Multiple sequence alignment - TraesCS2A01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G255400 chr2A 100.000 4482 0 0 1 4482 390881318 390885799 0.000000e+00 8277.0
1 TraesCS2A01G255400 chr2D 96.380 3840 103 14 660 4482 326459547 326455727 0.000000e+00 6288.0
2 TraesCS2A01G255400 chr2D 96.000 50 1 1 309 357 326459595 326459546 3.720000e-11 80.5
3 TraesCS2A01G255400 chr2B 96.606 3771 98 12 726 4482 396193490 396189736 0.000000e+00 6228.0
4 TraesCS2A01G255400 chr7A 92.258 310 21 3 360 668 650868493 650868186 1.910000e-118 436.0
5 TraesCS2A01G255400 chr6A 91.803 305 24 1 357 660 539715012 539714708 1.490000e-114 424.0
6 TraesCS2A01G255400 chr6A 90.506 316 27 3 354 667 47892777 47892463 8.970000e-112 414.0
7 TraesCS2A01G255400 chr4A 91.111 315 24 4 353 663 275151025 275150711 1.490000e-114 424.0
8 TraesCS2A01G255400 chr4A 90.596 319 28 2 346 662 594659809 594659491 5.360000e-114 422.0
9 TraesCS2A01G255400 chr5A 91.531 307 25 1 357 662 537660208 537659902 5.360000e-114 422.0
10 TraesCS2A01G255400 chr5A 91.475 305 25 1 357 660 566643157 566643461 6.930000e-113 418.0
11 TraesCS2A01G255400 chr5A 92.500 40 2 1 150 188 338414454 338414415 6.260000e-04 56.5
12 TraesCS2A01G255400 chr3A 91.262 309 25 2 354 660 543016955 543017263 1.930000e-113 420.0
13 TraesCS2A01G255400 chr6D 89.058 329 32 4 357 683 153853255 153853581 5.400000e-109 405.0
14 TraesCS2A01G255400 chr5D 86.232 138 9 6 3631 3766 68893500 68893371 1.680000e-29 141.0
15 TraesCS2A01G255400 chr3D 100.000 29 0 0 150 178 33205062 33205090 2.000000e-03 54.7
16 TraesCS2A01G255400 chr1A 100.000 28 0 0 150 177 41904091 41904064 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G255400 chr2A 390881318 390885799 4481 False 8277.00 8277 100.000 1 4482 1 chr2A.!!$F1 4481
1 TraesCS2A01G255400 chr2D 326455727 326459595 3868 True 3184.25 6288 96.190 309 4482 2 chr2D.!!$R1 4173
2 TraesCS2A01G255400 chr2B 396189736 396193490 3754 True 6228.00 6228 96.606 726 4482 1 chr2B.!!$R1 3756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.035534 GCGGGGGCCATTTGATTTTT 60.036 50.000 4.39 0.0 0.00 1.94 F
180 181 0.106116 GTGGGACGGAGGGAGTAGAT 60.106 60.000 0.00 0.0 0.00 1.98 F
2049 2056 0.618458 TTATCACCTGGTGGCTGGTC 59.382 55.000 25.67 0.0 36.63 4.02 F
2819 2830 1.200948 GTTCAGATGCAAGGCCAGTTC 59.799 52.381 5.01 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 1727 0.467804 TGTACCTGCTGTGCTTGTGA 59.532 50.000 0.0 0.0 0.00 3.58 R
2137 2144 0.534412 CAAGCGAGGAGGATGACTGT 59.466 55.000 0.0 0.0 0.00 3.55 R
3147 3158 2.577563 TGGATCTGGAAAAGCTGGATCA 59.422 45.455 0.0 0.0 35.76 2.92 R
4052 4072 1.707427 AGAGATGGGCAGGAACAAAGT 59.293 47.619 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.935804 GTGTTCACACATTTGATTTTGTTTG 57.064 32.000 5.16 0.00 45.75 2.93
40 41 6.465465 GTGTTCACACATTTGATTTTGTTTGC 59.535 34.615 5.16 0.00 45.75 3.68
41 42 5.386810 TCACACATTTGATTTTGTTTGCG 57.613 34.783 0.00 0.00 0.00 4.85
42 43 4.269603 TCACACATTTGATTTTGTTTGCGG 59.730 37.500 0.00 0.00 0.00 5.69
43 44 3.559242 ACACATTTGATTTTGTTTGCGGG 59.441 39.130 0.00 0.00 0.00 6.13
44 45 3.059051 CACATTTGATTTTGTTTGCGGGG 60.059 43.478 0.00 0.00 0.00 5.73
45 46 2.246719 TTTGATTTTGTTTGCGGGGG 57.753 45.000 0.00 0.00 0.00 5.40
46 47 0.250081 TTGATTTTGTTTGCGGGGGC 60.250 50.000 0.00 0.00 0.00 5.80
47 48 1.375396 GATTTTGTTTGCGGGGGCC 60.375 57.895 0.00 0.00 0.00 5.80
48 49 2.105806 GATTTTGTTTGCGGGGGCCA 62.106 55.000 4.39 0.00 0.00 5.36
49 50 1.487850 ATTTTGTTTGCGGGGGCCAT 61.488 50.000 4.39 0.00 0.00 4.40
50 51 1.700042 TTTTGTTTGCGGGGGCCATT 61.700 50.000 4.39 0.00 0.00 3.16
51 52 1.700042 TTTGTTTGCGGGGGCCATTT 61.700 50.000 4.39 0.00 0.00 2.32
52 53 2.047370 GTTTGCGGGGGCCATTTG 60.047 61.111 4.39 0.00 0.00 2.32
53 54 2.203699 TTTGCGGGGGCCATTTGA 60.204 55.556 4.39 0.00 0.00 2.69
54 55 1.611851 TTTGCGGGGGCCATTTGAT 60.612 52.632 4.39 0.00 0.00 2.57
55 56 1.197430 TTTGCGGGGGCCATTTGATT 61.197 50.000 4.39 0.00 0.00 2.57
56 57 1.197430 TTGCGGGGGCCATTTGATTT 61.197 50.000 4.39 0.00 0.00 2.17
57 58 1.197430 TGCGGGGGCCATTTGATTTT 61.197 50.000 4.39 0.00 0.00 1.82
58 59 0.035534 GCGGGGGCCATTTGATTTTT 60.036 50.000 4.39 0.00 0.00 1.94
118 119 9.614792 AAAAGTTCATATACAATCACTACCTCC 57.385 33.333 0.00 0.00 0.00 4.30
119 120 6.982852 AGTTCATATACAATCACTACCTCCG 58.017 40.000 0.00 0.00 0.00 4.63
120 121 6.550108 AGTTCATATACAATCACTACCTCCGT 59.450 38.462 0.00 0.00 0.00 4.69
121 122 6.570672 TCATATACAATCACTACCTCCGTC 57.429 41.667 0.00 0.00 0.00 4.79
122 123 5.475909 TCATATACAATCACTACCTCCGTCC 59.524 44.000 0.00 0.00 0.00 4.79
123 124 1.192428 ACAATCACTACCTCCGTCCC 58.808 55.000 0.00 0.00 0.00 4.46
124 125 1.191535 CAATCACTACCTCCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
125 126 1.134788 CAATCACTACCTCCGTCCCAC 60.135 57.143 0.00 0.00 0.00 4.61
126 127 0.335361 ATCACTACCTCCGTCCCACT 59.665 55.000 0.00 0.00 0.00 4.00
127 128 0.994247 TCACTACCTCCGTCCCACTA 59.006 55.000 0.00 0.00 0.00 2.74
128 129 1.567649 TCACTACCTCCGTCCCACTAT 59.432 52.381 0.00 0.00 0.00 2.12
129 130 2.779430 TCACTACCTCCGTCCCACTATA 59.221 50.000 0.00 0.00 0.00 1.31
130 131 3.396946 TCACTACCTCCGTCCCACTATAT 59.603 47.826 0.00 0.00 0.00 0.86
131 132 4.598807 TCACTACCTCCGTCCCACTATATA 59.401 45.833 0.00 0.00 0.00 0.86
132 133 5.073554 TCACTACCTCCGTCCCACTATATAA 59.926 44.000 0.00 0.00 0.00 0.98
133 134 5.415077 CACTACCTCCGTCCCACTATATAAG 59.585 48.000 0.00 0.00 0.00 1.73
134 135 4.736611 ACCTCCGTCCCACTATATAAGA 57.263 45.455 0.00 0.00 0.00 2.10
135 136 4.405548 ACCTCCGTCCCACTATATAAGAC 58.594 47.826 0.00 0.00 0.00 3.01
136 137 3.762823 CCTCCGTCCCACTATATAAGACC 59.237 52.174 0.00 0.00 0.00 3.85
137 138 3.762823 CTCCGTCCCACTATATAAGACCC 59.237 52.174 0.00 0.00 0.00 4.46
138 139 3.400322 TCCGTCCCACTATATAAGACCCT 59.600 47.826 0.00 0.00 0.00 4.34
139 140 4.140853 TCCGTCCCACTATATAAGACCCTT 60.141 45.833 0.00 0.00 0.00 3.95
140 141 4.591924 CCGTCCCACTATATAAGACCCTTT 59.408 45.833 0.00 0.00 0.00 3.11
141 142 5.071384 CCGTCCCACTATATAAGACCCTTTT 59.929 44.000 0.00 0.00 0.00 2.27
142 143 5.989777 CGTCCCACTATATAAGACCCTTTTG 59.010 44.000 0.00 0.00 0.00 2.44
143 144 5.763698 GTCCCACTATATAAGACCCTTTTGC 59.236 44.000 0.00 0.00 0.00 3.68
144 145 5.430417 TCCCACTATATAAGACCCTTTTGCA 59.570 40.000 0.00 0.00 0.00 4.08
145 146 6.069323 TCCCACTATATAAGACCCTTTTGCAA 60.069 38.462 0.00 0.00 0.00 4.08
146 147 6.263168 CCCACTATATAAGACCCTTTTGCAAG 59.737 42.308 0.00 0.00 0.00 4.01
147 148 6.238759 CCACTATATAAGACCCTTTTGCAAGC 60.239 42.308 0.00 0.00 0.00 4.01
148 149 6.543831 CACTATATAAGACCCTTTTGCAAGCT 59.456 38.462 0.00 0.00 0.00 3.74
149 150 7.715249 CACTATATAAGACCCTTTTGCAAGCTA 59.285 37.037 0.00 0.00 0.00 3.32
150 151 6.944234 ATATAAGACCCTTTTGCAAGCTAC 57.056 37.500 0.00 0.00 0.00 3.58
151 152 1.523758 AGACCCTTTTGCAAGCTACG 58.476 50.000 0.00 0.00 0.00 3.51
152 153 1.202770 AGACCCTTTTGCAAGCTACGT 60.203 47.619 0.00 0.00 0.00 3.57
153 154 1.197036 GACCCTTTTGCAAGCTACGTC 59.803 52.381 0.00 0.00 0.00 4.34
154 155 1.202770 ACCCTTTTGCAAGCTACGTCT 60.203 47.619 0.00 0.00 0.00 4.18
155 156 1.880027 CCCTTTTGCAAGCTACGTCTT 59.120 47.619 0.00 0.00 0.00 3.01
