
5884 6490 5.591099 AGAAACTCAACAAATGTGCGATTT 58.409 33.333 0.00 0.00 0.00 2.17
5885 6491 5.186996 AGAAACTCAACAAATGTGCGATT 57.813 34.783 0.00 0.00 0.00 3.34
5886 6492 4.836125 AGAAACTCAACAAATGTGCGAT 57.164 36.364 0.00 0.00 0.00 4.58
5887 6493 4.497340 GGAAGAAACTCAACAAATGTGCGA 60.497 41.667 0.00 0.00 0.00 5.10
5888 6494 3.730715 GGAAGAAACTCAACAAATGTGCG 59.269 43.478 0.00 0.00 0.00 5.34
5889 6495 4.504097 GTGGAAGAAACTCAACAAATGTGC 59.496 41.667 0.00 0.00 0.00 4.57
5890 6496 5.649557 TGTGGAAGAAACTCAACAAATGTG 58.350 37.500 0.00 0.00 0.00 3.21
5891 6497 5.913137 TGTGGAAGAAACTCAACAAATGT 57.087 34.783 0.00 0.00 0.00 2.71
5892 6498 5.693104 CCATGTGGAAGAAACTCAACAAATG 59.307 40.000 0.00 0.00 37.39 2.32
5893 6499 5.739935 GCCATGTGGAAGAAACTCAACAAAT 60.740 40.000 2.55 0.00 37.39 2.32
5894 6500 4.441356 GCCATGTGGAAGAAACTCAACAAA 60.441 41.667 2.55 0.00 37.39 2.83
5895 6501 3.068024 GCCATGTGGAAGAAACTCAACAA 59.932 43.478 2.55 0.00 37.39 2.83
5896 6502 2.622942 GCCATGTGGAAGAAACTCAACA 59.377 45.455 2.55 0.00 37.39 3.33
5897 6503 2.029918 GGCCATGTGGAAGAAACTCAAC 60.030 50.000 0.00 0.00 37.39 3.18
5898 6504 2.158475 AGGCCATGTGGAAGAAACTCAA 60.158 45.455 5.01 0.00 37.39 3.02
5899 6505 1.425066 AGGCCATGTGGAAGAAACTCA 59.575 47.619 5.01 0.00 37.39 3.41
5900 6506 1.815003 CAGGCCATGTGGAAGAAACTC 59.185 52.381 5.01 0.00 37.39 3.01
5901 6507 1.425066 TCAGGCCATGTGGAAGAAACT 59.575 47.619 5.01 0.00 37.39 2.66
5902 6508 1.909700 TCAGGCCATGTGGAAGAAAC 58.090 50.000 5.01 0.00 37.39 2.78
5903 6509 2.673775 TTCAGGCCATGTGGAAGAAA 57.326 45.000 5.01 0.00 37.39 2.52
5904 6510 2.905415 ATTCAGGCCATGTGGAAGAA 57.095 45.000 5.01 3.77 37.39 2.52
5905 6511 2.621407 GGAATTCAGGCCATGTGGAAGA 60.621 50.000 5.01 0.00 37.39 2.87
5906 6512 1.753073 GGAATTCAGGCCATGTGGAAG 59.247 52.381 5.01 0.00 37.39 3.46
5907 6513 1.358787 AGGAATTCAGGCCATGTGGAA 59.641 47.619 5.01 0.48 37.39 3.53
5908 6514 1.002069 AGGAATTCAGGCCATGTGGA 58.998 50.000 5.01 0.00 37.39 4.02
5909 6515 1.108776 CAGGAATTCAGGCCATGTGG 58.891 55.000 5.01 0.00 38.53 4.17
5910 6516 1.747355 GACAGGAATTCAGGCCATGTG 59.253 52.381 5.01 0.00 0.00 3.21
5911 6517 1.355381 TGACAGGAATTCAGGCCATGT 59.645 47.619 5.01 2.02 0.00 3.21
5912 6518 1.747355 GTGACAGGAATTCAGGCCATG 59.253 52.381 5.01 0.00 0.00 3.66
