Multiple sequence alignment - TraesCS2A01G253200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G253200 chr2A 100.000 4754 0 0 1 4754 385007651 385002898 0.000000e+00 8780.0
1 TraesCS2A01G253200 chr2A 92.090 177 13 1 4455 4630 235712056 235712232 1.020000e-61 248.0
2 TraesCS2A01G253200 chr2A 97.826 92 1 1 4052 4143 618975031 618975121 1.770000e-34 158.0
3 TraesCS2A01G253200 chr2A 100.000 34 0 0 4652 4685 451816000 451816033 3.970000e-06 63.9
4 TraesCS2A01G253200 chr2B 95.097 3875 109 21 199 4055 374204342 374208153 0.000000e+00 6028.0
5 TraesCS2A01G253200 chr2B 91.529 425 11 2 4202 4601 374208167 374208591 3.210000e-156 562.0
6 TraesCS2A01G253200 chr2B 93.103 174 12 0 1 174 317261334 317261507 6.110000e-64 255.0
7 TraesCS2A01G253200 chr2B 97.222 36 1 0 4650 4685 1397376 1397411 1.430000e-05 62.1
8 TraesCS2A01G253200 chr2D 95.430 3567 103 21 202 3744 306247998 306251528 0.000000e+00 5629.0
9 TraesCS2A01G253200 chr2D 96.256 454 16 1 4202 4654 306251971 306252424 0.000000e+00 743.0
10 TraesCS2A01G253200 chr2D 96.190 315 10 2 3743 4055 306251643 306251957 9.120000e-142 514.0
11 TraesCS2A01G253200 chr2D 88.152 211 19 6 4422 4630 553358802 553358596 3.670000e-61 246.0
12 TraesCS2A01G253200 chr2D 97.222 36 1 0 4650 4685 617733735 617733770 1.430000e-05 62.1
13 TraesCS2A01G253200 chr5A 100.000 142 0 0 1954 2095 400867606 400867465 3.650000e-66 263.0
14 TraesCS2A01G253200 chr5A 92.442 172 13 0 3 174 170214599 170214428 3.670000e-61 246.0
15 TraesCS2A01G253200 chr5D 92.614 176 13 0 4455 4630 6115927 6116102 2.200000e-63 254.0
16 TraesCS2A01G253200 chr5D 100.000 33 0 0 4653 4685 518922872 518922840 1.430000e-05 62.1
17 TraesCS2A01G253200 chr1A 91.954 174 14 0 1 174 582286713 582286540 1.320000e-60 244.0
18 TraesCS2A01G253200 chr1A 93.182 44 2 1 4645 4688 492045255 492045213 3.970000e-06 63.9
19 TraesCS2A01G253200 chr3D 90.230 174 17 0 1 174 573890376 573890549 1.330000e-55 228.0
20 TraesCS2A01G253200 chr3D 100.000 29 0 0 4684 4712 560805900 560805872 2.000000e-03 54.7
21 TraesCS2A01G253200 chr1D 88.462 182 15 4 1 179 484566967 484566789 1.040000e-51 215.0
22 TraesCS2A01G253200 chr1D 88.136 177 15 4 1 174 484572149 484571976 6.240000e-49 206.0
23 TraesCS2A01G253200 chr1D 100.000 33 0 0 4653 4685 122836802 122836834 1.430000e-05 62.1
24 TraesCS2A01G253200 chr4D 88.701 177 14 4 1 174 490380268 490380095 1.340000e-50 211.0
25 TraesCS2A01G253200 chr4D 95.833 96 2 2 4049 4144 447129601 447129508 2.290000e-33 154.0
26 TraesCS2A01G253200 chr5B 88.636 176 15 4 5 176 429177801 429177627 4.820000e-50 209.0
27 TraesCS2A01G253200 chr6D 87.429 175 15 6 5 174 123028044 123028216 1.350000e-45 195.0
28 TraesCS2A01G253200 chr6D 93.137 102 4 3 4043 4143 348279890 348279989 3.830000e-31 147.0
29 TraesCS2A01G253200 chr6D 97.222 36 1 0 4650 4685 445769502 445769537 1.430000e-05 62.1
30 TraesCS2A01G253200 chr3B 93.636 110 3 4 4046 4153 18780637 18780530 1.370000e-35 161.0
31 TraesCS2A01G253200 chr3B 96.809 94 3 0 4045 4138 808978484 808978577 1.770000e-34 158.0
32 TraesCS2A01G253200 chr3B 95.789 95 2 2 4049 4142 777762568 777762475 8.240000e-33 152.0
33 TraesCS2A01G253200 chr7B 92.523 107 4 4 4054 4157 412820928 412820823 2.960000e-32 150.0
34 TraesCS2A01G253200 chr3A 94.000 100 5 1 4046 4145 391475480 391475382 2.960000e-32 150.0
35 TraesCS2A01G253200 chr6A 92.381 105 6 2 4054 4157 553003278 553003175 1.070000e-31 148.0
36 TraesCS2A01G253200 chr4A 93.182 88 6 0 4051 4138 698304712 698304799 3.860000e-26 130.0
37 TraesCS2A01G253200 chr1B 91.667 48 1 3 4641 4685 550416712 550416759 3.970000e-06 63.9
38 TraesCS2A01G253200 chrUn 100.000 33 0 0 4653 4685 62406350 62406318 1.430000e-05 62.1
39 TraesCS2A01G253200 chr6B 100.000 28 0 0 1233 1260 598771664 598771691 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G253200 chr2A 385002898 385007651 4753 True 8780.000000 8780 100.000000 1 4754 1 chr2A.!!$R1 4753
1 TraesCS2A01G253200 chr2B 374204342 374208591 4249 False 3295.000000 6028 93.313000 199 4601 2 chr2B.!!$F3 4402
2 TraesCS2A01G253200 chr2D 306247998 306252424 4426 False 2295.333333 5629 95.958667 202 4654 3 chr2D.!!$F2 4452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.108756 GGAACTGCTCGACACCCTAC 60.109 60.0 0.0 0.0 0.00 3.18 F
79 80 0.317479 AACTGCTCGACACCCTACAC 59.683 55.0 0.0 0.0 0.00 2.90 F
1878 1919 0.176449 TGTCTGCTGATGATCCCACG 59.824 55.0 0.0 0.0 0.00 4.94 F
2092 2133 0.179037 TGCAGAGGGCTATGATGTGC 60.179 55.0 0.0 0.0 45.15 4.57 F
3204 3245 0.607489 CAACCCTGCCAAGAGACCAG 60.607 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1079 0.404040 ACAGGAAATTGGCGGAGGAA 59.596 50.000 0.00 0.00 0.00 3.36 R
2031 2072 0.581529 TCTTGAACTTGCGTTGCTCG 59.418 50.000 0.00 0.00 43.12 5.03 R
3482 3523 1.200716 CTTCTTTGATGCACGCCACAT 59.799 47.619 0.00 0.00 0.00 3.21 R
3552 3593 1.667724 GGCACCTCAATCTTGACATCG 59.332 52.381 0.00 0.00 32.90 3.84 R
4146 4307 0.548031 TGGACCATGCAAGGATCTCC 59.452 55.000 16.33 11.91 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.169836 CGGAAGCCATCTTAACATAAACC 57.830 43.478 0.00 0.00 31.48 3.27
32 33 4.638421 CGGAAGCCATCTTAACATAAACCA 59.362 41.667 0.00 0.00 31.48 3.67
33 34 5.220854 CGGAAGCCATCTTAACATAAACCAG 60.221 44.000 0.00 0.00 31.48 4.00
34 35 5.652452 GGAAGCCATCTTAACATAAACCAGT 59.348 40.000 0.00 0.00 31.48 4.00
35 36 6.826741 GGAAGCCATCTTAACATAAACCAGTA 59.173 38.462 0.00 0.00 31.48 2.74
36 37 7.201705 GGAAGCCATCTTAACATAAACCAGTAC 60.202 40.741 0.00 0.00 31.48 2.73
37 38 6.120220 AGCCATCTTAACATAAACCAGTACC 58.880 40.000 0.00 0.00 0.00 3.34
38 39 5.883673 GCCATCTTAACATAAACCAGTACCA 59.116 40.000 0.00 0.00 0.00 3.25
39 40 6.546034 GCCATCTTAACATAAACCAGTACCAT 59.454 38.462 0.00 0.00 0.00 3.55
40 41 7.468631 GCCATCTTAACATAAACCAGTACCATG 60.469 40.741 0.00 0.00 0.00 3.66
41 42 7.556275 CCATCTTAACATAAACCAGTACCATGT 59.444 37.037 0.00 0.00 0.00 3.21
42 43 9.607988 CATCTTAACATAAACCAGTACCATGTA 57.392 33.333 0.00 0.00 0.00 2.29
47 48 8.466617 AACATAAACCAGTACCATGTAAAACA 57.533 30.769 0.00 0.00 0.00 2.83
48 49 8.644374 ACATAAACCAGTACCATGTAAAACAT 57.356 30.769 0.00 0.00 39.91 2.71
49 50 9.742144 ACATAAACCAGTACCATGTAAAACATA 57.258 29.630 0.00 0.00 36.53 2.29
68 69 4.816385 ACATAATATGTTGGGAACTGCTCG 59.184 41.667 0.00 0.00 41.63 5.03
69 70 3.627395 AATATGTTGGGAACTGCTCGA 57.373 42.857 0.00 0.00 0.00 4.04
70 71 2.380084 TATGTTGGGAACTGCTCGAC 57.620 50.000 0.00 0.00 31.43 4.20