156 157 3.071479 CCCTTTTGCAAGCTACGTCTTA 58.929 45.455 0.00 0.00 0.00 2.10
157 158 3.689649 CCCTTTTGCAAGCTACGTCTTAT 59.310 43.478 0.00 0.00 0.00 1.73
158 159 4.873827 CCCTTTTGCAAGCTACGTCTTATA 59.126 41.667 0.00 0.00 0.00 0.98
159 160 5.527582 CCCTTTTGCAAGCTACGTCTTATAT 59.472 40.000 0.00 0.00 0.00 0.86
160 161 6.292919 CCCTTTTGCAAGCTACGTCTTATATC 60.293 42.308 0.00 0.00 0.00 1.63
161 162 5.883328 TTTGCAAGCTACGTCTTATATCG 57.117 39.130 0.00 0.00 0.00 2.92
162 163 4.563337 TGCAAGCTACGTCTTATATCGT 57.437 40.909 0.00 0.00 42.82 3.73
163 164 4.287720 TGCAAGCTACGTCTTATATCGTG 58.712 43.478 0.00 0.00 40.50 4.35
164 165 3.669122 GCAAGCTACGTCTTATATCGTGG 59.331 47.826 0.00 0.00 40.50 4.94
165 166 4.227538 CAAGCTACGTCTTATATCGTGGG 58.772 47.826 0.00 0.00 40.50 4.61
166 167 3.748083 AGCTACGTCTTATATCGTGGGA 58.252 45.455 0.00 0.00 40.50 4.37
167 168 3.501445 AGCTACGTCTTATATCGTGGGAC 59.499 47.826 0.00 0.00 40.50 4.46
169 170 2.327081 CGTCTTATATCGTGGGACGG 57.673 55.000 0.00 0.00 43.69 4.79
170 171 1.875514 CGTCTTATATCGTGGGACGGA 59.124 52.381 0.00 0.00 43.69 4.69
171 172 2.095869 CGTCTTATATCGTGGGACGGAG 60.096 54.545 0.00 0.00 43.69 4.63
172 173 2.228343 GTCTTATATCGTGGGACGGAGG 59.772 54.545 0.00 0.00 42.81 4.30
173 174 1.544691 CTTATATCGTGGGACGGAGGG 59.455 57.143 0.00 0.00 42.81 4.30
174 175 0.773014 TATATCGTGGGACGGAGGGA 59.227 55.000 0.00 0.00 42.81 4.20
175 176 0.539901 ATATCGTGGGACGGAGGGAG 60.540 60.000 0.00 0.00 42.81 4.30
176 177 1.929860 TATCGTGGGACGGAGGGAGT 61.930 60.000 0.00 0.00 42.81 3.85
177 178 1.929860 ATCGTGGGACGGAGGGAGTA 61.930 60.000 0.00 0.00 42.81 2.59
178 179 2.119655 CGTGGGACGGAGGGAGTAG 61.120 68.421 0.00 0.00 38.08 2.57
179 180 1.305623 GTGGGACGGAGGGAGTAGA 59.694 63.158 0.00 0.00 0.00 2.59
180 181 0.106116 GTGGGACGGAGGGAGTAGAT 60.106 60.000 0.00 0.00 0.00 1.98
181 182 0.635009 TGGGACGGAGGGAGTAGATT 59.365 55.000 0.00 0.00 0.00 2.40
182 183 1.330234 GGGACGGAGGGAGTAGATTC 58.670 60.000 0.00 0.00 0.00 2.52
183 184 1.411216 GGGACGGAGGGAGTAGATTCA 60.411 57.143 0.00 0.00 0.00 2.57
184 185 2.599677 GGACGGAGGGAGTAGATTCAT 58.400 52.381 0.00 0.00 0.00 2.57
185 186 2.966516 GGACGGAGGGAGTAGATTCATT 59.033 50.000 0.00 0.00 0.00 2.57
186 187 3.388350 GGACGGAGGGAGTAGATTCATTT 59.612 47.826 0.00 0.00 0.00 2.32
187 188 4.501743 GGACGGAGGGAGTAGATTCATTTC 60.502 50.000 0.00 0.00 0.00 2.17
188 189 4.030913 ACGGAGGGAGTAGATTCATTTCA 58.969 43.478 0.00 0.00 0.00 2.69
189 190 4.656112 ACGGAGGGAGTAGATTCATTTCAT 59.344 41.667 0.00 0.00 0.00 2.57
190 191 5.839063 ACGGAGGGAGTAGATTCATTTCATA 59.161 40.000 0.00 0.00 0.00 2.15
191 192 6.159988 CGGAGGGAGTAGATTCATTTCATAC 58.840 44.000 0.00 0.00 0.00 2.39
192 193 6.239317 CGGAGGGAGTAGATTCATTTCATACA 60.239 42.308 0.00 0.00 0.00 2.29
193 194 7.158021 GGAGGGAGTAGATTCATTTCATACAG 58.842 42.308 0.00 0.00 0.00 2.74
194 195 7.202047 GGAGGGAGTAGATTCATTTCATACAGT 60.202 40.741 0.00 0.00 0.00 3.55
195 196 8.095452 AGGGAGTAGATTCATTTCATACAGTT 57.905 34.615 0.00 0.00 0.00 3.16
196 197 8.552296 AGGGAGTAGATTCATTTCATACAGTTT 58.448 33.333 0.00 0.00 0.00 2.66
197 198 9.178758 GGGAGTAGATTCATTTCATACAGTTTT 57.821 33.333 0.00 0.00 0.00 2.43
198 199 9.994432 GGAGTAGATTCATTTCATACAGTTTTG 57.006 33.333 0.00 0.00 0.00 2.44
199 200 9.495754 GAGTAGATTCATTTCATACAGTTTTGC 57.504 33.333 0.00 0.00 0.00 3.68
200 201 9.013229 AGTAGATTCATTTCATACAGTTTTGCA 57.987 29.630 0.00 0.00 0.00 4.08
201 202 9.624697 GTAGATTCATTTCATACAGTTTTGCAA 57.375 29.630 0.00 0.00 0.00 4.08
203 204 9.545105 AGATTCATTTCATACAGTTTTGCAAAA 57.455 25.926 20.46 20.46 0.00 2.44
206 207 8.659925 TCATTTCATACAGTTTTGCAAAATGT 57.340 26.923 26.24 26.99 35.45 2.71
207 208 9.107177 TCATTTCATACAGTTTTGCAAAATGTT 57.893 25.926 28.51 19.09 35.45 2.71
208 209 9.160576 CATTTCATACAGTTTTGCAAAATGTTG 57.839 29.630 28.51 25.35 37.83 3.33
209 210 8.484641 TTTCATACAGTTTTGCAAAATGTTGA 57.515 26.923 28.51 25.98 36.83 3.18
210 211 7.462109 TCATACAGTTTTGCAAAATGTTGAC 57.538 32.000 28.51 18.13 36.83 3.18
211 212 7.264221 TCATACAGTTTTGCAAAATGTTGACT 58.736 30.769 28.51 19.60 36.83 3.41
212 213 5.783100 ACAGTTTTGCAAAATGTTGACTG 57.217 34.783 26.47 26.47 39.77 3.51
213 214 5.237048 ACAGTTTTGCAAAATGTTGACTGT 58.763 33.333 27.44 27.44 41.05 3.55
214 215 6.393990 ACAGTTTTGCAAAATGTTGACTGTA 58.606 32.000 29.91 5.67 42.64 2.74
215 216 7.041107 ACAGTTTTGCAAAATGTTGACTGTAT 58.959 30.769 29.91 15.63 42.64 2.29
216 217 8.194104 ACAGTTTTGCAAAATGTTGACTGTATA 58.806 29.630 29.91 5.11 42.64 1.47
217 218 8.479280 CAGTTTTGCAAAATGTTGACTGTATAC 58.521 33.333 26.24 9.92 36.83 1.47
218 219 7.651704 AGTTTTGCAAAATGTTGACTGTATACC 59.348 33.333 26.24 8.59 36.83 2.73
219 220 5.637006 TGCAAAATGTTGACTGTATACCC 57.363 39.130 0.00 0.00 36.83 3.69
220 221 4.461081 TGCAAAATGTTGACTGTATACCCC 59.539 41.667 0.00 0.00 36.83 4.95
221 222 4.142249 GCAAAATGTTGACTGTATACCCCC 60.142 45.833 0.00 0.00 36.83 5.40
222 223 4.938575 AAATGTTGACTGTATACCCCCA 57.061 40.909 0.00 0.00 0.00 4.96
223 224 4.938575 AATGTTGACTGTATACCCCCAA 57.061 40.909 0.00 0.00 0.00 4.12
224 225 3.992943 TGTTGACTGTATACCCCCAAG 57.007 47.619 0.00 0.00 0.00 3.61
225 226 3.522759 TGTTGACTGTATACCCCCAAGA 58.477 45.455 0.00 0.00 0.00 3.02
226 227 3.911260 TGTTGACTGTATACCCCCAAGAA 59.089 43.478 0.00 0.00 0.00 2.52
227 228 4.351407 TGTTGACTGTATACCCCCAAGAAA 59.649 41.667 0.00 0.00 0.00 2.52
228 229 4.837093 TGACTGTATACCCCCAAGAAAG 57.163 45.455 0.00 0.00 0.00 2.62
229 230 4.172807 TGACTGTATACCCCCAAGAAAGT 58.827 43.478 0.00 0.00 0.00 2.66
230 231 4.019681 TGACTGTATACCCCCAAGAAAGTG 60.020 45.833 0.00 0.00 0.00 3.16
231 232 4.172807 ACTGTATACCCCCAAGAAAGTGA 58.827 43.478 0.00 0.00 0.00 3.41
232 233 4.600111 ACTGTATACCCCCAAGAAAGTGAA 59.400 41.667 0.00 0.00 0.00 3.18
233 234 5.073965 ACTGTATACCCCCAAGAAAGTGAAA 59.926 40.000 0.00 0.00 0.00 2.69
234 235 5.318630 TGTATACCCCCAAGAAAGTGAAAC 58.681 41.667 0.00 0.00 0.00 2.78
235 236 2.082140 ACCCCCAAGAAAGTGAAACC 57.918 50.000 0.00 0.00 37.80 3.27
236 237 1.289530 ACCCCCAAGAAAGTGAAACCA 59.710 47.619 0.00 0.00 37.80 3.67
237 238 2.090775 ACCCCCAAGAAAGTGAAACCAT 60.091 45.455 0.00 0.00 37.80 3.55
238 239 3.141272 ACCCCCAAGAAAGTGAAACCATA 59.859 43.478 0.00 0.00 37.80 2.74
239 240 4.156477 CCCCCAAGAAAGTGAAACCATAA 58.844 43.478 0.00 0.00 37.80 1.90
240 241 4.591072 CCCCCAAGAAAGTGAAACCATAAA 59.409 41.667 0.00 0.00 37.80 1.40
241 242 5.279456 CCCCCAAGAAAGTGAAACCATAAAG 60.279 44.000 0.00 0.00 37.80 1.85
242 243 5.304357 CCCCAAGAAAGTGAAACCATAAAGT 59.696 40.000 0.00 0.00 37.80 2.66
243 244 6.492087 CCCCAAGAAAGTGAAACCATAAAGTA 59.508 38.462 0.00 0.00 37.80 2.24
244 245 7.014808 CCCCAAGAAAGTGAAACCATAAAGTAA 59.985 37.037 0.00 0.00 37.80 2.24
245 246 8.417884 CCCAAGAAAGTGAAACCATAAAGTAAA 58.582 33.333 0.00 0.00 37.80 2.01
246 247 9.981114 CCAAGAAAGTGAAACCATAAAGTAAAT 57.019 29.630 0.00 0.00 37.80 1.40
270 271 9.810545 AATAAAAACGAAAATGAAGGAACAAGA 57.189 25.926 0.00 0.00 0.00 3.02
271 272 9.810545 ATAAAAACGAAAATGAAGGAACAAGAA 57.189 25.926 0.00 0.00 0.00 2.52
272 273 8.541133 AAAAACGAAAATGAAGGAACAAGAAA 57.459 26.923 0.00 0.00 0.00 2.52
273 274 8.541133 AAAACGAAAATGAAGGAACAAGAAAA 57.459 26.923 0.00 0.00 0.00 2.29
