AutoCloner

Multiple sequence alignment - TraesCS2A01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G255600	chr2A	100.000	3214	0	0	1	3214	391358821	391355608	0.000000e+00	5936.0
1	TraesCS2A01G255600	chr2A	100.000	28	0	0	212	239	758265612	758265639	6.000000e-03	52.8
2	TraesCS2A01G255600	chr2B	91.156	2578	85	45	1	2507	395807336	395809841	0.000000e+00	3365.0
3	TraesCS2A01G255600	chr2B	94.444	36	0	1	212	247	23029078	23029045	2.000000e-03	54.7
4	TraesCS2A01G255600	chr2D	91.513	1897	62	29	650	2507	326350155	326351991	0.000000e+00	2519.0
5	TraesCS2A01G255600	chr2D	88.838	439	16	11	235	648	326349150	326349580	2.860000e-140	508.0
6	TraesCS2A01G255600	chr2D	97.531	162	2	2	3	164	326348990	326349149	3.160000e-70	276.0
7	TraesCS2A01G255600	chr1B	98.592	710	8	2	2506	3214	537325986	537326694	0.000000e+00	1254.0
8	TraesCS2A01G255600	chr1B	96.471	170	6	0	3045	3214	278475313	278475144	6.790000e-72	281.0
9	TraesCS2A01G255600	chr6B	98.590	709	9	1	2506	3214	134483584	134484291	0.000000e+00	1253.0
10	TraesCS2A01G255600	chr6B	84.746	236	22	9	2986	3210	134837327	134837559	1.160000e-54	224.0
11	TraesCS2A01G255600	chr7B	98.588	708	9	1	2507	3214	97965629	97964923	0.000000e+00	1251.0
12	TraesCS2A01G255600	chr7B	96.957	230	6	1	2986	3214	544883808	544883579	5.030000e-103	385.0
13	TraesCS2A01G255600	chr7B	100.000	28	0	0	212	239	219584694	219584721	6.000000e-03	52.8
14	TraesCS2A01G255600	chr1A	98.263	518	9	0	2697	3214	528076733	528076216	0.000000e+00	907.0
15	TraesCS2A01G255600	chr1A	100.000	28	0	0	212	239	27400085	27400112	6.000000e-03	52.8
16	TraesCS2A01G255600	chr3D	96.371	496	15	2	2506	3000	84656460	84656953	0.000000e+00	813.0
17	TraesCS2A01G255600	chr3D	96.319	489	12	2	2505	2993	388438925	388439407	0.000000e+00	798.0
18	TraesCS2A01G255600	chr4D	96.715	487	13	2	2508	2993	358453280	358452796	0.000000e+00	808.0
19	TraesCS2A01G255600	chr7D	96.509	487	15	1	2507	2993	255419821	255419337	0.000000e+00	804.0
20	TraesCS2A01G255600	chr7D	96.099	487	17	1	2507	2993	255417070	255417554	0.000000e+00	793.0
21	TraesCS2A01G255600	chr4B	96.507	229	8	0	2986	3214	371979144	371979372	2.340000e-101	379.0
22	TraesCS2A01G255600	chr5B	95.633	229	10	0	2986	3214	42141319	42141091	5.070000e-98	368.0
23	TraesCS2A01G255600	chr5B	100.000	28	0	0	212	239	384574565	384574592	6.000000e-03	52.8
24	TraesCS2A01G255600	chrUn	94.444	36	1	1	204	239	473967763	473967797	2.000000e-03	54.7