71 72 0.396435 ATGTTGGGAACTGCTCGACA 59.604 50.000 0.00 0.00 45.38 4.35
72 73 0.531974 TGTTGGGAACTGCTCGACAC 60.532 55.000 0.00 0.00 36.42 3.67
73 74 1.070786 TTGGGAACTGCTCGACACC 59.929 57.895 0.00 0.00 0.00 4.16
74 75 2.047179 GGGAACTGCTCGACACCC 60.047 66.667 0.00 0.00 0.00 4.61
75 76 2.584391 GGGAACTGCTCGACACCCT 61.584 63.158 0.00 0.00 35.03 4.34
76 77 1.255667 GGGAACTGCTCGACACCCTA 61.256 60.000 0.00 0.00 35.03 3.53
77 78 0.108756 GGAACTGCTCGACACCCTAC 60.109 60.000 0.00 0.00 0.00 3.18
78 79 0.601558 GAACTGCTCGACACCCTACA 59.398 55.000 0.00 0.00 0.00 2.74
79 80 0.317479 AACTGCTCGACACCCTACAC 59.683 55.000 0.00 0.00 0.00 2.90
80 81 1.154016 CTGCTCGACACCCTACACG 60.154 63.158 0.00 0.00 0.00 4.49
81 82 2.181021 GCTCGACACCCTACACGG 59.819 66.667 0.00 0.00 0.00 4.94
82 83 2.338015 GCTCGACACCCTACACGGA 61.338 63.158 0.00 0.00 33.16 4.69
83 84 1.801332 CTCGACACCCTACACGGAG 59.199 63.158 0.00 0.00 33.16 4.63
95 96 3.688086 ACGGAGTGTGGCTCTCTC 58.312 61.111 9.50 9.50 42.51 3.20
96 97 1.228583 ACGGAGTGTGGCTCTCTCA 60.229 57.895 17.29 0.00 42.51 3.27
97 98 0.613292 ACGGAGTGTGGCTCTCTCAT 60.613 55.000 17.29 5.30 42.51 2.90
98 99 0.534412 CGGAGTGTGGCTCTCTCATT 59.466 55.000 17.29 0.00 43.62 2.57
99 100 1.751351 CGGAGTGTGGCTCTCTCATTA 59.249 52.381 17.29 0.00 43.62 1.90
100 101 2.363680 CGGAGTGTGGCTCTCTCATTAT 59.636 50.000 17.29 0.00 43.62 1.28
101 102 3.570125 CGGAGTGTGGCTCTCTCATTATA 59.430 47.826 17.29 0.00 43.62 0.98
102 103 4.219507 CGGAGTGTGGCTCTCTCATTATAT 59.780 45.833 17.29 0.00 43.62 0.86
103 104 5.416013 CGGAGTGTGGCTCTCTCATTATATA 59.584 44.000 17.29 0.00 43.62 0.86
104 105 6.404184 CGGAGTGTGGCTCTCTCATTATATAG 60.404 46.154 17.29 0.00 43.62 1.31
105 106 6.661377 GGAGTGTGGCTCTCTCATTATATAGA 59.339 42.308 17.29 0.00 43.62 1.98
106 107 7.148086 GGAGTGTGGCTCTCTCATTATATAGAG 60.148 44.444 17.29 0.00 43.62 2.43
107 108 6.663093 AGTGTGGCTCTCTCATTATATAGAGG 59.337 42.308 0.00 0.00 39.79 3.69
108 109 6.435904 GTGTGGCTCTCTCATTATATAGAGGT 59.564 42.308 0.00 0.00 39.79 3.85
109 110 7.612244 GTGTGGCTCTCTCATTATATAGAGGTA 59.388 40.741 0.00 0.00 39.79 3.08
110 111 7.612244 TGTGGCTCTCTCATTATATAGAGGTAC 59.388 40.741 0.00 0.00 39.79 3.34
111 112 7.067737 GTGGCTCTCTCATTATATAGAGGTACC 59.932 44.444 2.73 2.73 39.79 3.34
112 113 6.548251 GGCTCTCTCATTATATAGAGGTACCC 59.452 46.154 8.74 0.00 39.79 3.69
113 114 7.120051 GCTCTCTCATTATATAGAGGTACCCA 58.880 42.308 8.74 0.00 39.79 4.51
114 115 7.067737 GCTCTCTCATTATATAGAGGTACCCAC 59.932 44.444 8.74 3.19 39.79 4.61
115 116 7.110810 TCTCTCATTATATAGAGGTACCCACG 58.889 42.308 8.74 0.00 39.79 4.94
116 117 6.185511 TCTCATTATATAGAGGTACCCACGG 58.814 44.000 8.74 0.00 32.76 4.94
117 118 5.266788 TCATTATATAGAGGTACCCACGGG 58.733 45.833 8.74 0.00 42.03 5.28
118 119 9.662908 TCTCATTATATAGAGGTACCCACGGGG 62.663 48.148 8.74 0.00 39.47 5.73
127 128 4.116926 CCCACGGGGTACAGTACA 57.883 61.111 12.89 0.00 38.25 2.90
128 129 2.364353 CCCACGGGGTACAGTACAA 58.636 57.895 12.89 0.00 38.25 2.41
129 130 0.906775 CCCACGGGGTACAGTACAAT 59.093 55.000 12.89 0.00 38.25 2.71
130 131 1.406341 CCCACGGGGTACAGTACAATG 60.406 57.143 12.89 3.76 38.25 2.82
131 132 1.276989 CCACGGGGTACAGTACAATGT 59.723 52.381 12.89 4.36 37.19 2.71
132 133 2.289819 CCACGGGGTACAGTACAATGTT 60.290 50.000 12.89 0.00 34.56 2.71
133 134 3.055963 CCACGGGGTACAGTACAATGTTA 60.056 47.826 12.89 0.00 34.56 2.41
134 135 3.928375 CACGGGGTACAGTACAATGTTAC 59.072 47.826 12.89 0.00 34.56 2.50
135 136 3.577848 ACGGGGTACAGTACAATGTTACA 59.422 43.478 12.89 0.00 34.56 2.41
136 137 4.040217 ACGGGGTACAGTACAATGTTACAA 59.960 41.667 12.89 0.00 34.56 2.41
137 138 5.180271 CGGGGTACAGTACAATGTTACAAT 58.820 41.667 12.89 0.00 34.56 2.71
138 139 6.070881 ACGGGGTACAGTACAATGTTACAATA 60.071 38.462 12.89 0.00 34.56 1.90
139 140 6.987992 CGGGGTACAGTACAATGTTACAATAT 59.012 38.462 12.89 0.00 34.56 1.28
140 141 8.143193 CGGGGTACAGTACAATGTTACAATATA 58.857 37.037 12.89 0.00 34.56 0.86
154 155 9.627123 ATGTTACAATATATGTGTACAAAGGCT 57.373 29.630 0.00 0.00 43.77 4.58
166 167 9.929180 ATGTGTACAAAGGCTACATATATACAG 57.071 33.333 0.00 0.00 30.79 2.74
167 168 8.920174 TGTGTACAAAGGCTACATATATACAGT 58.080 33.333 0.00 0.00 0.00 3.55
168 169 9.408069 GTGTACAAAGGCTACATATATACAGTC 57.592 37.037 0.00 0.00 0.00 3.51
169 170 9.363401 TGTACAAAGGCTACATATATACAGTCT 57.637 33.333 0.00 0.00 0.00 3.24
175 176 8.582657 AGGCTACATATATACAGTCTAACAGG 57.417 38.462 0.00 0.00 0.00 4.00
176 177 7.616150 AGGCTACATATATACAGTCTAACAGGG 59.384 40.741 0.00 0.00 0.00 4.45
177 178 7.614583 GGCTACATATATACAGTCTAACAGGGA 59.385 40.741 0.00 0.00 0.00 4.20
178 179 9.021807 GCTACATATATACAGTCTAACAGGGAA 57.978 37.037 0.00 0.00 0.00 3.97
184 185 4.772886 ACAGTCTAACAGGGAAAACAGT 57.227 40.909 0.00 0.00 0.00 3.55
185 186 5.112129 ACAGTCTAACAGGGAAAACAGTT 57.888 39.130 0.00 0.00 0.00 3.16
186 187 5.506708 ACAGTCTAACAGGGAAAACAGTTT 58.493 37.500 0.00 0.00 0.00 2.66
187 188 5.357032 ACAGTCTAACAGGGAAAACAGTTTG 59.643 40.000 0.00 0.00 0.00 2.93
188 189 5.357032 CAGTCTAACAGGGAAAACAGTTTGT 59.643 40.000 0.00 0.00 0.00 2.83
189 190 6.540914 CAGTCTAACAGGGAAAACAGTTTGTA 59.459 38.462 0.00 0.00 0.00 2.41
190 191 6.766467 AGTCTAACAGGGAAAACAGTTTGTAG 59.234 38.462 0.00 0.00 0.00 2.74
191 192 6.541278 GTCTAACAGGGAAAACAGTTTGTAGT 59.459 38.462 0.00 0.00 0.00 2.73
192 193 5.830000 AACAGGGAAAACAGTTTGTAGTC 57.170 39.130 0.00 0.00 0.00 2.59
193 194 5.112129 ACAGGGAAAACAGTTTGTAGTCT 57.888 39.130 0.00 0.00 0.00 3.24
194 195 6.243216 ACAGGGAAAACAGTTTGTAGTCTA 57.757 37.500 0.00 0.00 0.00 2.59
195 196 6.655930 ACAGGGAAAACAGTTTGTAGTCTAA 58.344 36.000 0.00 0.00 0.00 2.10
196 197 6.541278 ACAGGGAAAACAGTTTGTAGTCTAAC 59.459 38.462 0.00 0.00 0.00 2.34
197 198 6.540914 CAGGGAAAACAGTTTGTAGTCTAACA 59.459 38.462 0.00 0.00 33.17 2.41
205 206 5.179555 CAGTTTGTAGTCTAACAGGGAAAGC 59.820 44.000 0.00 0.00 33.17 3.51
241 242 5.048434 GCAAAGTAGAGAGCAAAAAGGTGAT 60.048 40.000 0.00 0.00 0.00 3.06
312 313 2.437359 CCCAGCTAGCCAGTGCAC 60.437 66.667 12.13 9.40 41.13 4.57
332 339 4.276678 GCACTGCATCATCCAGCTAATAAA 59.723 41.667 0.00 0.00 33.65 1.40
333 340 5.048224 GCACTGCATCATCCAGCTAATAAAT 60.048 40.000 0.00 0.00 33.65 1.40
335 342 7.308770 GCACTGCATCATCCAGCTAATAAATAA 60.309 37.037 0.00 0.00 33.65 1.40
336 343 8.019669 CACTGCATCATCCAGCTAATAAATAAC 58.980 37.037 0.00 0.00 33.65 1.89
337 344 7.720957 ACTGCATCATCCAGCTAATAAATAACA 59.279 33.333 0.00 0.00 33.65 2.41