274 275 8.541133 AAACGAAAATGAAGGAACAAGAAAAA 57.459 26.923 0.00 0.00 0.00 1.94
345 346 7.039223 GCCCATGTAGGAGTACTAAGCTTTATA 60.039 40.741 3.20 0.00 41.22 0.98
361 362 6.255596 GCTTTATAGCAACTAATTAGGGCC 57.744 41.667 21.02 0.00 46.95 5.80
362 363 6.004574 GCTTTATAGCAACTAATTAGGGCCT 58.995 40.000 21.02 12.58 46.95 5.19
363 364 6.149640 GCTTTATAGCAACTAATTAGGGCCTC 59.850 42.308 10.74 0.00 46.95 4.70
364 365 7.388638 TTTATAGCAACTAATTAGGGCCTCT 57.611 36.000 10.74 0.00 0.00 3.69
365 366 5.913946 ATAGCAACTAATTAGGGCCTCTT 57.086 39.130 10.74 8.03 0.00 2.85
366 367 4.592997 AGCAACTAATTAGGGCCTCTTT 57.407 40.909 10.74 7.81 0.00 2.52
367 368 5.710409 AGCAACTAATTAGGGCCTCTTTA 57.290 39.130 10.74 8.65 0.00 1.85
368 369 6.074698 AGCAACTAATTAGGGCCTCTTTAA 57.925 37.500 10.74 0.00 0.00 1.52
369 370 6.673583 AGCAACTAATTAGGGCCTCTTTAAT 58.326 36.000 10.74 0.15 0.00 1.40
370 371 7.126061 AGCAACTAATTAGGGCCTCTTTAATT 58.874 34.615 10.74 13.34 33.13 1.40
371 372 7.285629 AGCAACTAATTAGGGCCTCTTTAATTC 59.714 37.037 10.74 0.00 31.50 2.17
372 373 7.639945 CAACTAATTAGGGCCTCTTTAATTCG 58.360 38.462 10.74 9.31 31.50 3.34
373 374 5.763698 ACTAATTAGGGCCTCTTTAATTCGC 59.236 40.000 10.74 0.00 31.50 4.70
374 375 3.637911 TTAGGGCCTCTTTAATTCGCA 57.362 42.857 10.74 0.00 0.00 5.10
375 376 2.736670 AGGGCCTCTTTAATTCGCAT 57.263 45.000 0.00 0.00 0.00 4.73
376 377 2.301346 AGGGCCTCTTTAATTCGCATG 58.699 47.619 0.00 0.00 0.00 4.06
377 378 2.092429 AGGGCCTCTTTAATTCGCATGA 60.092 45.455 0.00 0.00 0.00 3.07
378 379 2.887152 GGGCCTCTTTAATTCGCATGAT 59.113 45.455 0.84 0.00 0.00 2.45
379 380 3.319122 GGGCCTCTTTAATTCGCATGATT 59.681 43.478 0.84 0.00 0.00 2.57
380 381 4.293415 GGCCTCTTTAATTCGCATGATTG 58.707 43.478 0.00 0.00 0.00 2.67
381 382 4.202050 GGCCTCTTTAATTCGCATGATTGT 60.202 41.667 0.00 0.00 0.00 2.71
382 383 4.972440 GCCTCTTTAATTCGCATGATTGTC 59.028 41.667 0.00 0.00 0.00 3.18
383 384 5.449041 GCCTCTTTAATTCGCATGATTGTCA 60.449 40.000 0.00 0.00 0.00 3.58
384 385 6.554419 CCTCTTTAATTCGCATGATTGTCAA 58.446 36.000 0.00 0.00 0.00 3.18
385 386 7.028962 CCTCTTTAATTCGCATGATTGTCAAA 58.971 34.615 0.00 0.00 0.00 2.69
386 387 7.541783 CCTCTTTAATTCGCATGATTGTCAAAA 59.458 33.333 0.00 0.00 0.00 2.44
387 388 8.984891 TCTTTAATTCGCATGATTGTCAAAAT 57.015 26.923 0.00 0.00 0.00 1.82
388 389 8.862074 TCTTTAATTCGCATGATTGTCAAAATG 58.138 29.630 0.00 7.08 0.00 2.32
389 390 8.754230 TTTAATTCGCATGATTGTCAAAATGA 57.246 26.923 13.23 0.00 0.00 2.57
390 391 8.754230 TTAATTCGCATGATTGTCAAAATGAA 57.246 26.923 13.23 3.34 0.00 2.57
391 392 7.655236 AATTCGCATGATTGTCAAAATGAAA 57.345 28.000 13.23 8.20 0.00 2.69
392 393 6.693761 TTCGCATGATTGTCAAAATGAAAG 57.306 33.333 13.23 6.09 0.00 2.62
393 394 6.011476 TCGCATGATTGTCAAAATGAAAGA 57.989 33.333 13.23 7.69 0.00 2.52
394 395 6.445475 TCGCATGATTGTCAAAATGAAAGAA 58.555 32.000 13.23 0.00 0.00 2.52
395 396 7.092079 TCGCATGATTGTCAAAATGAAAGAAT 58.908 30.769 13.23 0.00 0.00 2.40
396 397 8.242739 TCGCATGATTGTCAAAATGAAAGAATA 58.757 29.630 13.23 0.00 0.00 1.75
397 398 8.529102 CGCATGATTGTCAAAATGAAAGAATAG 58.471 33.333 13.23 0.00 0.00 1.73
398 399 8.814235 GCATGATTGTCAAAATGAAAGAATAGG 58.186 33.333 13.23 0.00 0.00 2.57
407 408 9.775854 TCAAAATGAAAGAATAGGAAAAATGCA 57.224 25.926 0.00 0.00 0.00 3.96
418 419 9.688592 GAATAGGAAAAATGCAGAATAGAATGG 57.311 33.333 0.00 0.00 0.00 3.16
419 420 5.910614 AGGAAAAATGCAGAATAGAATGGC 58.089 37.500 0.00 0.00 0.00 4.40
420 421 5.422970 AGGAAAAATGCAGAATAGAATGGCA 59.577 36.000 0.00 0.00 39.03 4.92
421 422 6.099269 AGGAAAAATGCAGAATAGAATGGCAT 59.901 34.615 0.00 0.00 46.30 4.40
422 423 6.202188 GGAAAAATGCAGAATAGAATGGCATG 59.798 38.462 0.00 0.00 43.80 4.06
423 424 5.864418 AAATGCAGAATAGAATGGCATGT 57.136 34.783 0.00 0.00 43.80 3.21
424 425 5.449107 AATGCAGAATAGAATGGCATGTC 57.551 39.130 0.00 1.02 43.80 3.06
425 426 3.216800 TGCAGAATAGAATGGCATGTCC 58.783 45.455 0.00 0.00 0.00 4.02
426 427 3.117776 TGCAGAATAGAATGGCATGTCCT 60.118 43.478 0.00 1.52 35.26 3.85
427 428 4.102996 TGCAGAATAGAATGGCATGTCCTA 59.897 41.667 0.00 3.91 35.26 2.94
428 429 5.221986 TGCAGAATAGAATGGCATGTCCTAT 60.222 40.000 0.00 6.15 35.26 2.57
429 430 6.013466 TGCAGAATAGAATGGCATGTCCTATA 60.013 38.462 0.00 0.00 35.26 1.31
430 431 6.538021 GCAGAATAGAATGGCATGTCCTATAG 59.462 42.308 0.00 0.00 35.26 1.31
431 432 7.619050 CAGAATAGAATGGCATGTCCTATAGT 58.381 38.462 0.00 0.00 35.26 2.12
432 433 8.753133 CAGAATAGAATGGCATGTCCTATAGTA 58.247 37.037 0.00 0.00 35.26 1.82
433 434 9.499369 AGAATAGAATGGCATGTCCTATAGTAT 57.501 33.333 0.00 0.00 35.26 2.12
434 435 9.757227 GAATAGAATGGCATGTCCTATAGTATC 57.243 37.037 0.00 0.72 35.26 2.24
435 436 6.552445 AGAATGGCATGTCCTATAGTATCC 57.448 41.667 0.00 0.00 35.26 2.59
436 437 6.267635 AGAATGGCATGTCCTATAGTATCCT 58.732 40.000 0.00 0.00 35.26 3.24
437 438 7.422512 AGAATGGCATGTCCTATAGTATCCTA 58.577 38.462 0.00 0.00 35.26 2.94
438 439 7.343316 AGAATGGCATGTCCTATAGTATCCTAC 59.657 40.741 0.00 0.00 35.26 3.18
439 440 5.899278 TGGCATGTCCTATAGTATCCTACA 58.101 41.667 0.00 0.00 35.26 2.74
440 441 5.952347 TGGCATGTCCTATAGTATCCTACAG 59.048 44.000 0.00 0.00 35.26 2.74
441 442 5.361285 GGCATGTCCTATAGTATCCTACAGG 59.639 48.000 0.00 0.00 38.94 4.00
442 443 6.188407 GCATGTCCTATAGTATCCTACAGGA 58.812 44.000 0.00 0.00 43.20 3.86
443 444 6.836527 GCATGTCCTATAGTATCCTACAGGAT 59.163 42.308 14.99 14.99 46.11 3.24
458 459 7.885297 TCCTACAGGATTTGAAAGAATGTTTG 58.115 34.615 0.00 0.00 39.78 2.93
459 460 7.723616 TCCTACAGGATTTGAAAGAATGTTTGA 59.276 33.333 0.00 0.00 39.78 2.69
460 461 8.526147 CCTACAGGATTTGAAAGAATGTTTGAT 58.474 33.333 0.00 0.00 37.39 2.57
463 464 8.031277 ACAGGATTTGAAAGAATGTTTGATAGC 58.969 33.333 0.00 0.00 0.00 2.97
464 465 8.030692 CAGGATTTGAAAGAATGTTTGATAGCA 58.969 33.333 0.00 0.00 0.00 3.49
465 466 8.031277 AGGATTTGAAAGAATGTTTGATAGCAC 58.969 33.333 0.00 0.00 0.00 4.40
466 467 7.008628 GGATTTGAAAGAATGTTTGATAGCACG 59.991 37.037 0.00 0.00 0.00 5.34
467 468 5.295431 TGAAAGAATGTTTGATAGCACGG 57.705 39.130 0.00 0.00 0.00 4.94
468 469 4.155826 TGAAAGAATGTTTGATAGCACGGG 59.844 41.667 0.00 0.00 0.00 5.28
469 470 3.627395 AGAATGTTTGATAGCACGGGA 57.373 42.857 0.00 0.00 0.00 5.14
470 471 3.950397 AGAATGTTTGATAGCACGGGAA 58.050 40.909 0.00 0.00 0.00 3.97
471 472 4.331968 AGAATGTTTGATAGCACGGGAAA 58.668 39.130 0.00 0.00 0.00 3.13
472 473 4.764823 AGAATGTTTGATAGCACGGGAAAA 59.235 37.500 0.00 0.00 0.00 2.29
473 474 5.242838 AGAATGTTTGATAGCACGGGAAAAA 59.757 36.000 0.00 0.00 0.00 1.94
474 475 4.231718 TGTTTGATAGCACGGGAAAAAC 57.768 40.909 0.00 0.00 0.00 2.43
475 476 3.632604 TGTTTGATAGCACGGGAAAAACA 59.367 39.130 0.00 0.00 34.62 2.83
476 477 4.098044 TGTTTGATAGCACGGGAAAAACAA 59.902 37.500 0.00 0.00 34.22 2.83
477 478 4.920640 TTGATAGCACGGGAAAAACAAA 57.079 36.364 0.00 0.00 0.00 2.83
478 479 4.497473 TGATAGCACGGGAAAAACAAAG 57.503 40.909 0.00 0.00 0.00 2.77
479 480 4.138290 TGATAGCACGGGAAAAACAAAGA 58.862 39.130 0.00 0.00 0.00 2.52
480 481 4.580995 TGATAGCACGGGAAAAACAAAGAA 59.419 37.500 0.00 0.00 0.00 2.52
481 482 3.878160 AGCACGGGAAAAACAAAGAAA 57.122 38.095 0.00 0.00 0.00 2.52
482 483 4.400529 AGCACGGGAAAAACAAAGAAAT 57.599 36.364 0.00 0.00 0.00 2.17