25	TraesCS2A01G255600	chr6A	100.000	28	0	0	212	239	208117513	208117540	6.000000e-03	52.8
26	TraesCS2A01G255600	chr5A	100.000	28	0	0	212	239	455524519	455524546	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G255600	chr2A	391355608	391358821	3213	True	5936	5936	100.000000	1	3214	1	chr2A.!!$R1	3213
1	TraesCS2A01G255600	chr2B	395807336	395809841	2505	False	3365	3365	91.156000	1	2507	1	chr2B.!!$F1	2506
2	TraesCS2A01G255600	chr2D	326348990	326351991	3001	False	1101	2519	92.627333	3	2507	3	chr2D.!!$F1	2504
3	TraesCS2A01G255600	chr1B	537325986	537326694	708	False	1254	1254	98.592000	2506	3214	1	chr1B.!!$F1	708
4	TraesCS2A01G255600	chr6B	134483584	134484291	707	False	1253	1253	98.590000	2506	3214	1	chr6B.!!$F1	708
5	TraesCS2A01G255600	chr7B	97964923	97965629	706	True	1251	1251	98.588000	2507	3214	1	chr7B.!!$R1	707
6	TraesCS2A01G255600	chr1A	528076216	528076733	517	True	907	907	98.263000	2697	3214	1	chr1A.!!$R1	517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
649	1241	0.036164	ACTTATCCAACTGCACCGCA	59.964	50.0	0.0	0.0	36.92	5.69	F
1255	1916	0.038067	CATGTGTACAACGTCCCCGA	60.038	55.0	0.0	0.0	37.88	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1916	2590	0.889306	AGTAAGGCGACTCAGGTGAC	59.111	55.000	0.00	0.0	42.68	3.67	R
2501	3176	1.202710	GCCCCAAACGTTTCCCAAAAT	60.203	47.619	11.37	0.0	0.00	1.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	0.794229	GACAAACGATGCATGCGGTG	60.794	55.000	14.09	12.24	0.00	4.94
50	51	3.003689	GCGGTGAGATGGTGGATTTATTG	59.996	47.826	0.00	0.00	0.00	1.90
192	193	1.338136	GCTTAGCCCAGGTGAGCCTA	61.338	60.000	0.00	0.00	44.97	3.93
193	194	1.204146	CTTAGCCCAGGTGAGCCTAA	58.796	55.000	0.00	0.00	44.97	2.69
194	195	1.139853	CTTAGCCCAGGTGAGCCTAAG	59.860	57.143	0.00	0.00	44.97	2.18
200	201	0.393537	CAGGTGAGCCTAAGCAAGGG	60.394	60.000	7.20	0.00	46.65	3.95
202	203	1.077429	GTGAGCCTAAGCAAGGGGG	60.077	63.158	7.20	0.00	46.65	5.40
215	216	0.786435	AAGGGGGAAAAGGCTCATGT	59.214	50.000	0.00	0.00	0.00	3.21
218	219	2.587307	AGGGGGAAAAGGCTCATGTATT	59.413	45.455	0.00	0.00	0.00	1.89
219	220	3.012844	AGGGGGAAAAGGCTCATGTATTT	59.987	43.478	0.00	0.00	0.00	1.40
220	221	3.384789	GGGGGAAAAGGCTCATGTATTTC	59.615	47.826	0.00	0.00	0.00	2.17
221	222	3.066760	GGGGAAAAGGCTCATGTATTTCG	59.933	47.826	0.00	0.00	32.23	3.46
222	223	3.066760	GGGAAAAGGCTCATGTATTTCGG	59.933	47.826	0.00	0.00	32.23	4.30
223	224	3.694566	GGAAAAGGCTCATGTATTTCGGT	59.305	43.478	0.00	0.00	32.23	4.69
224	225	4.879545	GGAAAAGGCTCATGTATTTCGGTA	59.120	41.667	0.00	0.00	32.23	4.02