338 345 8.640063 TGCATCATCCAGCTAATAAATAACAT 57.360 30.769 0.00 0.00 0.00 2.71
549 556 7.545965 CGCCTGATTTCCCAATTATACTACTAG 59.454 40.741 0.00 0.00 0.00 2.57
565 572 5.829829 ACTACTAGTTCTATTAGCGGCAAC 58.170 41.667 0.00 0.00 0.00 4.17
566 573 4.056092 ACTAGTTCTATTAGCGGCAACC 57.944 45.455 1.45 0.00 0.00 3.77
601 608 2.770475 GCCTCTTCCCTCCCTCCC 60.770 72.222 0.00 0.00 0.00 4.30
655 662 1.881973 TGCCATTTGTTGCTCTCTGTC 59.118 47.619 0.00 0.00 0.00 3.51
656 663 2.157738 GCCATTTGTTGCTCTCTGTCT 58.842 47.619 0.00 0.00 0.00 3.41
657 664 2.095364 GCCATTTGTTGCTCTCTGTCTG 60.095 50.000 0.00 0.00 0.00 3.51
658 665 3.144506 CCATTTGTTGCTCTCTGTCTGT 58.855 45.455 0.00 0.00 0.00 3.41
665 672 2.710377 TGCTCTCTGTCTGTCTCTCTC 58.290 52.381 0.00 0.00 0.00 3.20
817 848 2.943978 CGCCTTCCGGTTCCTGAGT 61.944 63.158 0.00 0.00 0.00 3.41
818 849 1.079057 GCCTTCCGGTTCCTGAGTC 60.079 63.158 0.00 0.00 0.00 3.36
819 850 1.215647 CCTTCCGGTTCCTGAGTCG 59.784 63.158 0.00 0.00 0.00 4.18
822 853 4.052229 CCGGTTCCTGAGTCGCGT 62.052 66.667 5.77 0.00 0.00 6.01
823 854 2.049433 CGGTTCCTGAGTCGCGTT 60.049 61.111 5.77 0.00 0.00 4.84
824 855 2.087009 CGGTTCCTGAGTCGCGTTC 61.087 63.158 5.77 6.20 0.00 3.95
825 856 1.289380 GGTTCCTGAGTCGCGTTCT 59.711 57.895 5.77 6.10 0.00 3.01
878 909 3.534721 GGCCATCCGTAGCCTTATC 57.465 57.895 0.00 0.00 46.14 1.75
934 965 3.474486 TTGGCTCTCGCAGGTTGCA 62.474 57.895 1.69 0.00 45.36 4.08
987 1018 2.833631 AAAACTGGTGACCCGAGTAG 57.166 50.000 0.00 0.00 0.00 2.57
988 1019 0.320697 AAACTGGTGACCCGAGTAGC 59.679 55.000 0.00 0.00 0.00 3.58
1038 1079 1.144057 GCGGAGGGTCGTGATGAAT 59.856 57.895 0.00 0.00 0.00 2.57
1081 1122 1.228063 CTGGTGCTGCTGGTGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
1133 1174 1.493950 CCGATCCTCATCAACTGCGC 61.494 60.000 0.00 0.00 0.00 6.09
1158 1199 2.781595 ATTCCACCACCAGCGTCGAC 62.782 60.000 5.18 5.18 0.00 4.20
1470 1511 0.884704 CCAAGTTCAGTGTCCACGGG 60.885 60.000 0.00 0.00 36.20 5.28
1506 1547 3.282885 GGATTCCCAGATCAACTCAACC 58.717 50.000 0.00 0.00 0.00 3.77
1617 1658 2.425143 TCAATGCCATGGAGGTTCTC 57.575 50.000 18.40 0.00 40.61 2.87
1739 1780 2.338015 GGCTGTGTGTGGGATGCAG 61.338 63.158 0.00 0.00 0.00 4.41
1740 1781 1.302752 GCTGTGTGTGGGATGCAGA 60.303 57.895 0.00 0.00 0.00 4.26
1750 1791 2.432146 GTGGGATGCAGAGATGTACTGA 59.568 50.000 0.00 0.00 37.54 3.41
1797 1838 3.071747 GGAGGAGGTGGGATAAAGATGAC 59.928 52.174 0.00 0.00 0.00 3.06
1815 1856 8.905660 AAGATGACCATTTCATATTCTCTCTG 57.094 34.615 0.00 0.00 41.43 3.35
1878 1919 0.176449 TGTCTGCTGATGATCCCACG 59.824 55.000 0.00 0.00 0.00 4.94
2031 2072 0.393537 AGCTGCAGTATGACAAGGCC 60.394 55.000 16.64 0.00 39.69 5.19
2092 2133 0.179037 TGCAGAGGGCTATGATGTGC 60.179 55.000 0.00 0.00 45.15 4.57
2296 2337 1.201429 AACCGTCAGGATTGGAGGCT 61.201 55.000 0.00 0.00 41.02 4.58
2308 2349 2.431683 GAGGCTTCAGTGGTGGCA 59.568 61.111 11.10 0.00 0.00 4.92
2456 2497 1.067354 CAGCAAAGCCAAGGACAATCC 60.067 52.381 0.00 0.00 36.58 3.01
2467 2508 1.039233 GGACAATCCCCATGGTGCTG 61.039 60.000 11.73 4.97 0.00 4.41
2492 2533 1.718280 ACCCGTTCTCCAACTCTTCT 58.282 50.000 0.00 0.00 0.00 2.85
2562 2603 2.157738 GCAGAAATCAGAACAGCCACT 58.842 47.619 0.00 0.00 0.00 4.00
2664 2705 3.021695 GGTGGCAATTAAGAGGGGTTAC 58.978 50.000 0.00 0.00 0.00 2.50
2931 2972 0.836606 TTCACACTGGGCTTGACAGA 59.163 50.000 0.00 0.00 39.24 3.41
2977 3018 7.771361 TCAAGACTACCAACATTTTGTTAGACA 59.229 33.333 3.47 0.00 38.77 3.41
3204 3245 0.607489 CAACCCTGCCAAGAGACCAG 60.607 60.000 0.00 0.00 0.00 4.00
3245 3286 0.746063 CTCAACAGGCAAAGGCACAA 59.254 50.000 0.00 0.00 43.71 3.33
3305 3346 3.961480 TTACACACTGGAGTCCATCAG 57.039 47.619 13.56 8.16 37.07 2.90
3306 3347 2.015456 ACACACTGGAGTCCATCAGA 57.985 50.000 13.56 0.00 35.20 3.27
3308 3349 2.037772 ACACACTGGAGTCCATCAGAAC 59.962 50.000 13.56 0.00 35.20 3.01
3482 3523 2.116238 GCCTTCTGATGTACCTACCCA 58.884 52.381 0.00 0.00 0.00 4.51
3552 3593 2.096496 CGATTCAGATGGGCAAGTTGTC 59.904 50.000 4.48 0.81 0.00 3.18
3591 3632 3.026694 GCCATGATACAGAAGGGCTTTT 58.973 45.455 0.00 0.00 38.37 2.27
3697 3738 7.123697 CCATATGTCGAGGTCCCTACAATATAA 59.876 40.741 1.24 0.00 0.00 0.98
3860 4019 9.671279 AGAGAAAACAAATTGAACAATTTCCTT 57.329 25.926 18.58 13.16 46.01 3.36
4056 4217 9.662947 ACTTATCGCTTTTGGTAATTAAGTACT 57.337 29.630 12.40 0.00 0.00 2.73
4058 4219 6.973229 TCGCTTTTGGTAATTAAGTACTCC 57.027 37.500 12.40 0.00 0.00 3.85
4059 4220 5.876460 TCGCTTTTGGTAATTAAGTACTCCC 59.124 40.000 12.40 0.00 0.00 4.30
4060 4221 5.878669 CGCTTTTGGTAATTAAGTACTCCCT 59.121 40.000 12.40 0.00 0.00 4.20
4061 4222 6.036844 CGCTTTTGGTAATTAAGTACTCCCTC 59.963 42.308 12.40 0.00 0.00 4.30
4062 4223 7.110810 GCTTTTGGTAATTAAGTACTCCCTCT 58.889 38.462 12.40 0.00 0.00 3.69
4063 4224 7.065923 GCTTTTGGTAATTAAGTACTCCCTCTG 59.934 40.741 12.40 0.61 0.00 3.35
4064 4225 7.563724 TTTGGTAATTAAGTACTCCCTCTGT 57.436 36.000 12.40 0.00 0.00 3.41
4065 4226 8.669055 TTTGGTAATTAAGTACTCCCTCTGTA 57.331 34.615 12.40 0.00 0.00 2.74
4066 4227 8.669055 TTGGTAATTAAGTACTCCCTCTGTAA 57.331 34.615 12.40 0.00 0.00 2.41
4067 4228 8.669055 TGGTAATTAAGTACTCCCTCTGTAAA 57.331 34.615 12.40 0.00 0.00 2.01
4068 4229 8.534496 TGGTAATTAAGTACTCCCTCTGTAAAC 58.466 37.037 12.40 0.00 0.00 2.01
4069 4230 8.756927 GGTAATTAAGTACTCCCTCTGTAAACT 58.243 37.037 12.40 0.00 0.00 2.66
4080 4241 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
4081 4242 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
4082 4243 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
4083 4244 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
4100 4261 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
4101 4262 9.918630 AAAAGCGTTTAGATCACTACTTTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
4104 4265 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
4105 4266 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
4132 4293 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
4133 4294 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
4134 4295 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
4135 4296 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
4136 4297 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4137 4298 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4146 4307 8.860780 AGTTTACGGAGGGAGTATAGTATAAG 57.139 38.462 0.00 0.00 0.00 1.73
4147 4308 7.887495 AGTTTACGGAGGGAGTATAGTATAAGG 59.113 40.741 0.00 0.00 0.00 2.69