483 484 4.765273 AGCACGGGAAAAACAAAGAAATT 58.235 34.783 0.00 0.00 0.00 1.82
484 485 4.808895 AGCACGGGAAAAACAAAGAAATTC 59.191 37.500 0.00 0.00 0.00 2.17
485 486 4.808895 GCACGGGAAAAACAAAGAAATTCT 59.191 37.500 0.00 0.00 0.00 2.40
486 487 5.980715 GCACGGGAAAAACAAAGAAATTCTA 59.019 36.000 0.00 0.00 0.00 2.10
487 488 6.074516 GCACGGGAAAAACAAAGAAATTCTAC 60.075 38.462 0.00 0.00 0.00 2.59
488 489 6.975772 CACGGGAAAAACAAAGAAATTCTACA 59.024 34.615 0.00 0.00 0.00 2.74
489 490 7.489757 CACGGGAAAAACAAAGAAATTCTACAA 59.510 33.333 0.00 0.00 0.00 2.41
490 491 8.035984 ACGGGAAAAACAAAGAAATTCTACAAA 58.964 29.630 0.00 0.00 0.00 2.83
491 492 8.539674 CGGGAAAAACAAAGAAATTCTACAAAG 58.460 33.333 0.00 0.00 0.00 2.77
492 493 9.594478 GGGAAAAACAAAGAAATTCTACAAAGA 57.406 29.630 0.00 0.00 0.00 2.52
499 500 8.966868 ACAAAGAAATTCTACAAAGAGGTTTGA 58.033 29.630 0.00 0.00 45.22 2.69
500 501 9.455847 CAAAGAAATTCTACAAAGAGGTTTGAG 57.544 33.333 0.00 0.00 45.22 3.02
501 502 8.753497 AAGAAATTCTACAAAGAGGTTTGAGT 57.247 30.769 0.00 0.00 45.22 3.41
502 503 8.159344 AGAAATTCTACAAAGAGGTTTGAGTG 57.841 34.615 4.91 0.00 45.22 3.51
503 504 6.884280 AATTCTACAAAGAGGTTTGAGTGG 57.116 37.500 4.91 0.00 45.22 4.00
504 505 5.623956 TTCTACAAAGAGGTTTGAGTGGA 57.376 39.130 4.91 0.00 45.22 4.02
505 506 5.825593 TCTACAAAGAGGTTTGAGTGGAT 57.174 39.130 4.91 0.00 45.22 3.41
506 507 5.551233 TCTACAAAGAGGTTTGAGTGGATG 58.449 41.667 4.91 0.00 45.22 3.51
507 508 3.490348 ACAAAGAGGTTTGAGTGGATGG 58.510 45.455 4.91 0.00 45.22 3.51
508 509 3.138283 ACAAAGAGGTTTGAGTGGATGGA 59.862 43.478 4.91 0.00 45.22 3.41
509 510 4.144297 CAAAGAGGTTTGAGTGGATGGAA 58.856 43.478 0.00 0.00 45.22 3.53
510 511 4.453480 AAGAGGTTTGAGTGGATGGAAA 57.547 40.909 0.00 0.00 0.00 3.13
511 512 4.664688 AGAGGTTTGAGTGGATGGAAAT 57.335 40.909 0.00 0.00 0.00 2.17
512 513 5.003096 AGAGGTTTGAGTGGATGGAAATT 57.997 39.130 0.00 0.00 0.00 1.82
513 514 6.139679 AGAGGTTTGAGTGGATGGAAATTA 57.860 37.500 0.00 0.00 0.00 1.40
514 515 6.735556 AGAGGTTTGAGTGGATGGAAATTAT 58.264 36.000 0.00 0.00 0.00 1.28
515 516 6.830838 AGAGGTTTGAGTGGATGGAAATTATC 59.169 38.462 0.00 0.00 0.00 1.75
516 517 6.735556 AGGTTTGAGTGGATGGAAATTATCT 58.264 36.000 0.00 0.00 0.00 1.98
517 518 7.184862 AGGTTTGAGTGGATGGAAATTATCTT 58.815 34.615 0.00 0.00 0.00 2.40
518 519 7.675619 AGGTTTGAGTGGATGGAAATTATCTTT 59.324 33.333 0.00 0.00 0.00 2.52
519 520 7.976175 GGTTTGAGTGGATGGAAATTATCTTTC 59.024 37.037 0.00 0.00 0.00 2.62
520 521 8.522830 GTTTGAGTGGATGGAAATTATCTTTCA 58.477 33.333 0.71 0.00 0.00 2.69
521 522 8.648698 TTGAGTGGATGGAAATTATCTTTCAA 57.351 30.769 0.71 0.00 0.00 2.69
522 523 8.648698 TGAGTGGATGGAAATTATCTTTCAAA 57.351 30.769 0.71 0.00 0.00 2.69
523 524 9.087871 TGAGTGGATGGAAATTATCTTTCAAAA 57.912 29.630 0.71 0.00 0.00 2.44
525 526 9.880157 AGTGGATGGAAATTATCTTTCAAAATG 57.120 29.630 0.71 0.00 0.00 2.32
526 527 9.657419 GTGGATGGAAATTATCTTTCAAAATGT 57.343 29.630 0.71 0.00 0.00 2.71
550 551 9.967451 TGTAGTACAAATGGATTCTATGGAAAA 57.033 29.630 0.00 0.00 34.90 2.29
583 584 5.718649 ATGTCAATCCTACGAATCAAACG 57.281 39.130 0.00 0.00 0.00 3.60
584 585 4.811908 TGTCAATCCTACGAATCAAACGA 58.188 39.130 0.00 0.00 34.70 3.85
585 586 5.231702 TGTCAATCCTACGAATCAAACGAA 58.768 37.500 0.00 0.00 34.70 3.85
586 587 5.119588 TGTCAATCCTACGAATCAAACGAAC 59.880 40.000 0.00 0.00 34.70 3.95
587 588 5.119588 GTCAATCCTACGAATCAAACGAACA 59.880 40.000 0.00 0.00 34.70 3.18
588 589 5.872617 TCAATCCTACGAATCAAACGAACAT 59.127 36.000 0.00 0.00 34.70 2.71
589 590 5.968387 ATCCTACGAATCAAACGAACATC 57.032 39.130 0.00 0.00 34.70 3.06
590 591 4.811908 TCCTACGAATCAAACGAACATCA 58.188 39.130 0.00 0.00 34.70 3.07
591 592 4.624024 TCCTACGAATCAAACGAACATCAC 59.376 41.667 0.00 0.00 34.70 3.06
592 593 4.387559 CCTACGAATCAAACGAACATCACA 59.612 41.667 0.00 0.00 34.70 3.58
593 594 4.389664 ACGAATCAAACGAACATCACAG 57.610 40.909 0.00 0.00 34.70 3.66
594 595 4.055360 ACGAATCAAACGAACATCACAGA 58.945 39.130 0.00 0.00 34.70 3.41
595 596 4.509970 ACGAATCAAACGAACATCACAGAA 59.490 37.500 0.00 0.00 34.70 3.02
596 597 5.007234 ACGAATCAAACGAACATCACAGAAA 59.993 36.000 0.00 0.00 34.70 2.52
597 598 5.906838 CGAATCAAACGAACATCACAGAAAA 59.093 36.000 0.00 0.00 0.00 2.29
598 599 6.413526 CGAATCAAACGAACATCACAGAAAAA 59.586 34.615 0.00 0.00 0.00 1.94
664 665 4.170468 TGAATCAAAGGAGCCCTAATCC 57.830 45.455 0.00 0.00 37.07 3.01
679 680 2.764128 TCCTTGCGGGCTAGGAGG 60.764 66.667 17.87 7.87 41.63 4.30
680 681 2.764128 CCTTGCGGGCTAGGAGGA 60.764 66.667 14.78 0.00 40.55 3.71
681 682 2.143419 CCTTGCGGGCTAGGAGGAT 61.143 63.158 14.78 0.00 40.55 3.24
916 917 3.351416 AAAAACCGCCGAGACGCC 61.351 61.111 0.00 0.00 0.00 5.68
952 955 6.721321 AGAGAGATAGAAAGACGATCGAAAC 58.279 40.000 24.34 12.41 36.11 2.78
953 956 5.823353 AGAGATAGAAAGACGATCGAAACC 58.177 41.667 24.34 7.73 36.11 3.27
981 987 6.001449 AGATCGAGATCTAGGATTCTAGGG 57.999 45.833 13.42 0.00 45.69 3.53
1045 1051 2.915137 CCAACCCCAACCCCAACG 60.915 66.667 0.00 0.00 0.00 4.10
1490 1496 2.028930 CAGGTACCTTCGCTCTTTCACT 60.029 50.000 13.15 0.00 0.00 3.41
1492 1498 2.608268 GTACCTTCGCTCTTTCACTCC 58.392 52.381 0.00 0.00 0.00 3.85
1546 1552 8.122952 GTGCTAGTCTATGCGATTGTTATTTTT 58.877 33.333 0.00 0.00 0.00 1.94
1627 1633 1.484038 ACTGCCCTTTGACTTGCAAA 58.516 45.000 0.00 0.00 43.89 3.68
1721 1727 7.346471 ACTGCACTGTTAGATATATTTTGGGT 58.654 34.615 0.00 0.00 0.00 4.51
1732 1738 4.789012 ATATTTTGGGTCACAAGCACAG 57.211 40.909 0.00 0.00 40.82 3.66
1736 1742 2.263741 GGGTCACAAGCACAGCAGG 61.264 63.158 0.00 0.00 0.00 4.85
1834 1841 6.015434 TCCTGAATATGTGTGTAGCGTATCAT 60.015 38.462 0.00 0.00 0.00 2.45
1875 1882 9.193806 AGTTGAGAAAATACAGATGCCAATAAT 57.806 29.630 0.00 0.00 0.00 1.28
1989 1996 3.256136 AGCCTAGTCATGTCCTATTACGC 59.744 47.826 0.00 0.00 0.00 4.42
2049 2056 0.618458 TTATCACCTGGTGGCTGGTC 59.382 55.000 25.67 0.00 36.63 4.02
2065 2072 5.132648 TGGCTGGTCCTATTATTCATCTTGT 59.867 40.000 0.00 0.00 35.26 3.16
2093 2100 6.405278 AACAAGGTCCCTTTTCTGTTATTG 57.595 37.500 0.00 0.00 33.42 1.90
2137 2144 4.023450 GCTACGCCTATGATACACTACACA 60.023 45.833 0.00 0.00 0.00 3.72
2309 2316 2.834549 TCCACAAGCTTGAACCCAAAAA 59.165 40.909 32.50 4.72 0.00 1.94
2316 2323 5.453567 AGCTTGAACCCAAAAAGTACATC 57.546 39.130 0.00 0.00 0.00 3.06
2758 2769 4.313020 AAAATCAAGCACCCAGAGATCT 57.687 40.909 0.00 0.00 0.00 2.75
2819 2830 1.200948 GTTCAGATGCAAGGCCAGTTC 59.799 52.381 5.01 0.00 0.00 3.01
2839 2850 3.141398 TCCAGCTGAACATGTTTCTGAC 58.859 45.455 25.16 11.08 0.00 3.51
2897 2908 6.864685 GCAAGATGACTTTGACATTGATTTCA 59.135 34.615 0.00 0.00 33.70 2.69
2911 2922 8.807667 ACATTGATTTCACAAACTTTGATCTC 57.192 30.769 8.55 0.00 33.44 2.75
2953 2964 6.385649 TTTTCGGAACTATTGCTTGACTTT 57.614 33.333 0.00 0.00 0.00 2.66
3147 3158 4.752101 GTGAAGAGTAACAACATGACTGCT 59.248 41.667 0.00 0.00 0.00 4.24
3467 3478 4.342378 TGTATTTGTTTGCAGTTAAGGGCA 59.658 37.500 0.00 0.00 38.46 5.36
3509 3520 6.427853 TGGTGAATAGAACTGAACATCACAAG 59.572 38.462 0.00 0.00 37.91 3.16
3561 3572 6.588719 AACTGAGATGATCTAGATGGCTAC 57.411 41.667 10.74 0.00 0.00 3.58
3586 3597 6.308766 CCTAATTTGTTGCTACATGCTGTTTC 59.691 38.462 0.81 0.00 43.37 2.78
3823 3834 4.686091 GCTTTTGGTGCTCCTAAAATGTTC 59.314 41.667 13.91 1.04 37.81 3.18