225	226	5.220796	GGAAAAGGCTCATGTATTTCGGTAC	60.221	44.000	0.00	0.00	32.23	3.34
226	227	4.481368	AAGGCTCATGTATTTCGGTACA	57.519	40.909	0.00	0.00	38.79	2.90
227	228	4.060038	AGGCTCATGTATTTCGGTACAG	57.940	45.455	0.00	0.00	37.93	2.74
228	229	3.704566	AGGCTCATGTATTTCGGTACAGA	59.295	43.478	0.00	0.00	37.93	3.41
229	230	4.051922	GGCTCATGTATTTCGGTACAGAG	58.948	47.826	0.00	12.63	37.93	3.35
230	231	4.051922	GCTCATGTATTTCGGTACAGAGG	58.948	47.826	0.00	6.12	37.93	3.69
231	232	4.621991	CTCATGTATTTCGGTACAGAGGG	58.378	47.826	0.00	0.00	37.93	4.30
232	233	4.283337	TCATGTATTTCGGTACAGAGGGA	58.717	43.478	0.00	0.00	37.93	4.20
233	234	4.341235	TCATGTATTTCGGTACAGAGGGAG	59.659	45.833	0.00	0.00	37.93	4.30
243	244	3.318557	GGTACAGAGGGAGTAGTACATGC	59.681	52.174	2.52	0.00	38.78	4.06
517	540	1.400737	GAGCCAGTAGTCACGGGTAT	58.599	55.000	0.00	0.00	41.64	2.73
519	542	1.063867	AGCCAGTAGTCACGGGTATCT	60.064	52.381	0.00	0.00	41.64	1.98
521	544	2.933573	CCAGTAGTCACGGGTATCTCT	58.066	52.381	0.00	0.00	35.47	3.10
538	567	5.804944	ATCTCTCTCTCTCTCTCTCTCTG	57.195	47.826	0.00	0.00	0.00	3.35
649	1241	0.036164	ACTTATCCAACTGCACCGCA	59.964	50.000	0.00	0.00	36.92	5.69
710	1316	2.353579	CCGTTTGATCCGGTTATGGAAC	59.646	50.000	0.00	0.00	42.46	3.62
897	1503	1.878102	CGCAGGTAGCAACTGAAACCT	60.878	52.381	5.52	0.00	46.13	3.50
931	1537	4.787551	AGTCTATAGGGTGAGTCAGTGAG	58.212	47.826	0.00	0.00	0.00	3.51
932	1538	3.886505	GTCTATAGGGTGAGTCAGTGAGG	59.113	52.174	0.00	0.00	0.00	3.86
953	1568	2.863137	GAGAGCAGTAGCCAAATCTTCG	59.137	50.000	0.00	0.00	43.56	3.79
954	1569	2.497675	AGAGCAGTAGCCAAATCTTCGA	59.502	45.455	0.00	0.00	43.56	3.71
955	1570	3.055819	AGAGCAGTAGCCAAATCTTCGAA	60.056	43.478	0.00	0.00	43.56	3.71
956	1571	3.265791	AGCAGTAGCCAAATCTTCGAAG	58.734	45.455	19.35	19.35	43.56	3.79
1143	1771	4.262635	CCATCCGGGGTATATATGCATCTC	60.263	50.000	0.19	0.00	0.00	2.75
1253	1914	0.604243	TGCATGTGTACAACGTCCCC	60.604	55.000	0.00	0.00	0.00	4.81
1255	1916	0.038067	CATGTGTACAACGTCCCCGA	60.038	55.000	0.00	0.00	37.88	5.14
1263	1924	1.270947	ACAACGTCCCCGATTTGCTTA	60.271	47.619	0.00	0.00	37.88	3.09
1310	1971	1.606668	GTTCCAAGTCCATCGTTTGCA	59.393	47.619	0.00	0.00	0.00	4.08
1312	1973	2.302260	TCCAAGTCCATCGTTTGCAAA	58.698	42.857	8.05	8.05	0.00	3.68
1313	1974	2.690497	TCCAAGTCCATCGTTTGCAAAA	59.310	40.909	14.67	0.00	0.00	2.44
1314	1975	3.131223	TCCAAGTCCATCGTTTGCAAAAA	59.869	39.130	14.67	5.68	0.00	1.94