4148 4309 7.574021 TTACGGAGGGAGTATAGTATAAGGA 57.426 40.000 0.00 0.00 0.00 3.36
4149 4310 6.064735 ACGGAGGGAGTATAGTATAAGGAG 57.935 45.833 0.00 0.00 0.00 3.69
4150 4311 5.789575 ACGGAGGGAGTATAGTATAAGGAGA 59.210 44.000 0.00 0.00 0.00 3.71
4151 4312 6.447735 ACGGAGGGAGTATAGTATAAGGAGAT 59.552 42.308 0.00 0.00 0.00 2.75
4152 4313 6.993902 CGGAGGGAGTATAGTATAAGGAGATC 59.006 46.154 0.00 0.00 0.00 2.75
4153 4314 7.292319 GGAGGGAGTATAGTATAAGGAGATCC 58.708 46.154 0.00 0.00 0.00 3.36
4164 4325 0.842635 AGGAGATCCTTGCATGGTCC 59.157 55.000 17.54 16.34 46.09 4.46
4165 4326 0.548031 GGAGATCCTTGCATGGTCCA 59.452 55.000 17.54 0.00 0.00 4.02
4166 4327 1.144503 GGAGATCCTTGCATGGTCCAT 59.855 52.381 17.54 0.00 0.00 3.41
4167 4328 2.373169 GGAGATCCTTGCATGGTCCATA 59.627 50.000 17.54 0.00 0.00 2.74
4168 4329 3.181440 GGAGATCCTTGCATGGTCCATAA 60.181 47.826 17.54 0.00 0.00 1.90
4169 4330 4.508047 GGAGATCCTTGCATGGTCCATAAT 60.508 45.833 17.54 3.48 0.00 1.28
4170 4331 4.660168 AGATCCTTGCATGGTCCATAATC 58.340 43.478 17.54 11.83 0.00 1.75
4171 4332 3.228188 TCCTTGCATGGTCCATAATCC 57.772 47.619 17.54 0.00 0.00 3.01
4172 4333 2.785269 TCCTTGCATGGTCCATAATCCT 59.215 45.455 17.54 0.00 0.00 3.24
4173 4334 3.205056 TCCTTGCATGGTCCATAATCCTT 59.795 43.478 17.54 0.00 0.00 3.36
4174 4335 3.319972 CCTTGCATGGTCCATAATCCTTG 59.680 47.826 10.48 0.00 33.73 3.61
4176 4337 2.309613 GCATGGTCCATAATCCTTGCA 58.690 47.619 3.38 0.00 46.83 4.08
4177 4338 2.895404 GCATGGTCCATAATCCTTGCAT 59.105 45.455 3.38 0.00 46.83 3.96
4178 4339 3.305813 GCATGGTCCATAATCCTTGCATG 60.306 47.826 3.38 0.00 46.83 4.06
4179 4340 2.948115 TGGTCCATAATCCTTGCATGG 58.052 47.619 12.41 12.41 40.55 3.66
4180 4341 2.244510 TGGTCCATAATCCTTGCATGGT 59.755 45.455 17.54 2.96 40.18 3.55
4181 4342 3.461458 TGGTCCATAATCCTTGCATGGTA 59.539 43.478 17.54 5.12 40.18 3.25
4182 4343 3.821033 GGTCCATAATCCTTGCATGGTAC 59.179 47.826 17.54 6.45 40.18 3.34
4199 4360 5.973899 TGGTACACAATTGCACAACATAT 57.026 34.783 5.05 0.00 0.00 1.78
4335 4497 4.005650 CAGCAGAATTCCAGCAAGAGTAA 58.994 43.478 19.09 0.00 0.00 2.24
4450 4636 7.012421 AGCTTTAAGATCATTGTTTCCGGATAC 59.988 37.037 17.19 17.19 0.00 2.24
4618 4804 0.111061 TGTTTCATCCTGCCAGTGCT 59.889 50.000 0.00 0.00 38.71 4.40
4631 4817 0.679002 CAGTGCTGTAGCTGGGCATT 60.679 55.000 11.93 6.50 42.66 3.56
4639 4825 3.495331 TGTAGCTGGGCATTTTCTTGAA 58.505 40.909 0.00 0.00 0.00 2.69
4640 4826 3.894427 TGTAGCTGGGCATTTTCTTGAAA 59.106 39.130 0.00 0.00 0.00 2.69
4641 4827 4.343526 TGTAGCTGGGCATTTTCTTGAAAA 59.656 37.500 10.41 10.41 0.00 2.29
4642 4828 4.420522 AGCTGGGCATTTTCTTGAAAAA 57.579 36.364 11.78 0.00 0.00 1.94
4659 4845 9.667107 TCTTGAAAAATTTATCATCTACTCCGT 57.333 29.630 0.00 0.00 0.00 4.69
4660 4846 9.922305 CTTGAAAAATTTATCATCTACTCCGTC 57.078 33.333 0.00 0.00 0.00 4.79
4661 4847 8.433421 TGAAAAATTTATCATCTACTCCGTCC 57.567 34.615 0.00 0.00 0.00 4.79
4662 4848 7.223971 TGAAAAATTTATCATCTACTCCGTCCG 59.776 37.037 0.00 0.00 0.00 4.79
4663 4849 5.786264 AATTTATCATCTACTCCGTCCGT 57.214 39.130 0.00 0.00 0.00 4.69
4664 4850 4.825546 TTTATCATCTACTCCGTCCGTC 57.174 45.455 0.00 0.00 0.00 4.79
4665 4851 1.606903 ATCATCTACTCCGTCCGTCC 58.393 55.000 0.00 0.00 0.00 4.79
4666 4852 0.465097 TCATCTACTCCGTCCGTCCC 60.465 60.000 0.00 0.00 0.00 4.46
4667 4853 0.750546 CATCTACTCCGTCCGTCCCA 60.751 60.000 0.00 0.00 0.00 4.37
4668 4854 0.185416 ATCTACTCCGTCCGTCCCAT 59.815 55.000 0.00 0.00 0.00 4.00
4669 4855 0.839277 TCTACTCCGTCCGTCCCATA 59.161 55.000 0.00 0.00 0.00 2.74
4670 4856 1.212688 TCTACTCCGTCCGTCCCATAA 59.787 52.381 0.00 0.00 0.00 1.90
4671 4857 2.158564 TCTACTCCGTCCGTCCCATAAT 60.159 50.000 0.00 0.00 0.00 1.28
4672 4858 0.750850 ACTCCGTCCGTCCCATAATG 59.249 55.000 0.00 0.00 0.00 1.90
4673 4859 0.750850 CTCCGTCCGTCCCATAATGT 59.249 55.000 0.00 0.00 0.00 2.71
4674 4860 1.958579 CTCCGTCCGTCCCATAATGTA 59.041 52.381 0.00 0.00 0.00 2.29
4675 4861 2.363038 CTCCGTCCGTCCCATAATGTAA 59.637 50.000 0.00 0.00 0.00 2.41
4676 4862 2.363038 TCCGTCCGTCCCATAATGTAAG 59.637 50.000 0.00 0.00 0.00 2.34
4677 4863 2.363038 CCGTCCGTCCCATAATGTAAGA 59.637 50.000 0.00 0.00 0.00 2.10
4678 4864 3.378339 CGTCCGTCCCATAATGTAAGAC 58.622 50.000 0.00 0.00 0.00 3.01
4680 4866 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4681 4867 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4682 4868 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4683 4869 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4684 4870 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4685 4871 6.313411 CCGTCCCATAATGTAAGACGTTTTTA 59.687 38.462 9.63 0.00 46.62 1.52
4686 4872 7.011669 CCGTCCCATAATGTAAGACGTTTTTAT 59.988 37.037 9.63 0.00 46.62 1.40
4687 4873 7.849026 CGTCCCATAATGTAAGACGTTTTTATG 59.151 37.037 0.00 0.00 43.89 1.90
4688 4874 8.126700 GTCCCATAATGTAAGACGTTTTTATGG 58.873 37.037 15.46 15.46 42.68 2.74
4690 4876 8.215926 CCATAATGTAAGACGTTTTTATGGGA 57.784 34.615 14.93 0.00 40.81 4.37
4691 4877 8.126700 CCATAATGTAAGACGTTTTTATGGGAC 58.873 37.037 14.93 1.29 40.81 4.46
4692 4878 5.789710 ATGTAAGACGTTTTTATGGGACG 57.210 39.130 0.00 0.00 42.13 4.79
4693 4879 3.995705 TGTAAGACGTTTTTATGGGACGG 59.004 43.478 0.00 0.00 40.82 4.79
4694 4880 3.405823 AAGACGTTTTTATGGGACGGA 57.594 42.857 0.00 0.00 40.82 4.69
4695 4881 2.968675 AGACGTTTTTATGGGACGGAG 58.031 47.619 0.00 0.00 40.82 4.63
4696 4882 2.004733 GACGTTTTTATGGGACGGAGG 58.995 52.381 0.00 0.00 40.82 4.30
4697 4883 1.339342 ACGTTTTTATGGGACGGAGGG 60.339 52.381 0.00 0.00 40.82 4.30
4698 4884 1.065998 CGTTTTTATGGGACGGAGGGA 60.066 52.381 0.00 0.00 33.45 4.20
4699 4885 2.640184 GTTTTTATGGGACGGAGGGAG 58.360 52.381 0.00 0.00 0.00 4.30
4700 4886 1.961133 TTTTATGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4701 4887 2.852714 TTTATGGGACGGAGGGAGTA 57.147 50.000 0.00 0.00 0.00 2.59
4702 4888 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
4703 4889 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
4704 4890 2.191981 ATGGGACGGAGGGAGTAATT 57.808 50.000 0.00 0.00 0.00 1.40
4705 4891 1.961133 TGGGACGGAGGGAGTAATTT 58.039 50.000 0.00 0.00 0.00 1.82
4706 4892 1.835531 TGGGACGGAGGGAGTAATTTC 59.164 52.381 0.00 0.00 0.00 2.17
4707 4893 2.117051 GGGACGGAGGGAGTAATTTCT 58.883 52.381 0.00 0.00 0.00 2.52
4708 4894 3.303049 GGGACGGAGGGAGTAATTTCTA 58.697 50.000 0.00 0.00 0.00 2.10
4709 4895 3.708121 GGGACGGAGGGAGTAATTTCTAA 59.292 47.826 0.00 0.00 0.00 2.10