5913 6519 1.679944 CGTGACAGGAATTCAGGCCAT 60.680 52.381 5.01 0.00 0.00 4.40
5914 6520 0.321564 CGTGACAGGAATTCAGGCCA 60.322 55.000 5.01 0.00 0.00 5.36
5915 6521 0.321653 ACGTGACAGGAATTCAGGCC 60.322 55.000 7.93 0.00 33.11 5.19
5916 6522 0.798776 CACGTGACAGGAATTCAGGC 59.201 55.000 10.90 1.71 33.11 4.85
5917 6523 0.798776 GCACGTGACAGGAATTCAGG 59.201 55.000 22.23 0.77 35.45 3.86
5918 6524 1.800805 AGCACGTGACAGGAATTCAG 58.199 50.000 22.23 1.58 0.00 3.02
5919 6525 2.299013 AGTAGCACGTGACAGGAATTCA 59.701 45.455 22.23 0.00 0.00 2.57
5920 6526 2.924290 GAGTAGCACGTGACAGGAATTC 59.076 50.000 22.23 0.00 0.00 2.17
5921 6527 2.671351 CGAGTAGCACGTGACAGGAATT 60.671 50.000 22.23 0.00 0.00 2.17
5922 6528 1.135373 CGAGTAGCACGTGACAGGAAT 60.135 52.381 22.23 0.00 0.00 3.01
5923 6529 0.240145 CGAGTAGCACGTGACAGGAA 59.760 55.000 22.23 0.00 0.00 3.36
5924 6530 0.604511 TCGAGTAGCACGTGACAGGA 60.605 55.000 22.23 7.91 0.00 3.86
5925 6531 0.454620 GTCGAGTAGCACGTGACAGG 60.455 60.000 22.23 5.61 30.86 4.00
5926 6532 0.517755 AGTCGAGTAGCACGTGACAG 59.482 55.000 22.23 8.02 32.21 3.51
5927 6533 1.799544 TAGTCGAGTAGCACGTGACA 58.200 50.000 22.23 1.92 32.21 3.58
5928 6534 2.159234 AGTTAGTCGAGTAGCACGTGAC 59.841 50.000 22.23 9.77 0.00 3.67
5929 6535 2.420642 AGTTAGTCGAGTAGCACGTGA 58.579 47.619 22.23 0.00 0.00 4.35
5930 6536 2.896243 AGTTAGTCGAGTAGCACGTG 57.104 50.000 12.28 12.28 0.00 4.49
5931 6537 5.557891 AATAAGTTAGTCGAGTAGCACGT 57.442 39.130 15.41 6.38 0.00 4.49
5932 6538 5.798934 ACAAATAAGTTAGTCGAGTAGCACG 59.201 40.000 15.41 0.00 0.00 5.34
5933 6539 6.585322 ACACAAATAAGTTAGTCGAGTAGCAC 59.415 38.462 15.41 5.58 0.00 4.40
5934 6540 6.684686 ACACAAATAAGTTAGTCGAGTAGCA 58.315 36.000 15.41 0.00 0.00 3.49
5935 6541 7.541437 AGAACACAAATAAGTTAGTCGAGTAGC 59.459 37.037 6.03 6.03 0.00 3.58
5936 6542 8.967552 AGAACACAAATAAGTTAGTCGAGTAG 57.032 34.615 0.00 0.00 0.00 2.57
5937 6543 9.754382 AAAGAACACAAATAAGTTAGTCGAGTA 57.246 29.630 0.00 0.00 0.00 2.59
5938 6544 8.658499 AAAGAACACAAATAAGTTAGTCGAGT 57.342 30.769 0.00 0.00 0.00 4.18
5940 6546 9.754382 ACTAAAGAACACAAATAAGTTAGTCGA 57.246 29.630 0.00 0.00 0.00 4.20
5952 6558 9.649167 GGCTAGTTATAGACTAAAGAACACAAA 57.351 33.333 0.00 0.00 40.25 2.83