1354	2015	7.976175	CCAATAGGCTTTCTTTCATTTTCTACC	59.024	37.037	0.00	0.00	0.00	3.18
1361	2024	6.945938	TTCTTTCATTTTCTACCGGTTGAA	57.054	33.333	24.72	24.72	0.00	2.69
1520	2183	3.738399	TCAAACACGTGCGCATATAAAC	58.262	40.909	15.91	0.00	0.00	2.01
1597	2263	9.717942	AATCTACTCATTAGTTTATCCTCATGC	57.282	33.333	0.00	0.00	37.15	4.06
1598	2264	8.484214	TCTACTCATTAGTTTATCCTCATGCT	57.516	34.615	0.00	0.00	37.15	3.79
1599	2265	8.363390	TCTACTCATTAGTTTATCCTCATGCTG	58.637	37.037	0.00	0.00	37.15	4.41
1600	2266	6.893583	ACTCATTAGTTTATCCTCATGCTGT	58.106	36.000	0.00	0.00	29.00	4.40
1601	2267	6.989169	ACTCATTAGTTTATCCTCATGCTGTC	59.011	38.462	0.00	0.00	29.00	3.51
1602	2268	6.888105	TCATTAGTTTATCCTCATGCTGTCA	58.112	36.000	0.00	0.00	0.00	3.58
1603	2269	7.512130	TCATTAGTTTATCCTCATGCTGTCAT	58.488	34.615	0.00	0.00	0.00	3.06
1665	2333	2.430332	CAAAACAATGGACTGGTGGTGT	59.570	45.455	0.00	0.00	0.00	4.16
1666	2334	2.452600	AACAATGGACTGGTGGTGTT	57.547	45.000	0.00	0.00	0.00	3.32
1667	2335	3.586470	AACAATGGACTGGTGGTGTTA	57.414	42.857	0.00	0.00	0.00	2.41
1668	2336	3.806949	ACAATGGACTGGTGGTGTTAT	57.193	42.857	0.00	0.00	0.00	1.89
1669	2337	4.919774	ACAATGGACTGGTGGTGTTATA	57.080	40.909	0.00	0.00	0.00	0.98
1670	2338	4.585879	ACAATGGACTGGTGGTGTTATAC	58.414	43.478	0.00	0.00	0.00	1.47
1738	2410	4.437239	ACTATCAGAGGAGCATTTGTTCG	58.563	43.478	0.00	0.00	0.00	3.95
2004	2678	2.146342	CCGAATCTCAGCGGCAATATT	58.854	47.619	1.45	0.00	41.17	1.28
2054	2728	4.695231	AAGGACGACGGCGACACG	62.695	66.667	22.49	18.19	41.64	4.49
2110	2784	2.627217	GGTCCATCTCAACCTACCTCCT	60.627	54.545	0.00	0.00	32.54	3.69
2117	2791	3.264193	TCTCAACCTACCTCCTACGTACA	59.736	47.826	0.00	0.00	0.00	2.90
2127	2801	3.087031	CTCCTACGTACACTCCCTTTCA	58.913	50.000	0.00	0.00	0.00	2.69
2184	2858	3.208594	ACGTTTTGACTAACTGAACCCC	58.791	45.455	0.00	0.00	0.00	4.95
2227	2902	6.185511	TCTACTACTAGCACTAGCAGGAAAA	58.814	40.000	9.25	0.00	45.49	2.29
2360	3035	7.148672	CCAGCGATCATCAGCTTAACTAATTAG	60.149	40.741	11.05	11.05	42.52	1.73
2361	3036	7.383572	CAGCGATCATCAGCTTAACTAATTAGT	59.616	37.037	12.50	12.50	42.52	2.24
2362	3037	8.577296	AGCGATCATCAGCTTAACTAATTAGTA	58.423	33.333	18.31	3.34	41.52	1.82
2459	3134	5.500234	TGTGCTCTTGTAATATGCCTTCTT	58.500	37.500	0.00	0.00	0.00	2.52
2501	3176	2.929398	CGCTTGTATGTGTGTGCTATGA	59.071	45.455	0.00	0.00	0.00	2.15
2735	3410	2.771639	CCTCGCCGGATCTCGTTCA	61.772	63.158	5.05	0.00	37.11	3.18