4710 4896 4.162888 GGGACGGAGGGAGTAATTTCTAAA 59.837 45.833 0.00 0.00 0.00 1.85
4711 4897 5.114780 GGACGGAGGGAGTAATTTCTAAAC 58.885 45.833 0.00 0.00 0.00 2.01
4712 4898 5.337813 GGACGGAGGGAGTAATTTCTAAACA 60.338 44.000 0.00 0.00 0.00 2.83
4713 4899 5.731591 ACGGAGGGAGTAATTTCTAAACAG 58.268 41.667 0.00 0.00 0.00 3.16
4714 4900 5.247792 ACGGAGGGAGTAATTTCTAAACAGT 59.752 40.000 0.00 0.00 0.00 3.55
4715 4901 6.438425 ACGGAGGGAGTAATTTCTAAACAGTA 59.562 38.462 0.00 0.00 0.00 2.74
4716 4902 7.038799 ACGGAGGGAGTAATTTCTAAACAGTAA 60.039 37.037 0.00 0.00 0.00 2.24
4717 4903 7.820872 CGGAGGGAGTAATTTCTAAACAGTAAA 59.179 37.037 0.00 0.00 0.00 2.01
4718 4904 9.163899 GGAGGGAGTAATTTCTAAACAGTAAAG 57.836 37.037 0.00 0.00 0.00 1.85
4719 4905 8.563123 AGGGAGTAATTTCTAAACAGTAAAGC 57.437 34.615 0.00 0.00 0.00 3.51
4720 4906 7.610692 AGGGAGTAATTTCTAAACAGTAAAGCC 59.389 37.037 0.00 0.00 0.00 4.35
4721 4907 7.610692 GGGAGTAATTTCTAAACAGTAAAGCCT 59.389 37.037 0.00 0.00 0.00 4.58
4722 4908 8.451748 GGAGTAATTTCTAAACAGTAAAGCCTG 58.548 37.037 0.00 0.00 38.45 4.85
4723 4909 7.817641 AGTAATTTCTAAACAGTAAAGCCTGC 58.182 34.615 0.00 0.00 35.83 4.85
4724 4910 6.901081 AATTTCTAAACAGTAAAGCCTGCT 57.099 33.333 0.00 0.00 35.83 4.24
4725 4911 6.901081 ATTTCTAAACAGTAAAGCCTGCTT 57.099 33.333 0.00 0.00 35.83 3.91
4726 4912 6.709018 TTTCTAAACAGTAAAGCCTGCTTT 57.291 33.333 19.82 19.82 46.56 3.51
4727 4913 6.709018 TTCTAAACAGTAAAGCCTGCTTTT 57.291 33.333 20.95 6.03 42.93 2.27
4728 4914 7.811117 TTCTAAACAGTAAAGCCTGCTTTTA 57.189 32.000 20.95 6.81 42.93 1.52
4729 4915 7.996098 TCTAAACAGTAAAGCCTGCTTTTAT 57.004 32.000 20.95 8.59 42.93 1.40
4730 4916 9.509956 TTCTAAACAGTAAAGCCTGCTTTTATA 57.490 29.630 20.95 2.17 42.93 0.98
4731 4917 9.681062 TCTAAACAGTAAAGCCTGCTTTTATAT 57.319 29.630 20.95 7.29 42.93 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.378610 GTTAAGATGGCTTCCGCTGC 59.621 55.000 0.00 0.00 35.56 5.25
6 7 1.737838 TGTTAAGATGGCTTCCGCTG 58.262 50.000 0.00 0.00 35.56 5.18
7 8 2.717639 ATGTTAAGATGGCTTCCGCT 57.282 45.000 0.00 0.00 35.56 5.52
8 9 4.497507 GGTTTATGTTAAGATGGCTTCCGC 60.498 45.833 0.00 0.00 35.56 5.54
9 10 4.638421 TGGTTTATGTTAAGATGGCTTCCG 59.362 41.667 0.00 0.00 35.56 4.30
10 11 5.652452 ACTGGTTTATGTTAAGATGGCTTCC 59.348 40.000 0.00 0.00 35.56 3.46
11 12 6.759497 ACTGGTTTATGTTAAGATGGCTTC 57.241 37.500 0.00 0.00 35.56 3.86
12 13 6.602009 GGTACTGGTTTATGTTAAGATGGCTT 59.398 38.462 0.00 0.00 38.15 4.35
13 14 6.120220 GGTACTGGTTTATGTTAAGATGGCT 58.880 40.000 0.00 0.00 0.00 4.75
14 15 5.883673 TGGTACTGGTTTATGTTAAGATGGC 59.116 40.000 0.00 0.00 0.00 4.40
15 16 7.556275 ACATGGTACTGGTTTATGTTAAGATGG 59.444 37.037 0.00 0.00 0.00 3.51
16 17 8.506168 ACATGGTACTGGTTTATGTTAAGATG 57.494 34.615 0.00 0.00 0.00 2.90
21 22 9.570468 TGTTTTACATGGTACTGGTTTATGTTA 57.430 29.630 0.00 0.00 34.22 2.41
22 23 8.466617 TGTTTTACATGGTACTGGTTTATGTT 57.533 30.769 0.00 0.00 34.22 2.71
23 24 8.644374 ATGTTTTACATGGTACTGGTTTATGT 57.356 30.769 0.00 0.00 37.45 2.29
29 30 9.914834 ACATATTATGTTTTACATGGTACTGGT 57.085 29.630 3.40 0.00 41.63 4.00
46 47 5.050091 GTCGAGCAGTTCCCAACATATTATG 60.050 44.000 2.03 2.03 0.00 1.90
47 48 5.057149 GTCGAGCAGTTCCCAACATATTAT 58.943 41.667 0.00 0.00 0.00 1.28
48 49 4.081365 TGTCGAGCAGTTCCCAACATATTA 60.081 41.667 0.00 0.00 0.00 0.98
49 50 3.270877 GTCGAGCAGTTCCCAACATATT 58.729 45.455 0.00 0.00 0.00 1.28
50 51 2.236146 TGTCGAGCAGTTCCCAACATAT 59.764 45.455 0.00 0.00 0.00 1.78
51 52 1.621317 TGTCGAGCAGTTCCCAACATA 59.379 47.619 0.00 0.00 0.00 2.29
52 53 0.396435 TGTCGAGCAGTTCCCAACAT 59.604 50.000 0.00 0.00 0.00 2.71
53 54 0.531974 GTGTCGAGCAGTTCCCAACA 60.532 55.000 0.00 0.00 0.00 3.33
54 55 1.228657 GGTGTCGAGCAGTTCCCAAC 61.229 60.000 0.00 0.00 0.00 3.77
55 56 1.070786 GGTGTCGAGCAGTTCCCAA 59.929 57.895 0.00 0.00 0.00 4.12
56 57 2.741092 GGTGTCGAGCAGTTCCCA 59.259 61.111 0.00 0.00 0.00 4.37
57 58 1.255667 TAGGGTGTCGAGCAGTTCCC 61.256 60.000 0.00 0.00 35.56 3.97
58 59 0.108756 GTAGGGTGTCGAGCAGTTCC 60.109 60.000 0.00 0.00 0.00 3.62
59 60 0.601558 TGTAGGGTGTCGAGCAGTTC 59.398 55.000 0.00 0.00 0.00 3.01
60 61 0.317479 GTGTAGGGTGTCGAGCAGTT 59.683 55.000 0.00 0.00 0.00 3.16
61 62 1.863662 CGTGTAGGGTGTCGAGCAGT 61.864 60.000 0.00 0.00 0.00 4.40
62 63 1.154016 CGTGTAGGGTGTCGAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
63 64 2.632544 CCGTGTAGGGTGTCGAGCA 61.633 63.158 0.00 0.00 35.97 4.26
64 65 2.181021 CCGTGTAGGGTGTCGAGC 59.819 66.667 0.00 0.00 35.97 5.03
65 66 0.959372 ACTCCGTGTAGGGTGTCGAG 60.959 60.000 0.00 0.00 41.52 4.04
66 67 1.073722 ACTCCGTGTAGGGTGTCGA 59.926 57.895 0.00 0.00 41.52 4.20
67 68 1.211969 CACTCCGTGTAGGGTGTCG 59.788 63.158 0.00 0.00 41.52 4.35
68 69 0.038526 CACACTCCGTGTAGGGTGTC 60.039 60.000 0.00 0.00 45.65 3.67
69 70 2.046938 CACACTCCGTGTAGGGTGT 58.953 57.895 0.00 0.00 45.65 4.16
70 71 1.292223 CCACACTCCGTGTAGGGTG 59.708 63.158 0.00 5.35 45.65 4.61
71 72 2.580601 GCCACACTCCGTGTAGGGT 61.581 63.158 13.51 0.00 45.65 4.34
72 73 2.227089 GAGCCACACTCCGTGTAGGG 62.227 65.000 13.51 7.89 45.65 3.53
73 74 1.215647 GAGCCACACTCCGTGTAGG 59.784 63.158 0.00 5.52 45.65 3.18
74 75 0.171455 GAGAGCCACACTCCGTGTAG 59.829 60.000 0.00 0.00 45.65 2.74
75 76 0.251209 AGAGAGCCACACTCCGTGTA 60.251 55.000 0.00 0.00 45.65 2.90
81 82 7.148086 CCTCTATATAATGAGAGAGCCACACTC 60.148 44.444 9.97 0.00 46.66 3.51
82 83 6.663093 CCTCTATATAATGAGAGAGCCACACT 59.337 42.308 9.97 0.00 41.55 3.55
83 84 6.435904 ACCTCTATATAATGAGAGAGCCACAC 59.564 42.308 9.97 0.00 41.55 3.82
84 85 6.556639 ACCTCTATATAATGAGAGAGCCACA 58.443 40.000 9.97 0.00 41.55 4.17
85 86 7.067737 GGTACCTCTATATAATGAGAGAGCCAC 59.932 44.444 4.06 0.00 41.55 5.01
86 87 7.120051 GGTACCTCTATATAATGAGAGAGCCA 58.880 42.308 4.06 0.00 41.55 4.75
87 88 7.576861 GGTACCTCTATATAATGAGAGAGCC 57.423 44.000 4.06 6.42 41.55 4.70
111 112 1.276989 ACATTGTACTGTACCCCGTGG 59.723 52.381 14.91 2.43 37.80 4.94
112 113 2.754946 ACATTGTACTGTACCCCGTG 57.245 50.000 14.91 10.35 0.00 4.94
113 114 3.577848 TGTAACATTGTACTGTACCCCGT 59.422 43.478 14.91 6.48 0.00 5.28
114 115 4.191033 TGTAACATTGTACTGTACCCCG 57.809 45.455 14.91 5.90 0.00 5.73
128 129 9.627123 AGCCTTTGTACACATATATTGTAACAT 57.373 29.630 0.00 0.00 36.57 2.71
140 141 9.929180 CTGTATATATGTAGCCTTTGTACACAT 57.071 33.333 0.00 0.00 33.26 3.21
141 142 8.920174 ACTGTATATATGTAGCCTTTGTACACA 58.080 33.333 0.00 0.00 33.26 3.72