5953 6559 8.809066 TGGCTAGTTATAGACTAAAGAACACAA 58.191 33.333 0.00 0.00 40.25 3.33
5954 6560 8.357290 TGGCTAGTTATAGACTAAAGAACACA 57.643 34.615 0.00 0.00 40.25 3.72
5957 6563 9.911138 GGTATGGCTAGTTATAGACTAAAGAAC 57.089 37.037 0.00 0.00 40.25 3.01
5958 6564 9.086758 GGGTATGGCTAGTTATAGACTAAAGAA 57.913 37.037 0.00 0.00 40.25 2.52
5959 6565 7.392673 CGGGTATGGCTAGTTATAGACTAAAGA 59.607 40.741 0.00 0.00 40.25 2.52
5960 6566 7.536855 CGGGTATGGCTAGTTATAGACTAAAG 58.463 42.308 0.00 0.00 40.25 1.85
5961 6567 6.071728 GCGGGTATGGCTAGTTATAGACTAAA 60.072 42.308 0.00 0.00 40.25 1.85
5962 6568 5.416952 GCGGGTATGGCTAGTTATAGACTAA 59.583 44.000 0.00 0.00 40.25 2.24
5963 6569 4.946157 GCGGGTATGGCTAGTTATAGACTA 59.054 45.833 0.00 0.00 37.97 2.59
5964 6570 3.762823 GCGGGTATGGCTAGTTATAGACT 59.237 47.826 0.00 0.00 37.97 3.24
5965 6571 3.427233 CGCGGGTATGGCTAGTTATAGAC 60.427 52.174 0.00 0.00 37.57 2.59
5966 6572 2.751259 CGCGGGTATGGCTAGTTATAGA 59.249 50.000 0.00 0.00 0.00 1.98
5967 6573 2.734492 GCGCGGGTATGGCTAGTTATAG 60.734 54.545 8.83 0.00 0.00 1.31
5968 6574 1.203052 GCGCGGGTATGGCTAGTTATA 59.797 52.381 8.83 0.00 0.00 0.98
5969 6575 0.037605 GCGCGGGTATGGCTAGTTAT 60.038 55.000 8.83 0.00 0.00 1.89
5970 6576 1.364901 GCGCGGGTATGGCTAGTTA 59.635 57.895 8.83 0.00 0.00 2.24
5971 6577 2.108362 GCGCGGGTATGGCTAGTT 59.892 61.111 8.83 0.00 0.00 2.24
6000 6606 0.820891 ACTATGTATCGACGGGGCGT 60.821 55.000 0.00 0.00 45.10 5.68
6008 6614 7.718314 ACACCACTTATAGACACTATGTATCGA 59.282 37.037 0.00 0.00 0.00 3.59
6106 6713 9.403110 CCAGTTTGCTTCTATGCATATTATTTC 57.597 33.333 6.92 0.00 42.96 2.17
6120 6727 0.108585 TCGCCTTCCAGTTTGCTTCT 59.891 50.000 0.00 0.00 0.00 2.85
6133 6740 4.599047 TTCATGTTTTCCAATTCGCCTT 57.401 36.364 0.00 0.00 0.00 4.35
6179 6786 9.081997 CAATGTGTACTTTCTACTTTGCAAAAA 57.918 29.630 13.84 1.40 0.00 1.94
6193 6800 6.350110 GGTGTGATAATGGCAATGTGTACTTT 60.350 38.462 0.00 0.00 0.00 2.66
6226 6833 4.200838 TGAATGGCTCTAATGTGTTCGA 57.799 40.909 0.00 0.00 0.00 3.71
6355 7201 8.554528 CACATATTGGTGATTCAGTAATCTCAC 58.445 37.037 0.00 0.00 41.83 3.51
6372 7218 0.180171 TCTCACCGCCCACATATTGG 59.820 55.000 0.00 0.00 46.47 3.16
6391 7237 6.482898 TTTAAGGCATCATACCATTGCATT 57.517 33.333 0.00 0.00 42.31 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.