3831 3843 5.985530 GTGCTCCTAAAATGTTCTTTGCTTT 59.014 36.000 0.00 0.00 0.00 3.51
4009 4029 8.594550 ACTTTGGAAGACTAATACATACACACT 58.405 33.333 0.00 0.00 0.00 3.55
4052 4072 9.421806 CACAGATTTGATAAATTTGTTTGCCTA 57.578 29.630 0.00 0.00 41.71 3.93
4100 4120 7.379529 GCATCATGTAAATTTCTATGGTTTCCG 59.620 37.037 12.16 0.00 0.00 4.30
4246 4266 8.882736 AGAATTTTCAACCAACAAGCTTAAAAG 58.117 29.630 0.00 0.00 0.00 2.27
4278 4298 3.316308 GGCGTCCAGATGAAAAGCATATT 59.684 43.478 0.00 0.00 37.34 1.28
4304 4324 2.434702 GGGGAGAGACACGTATGGATTT 59.565 50.000 0.00 0.00 0.00 2.17
4455 4481 3.817084 CCAGAATGTCTTGAGAGCAAACA 59.183 43.478 0.00 0.00 32.73 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.854979 TGTGTGAACACTTTCTGAAATAAATG 57.145 30.769 14.28 3.36 46.55 2.32
2 3 9.868277 AAATGTGTGAACACTTTCTGAAATAAA 57.132 25.926 14.28 0.00 46.55 1.40
3 4 9.299963 CAAATGTGTGAACACTTTCTGAAATAA 57.700 29.630 14.28 0.00 46.55 1.40
4 5 8.681806 TCAAATGTGTGAACACTTTCTGAAATA 58.318 29.630 14.28 0.00 46.55 1.40
5 6 7.546358 TCAAATGTGTGAACACTTTCTGAAAT 58.454 30.769 14.28 0.00 46.55 2.17
6 7 6.918626 TCAAATGTGTGAACACTTTCTGAAA 58.081 32.000 14.28 2.44 46.55 2.69
7 8 6.507958 TCAAATGTGTGAACACTTTCTGAA 57.492 33.333 14.28 0.00 46.55 3.02
8 9 6.698008 ATCAAATGTGTGAACACTTTCTGA 57.302 33.333 14.28 16.74 46.55 3.27
9 10 7.760131 AAATCAAATGTGTGAACACTTTCTG 57.240 32.000 14.28 13.27 46.55 3.02
10 11 7.818930 ACAAAATCAAATGTGTGAACACTTTCT 59.181 29.630 14.28 3.96 46.55 2.52
11 12 7.962917 ACAAAATCAAATGTGTGAACACTTTC 58.037 30.769 14.28 0.91 46.55 2.62
12 13 7.903995 ACAAAATCAAATGTGTGAACACTTT 57.096 28.000 14.28 11.22 46.55 2.66
13 14 7.903995 AACAAAATCAAATGTGTGAACACTT 57.096 28.000 14.28 5.71 46.55 3.16
14 15 7.623925 GCAAACAAAATCAAATGTGTGAACACT 60.624 33.333 14.28 0.00 46.55 3.55
15 16 6.465465 GCAAACAAAATCAAATGTGTGAACAC 59.535 34.615 6.63 6.63 46.59 3.32
16 17 6.541086 GCAAACAAAATCAAATGTGTGAACA 58.459 32.000 0.44 0.00 37.00 3.18
17 18 5.671997 CGCAAACAAAATCAAATGTGTGAAC 59.328 36.000 0.44 0.00 37.00 3.18
18 19 5.220548 CCGCAAACAAAATCAAATGTGTGAA 60.221 36.000 0.44 0.00 37.00 3.18
19 20 4.269603 CCGCAAACAAAATCAAATGTGTGA 59.730 37.500 0.44 0.00 37.00 3.58
20 21 4.516359 CCGCAAACAAAATCAAATGTGTG 58.484 39.130 0.00 0.00 37.74 3.82
21 22 3.559242 CCCGCAAACAAAATCAAATGTGT 59.441 39.130 0.00 0.00 0.00 3.72
22 23 3.059051 CCCCGCAAACAAAATCAAATGTG 60.059 43.478 0.00 0.00 0.00 3.21
23 24 3.137533 CCCCGCAAACAAAATCAAATGT 58.862 40.909 0.00 0.00 0.00 2.71
24 25 2.483491 CCCCCGCAAACAAAATCAAATG 59.517 45.455 0.00 0.00 0.00 2.32
25 26 2.777094 CCCCCGCAAACAAAATCAAAT 58.223 42.857 0.00 0.00 0.00 2.32
26 27 1.811941 GCCCCCGCAAACAAAATCAAA 60.812 47.619 0.00 0.00 34.03 2.69
27 28 0.250081 GCCCCCGCAAACAAAATCAA 60.250 50.000 0.00 0.00 34.03 2.57
28 29 1.369321 GCCCCCGCAAACAAAATCA 59.631 52.632 0.00 0.00 34.03 2.57
29 30 1.375396 GGCCCCCGCAAACAAAATC 60.375 57.895 0.00 0.00 36.38 2.17
30 31 1.487850 ATGGCCCCCGCAAACAAAAT 61.488 50.000 0.00 0.00 36.38 1.82
31 32 1.700042 AATGGCCCCCGCAAACAAAA 61.700 50.000 0.00 0.00 36.38 2.44
32 33 1.700042 AAATGGCCCCCGCAAACAAA 61.700 50.000 0.00 0.00 36.38 2.83
33 34 2.143419 AAATGGCCCCCGCAAACAA 61.143 52.632 0.00 0.00 36.38 2.83
34 35 2.525381 AAATGGCCCCCGCAAACA 60.525 55.556 0.00 0.00 36.38 2.83
35 36 1.898330 ATCAAATGGCCCCCGCAAAC 61.898 55.000 0.00 0.00 36.38 2.93
36 37 1.197430 AATCAAATGGCCCCCGCAAA 61.197 50.000 0.00 0.00 36.38 3.68
37 38 1.197430 AAATCAAATGGCCCCCGCAA 61.197 50.000 0.00 0.00 36.38 4.85
38 39 1.197430 AAAATCAAATGGCCCCCGCA 61.197 50.000 0.00 0.00 36.38 5.69
39 40 0.035534 AAAAATCAAATGGCCCCCGC 60.036 50.000 0.00 0.00 0.00 6.13
92 93 9.614792 GGAGGTAGTGATTGTATATGAACTTTT 57.385 33.333 0.00 0.00 0.00 2.27
93 94 7.926555 CGGAGGTAGTGATTGTATATGAACTTT 59.073 37.037 0.00 0.00 0.00 2.66
94 95 7.069578 ACGGAGGTAGTGATTGTATATGAACTT 59.930 37.037 0.00 0.00 0.00 2.66
95 96 6.550108 ACGGAGGTAGTGATTGTATATGAACT 59.450 38.462 0.00 0.00 0.00 3.01
96 97 6.746120 ACGGAGGTAGTGATTGTATATGAAC 58.254 40.000 0.00 0.00 0.00 3.18
97 98 6.015688 GGACGGAGGTAGTGATTGTATATGAA 60.016 42.308 0.00 0.00 0.00 2.57
98 99 5.475909 GGACGGAGGTAGTGATTGTATATGA 59.524 44.000 0.00 0.00 0.00 2.15
99 100 5.336531 GGGACGGAGGTAGTGATTGTATATG 60.337 48.000 0.00 0.00 0.00 1.78
100 101 4.771054 GGGACGGAGGTAGTGATTGTATAT 59.229 45.833 0.00 0.00 0.00 0.86
101 102 4.147321 GGGACGGAGGTAGTGATTGTATA 58.853 47.826 0.00 0.00 0.00 1.47
102 103 2.963782 GGGACGGAGGTAGTGATTGTAT 59.036 50.000 0.00 0.00 0.00 2.29
103 104 2.291735 TGGGACGGAGGTAGTGATTGTA 60.292 50.000 0.00 0.00 0.00 2.41
104 105 1.192428 GGGACGGAGGTAGTGATTGT 58.808 55.000 0.00 0.00 0.00 2.71
105 106 1.134788 GTGGGACGGAGGTAGTGATTG 60.135 57.143 0.00 0.00 0.00 2.67
106 107 1.192428 GTGGGACGGAGGTAGTGATT 58.808 55.000 0.00 0.00 0.00 2.57
107 108 0.335361 AGTGGGACGGAGGTAGTGAT 59.665 55.000 0.00 0.00 0.00 3.06
108 109 0.994247 TAGTGGGACGGAGGTAGTGA 59.006 55.000 0.00 0.00 0.00 3.41
109 110 2.068834 ATAGTGGGACGGAGGTAGTG 57.931 55.000 0.00 0.00 0.00 2.74
110 111 5.311649 TCTTATATAGTGGGACGGAGGTAGT 59.688 44.000 0.00 0.00 0.00 2.73
111 112 5.647225 GTCTTATATAGTGGGACGGAGGTAG 59.353 48.000 0.00 0.00 0.00 3.18
112 113 5.515534 GGTCTTATATAGTGGGACGGAGGTA 60.516 48.000 0.00 0.00 0.00 3.08
113 114 4.405548 GTCTTATATAGTGGGACGGAGGT 58.594 47.826 0.00 0.00 0.00 3.85
114 115 3.762823 GGTCTTATATAGTGGGACGGAGG 59.237 52.174 0.00 0.00 0.00 4.30
115 116 3.762823 GGGTCTTATATAGTGGGACGGAG 59.237 52.174 0.00 0.00 0.00 4.63
116 117 3.400322 AGGGTCTTATATAGTGGGACGGA 59.600 47.826 0.00 0.00 0.00 4.69
117 118 3.775910 AGGGTCTTATATAGTGGGACGG 58.224 50.000 0.00 0.00 0.00 4.79
118 119 5.803237 AAAGGGTCTTATATAGTGGGACG 57.197 43.478 0.00 0.00 0.00 4.79
119 120 5.763698 GCAAAAGGGTCTTATATAGTGGGAC 59.236 44.000 0.00 0.00 0.00 4.46
120 121 5.430417 TGCAAAAGGGTCTTATATAGTGGGA 59.570 40.000 0.00 0.00 0.00 4.37
121 122 5.690865 TGCAAAAGGGTCTTATATAGTGGG 58.309 41.667 0.00 0.00 0.00 4.61
122 123 6.238759 GCTTGCAAAAGGGTCTTATATAGTGG 60.239 42.308 0.00 0.00 0.00 4.00
123 124 6.543831 AGCTTGCAAAAGGGTCTTATATAGTG 59.456 38.462 0.00 0.00 0.00 2.74
124 125 6.663734 AGCTTGCAAAAGGGTCTTATATAGT 58.336 36.000 0.00 0.00 0.00 2.12
125 126 7.095607 CGTAGCTTGCAAAAGGGTCTTATATAG 60.096 40.741 0.00 0.00 0.00 1.31
126 127 6.704493 CGTAGCTTGCAAAAGGGTCTTATATA 59.296 38.462 0.00 0.00 0.00 0.86
127 128 5.527582 CGTAGCTTGCAAAAGGGTCTTATAT 59.472 40.000 0.00 0.00 0.00 0.86
128 129 4.873827 CGTAGCTTGCAAAAGGGTCTTATA 59.126 41.667 0.00 0.00 0.00 0.98
129 130 3.689649 CGTAGCTTGCAAAAGGGTCTTAT 59.310 43.478 0.00 0.00 0.00 1.73
130 131 3.071479 CGTAGCTTGCAAAAGGGTCTTA 58.929 45.455 0.00 0.00 0.00 2.10
131 132 1.880027 CGTAGCTTGCAAAAGGGTCTT 59.120 47.619 0.00 0.00 0.00 3.01
132 133 1.202770 ACGTAGCTTGCAAAAGGGTCT 60.203 47.619 0.00 0.00 0.00 3.85
133 134 1.197036 GACGTAGCTTGCAAAAGGGTC 59.803 52.381 0.00 1.24 0.00 4.46
134 135 1.202770 AGACGTAGCTTGCAAAAGGGT 60.203 47.619 0.00 0.00 0.00 4.34
135 136 1.523758 AGACGTAGCTTGCAAAAGGG 58.476 50.000 0.00 0.00 0.00 3.95
136 137 4.946784 ATAAGACGTAGCTTGCAAAAGG 57.053 40.909 0.00 0.00 0.00 3.11