142 143 9.408069 GACTGTATATATGTAGCCTTTGTACAC 57.592 37.037 0.00 0.00 33.26 2.90
143 144 9.363401 AGACTGTATATATGTAGCCTTTGTACA 57.637 33.333 0.00 0.00 34.92 2.90
149 150 9.026121 CCTGTTAGACTGTATATATGTAGCCTT 57.974 37.037 0.00 0.00 0.00 4.35
150 151 7.616150 CCCTGTTAGACTGTATATATGTAGCCT 59.384 40.741 0.00 0.00 0.00 4.58
151 152 7.614583 TCCCTGTTAGACTGTATATATGTAGCC 59.385 40.741 0.00 0.00 0.00 3.93
152 153 8.577048 TCCCTGTTAGACTGTATATATGTAGC 57.423 38.462 0.00 0.00 0.00 3.58
158 159 9.263446 ACTGTTTTCCCTGTTAGACTGTATATA 57.737 33.333 0.00 0.00 0.00 0.86
159 160 8.147244 ACTGTTTTCCCTGTTAGACTGTATAT 57.853 34.615 0.00 0.00 0.00 0.86
160 161 7.549147 ACTGTTTTCCCTGTTAGACTGTATA 57.451 36.000 0.00 0.00 0.00 1.47
161 162 6.435292 ACTGTTTTCCCTGTTAGACTGTAT 57.565 37.500 0.00 0.00 0.00 2.29
162 163 5.881923 ACTGTTTTCCCTGTTAGACTGTA 57.118 39.130 0.00 0.00 0.00 2.74
163 164 4.772886 ACTGTTTTCCCTGTTAGACTGT 57.227 40.909 0.00 0.00 0.00 3.55
164 165 5.357032 ACAAACTGTTTTCCCTGTTAGACTG 59.643 40.000 2.41 0.00 0.00 3.51
165 166 5.506708 ACAAACTGTTTTCCCTGTTAGACT 58.493 37.500 2.41 0.00 0.00 3.24
166 167 5.830000 ACAAACTGTTTTCCCTGTTAGAC 57.170 39.130 2.41 0.00 0.00 2.59
167 168 6.655930 ACTACAAACTGTTTTCCCTGTTAGA 58.344 36.000 2.41 0.00 0.00 2.10
168 169 6.766467 AGACTACAAACTGTTTTCCCTGTTAG 59.234 38.462 2.41 1.53 0.00 2.34
169 170 6.655930 AGACTACAAACTGTTTTCCCTGTTA 58.344 36.000 2.41 0.00 0.00 2.41
170 171 5.506708 AGACTACAAACTGTTTTCCCTGTT 58.493 37.500 2.41 0.00 0.00 3.16
171 172 5.112129 AGACTACAAACTGTTTTCCCTGT 57.888 39.130 2.41 1.63 0.00 4.00
172 173 6.540914 TGTTAGACTACAAACTGTTTTCCCTG 59.459 38.462 2.41 0.00 0.00 4.45
173 174 6.655930 TGTTAGACTACAAACTGTTTTCCCT 58.344 36.000 2.41 0.35 0.00 4.20
174 175 6.017357 CCTGTTAGACTACAAACTGTTTTCCC 60.017 42.308 2.41 0.00 0.00 3.97
175 176 6.017357 CCCTGTTAGACTACAAACTGTTTTCC 60.017 42.308 2.41 0.00 0.00 3.13
176 177 6.764560 TCCCTGTTAGACTACAAACTGTTTTC 59.235 38.462 2.41 0.00 0.00 2.29
177 178 6.655930 TCCCTGTTAGACTACAAACTGTTTT 58.344 36.000 2.41 0.00 0.00 2.43
178 179 6.243216 TCCCTGTTAGACTACAAACTGTTT 57.757 37.500 0.00 0.00 0.00 2.83
179 180 5.881923 TCCCTGTTAGACTACAAACTGTT 57.118 39.130 0.00 0.00 0.00 3.16
180 181 5.881923 TTCCCTGTTAGACTACAAACTGT 57.118 39.130 0.00 0.00 0.00 3.55
181 182 5.179555 GCTTTCCCTGTTAGACTACAAACTG 59.820 44.000 0.00 0.00 0.00 3.16
182 183 5.163237 TGCTTTCCCTGTTAGACTACAAACT 60.163 40.000 0.00 0.00 0.00 2.66
183 184 5.061179 TGCTTTCCCTGTTAGACTACAAAC 58.939 41.667 0.00 0.00 0.00 2.93
184 185 5.163237 ACTGCTTTCCCTGTTAGACTACAAA 60.163 40.000 0.00 0.00 0.00 2.83
185 186 4.347000 ACTGCTTTCCCTGTTAGACTACAA 59.653 41.667 0.00 0.00 0.00 2.41
186 187 3.901844 ACTGCTTTCCCTGTTAGACTACA 59.098 43.478 0.00 0.00 0.00 2.74
187 188 4.538746 ACTGCTTTCCCTGTTAGACTAC 57.461 45.455 0.00 0.00 0.00 2.73
188 189 5.163237 ACAAACTGCTTTCCCTGTTAGACTA 60.163 40.000 0.00 0.00 0.00 2.59
189 190 4.137543 CAAACTGCTTTCCCTGTTAGACT 58.862 43.478 0.00 0.00 0.00 3.24
190 191 3.883489 ACAAACTGCTTTCCCTGTTAGAC 59.117 43.478 0.00 0.00 0.00 2.59
191 192 4.164843 ACAAACTGCTTTCCCTGTTAGA 57.835 40.909 0.00 0.00 0.00 2.10
192 193 4.918810 AACAAACTGCTTTCCCTGTTAG 57.081 40.909 0.00 0.00 0.00 2.34
193 194 4.464597 ACAAACAAACTGCTTTCCCTGTTA 59.535 37.500 0.00 0.00 0.00 2.41
194 195 3.260632 ACAAACAAACTGCTTTCCCTGTT 59.739 39.130 0.00 0.00 0.00 3.16
195 196 2.831526 ACAAACAAACTGCTTTCCCTGT 59.168 40.909 0.00 0.00 0.00 4.00
196 197 3.189285 CACAAACAAACTGCTTTCCCTG 58.811 45.455 0.00 0.00 0.00 4.45
197 198 2.418609 GCACAAACAAACTGCTTTCCCT 60.419 45.455 0.00 0.00 0.00 4.20
205 206 5.879237 TCTCTACTTTGCACAAACAAACTG 58.121 37.500 0.00 0.00 34.68 3.16
241 242 0.249868 CACCGTCTCTTGGCTGTTGA 60.250 55.000 0.00 0.00 0.00 3.18
312 313 8.102800 TGTTATTTATTAGCTGGATGATGCAG 57.897 34.615 9.78 9.78 38.97 4.41
332 339 6.403866 TCACCAAAACAAAGCTGATGTTAT 57.596 33.333 16.07 6.56 39.98 1.89
333 340 5.735922 GCTCACCAAAACAAAGCTGATGTTA 60.736 40.000 16.07 2.23 39.98 2.41
335 342 3.491447 GCTCACCAAAACAAAGCTGATGT 60.491 43.478 0.00 0.00 0.00 3.06
336 343 3.054878 GCTCACCAAAACAAAGCTGATG 58.945 45.455 0.00 0.00 0.00 3.07
337 344 2.961062 AGCTCACCAAAACAAAGCTGAT 59.039 40.909 0.00 0.00 41.54 2.90
338 345 2.358898 GAGCTCACCAAAACAAAGCTGA 59.641 45.455 9.40 0.00 43.06 4.26
565 572 0.179070 CCCCAAACCAAACCAAACGG 60.179 55.000 0.00 0.00 0.00 4.44
566 573 0.812014 GCCCCAAACCAAACCAAACG 60.812 55.000 0.00 0.00 0.00 3.60
567 574 0.464735 GGCCCCAAACCAAACCAAAC 60.465 55.000 0.00 0.00 0.00 2.93
568 575 0.621862 AGGCCCCAAACCAAACCAAA 60.622 50.000 0.00 0.00 0.00 3.28
569 576 1.003573 AGGCCCCAAACCAAACCAA 59.996 52.632 0.00 0.00 0.00 3.67
570 577 1.458588 GAGGCCCCAAACCAAACCA 60.459 57.895 0.00 0.00 0.00 3.67
571 578 0.762842 AAGAGGCCCCAAACCAAACC 60.763 55.000 0.00 0.00 0.00 3.27
655 662 0.455410 CTCCAAGCCGAGAGAGACAG 59.545 60.000 0.00 0.00 31.43 3.51
656 663 1.599606 GCTCCAAGCCGAGAGAGACA 61.600 60.000 0.00 0.00 34.48 3.41
657 664 1.140804 GCTCCAAGCCGAGAGAGAC 59.859 63.158 0.00 0.00 34.48 3.36
658 665 0.613292 AAGCTCCAAGCCGAGAGAGA 60.613 55.000 0.00 0.00 43.77 3.10
665 672 1.528129 AGAAAGAAAGCTCCAAGCCG 58.472 50.000 0.00 0.00 43.77 5.52
817 848 2.546778 AGAACAAGAACAAGAACGCGA 58.453 42.857 15.93 0.00 0.00 5.87
818 849 3.029074 CAAGAACAAGAACAAGAACGCG 58.971 45.455 3.53 3.53 0.00 6.01
819 850 4.016113 ACAAGAACAAGAACAAGAACGC 57.984 40.909 0.00 0.00 0.00 4.84
822 853 7.687941 AAGAGAACAAGAACAAGAACAAGAA 57.312 32.000 0.00 0.00 0.00 2.52
823 854 7.010183 CGTAAGAGAACAAGAACAAGAACAAGA 59.990 37.037 0.00 0.00 43.02 3.02
824 855 7.119997 CGTAAGAGAACAAGAACAAGAACAAG 58.880 38.462 0.00 0.00 43.02 3.16
825 856 6.456449 GCGTAAGAGAACAAGAACAAGAACAA 60.456 38.462 0.00 0.00 43.02 2.83
982 1013 3.058363 CGGATAAACCCTACTCGCTACTC 60.058 52.174 0.00 0.00 34.64 2.59
983 1014 2.883386 CGGATAAACCCTACTCGCTACT 59.117 50.000 0.00 0.00 34.64 2.57
984 1015 2.606551 GCGGATAAACCCTACTCGCTAC 60.607 54.545 0.00 0.00 38.82 3.58
985 1016 1.610522 GCGGATAAACCCTACTCGCTA 59.389 52.381 0.00 0.00 38.82 4.26
986 1017 0.388294 GCGGATAAACCCTACTCGCT 59.612 55.000 0.00 0.00 38.82 4.93
987 1018 0.388294 AGCGGATAAACCCTACTCGC 59.612 55.000 0.00 0.00 41.64 5.03
988 1019 1.000496 GGAGCGGATAAACCCTACTCG 60.000 57.143 0.00 0.00 33.25 4.18
1038 1079 0.404040 ACAGGAAATTGGCGGAGGAA 59.596 50.000 0.00 0.00 0.00 3.36