3178	3855	2.238521	TCCCGCAGATGAAAAAGCTTT	58.761	42.857	5.69	5.69	0.00	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	3.140144	TCCCCCAATAAATCCACCATCTC	59.860	47.826	0.00	0.00	0.00	2.75
78	79	4.937015	CGTCAATGCATGTATATCCATCCA	59.063	41.667	0.00	0.00	0.00	3.41
191	192	0.783850	AGCCTTTTCCCCCTTGCTTA	59.216	50.000	0.00	0.00	0.00	3.09
192	193	0.542938	GAGCCTTTTCCCCCTTGCTT	60.543	55.000	0.00	0.00	0.00	3.91
193	194	1.077445	GAGCCTTTTCCCCCTTGCT	59.923	57.895	0.00	0.00	0.00	3.91
194	195	0.615827	ATGAGCCTTTTCCCCCTTGC	60.616	55.000	0.00	0.00	0.00	4.01
200	201	3.066760	CCGAAATACATGAGCCTTTTCCC	59.933	47.826	0.00	0.00	0.00	3.97
202	203	4.965119	ACCGAAATACATGAGCCTTTTC	57.035	40.909	0.00	0.68	0.00	2.29
215	216	5.121380	ACTACTCCCTCTGTACCGAAATA	57.879	43.478	0.00	0.00	0.00	1.40
218	219	3.264193	TGTACTACTCCCTCTGTACCGAA	59.736	47.826	0.00	0.00	35.68	4.30
219	220	2.840038	TGTACTACTCCCTCTGTACCGA	59.160	50.000	0.00	0.00	35.68	4.69
220	221	3.272574	TGTACTACTCCCTCTGTACCG	57.727	52.381	0.00	0.00	35.68	4.02
221	222	3.318557	GCATGTACTACTCCCTCTGTACC	59.681	52.174	0.00	0.00	35.68	3.34
222	223	3.952323	TGCATGTACTACTCCCTCTGTAC	59.048	47.826	0.00	0.00	36.69	2.90
223	224	4.245251	TGCATGTACTACTCCCTCTGTA	57.755	45.455	0.00	0.00	0.00	2.74
224	225	3.101643	TGCATGTACTACTCCCTCTGT	57.898	47.619	0.00	0.00	0.00	3.41
225	226	3.244009	CCATGCATGTACTACTCCCTCTG	60.244	52.174	24.58	0.87	0.00	3.35
226	227	2.968574	CCATGCATGTACTACTCCCTCT	59.031	50.000	24.58	0.00	0.00	3.69
227	228	2.965831	TCCATGCATGTACTACTCCCTC	59.034	50.000	24.58	0.00	0.00	4.30
228	229	3.046283	TCCATGCATGTACTACTCCCT	57.954	47.619	24.58	0.00	0.00	4.20
229	230	3.324846	TCATCCATGCATGTACTACTCCC	59.675	47.826	24.58	0.00	0.00	4.30
230	231	4.607293	TCATCCATGCATGTACTACTCC	57.393	45.455	24.58	0.00	0.00	3.85
231	232	5.464722	CAGTTCATCCATGCATGTACTACTC	59.535	44.000	24.58	9.71	33.85	2.59
232	233	5.363101	CAGTTCATCCATGCATGTACTACT	58.637	41.667	24.58	16.68	33.85	2.57
233	234	4.512944	CCAGTTCATCCATGCATGTACTAC	59.487	45.833	24.58	14.92	33.85	2.73
243	244	1.135112	TCGTCGTCCAGTTCATCCATG	60.135	52.381	0.00	0.00	0.00	3.66
517	540	4.871822	TCAGAGAGAGAGAGAGAGAGAGA	58.128	47.826	0.00	0.00	0.00	3.10
649	1241	1.077068	CACGAGAGAGAGGGAGGCT	60.077	63.158	0.00	0.00	0.00	4.58
650	1242	2.781158	GCACGAGAGAGAGGGAGGC	61.781	68.421	0.00	0.00	0.00	4.70
655	1261	0.805322	GTGCATGCACGAGAGAGAGG	60.805	60.000	33.20	0.00	37.19	3.69
710	1316	8.908903	AGAGTAGTTGTTCCAGAATCATACTAG	58.091	37.037	0.00	0.00	0.00	2.57
806	1412	4.344865	GGGCGGCTTGGGACTTGA	62.345	66.667	9.56	0.00	0.00	3.02