137 138 6.019801 ACGATATAAGACGTAGCTTGCAAAAG 60.020 38.462 0.00 0.00 40.92 2.27
138 139 5.808540 ACGATATAAGACGTAGCTTGCAAAA 59.191 36.000 0.00 0.00 40.92 2.44
139 140 5.231357 CACGATATAAGACGTAGCTTGCAAA 59.769 40.000 0.00 0.00 40.76 3.68
140 141 4.738252 CACGATATAAGACGTAGCTTGCAA 59.262 41.667 0.00 0.00 40.76 4.08
141 142 4.287720 CACGATATAAGACGTAGCTTGCA 58.712 43.478 0.00 0.00 40.76 4.08
142 143 3.669122 CCACGATATAAGACGTAGCTTGC 59.331 47.826 0.00 0.00 40.76 4.01
143 144 4.023450 TCCCACGATATAAGACGTAGCTTG 60.023 45.833 0.00 0.00 40.76 4.01
144 145 4.023365 GTCCCACGATATAAGACGTAGCTT 60.023 45.833 0.00 0.00 40.76 3.74
145 146 3.501445 GTCCCACGATATAAGACGTAGCT 59.499 47.826 0.00 0.00 40.76 3.32
146 147 3.666374 CGTCCCACGATATAAGACGTAGC 60.666 52.174 2.88 0.00 46.05 3.58
147 148 3.120408 CCGTCCCACGATATAAGACGTAG 60.120 52.174 9.63 0.00 46.05 3.51
148 149 2.807967 CCGTCCCACGATATAAGACGTA 59.192 50.000 9.63 0.00 46.05 3.57
149 150 1.605710 CCGTCCCACGATATAAGACGT 59.394 52.381 9.63 0.00 46.05 4.34
150 151 1.875514 TCCGTCCCACGATATAAGACG 59.124 52.381 4.00 4.00 46.05 4.18
151 152 2.228343 CCTCCGTCCCACGATATAAGAC 59.772 54.545 0.00 0.00 46.05 3.01
152 153 2.511659 CCTCCGTCCCACGATATAAGA 58.488 52.381 0.00 0.00 46.05 2.10
153 154 1.544691 CCCTCCGTCCCACGATATAAG 59.455 57.143 0.00 0.00 46.05 1.73
154 155 1.145531 TCCCTCCGTCCCACGATATAA 59.854 52.381 0.00 0.00 46.05 0.98
155 156 0.773014 TCCCTCCGTCCCACGATATA 59.227 55.000 0.00 0.00 46.05 0.86
156 157 0.539901 CTCCCTCCGTCCCACGATAT 60.540 60.000 0.00 0.00 46.05 1.63
157 158 1.152819 CTCCCTCCGTCCCACGATA 60.153 63.158 0.00 0.00 46.05 2.92
158 159 1.929860 TACTCCCTCCGTCCCACGAT 61.930 60.000 0.00 0.00 46.05 3.73
159 160 2.547640 CTACTCCCTCCGTCCCACGA 62.548 65.000 0.00 0.00 46.05 4.35
160 161 2.044650 TACTCCCTCCGTCCCACG 60.045 66.667 0.00 0.00 42.11 4.94
161 162 0.106116 ATCTACTCCCTCCGTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
162 163 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
163 164 1.330234 GAATCTACTCCCTCCGTCCC 58.670 60.000 0.00 0.00 0.00 4.46
164 165 2.068834 TGAATCTACTCCCTCCGTCC 57.931 55.000 0.00 0.00 0.00 4.79
165 166 4.099573 TGAAATGAATCTACTCCCTCCGTC 59.900 45.833 0.00 0.00 0.00 4.79
166 167 4.030913 TGAAATGAATCTACTCCCTCCGT 58.969 43.478 0.00 0.00 0.00 4.69
167 168 4.672587 TGAAATGAATCTACTCCCTCCG 57.327 45.455 0.00 0.00 0.00 4.63
168 169 7.067496 TGTATGAAATGAATCTACTCCCTCC 57.933 40.000 0.00 0.00 0.00 4.30
169 170 7.731054 ACTGTATGAAATGAATCTACTCCCTC 58.269 38.462 0.00 0.00 0.00 4.30
170 171 7.682787 ACTGTATGAAATGAATCTACTCCCT 57.317 36.000 0.00 0.00 0.00 4.20
171 172 8.738645 AAACTGTATGAAATGAATCTACTCCC 57.261 34.615 0.00 0.00 0.00 4.30
172 173 9.994432 CAAAACTGTATGAAATGAATCTACTCC 57.006 33.333 0.00 0.00 0.00 3.85
173 174 9.495754 GCAAAACTGTATGAAATGAATCTACTC 57.504 33.333 0.00 0.00 0.00 2.59
174 175 9.013229 TGCAAAACTGTATGAAATGAATCTACT 57.987 29.630 0.00 0.00 0.00 2.57
175 176 9.624697 TTGCAAAACTGTATGAAATGAATCTAC 57.375 29.630 0.00 0.00 0.00 2.59
177 178 9.545105 TTTTGCAAAACTGTATGAAATGAATCT 57.455 25.926 20.46 0.00 0.00 2.40
180 181 9.107177 ACATTTTGCAAAACTGTATGAAATGAA 57.893 25.926 26.05 0.00 0.00 2.57
181 182 8.659925 ACATTTTGCAAAACTGTATGAAATGA 57.340 26.923 26.05 0.00 0.00 2.57
182 183 9.160576 CAACATTTTGCAAAACTGTATGAAATG 57.839 29.630 26.05 17.56 0.00 2.32
183 184 9.107177 TCAACATTTTGCAAAACTGTATGAAAT 57.893 25.926 26.05 12.09 32.17 2.17
184 185 8.386606 GTCAACATTTTGCAAAACTGTATGAAA 58.613 29.630 26.05 12.17 32.17 2.69
185 186 7.763528 AGTCAACATTTTGCAAAACTGTATGAA 59.236 29.630 26.05 13.48 32.17 2.57
186 187 7.222417 CAGTCAACATTTTGCAAAACTGTATGA 59.778 33.333 26.05 24.70 32.77 2.15
187 188 7.010367 ACAGTCAACATTTTGCAAAACTGTATG 59.990 33.333 29.91 23.84 41.65 2.39
188 189 7.041107 ACAGTCAACATTTTGCAAAACTGTAT 58.959 30.769 29.91 19.64 41.65 2.29
189 190 6.393990 ACAGTCAACATTTTGCAAAACTGTA 58.606 32.000 29.91 17.74 41.65 2.74
190 191 5.237048 ACAGTCAACATTTTGCAAAACTGT 58.763 33.333 27.44 27.44 40.02 3.55
191 192 5.783100 ACAGTCAACATTTTGCAAAACTG 57.217 34.783 26.47 26.47 38.72 3.16
192 193 7.651704 GGTATACAGTCAACATTTTGCAAAACT 59.348 33.333 26.05 15.51 32.17 2.66
193 194 7.095816 GGGTATACAGTCAACATTTTGCAAAAC 60.096 37.037 26.05 13.46 32.17 2.43
194 195 6.926272 GGGTATACAGTCAACATTTTGCAAAA 59.074 34.615 25.76 25.76 32.17 2.44
195 196 6.451393 GGGTATACAGTCAACATTTTGCAAA 58.549 36.000 8.05 8.05 32.17 3.68
196 197 5.047660 GGGGTATACAGTCAACATTTTGCAA 60.048 40.000 5.01 0.00 32.17 4.08
197 198 4.461081 GGGGTATACAGTCAACATTTTGCA 59.539 41.667 5.01 0.00 32.17 4.08
198 199 4.142249 GGGGGTATACAGTCAACATTTTGC 60.142 45.833 5.01 0.00 32.17 3.68
199 200 5.013547 TGGGGGTATACAGTCAACATTTTG 58.986 41.667 5.01 0.00 0.00 2.44
200 201 5.263872 TGGGGGTATACAGTCAACATTTT 57.736 39.130 5.01 0.00 0.00 1.82
201 202 4.938575 TGGGGGTATACAGTCAACATTT 57.061 40.909 5.01 0.00 0.00 2.32
202 203 4.538490 TCTTGGGGGTATACAGTCAACATT 59.462 41.667 5.01 0.00 0.00 2.71
203 204 4.108570 TCTTGGGGGTATACAGTCAACAT 58.891 43.478 5.01 0.00 0.00 2.71
204 205 3.522759 TCTTGGGGGTATACAGTCAACA 58.477 45.455 5.01 0.00 0.00 3.33
205 206 4.563140 TTCTTGGGGGTATACAGTCAAC 57.437 45.455 5.01 0.00 0.00 3.18
206 207 4.600111 ACTTTCTTGGGGGTATACAGTCAA 59.400 41.667 5.01 4.80 0.00 3.18
207 208 4.019681 CACTTTCTTGGGGGTATACAGTCA 60.020 45.833 5.01 0.00 0.00 3.41
208 209 4.224370 TCACTTTCTTGGGGGTATACAGTC 59.776 45.833 5.01 0.00 0.00 3.51
209 210 4.172807 TCACTTTCTTGGGGGTATACAGT 58.827 43.478 5.01 0.00 0.00 3.55
210 211 4.837093 TCACTTTCTTGGGGGTATACAG 57.163 45.455 5.01 0.00 0.00 2.74
211 212 5.318630 GTTTCACTTTCTTGGGGGTATACA 58.681 41.667 5.01 0.00 0.00 2.29
212 213 4.703575 GGTTTCACTTTCTTGGGGGTATAC 59.296 45.833 0.00 0.00 0.00 1.47
213 214 4.354387 TGGTTTCACTTTCTTGGGGGTATA 59.646 41.667 0.00 0.00 0.00 1.47
214 215 3.141272 TGGTTTCACTTTCTTGGGGGTAT 59.859 43.478 0.00 0.00 0.00 2.73
215 216 2.514582 TGGTTTCACTTTCTTGGGGGTA 59.485 45.455 0.00 0.00 0.00 3.69
216 217 1.289530 TGGTTTCACTTTCTTGGGGGT 59.710 47.619 0.00 0.00 0.00 4.95
217 218 2.080654 TGGTTTCACTTTCTTGGGGG 57.919 50.000 0.00 0.00 0.00 5.40
218 219 5.304357 ACTTTATGGTTTCACTTTCTTGGGG 59.696 40.000 0.00 0.00 0.00 4.96
219 220 6.405278 ACTTTATGGTTTCACTTTCTTGGG 57.595 37.500 0.00 0.00 0.00 4.12
220 221 9.981114 ATTTACTTTATGGTTTCACTTTCTTGG 57.019 29.630 0.00 0.00 0.00 3.61
244 245 9.810545 TCTTGTTCCTTCATTTTCGTTTTTATT 57.189 25.926 0.00 0.00 0.00 1.40
245 246 9.810545 TTCTTGTTCCTTCATTTTCGTTTTTAT 57.189 25.926 0.00 0.00 0.00 1.40
246 247 9.640963 TTTCTTGTTCCTTCATTTTCGTTTTTA 57.359 25.926 0.00 0.00 0.00 1.52
247 248 8.541133 TTTCTTGTTCCTTCATTTTCGTTTTT 57.459 26.923 0.00 0.00 0.00 1.94
248 249 8.541133 TTTTCTTGTTCCTTCATTTTCGTTTT 57.459 26.923 0.00 0.00 0.00 2.43
249 250 8.541133 TTTTTCTTGTTCCTTCATTTTCGTTT 57.459 26.923 0.00 0.00 0.00 3.60
289 290 8.531146 CCCATGTAGGTTTTTCTATGACATTTT 58.469 33.333 0.00 0.00 34.66 1.82
290 291 7.363793 GCCCATGTAGGTTTTTCTATGACATTT 60.364 37.037 0.00 0.00 34.66 2.32
291 292 6.096846 GCCCATGTAGGTTTTTCTATGACATT 59.903 38.462 0.00 0.00 34.66 2.71
292 293 5.594317 GCCCATGTAGGTTTTTCTATGACAT 59.406 40.000 0.00 0.00 34.66 3.06