1133 1174 1.221840 CTGGTGGTGGAATCCGAGG 59.778 63.158 0.00 0.00 0.00 4.63
1158 1199 1.825191 CCCAATCCATGTCCTGGCG 60.825 63.158 0.00 0.00 45.52 5.69
1470 1511 3.826524 GGAATCCCTCCAAGAAATCTCC 58.173 50.000 0.00 0.00 44.67 3.71
1506 1547 1.690283 CCTTGACGATGACGCTGCTG 61.690 60.000 0.00 0.00 43.96 4.41
1739 1780 4.201970 CCTCTTTCCTCGTCAGTACATCTC 60.202 50.000 0.00 0.00 0.00 2.75
1740 1781 3.697045 CCTCTTTCCTCGTCAGTACATCT 59.303 47.826 0.00 0.00 0.00 2.90
1750 1791 1.007238 TCCTGGATCCTCTTTCCTCGT 59.993 52.381 14.23 0.00 34.17 4.18
1797 1838 5.049818 GGCGTTCAGAGAGAATATGAAATGG 60.050 44.000 0.00 0.00 40.66 3.16
1815 1856 1.011131 GATGGAATTCGCGGCGTTC 60.011 57.895 22.90 18.40 0.00 3.95
2031 2072 0.581529 TCTTGAACTTGCGTTGCTCG 59.418 50.000 0.00 0.00 43.12 5.03
2296 2337 0.682532 TTGCTTGTGCCACCACTGAA 60.683 50.000 0.00 0.00 42.54 3.02
2308 2349 1.470805 GCTCCGTTTTGGTTTGCTTGT 60.471 47.619 0.00 0.00 39.52 3.16
2387 2428 9.017669 GCAGATTGAAACATAAATAAAGAGCAG 57.982 33.333 0.00 0.00 0.00 4.24
2400 2441 2.093306 TCCGTCGCAGATTGAAACAT 57.907 45.000 0.00 0.00 40.67 2.71
2456 2497 1.386525 GGTATGTGCAGCACCATGGG 61.387 60.000 23.06 6.26 32.73 4.00
2467 2508 1.084289 GTTGGAGAACGGGTATGTGC 58.916 55.000 0.00 0.00 0.00 4.57
2492 2533 2.676121 CAAATGCCCCAGCCGTGA 60.676 61.111 0.00 0.00 38.69 4.35
2562 2603 4.136796 CCAAGGACTCATCAAAGTTCACA 58.863 43.478 0.00 0.00 0.00 3.58
2664 2705 1.625315 TGACCCTGGTGAGAATCTGTG 59.375 52.381 0.00 0.00 34.92 3.66
2931 2972 2.963782 GACGTCCCTGTGGATTATACCT 59.036 50.000 3.51 0.00 44.28 3.08
2949 2990 5.418310 ACAAAATGTTGGTAGTCTTGACG 57.582 39.130 0.00 0.00 39.22 4.35
3204 3245 1.745653 GCCCAGTCAGCAAGGTTTATC 59.254 52.381 0.00 0.00 0.00 1.75
3245 3286 5.657302 AGGTCGATTATGGTCTCAAGTAACT 59.343 40.000 0.00 0.00 0.00 2.24
3305 3346 3.711086 TCTGCTATCTCGCTGAATGTTC 58.289 45.455 0.00 0.00 35.37 3.18
3306 3347 3.808466 TCTGCTATCTCGCTGAATGTT 57.192 42.857 0.00 0.00 35.37 2.71
3308 3349 5.475273 TTTTTCTGCTATCTCGCTGAATG 57.525 39.130 6.05 0.00 43.93 2.67
3336 3377 1.685224 GTTCACCCCCTCATCTGCA 59.315 57.895 0.00 0.00 0.00 4.41
3419 3460 2.548280 CCATCACCATTTGTGCTTTGCA 60.548 45.455 0.00 0.00 45.03 4.08
3482 3523 1.200716 CTTCTTTGATGCACGCCACAT 59.799 47.619 0.00 0.00 0.00 3.21
3552 3593 1.667724 GGCACCTCAATCTTGACATCG 59.332 52.381 0.00 0.00 32.90 3.84
3591 3632 7.153985 CCCTATTCATTTTGCTTGAAACTTCA 58.846 34.615 0.00 0.00 36.72 3.02
3697 3738 7.665559 TGCTCTACTGTACCAAAAGAATTTCAT 59.334 33.333 0.00 0.00 37.28 2.57
3767 3925 6.801377 GCGTGTTACAAGAATCAATCAAATCA 59.199 34.615 1.88 0.00 0.00 2.57
3768 3926 7.007725 CAGCGTGTTACAAGAATCAATCAAATC 59.992 37.037 1.88 0.00 0.00 2.17
3824 3983 7.349711 TCAATTTGTTTTCTCTTAGCACGTAC 58.650 34.615 0.00 0.00 0.00 3.67
3825 3984 7.485418 TCAATTTGTTTTCTCTTAGCACGTA 57.515 32.000 0.00 0.00 0.00 3.57
4025 4186 6.827586 ATTACCAAAAGCGATAAGTTTCCA 57.172 33.333 0.00 0.00 0.00 3.53
4055 4216 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
4056 4217 8.480501 ACGCTTTTATATTAGTTTACAGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
4057 4218 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
4074 4235 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
4075 4236 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
4078 4239 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
4079 4240 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
4106 4267 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
4107 4268 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
4108 4269 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
4109 4270 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
4110 4271 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4111 4272 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4120 4281 9.950496 CTTATACTATACTCCCTCCGTAAACTA 57.050 37.037 0.00 0.00 0.00 2.24
4121 4282 7.887495 CCTTATACTATACTCCCTCCGTAAACT 59.113 40.741 0.00 0.00 0.00 2.66
4122 4283 7.885399 TCCTTATACTATACTCCCTCCGTAAAC 59.115 40.741 0.00 0.00 0.00 2.01
4123 4284 7.988937 TCCTTATACTATACTCCCTCCGTAAA 58.011 38.462 0.00 0.00 0.00 2.01
4124 4285 7.459125 TCTCCTTATACTATACTCCCTCCGTAA 59.541 40.741 0.00 0.00 0.00 3.18
4125 4286 6.962311 TCTCCTTATACTATACTCCCTCCGTA 59.038 42.308 0.00 0.00 0.00 4.02
4126 4287 5.789575 TCTCCTTATACTATACTCCCTCCGT 59.210 44.000 0.00 0.00 0.00 4.69
4127 4288 6.310764 TCTCCTTATACTATACTCCCTCCG 57.689 45.833 0.00 0.00 0.00 4.63
4128 4289 7.129816 AGGATCTCCTTATACTATACTCCCTCC 59.870 44.444 0.00 0.00 46.09 4.30
4129 4290 8.109560 AGGATCTCCTTATACTATACTCCCTC 57.890 42.308 0.00 0.00 46.09 4.30
4146 4307 0.548031 TGGACCATGCAAGGATCTCC 59.452 55.000 16.33 11.91 0.00 3.71
4147 4308 2.653234 ATGGACCATGCAAGGATCTC 57.347 50.000 16.33 1.39 0.00 2.75
4148 4309 4.508047 GGATTATGGACCATGCAAGGATCT 60.508 45.833 16.33 0.00 0.00 2.75
4149 4310 3.760684 GGATTATGGACCATGCAAGGATC 59.239 47.826 16.33 8.37 0.00 3.36
4150 4311 3.400322 AGGATTATGGACCATGCAAGGAT 59.600 43.478 16.33 0.00 0.00 3.24
4151 4312 2.785269 AGGATTATGGACCATGCAAGGA 59.215 45.455 16.33 0.00 0.00 3.36
4152 4313 3.234234 AGGATTATGGACCATGCAAGG 57.766 47.619 17.73 6.39 0.00 3.61
4153 4314 3.243636 GCAAGGATTATGGACCATGCAAG 60.244 47.826 17.73 2.01 45.99 4.01
4154 4315 2.694628 GCAAGGATTATGGACCATGCAA 59.305 45.455 17.73 4.62 45.99 4.08
4155 4316 2.309613 GCAAGGATTATGGACCATGCA 58.690 47.619 17.73 3.91 45.99 3.96
4156 4317 2.309613 TGCAAGGATTATGGACCATGC 58.690 47.619 17.73 11.85 46.60 4.06
4157 4318 3.257375 CCATGCAAGGATTATGGACCATG 59.743 47.826 17.73 0.62 43.15 3.66
4158 4319 3.117016 ACCATGCAAGGATTATGGACCAT 60.117 43.478 16.33 12.67 43.15 3.55
4159 4320 2.244510 ACCATGCAAGGATTATGGACCA 59.755 45.455 16.33 0.00 43.15 4.02
4160 4321 2.949447 ACCATGCAAGGATTATGGACC 58.051 47.619 16.33 0.00 43.15 4.46
4161 4322 4.275936 GTGTACCATGCAAGGATTATGGAC 59.724 45.833 16.33 5.59 43.15 4.02
4162 4323 4.080072 TGTGTACCATGCAAGGATTATGGA 60.080 41.667 16.33 0.00 43.15 3.41
4163 4324 4.206375 TGTGTACCATGCAAGGATTATGG 58.794 43.478 16.33 6.86 45.37 2.74
4164 4325 5.833406 TTGTGTACCATGCAAGGATTATG 57.167 39.130 16.33 0.00 0.00 1.90
4165 4326 6.683610 GCAATTGTGTACCATGCAAGGATTAT 60.684 38.462 16.33 0.00 37.00 1.28
4166 4327 5.394005 GCAATTGTGTACCATGCAAGGATTA 60.394 40.000 16.33 0.00 37.00 1.75
4167 4328 4.621274 GCAATTGTGTACCATGCAAGGATT 60.621 41.667 16.33 0.00 37.00 3.01
4168 4329 3.119029 GCAATTGTGTACCATGCAAGGAT 60.119 43.478 16.33 1.53 37.00 3.24