897	1503	2.885266	CCTATAGACTTGAGCTGGCGTA	59.115	50.000	0.00	0.00	0.00	4.42
931	1537	2.998316	AGATTTGGCTACTGCTCTCC	57.002	50.000	0.00	0.00	39.59	3.71
932	1538	2.863137	CGAAGATTTGGCTACTGCTCTC	59.137	50.000	0.00	0.00	39.59	3.20
953	1568	5.242171	GGATGGAGAGCTAACTAGGTACTTC	59.758	48.000	0.00	0.00	41.75	3.01
954	1569	5.103430	AGGATGGAGAGCTAACTAGGTACTT	60.103	44.000	0.00	0.00	41.75	2.24
955	1570	4.417518	AGGATGGAGAGCTAACTAGGTACT	59.582	45.833	0.00	0.00	46.37	2.73
956	1571	4.732065	AGGATGGAGAGCTAACTAGGTAC	58.268	47.826	0.00	0.00	33.58	3.34
1143	1771	5.522460	TCGAAGATTAAGCCGGAAAGTATTG	59.478	40.000	5.05	0.00	0.00	1.90
1253	1914	2.280628	GGGTGAGAGGTAAGCAAATCG	58.719	52.381	0.00	0.00	0.00	3.34
1255	1916	2.375174	TGTGGGTGAGAGGTAAGCAAAT	59.625	45.455	0.00	0.00	0.00	2.32
1263	1924	3.394606	AGTAATTTGTGTGGGTGAGAGGT	59.605	43.478	0.00	0.00	0.00	3.85
1509	2172	2.861935	ACGTACTGTGGTTTATATGCGC	59.138	45.455	0.00	0.00	0.00	6.09
1520	2183	8.013947	GTGACATACTACATATACGTACTGTGG	58.986	40.741	18.24	17.55	0.00	4.17
1549	2212	8.716779	AGATTACTAACTAGCTAGTCTGGTACT	58.283	37.037	26.21	19.85	42.62	2.73
1554	2217	9.767228	TGAGTAGATTACTAACTAGCTAGTCTG	57.233	37.037	26.21	21.78	39.59	3.51
1738	2410	3.241701	CCAAAAATATCACACACGTGCC	58.758	45.455	17.22	0.00	43.28	5.01
1805	2477	1.602377	GTCGCCTGCCATTACCAATAC	59.398	52.381	0.00	0.00	0.00	1.89
1859	2533	3.393800	CGACGATGATTTATTCCCAGCT	58.606	45.455	0.00	0.00	0.00	4.24
1916	2590	0.889306	AGTAAGGCGACTCAGGTGAC	59.111	55.000	0.00	0.00	42.68	3.67
2110	2784	6.594788	ACTTTATGAAAGGGAGTGTACGTA	57.405	37.500	4.13	0.00	42.82	3.57
2147	2821	5.854866	TCAAAACGTAGAGACAGTCAATACG	59.145	40.000	24.87	24.87	43.53	3.06
2148	2822	6.862090	AGTCAAAACGTAGAGACAGTCAATAC	59.138	38.462	14.14	4.40	33.56	1.89
2149	2823	6.978338	AGTCAAAACGTAGAGACAGTCAATA	58.022	36.000	14.14	0.00	33.56	1.90
2150	2824	5.844004	AGTCAAAACGTAGAGACAGTCAAT	58.156	37.500	14.14	0.00	33.56	2.57
2227	2902	2.233431	GCTCATCTCACACCAGTCTCTT	59.767	50.000	0.00	0.00	0.00	2.85
2360	3035	9.968870	AGCTCTAACATAACAGTAGCTTAATAC	57.031	33.333	0.00	0.00	35.39	1.89
2362	3037	9.319143	CAAGCTCTAACATAACAGTAGCTTAAT	57.681	33.333	6.37	0.00	44.58	1.40
2459	3134	4.542735	CGCACGACCATATATTAGTGTGA	58.457	43.478	11.59	0.00	41.06	3.58
2501	3176	1.202710	GCCCCAAACGTTTCCCAAAAT	60.203	47.619	11.37	0.00	0.00	1.82
3178	3855	4.943705	AGAAGCTTTTTCATCTGCGGAATA	59.056	37.500	0.00	0.00	0.00	1.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.