293 294 4.947388 GCCCATGTAGGTTTTTCTATGACA 59.053 41.667 0.00 0.00 34.66 3.58
294 295 4.338400 GGCCCATGTAGGTTTTTCTATGAC 59.662 45.833 0.00 0.00 34.66 3.06
295 296 4.532834 GGCCCATGTAGGTTTTTCTATGA 58.467 43.478 0.00 0.00 34.66 2.15
296 297 3.315191 CGGCCCATGTAGGTTTTTCTATG 59.685 47.826 0.00 0.00 34.66 2.23
297 298 3.551846 CGGCCCATGTAGGTTTTTCTAT 58.448 45.455 0.00 0.00 34.66 1.98
298 299 2.356330 CCGGCCCATGTAGGTTTTTCTA 60.356 50.000 0.00 0.00 34.66 2.10
299 300 1.615919 CCGGCCCATGTAGGTTTTTCT 60.616 52.381 0.00 0.00 34.66 2.52
300 301 0.815095 CCGGCCCATGTAGGTTTTTC 59.185 55.000 0.00 0.00 34.66 2.29
301 302 1.254975 GCCGGCCCATGTAGGTTTTT 61.255 55.000 18.11 0.00 34.66 1.94
302 303 1.680989 GCCGGCCCATGTAGGTTTT 60.681 57.895 18.11 0.00 34.66 2.43
303 304 2.044352 GCCGGCCCATGTAGGTTT 60.044 61.111 18.11 0.00 34.66 3.27
304 305 4.123545 GGCCGGCCCATGTAGGTT 62.124 66.667 36.64 0.00 34.66 3.50
345 346 4.592997 AAAGAGGCCCTAATTAGTTGCT 57.407 40.909 18.35 8.88 0.00 3.91
350 351 5.763204 TGCGAATTAAAGAGGCCCTAATTAG 59.237 40.000 0.00 5.43 0.00 1.73
351 352 5.686753 TGCGAATTAAAGAGGCCCTAATTA 58.313 37.500 0.00 0.00 0.00 1.40
352 353 4.532834 TGCGAATTAAAGAGGCCCTAATT 58.467 39.130 0.00 4.27 0.00 1.40
354 355 3.637911 TGCGAATTAAAGAGGCCCTAA 57.362 42.857 0.00 0.00 0.00 2.69
356 357 2.092429 TCATGCGAATTAAAGAGGCCCT 60.092 45.455 0.00 0.00 0.00 5.19
357 358 2.297701 TCATGCGAATTAAAGAGGCCC 58.702 47.619 0.00 0.00 0.00 5.80
358 359 4.202050 ACAATCATGCGAATTAAAGAGGCC 60.202 41.667 0.00 0.00 0.00 5.19
359 360 4.925068 ACAATCATGCGAATTAAAGAGGC 58.075 39.130 0.00 0.00 0.00 4.70
360 361 6.122850 TGACAATCATGCGAATTAAAGAGG 57.877 37.500 0.00 0.00 0.00 3.69
361 362 8.451687 TTTTGACAATCATGCGAATTAAAGAG 57.548 30.769 0.00 0.00 0.00 2.85
362 363 8.862074 CATTTTGACAATCATGCGAATTAAAGA 58.138 29.630 0.00 0.00 0.00 2.52
363 364 8.862074 TCATTTTGACAATCATGCGAATTAAAG 58.138 29.630 0.00 0.00 0.00 1.85
364 365 8.754230 TCATTTTGACAATCATGCGAATTAAA 57.246 26.923 0.00 0.00 0.00 1.52
365 366 8.754230 TTCATTTTGACAATCATGCGAATTAA 57.246 26.923 0.00 0.00 0.00 1.40
366 367 8.754230 TTTCATTTTGACAATCATGCGAATTA 57.246 26.923 0.00 0.00 0.00 1.40
367 368 7.599621 TCTTTCATTTTGACAATCATGCGAATT 59.400 29.630 0.00 0.00 0.00 2.17
368 369 7.092079 TCTTTCATTTTGACAATCATGCGAAT 58.908 30.769 0.00 0.00 0.00 3.34
369 370 6.445475 TCTTTCATTTTGACAATCATGCGAA 58.555 32.000 0.00 0.00 0.00 4.70
370 371 6.011476 TCTTTCATTTTGACAATCATGCGA 57.989 33.333 0.00 0.00 0.00 5.10
371 372 6.693761 TTCTTTCATTTTGACAATCATGCG 57.306 33.333 0.00 0.00 0.00 4.73
372 373 8.814235 CCTATTCTTTCATTTTGACAATCATGC 58.186 33.333 0.00 0.00 0.00 4.06
381 382 9.775854 TGCATTTTTCCTATTCTTTCATTTTGA 57.224 25.926 0.00 0.00 0.00 2.69
392 393 9.688592 CCATTCTATTCTGCATTTTTCCTATTC 57.311 33.333 0.00 0.00 0.00 1.75
393 394 8.146412 GCCATTCTATTCTGCATTTTTCCTATT 58.854 33.333 0.00 0.00 0.00 1.73
394 395 7.288389 TGCCATTCTATTCTGCATTTTTCCTAT 59.712 33.333 0.00 0.00 0.00 2.57
395 396 6.606796 TGCCATTCTATTCTGCATTTTTCCTA 59.393 34.615 0.00 0.00 0.00 2.94
396 397 5.422970 TGCCATTCTATTCTGCATTTTTCCT 59.577 36.000 0.00 0.00 0.00 3.36
397 398 5.663456 TGCCATTCTATTCTGCATTTTTCC 58.337 37.500 0.00 0.00 0.00 3.13
398 399 6.759827 ACATGCCATTCTATTCTGCATTTTTC 59.240 34.615 0.00 0.00 40.46 2.29
399 400 6.646267 ACATGCCATTCTATTCTGCATTTTT 58.354 32.000 0.00 0.00 40.46 1.94
400 401 6.229936 ACATGCCATTCTATTCTGCATTTT 57.770 33.333 0.00 0.00 40.46 1.82
401 402 5.221382 GGACATGCCATTCTATTCTGCATTT 60.221 40.000 0.00 0.00 40.46 2.32
402 403 4.280174 GGACATGCCATTCTATTCTGCATT 59.720 41.667 0.00 0.00 40.46 3.56
403 404 3.825014 GGACATGCCATTCTATTCTGCAT 59.175 43.478 0.00 0.00 43.01 3.96
404 405 3.117776 AGGACATGCCATTCTATTCTGCA 60.118 43.478 8.58 0.00 40.02 4.41
405 406 3.484407 AGGACATGCCATTCTATTCTGC 58.516 45.455 8.58 0.00 40.02 4.26
406 407 7.619050 ACTATAGGACATGCCATTCTATTCTG 58.381 38.462 4.43 0.00 40.02 3.02
407 408 7.805083 ACTATAGGACATGCCATTCTATTCT 57.195 36.000 4.43 0.00 40.02 2.40
408 409 9.757227 GATACTATAGGACATGCCATTCTATTC 57.243 37.037 4.43 0.00 40.02 1.75
409 410 8.709308 GGATACTATAGGACATGCCATTCTATT 58.291 37.037 4.43 0.00 40.02 1.73
410 411 8.256356 GGATACTATAGGACATGCCATTCTAT 57.744 38.462 4.43 0.00 40.02 1.98
411 412 7.661536 GGATACTATAGGACATGCCATTCTA 57.338 40.000 4.43 0.00 40.02 2.10
412 413 6.552445 GGATACTATAGGACATGCCATTCT 57.448 41.667 4.43 0.00 40.02 2.40
434 435 7.885297 TCAAACATTCTTTCAAATCCTGTAGG 58.115 34.615 0.00 0.00 0.00 3.18
437 438 8.031277 GCTATCAAACATTCTTTCAAATCCTGT 58.969 33.333 0.00 0.00 0.00 4.00
438 439 8.030692 TGCTATCAAACATTCTTTCAAATCCTG 58.969 33.333 0.00 0.00 0.00 3.86
439 440 8.031277 GTGCTATCAAACATTCTTTCAAATCCT 58.969 33.333 0.00 0.00 0.00 3.24
440 441 7.008628 CGTGCTATCAAACATTCTTTCAAATCC 59.991 37.037 0.00 0.00 0.00 3.01
441 442 7.008628 CCGTGCTATCAAACATTCTTTCAAATC 59.991 37.037 0.00 0.00 0.00 2.17
442 443 6.808212 CCGTGCTATCAAACATTCTTTCAAAT 59.192 34.615 0.00 0.00 0.00 2.32
443 444 6.148948 CCGTGCTATCAAACATTCTTTCAAA 58.851 36.000 0.00 0.00 0.00 2.69
444 445 5.335583 CCCGTGCTATCAAACATTCTTTCAA 60.336 40.000 0.00 0.00 0.00 2.69
445 446 4.155826 CCCGTGCTATCAAACATTCTTTCA 59.844 41.667 0.00 0.00 0.00 2.69
446 447 4.394920 TCCCGTGCTATCAAACATTCTTTC 59.605 41.667 0.00 0.00 0.00 2.62
447 448 4.331968 TCCCGTGCTATCAAACATTCTTT 58.668 39.130 0.00 0.00 0.00 2.52
448 449 3.950397 TCCCGTGCTATCAAACATTCTT 58.050 40.909 0.00 0.00 0.00 2.52
449 450 3.627395 TCCCGTGCTATCAAACATTCT 57.373 42.857 0.00 0.00 0.00 2.40
450 451 4.695217 TTTCCCGTGCTATCAAACATTC 57.305 40.909 0.00 0.00 0.00 2.67
451 452 5.221342 TGTTTTTCCCGTGCTATCAAACATT 60.221 36.000 0.00 0.00 29.87 2.71
452 453 4.279671 TGTTTTTCCCGTGCTATCAAACAT 59.720 37.500 0.00 0.00 29.87 2.71
453 454 3.632604 TGTTTTTCCCGTGCTATCAAACA 59.367 39.130 0.00 0.00 31.84 2.83
454 455 4.231718 TGTTTTTCCCGTGCTATCAAAC 57.768 40.909 0.00 0.00 0.00 2.93
455 456 4.920640 TTGTTTTTCCCGTGCTATCAAA 57.079 36.364 0.00 0.00 0.00 2.69
456 457 4.580995 TCTTTGTTTTTCCCGTGCTATCAA 59.419 37.500 0.00 0.00 0.00 2.57
457 458 4.138290 TCTTTGTTTTTCCCGTGCTATCA 58.862 39.130 0.00 0.00 0.00 2.15
458 459 4.759516 TCTTTGTTTTTCCCGTGCTATC 57.240 40.909 0.00 0.00 0.00 2.08
459 460 5.523438 TTTCTTTGTTTTTCCCGTGCTAT 57.477 34.783 0.00 0.00 0.00 2.97
460 461 4.985538 TTTCTTTGTTTTTCCCGTGCTA 57.014 36.364 0.00 0.00 0.00 3.49
461 462 3.878160 TTTCTTTGTTTTTCCCGTGCT 57.122 38.095 0.00 0.00 0.00 4.40
462 463 4.808895 AGAATTTCTTTGTTTTTCCCGTGC 59.191 37.500 0.00 0.00 0.00 5.34
463 464 6.975772 TGTAGAATTTCTTTGTTTTTCCCGTG 59.024 34.615 3.86 0.00 0.00 4.94
464 465 7.102847 TGTAGAATTTCTTTGTTTTTCCCGT 57.897 32.000 3.86 0.00 0.00 5.28
465 466 7.995463 TTGTAGAATTTCTTTGTTTTTCCCG 57.005 32.000 3.86 0.00 0.00 5.14
466 467 9.594478 TCTTTGTAGAATTTCTTTGTTTTTCCC 57.406 29.630 3.86 0.00 0.00 3.97
472 473 9.586435 CAAACCTCTTTGTAGAATTTCTTTGTT 57.414 29.630 3.86 0.00 33.31 2.83
473 474 8.966868 TCAAACCTCTTTGTAGAATTTCTTTGT 58.033 29.630 3.86 0.00 38.38 2.83
474 475 9.455847 CTCAAACCTCTTTGTAGAATTTCTTTG 57.544 33.333 3.86 0.00 38.38 2.77
475 476 9.190317 ACTCAAACCTCTTTGTAGAATTTCTTT 57.810 29.630 3.86 0.00 38.38 2.52