4169 4330 2.230992 GCAATTGTGTACCATGCAAGGA 59.769 45.455 16.33 0.00 37.00 3.36
4170 4331 2.029200 TGCAATTGTGTACCATGCAAGG 60.029 45.455 6.39 6.39 43.39 3.61
4171 4332 3.300852 TGCAATTGTGTACCATGCAAG 57.699 42.857 7.40 0.00 43.39 4.01
4173 4334 1.959282 TGTGCAATTGTGTACCATGCA 59.041 42.857 7.40 7.92 44.07 3.96
4174 4335 2.721274 TGTGCAATTGTGTACCATGC 57.279 45.000 7.40 0.00 39.43 4.06
4175 4336 3.974912 TGTTGTGCAATTGTGTACCATG 58.025 40.909 7.40 0.00 39.43 3.66
4176 4337 4.870123 ATGTTGTGCAATTGTGTACCAT 57.130 36.364 7.40 2.22 39.43 3.55
4177 4338 5.973899 ATATGTTGTGCAATTGTGTACCA 57.026 34.783 7.40 0.00 39.43 3.25
4178 4339 7.083875 ACTATATGTTGTGCAATTGTGTACC 57.916 36.000 7.40 0.00 39.43 3.34
4179 4340 7.186804 GGACTATATGTTGTGCAATTGTGTAC 58.813 38.462 7.40 5.14 40.49 2.90
4180 4341 6.036626 CGGACTATATGTTGTGCAATTGTGTA 59.963 38.462 7.40 0.00 0.00 2.90
4181 4342 5.163764 CGGACTATATGTTGTGCAATTGTGT 60.164 40.000 7.40 0.00 0.00 3.72
4182 4343 5.064579 TCGGACTATATGTTGTGCAATTGTG 59.935 40.000 7.40 0.00 0.00 3.33
4183 4344 5.182487 TCGGACTATATGTTGTGCAATTGT 58.818 37.500 7.40 0.00 0.00 2.71
4184 4345 5.733226 TCGGACTATATGTTGTGCAATTG 57.267 39.130 0.00 0.00 0.00 2.32
4185 4346 6.942532 ATTCGGACTATATGTTGTGCAATT 57.057 33.333 0.00 0.00 0.00 2.32
4186 4347 8.097038 AGATATTCGGACTATATGTTGTGCAAT 58.903 33.333 0.00 0.00 0.00 3.56
4187 4348 7.441836 AGATATTCGGACTATATGTTGTGCAA 58.558 34.615 0.00 0.00 0.00 4.08
4188 4349 6.993079 AGATATTCGGACTATATGTTGTGCA 58.007 36.000 0.00 0.00 0.00 4.57
4189 4350 7.488471 GGTAGATATTCGGACTATATGTTGTGC 59.512 40.741 0.00 0.00 0.00 4.57
4190 4351 8.740906 AGGTAGATATTCGGACTATATGTTGTG 58.259 37.037 0.00 0.00 0.00 3.33
4191 4352 8.880991 AGGTAGATATTCGGACTATATGTTGT 57.119 34.615 0.00 0.00 0.00 3.32
4198 4359 9.567776 CATCATCTAGGTAGATATTCGGACTAT 57.432 37.037 0.00 0.00 40.91 2.12
4199 4360 8.549731 ACATCATCTAGGTAGATATTCGGACTA 58.450 37.037 0.00 0.00 40.91 2.59
4200 4361 7.406916 ACATCATCTAGGTAGATATTCGGACT 58.593 38.462 0.00 0.00 40.91 3.85
4255 4417 2.875317 GCTTCTTGAAGCCTGGTATAGC 59.125 50.000 20.95 0.00 39.81 2.97
4281 4443 6.590292 GCTCTGCTTGTTTACAATACTAGTGA 59.410 38.462 5.39 0.00 35.02 3.41
4335 4497 1.152756 GGTTGTTGCTCTGGGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
4450 4636 1.523758 GGGAGGTAAGCACACACAAG 58.476 55.000 0.00 0.00 0.00 3.16
4618 4804 3.153369 TCAAGAAAATGCCCAGCTACA 57.847 42.857 0.00 0.00 0.00 2.74
4654 4840 0.750850 ACATTATGGGACGGACGGAG 59.249 55.000 0.00 0.00 0.00 4.63
4655 4841 2.070305 TACATTATGGGACGGACGGA 57.930 50.000 0.00 0.00 0.00 4.69
4656 4842 2.363038 TCTTACATTATGGGACGGACGG 59.637 50.000 0.00 0.00 0.00 4.79
4657 4843 3.378339 GTCTTACATTATGGGACGGACG 58.622 50.000 0.00 0.00 0.00 4.79
4658 4844 3.378339 CGTCTTACATTATGGGACGGAC 58.622 50.000 20.50 10.60 43.69 4.79
4659 4845 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4662 4848 8.126700 CCATAAAAACGTCTTACATTATGGGAC 58.873 37.037 17.36 1.75 42.82 4.46
4663 4849 8.215926 CCATAAAAACGTCTTACATTATGGGA 57.784 34.615 17.36 0.00 42.82 4.37
4665 4851 8.126700 GTCCCATAAAAACGTCTTACATTATGG 58.873 37.037 17.79 17.79 44.66 2.74
4666 4852 7.849026 CGTCCCATAAAAACGTCTTACATTATG 59.151 37.037 0.00 0.00 32.96 1.90
4667 4853 7.011669 CCGTCCCATAAAAACGTCTTACATTAT 59.988 37.037 0.00 0.00 34.71 1.28
4668 4854 6.313411 CCGTCCCATAAAAACGTCTTACATTA 59.687 38.462 0.00 0.00 34.71 1.90
4669 4855 5.122711 CCGTCCCATAAAAACGTCTTACATT 59.877 40.000 0.00 0.00 34.71 2.71
4670 4856 4.632688 CCGTCCCATAAAAACGTCTTACAT 59.367 41.667 0.00 0.00 34.71 2.29
4671 4857 3.995705 CCGTCCCATAAAAACGTCTTACA 59.004 43.478 0.00 0.00 34.71 2.41
4672 4858 4.244862 TCCGTCCCATAAAAACGTCTTAC 58.755 43.478 0.00 0.00 34.71 2.34
4673 4859 4.497300 CTCCGTCCCATAAAAACGTCTTA 58.503 43.478 0.00 0.00 34.71 2.10
4674 4860 3.332034 CTCCGTCCCATAAAAACGTCTT 58.668 45.455 0.00 0.00 34.71 3.01
4675 4861 2.354403 CCTCCGTCCCATAAAAACGTCT 60.354 50.000 0.00 0.00 34.71 4.18
4676 4862 2.004733 CCTCCGTCCCATAAAAACGTC 58.995 52.381 0.00 0.00 34.71 4.34
4677 4863 1.339342 CCCTCCGTCCCATAAAAACGT 60.339 52.381 0.00 0.00 34.71 3.99
4678 4864 1.065998 TCCCTCCGTCCCATAAAAACG 60.066 52.381 0.00 0.00 36.22 3.60
4679 4865 2.026542 ACTCCCTCCGTCCCATAAAAAC 60.027 50.000 0.00 0.00 0.00 2.43
4680 4866 2.271777 ACTCCCTCCGTCCCATAAAAA 58.728 47.619 0.00 0.00 0.00 1.94
4681 4867 1.961133 ACTCCCTCCGTCCCATAAAA 58.039 50.000 0.00 0.00 0.00 1.52
4682 4868 2.852714 TACTCCCTCCGTCCCATAAA 57.147 50.000 0.00 0.00 0.00 1.40
4683 4869 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
4684 4870 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4685 4871 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
4686 4872 1.835531 GAAATTACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
4687 4873 2.117051 AGAAATTACTCCCTCCGTCCC 58.883 52.381 0.00 0.00 0.00 4.46
4688 4874 5.114780 GTTTAGAAATTACTCCCTCCGTCC 58.885 45.833 0.00 0.00 0.00 4.79
4689 4875 5.727434 TGTTTAGAAATTACTCCCTCCGTC 58.273 41.667 0.00 0.00 0.00 4.79
4690 4876 5.247792 ACTGTTTAGAAATTACTCCCTCCGT 59.752 40.000 0.00 0.00 0.00 4.69
4691 4877 5.731591 ACTGTTTAGAAATTACTCCCTCCG 58.268 41.667 0.00 0.00 0.00 4.63
4692 4878 9.163899 CTTTACTGTTTAGAAATTACTCCCTCC 57.836 37.037 0.00 0.00 0.00 4.30
4693 4879 8.666573 GCTTTACTGTTTAGAAATTACTCCCTC 58.333 37.037 0.00 0.00 0.00 4.30
4694 4880 7.610692 GGCTTTACTGTTTAGAAATTACTCCCT 59.389 37.037 0.00 0.00 0.00 4.20
4695 4881 7.610692 AGGCTTTACTGTTTAGAAATTACTCCC 59.389 37.037 0.00 0.00 0.00 4.30
4696 4882 8.451748 CAGGCTTTACTGTTTAGAAATTACTCC 58.548 37.037 0.00 0.00 33.81 3.85
4697 4883 7.963465 GCAGGCTTTACTGTTTAGAAATTACTC 59.037 37.037 0.00 0.00 40.59 2.59
4698 4884 7.665974 AGCAGGCTTTACTGTTTAGAAATTACT 59.334 33.333 0.00 0.00 40.59 2.24
4699 4885 7.817641 AGCAGGCTTTACTGTTTAGAAATTAC 58.182 34.615 0.00 0.00 40.59 1.89
4700 4886 7.996098 AGCAGGCTTTACTGTTTAGAAATTA 57.004 32.000 0.00 0.00 40.59 1.40
4701 4887 6.901081 AGCAGGCTTTACTGTTTAGAAATT 57.099 33.333 0.00 0.00 40.59 1.82
4702 4888 6.901081 AAGCAGGCTTTACTGTTTAGAAAT 57.099 33.333 0.00 0.00 39.63 2.17
4703 4889 6.709018 AAAGCAGGCTTTACTGTTTAGAAA 57.291 33.333 17.03 0.00 43.58 2.52
4704 4890 6.709018 AAAAGCAGGCTTTACTGTTTAGAA 57.291 33.333 18.62 0.00 44.50 2.10
4705 4891 7.996098 ATAAAAGCAGGCTTTACTGTTTAGA 57.004 32.000 18.62 0.00 44.50 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.