476 477 8.624776 CACTCAAACCTCTTTGTAGAATTTCTT 58.375 33.333 3.86 0.00 38.38 2.52
477 478 7.229506 CCACTCAAACCTCTTTGTAGAATTTCT 59.770 37.037 4.03 4.03 38.38 2.52
478 479 7.228706 TCCACTCAAACCTCTTTGTAGAATTTC 59.771 37.037 0.00 0.00 38.38 2.17
479 480 7.060421 TCCACTCAAACCTCTTTGTAGAATTT 58.940 34.615 0.00 0.00 38.38 1.82
480 481 6.601332 TCCACTCAAACCTCTTTGTAGAATT 58.399 36.000 0.00 0.00 38.38 2.17
481 482 6.187727 TCCACTCAAACCTCTTTGTAGAAT 57.812 37.500 0.00 0.00 38.38 2.40
482 483 5.623956 TCCACTCAAACCTCTTTGTAGAA 57.376 39.130 0.00 0.00 38.38 2.10
483 484 5.513094 CCATCCACTCAAACCTCTTTGTAGA 60.513 44.000 0.00 0.00 38.38 2.59
484 485 4.697352 CCATCCACTCAAACCTCTTTGTAG 59.303 45.833 0.00 0.00 38.38 2.74
485 486 4.349636 TCCATCCACTCAAACCTCTTTGTA 59.650 41.667 0.00 0.00 38.38 2.41
486 487 3.138283 TCCATCCACTCAAACCTCTTTGT 59.862 43.478 0.00 0.00 38.38 2.83
487 488 3.754965 TCCATCCACTCAAACCTCTTTG 58.245 45.455 0.00 0.00 38.56 2.77
488 489 4.453480 TTCCATCCACTCAAACCTCTTT 57.547 40.909 0.00 0.00 0.00 2.52
489 490 4.453480 TTTCCATCCACTCAAACCTCTT 57.547 40.909 0.00 0.00 0.00 2.85
490 491 4.664688 ATTTCCATCCACTCAAACCTCT 57.335 40.909 0.00 0.00 0.00 3.69
491 492 6.830838 AGATAATTTCCATCCACTCAAACCTC 59.169 38.462 0.00 0.00 0.00 3.85
492 493 6.735556 AGATAATTTCCATCCACTCAAACCT 58.264 36.000 0.00 0.00 0.00 3.50
493 494 7.410120 AAGATAATTTCCATCCACTCAAACC 57.590 36.000 0.00 0.00 0.00 3.27
494 495 8.522830 TGAAAGATAATTTCCATCCACTCAAAC 58.477 33.333 0.00 0.00 0.00 2.93
495 496 8.648698 TGAAAGATAATTTCCATCCACTCAAA 57.351 30.769 0.00 0.00 0.00 2.69
496 497 8.648698 TTGAAAGATAATTTCCATCCACTCAA 57.351 30.769 0.00 0.00 0.00 3.02
497 498 8.648698 TTTGAAAGATAATTTCCATCCACTCA 57.351 30.769 0.00 0.00 0.00 3.41
499 500 9.880157 CATTTTGAAAGATAATTTCCATCCACT 57.120 29.630 0.00 0.00 0.00 4.00
500 501 9.657419 ACATTTTGAAAGATAATTTCCATCCAC 57.343 29.630 0.00 0.00 0.00 4.02
524 525 9.967451 TTTTCCATAGAATCCATTTGTACTACA 57.033 29.630 0.00 0.00 0.00 2.74
546 547 7.601073 GGATTGACATCCTTGGAAATTTTTC 57.399 36.000 0.00 0.00 45.41 2.29
560 561 5.518847 TCGTTTGATTCGTAGGATTGACATC 59.481 40.000 0.00 0.00 0.00 3.06
561 562 5.416083 TCGTTTGATTCGTAGGATTGACAT 58.584 37.500 0.00 0.00 0.00 3.06
562 563 4.811908 TCGTTTGATTCGTAGGATTGACA 58.188 39.130 0.00 0.00 0.00 3.58
563 564 5.119588 TGTTCGTTTGATTCGTAGGATTGAC 59.880 40.000 0.00 0.00 0.00 3.18
564 565 5.231702 TGTTCGTTTGATTCGTAGGATTGA 58.768 37.500 0.00 0.00 0.00 2.57
565 566 5.524511 TGTTCGTTTGATTCGTAGGATTG 57.475 39.130 0.00 0.00 0.00 2.67
566 567 5.872617 TGATGTTCGTTTGATTCGTAGGATT 59.127 36.000 0.00 0.00 0.00 3.01
567 568 5.291128 GTGATGTTCGTTTGATTCGTAGGAT 59.709 40.000 0.00 0.00 0.00 3.24
568 569 4.624024 GTGATGTTCGTTTGATTCGTAGGA 59.376 41.667 0.00 0.00 0.00 2.94
569 570 4.387559 TGTGATGTTCGTTTGATTCGTAGG 59.612 41.667 0.00 0.00 0.00 3.18
570 571 5.344933 TCTGTGATGTTCGTTTGATTCGTAG 59.655 40.000 0.00 0.00 0.00 3.51
571 572 5.224135 TCTGTGATGTTCGTTTGATTCGTA 58.776 37.500 0.00 0.00 0.00 3.43
572 573 4.055360 TCTGTGATGTTCGTTTGATTCGT 58.945 39.130 0.00 0.00 0.00 3.85
573 574 4.645667 TCTGTGATGTTCGTTTGATTCG 57.354 40.909 0.00 0.00 0.00 3.34
574 575 7.678194 TTTTTCTGTGATGTTCGTTTGATTC 57.322 32.000 0.00 0.00 0.00 2.52
641 642 4.956075 GGATTAGGGCTCCTTTGATTCAAA 59.044 41.667 11.19 11.19 34.61 2.69
642 643 4.230502 AGGATTAGGGCTCCTTTGATTCAA 59.769 41.667 0.00 0.00 40.29 2.69
643 644 3.788142 AGGATTAGGGCTCCTTTGATTCA 59.212 43.478 0.00 0.00 40.29 2.57
644 645 4.445557 AGGATTAGGGCTCCTTTGATTC 57.554 45.455 0.00 0.00 40.29 2.52
651 652 1.832912 CGCAAGGATTAGGGCTCCT 59.167 57.895 0.00 0.00 45.21 3.69
652 653 4.464262 CGCAAGGATTAGGGCTCC 57.536 61.111 0.00 0.00 0.00 4.70
664 665 1.270907 ATATCCTCCTAGCCCGCAAG 58.729 55.000 0.00 0.00 0.00 4.01
679 680 6.981559 GGCCGACAAATAGGAATCTCTATATC 59.018 42.308 0.00 0.00 30.44 1.63
680 681 6.127026 GGGCCGACAAATAGGAATCTCTATAT 60.127 42.308 0.00 0.00 30.44 0.86
681 682 5.187186 GGGCCGACAAATAGGAATCTCTATA 59.813 44.000 0.00 0.00 30.44 1.31
773 774 0.179225 CGCCAACGAATTGAAGTCCG 60.179 55.000 0.00 0.00 43.93 4.79
916 917 2.754012 ATCTCTCTCTCCCTCTGTGG 57.246 55.000 0.00 0.00 0.00 4.17
952 955 2.235155 TCCTAGATCTCGATCTCTCCGG 59.765 54.545 12.39 0.00 44.37 5.14
953 956 3.603158 TCCTAGATCTCGATCTCTCCG 57.397 52.381 12.39 1.81 44.37 4.63
979 985 3.728279 CTAGCAACGGCCGGTACCC 62.728 68.421 31.76 14.95 42.56 3.69
980 986 2.202837 CTAGCAACGGCCGGTACC 60.203 66.667 31.76 17.78 42.56 3.34
981 987 2.889018 GCTAGCAACGGCCGGTAC 60.889 66.667 31.76 19.81 42.56 3.34
1045 1051 4.432741 GGAGGAGTTGGGGCTGGC 62.433 72.222 0.00 0.00 0.00 4.85
1490 1496 2.951475 GAACAAGTGGGGTGCACGGA 62.951 60.000 11.45 0.00 0.00 4.69
1492 1498 2.892334 CGAACAAGTGGGGTGCACG 61.892 63.158 11.45 0.00 0.00 5.34
1546 1552 4.695606 ACAAGGGGTTGGAATCTAGTAGA 58.304 43.478 1.45 1.45 0.00 2.59
1627 1633 4.178956 ACACACTTTCCAAACCATAGGT 57.821 40.909 0.00 0.00 37.65 3.08
1721 1727 0.467804 TGTACCTGCTGTGCTTGTGA 59.532 50.000 0.00 0.00 0.00 3.58
1732 1738 4.621747 GCCATCTACTATCCATGTACCTGC 60.622 50.000 0.00 0.00 0.00 4.85
1736 1742 6.102897 ACAAGCCATCTACTATCCATGTAC 57.897 41.667 0.00 0.00 0.00 2.90
1820 1827 9.673454 CTATTAGTGTAAATGATACGCTACACA 57.327 33.333 12.31 0.00 44.22 3.72
1848 1855 6.899393 TTGGCATCTGTATTTTCTCAACTT 57.101 33.333 0.00 0.00 0.00 2.66
1875 1882 3.904339 GCCTAGTCATATTTGGGAGGAGA 59.096 47.826 0.00 0.00 0.00 3.71
1989 1996 2.942376 TGTATGGATGGCAAAAGCTACG 59.058 45.455 0.00 0.00 0.00 3.51
2065 2072 9.816787 ATAACAGAAAAGGGACCTTGTTAATTA 57.183 29.630 14.10 8.00 36.26 1.40
2093 2100 0.833287 TATCCAGAGGAGCCTGCAAC 59.167 55.000 0.00 0.00 34.05 4.17
2137 2144 0.534412 CAAGCGAGGAGGATGACTGT 59.466 55.000 0.00 0.00 0.00 3.55
2479 2487 3.428534 GGGTGAATAAGCTTTTTGCAACG 59.571 43.478 3.20 0.00 45.94 4.10
2758 2769 5.396213 CCCTTTCACATGTTCCCTTTTTGAA 60.396 40.000 0.00 0.00 0.00 2.69
2819 2830 2.880268 TGTCAGAAACATGTTCAGCTGG 59.120 45.455 24.06 0.00 31.20 4.85
2839 2850 2.080654 AGGTAGAGCTAGAGGGCTTG 57.919 55.000 0.00 0.00 43.20 4.01
2897 2908 5.506317 CGCCTTCAAAGAGATCAAAGTTTGT 60.506 40.000 15.08 3.21 32.74 2.83
2953 2964 3.726557 AGGCCTTCATTGTCAAGATCA 57.273 42.857 0.00 0.00 0.00 2.92
3147 3158 2.577563 TGGATCTGGAAAAGCTGGATCA 59.422 45.455 0.00 0.00 35.76 2.92
3483 3494 6.295249 TGTGATGTTCAGTTCTATTCACCAA 58.705 36.000 0.00 0.00 0.00 3.67
3530 3541 4.909696 AGATCATCTCAGTTAGTGGTCG 57.090 45.455 0.00 0.00 0.00 4.79
3604 3615 4.997395 GTGTAATGCTGAAAGAACTCCTCA 59.003 41.667 0.00 0.00 34.07 3.86
4009 4029 7.509141 AATCTGTGTAATGACATCACAACAA 57.491 32.000 10.25 2.07 40.70 2.83
4052 4072 1.707427 AGAGATGGGCAGGAACAAAGT 59.293 47.619 0.00 0.00 0.00 2.66
4100 4120 3.494048 CCATCCACATAAGGAGAGAGTGC 60.494 52.174 0.00 0.00 41.90 4.40
4246 4266 2.450609 TCTGGACGCCTGTTTTCTAC 57.549 50.000 0.00 0.00 0.00 2.59
4278 4298 2.084089 TACGTGTCTCTCCCCACCCA 62.084 60.000 0.00 0.00 0.00 4.51
4362 4382 7.869016 TCTCTATTCACTTTAACAGACAACG 57.131 36.000 0.00 0.00 0.00 4.10
4397 4417 3.833732 TGGTACCACTGGTATTTTTGCA 58.166 40.909 11.60 0.00 40.54 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.