Multiple sequence alignment - TraesCS2A01G252300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G252300 chr2A 100.000 2939 0 0 1 2939 383607102 383610040 0.000000e+00 5428.0
1 TraesCS2A01G252300 chr2A 84.158 101 14 2 2741 2840 43533325 43533226 2.410000e-16 97.1
2 TraesCS2A01G252300 chr2A 84.158 101 14 2 2741 2840 43536931 43536832 2.410000e-16 97.1
3 TraesCS2A01G252300 chr2A 98.148 54 1 0 2664 2717 383609713 383609766 8.670000e-16 95.3
4 TraesCS2A01G252300 chr2A 98.148 54 1 0 2612 2665 383609765 383609818 8.670000e-16 95.3
5 TraesCS2A01G252300 chr2A 90.323 62 4 2 2194 2255 699526741 699526800 2.430000e-11 80.5
6 TraesCS2A01G252300 chr2D 94.462 1571 34 20 278 1811 304991632 304993186 0.000000e+00 2370.0
7 TraesCS2A01G252300 chr2D 94.615 390 11 3 1794 2182 304993207 304993587 1.950000e-166 595.0
8 TraesCS2A01G252300 chr2D 91.093 247 12 7 11 257 304990537 304990773 2.820000e-85 326.0
9 TraesCS2A01G252300 chr2D 97.826 92 2 0 2848 2939 304993601 304993692 3.030000e-35 159.0
10 TraesCS2A01G252300 chr2D 83.168 101 15 2 2741 2840 40939023 40938924 1.120000e-14 91.6
11 TraesCS2A01G252300 chr2B 94.229 1265 41 10 948 2195 373492002 373493251 0.000000e+00 1903.0
12 TraesCS2A01G252300 chr2B 96.429 616 14 3 359 969 373491354 373491966 0.000000e+00 1009.0
13 TraesCS2A01G252300 chr2B 96.377 276 8 2 2664 2939 373493509 373493782 1.240000e-123 453.0
14 TraesCS2A01G252300 chr2B 96.255 267 7 3 1 267 373491080 373491343 4.500000e-118 435.0
15 TraesCS2A01G252300 chr2B 90.756 119 10 1 2323 2440 373493336 373493454 1.090000e-34 158.0
16 TraesCS2A01G252300 chr2B 92.661 109 8 0 2556 2664 373493453 373493561 1.090000e-34 158.0
17 TraesCS2A01G252300 chr2B 84.946 93 14 0 2752 2844 67698750 67698658 8.670000e-16 95.3
18 TraesCS2A01G252300 chr2B 89.831 59 4 2 2194 2252 73555085 73555141 1.130000e-09 75.0
19 TraesCS2A01G252300 chr3D 89.600 125 7 2 2440 2558 603689225 603689101 1.410000e-33 154.0
20 TraesCS2A01G252300 chr3D 88.889 126 8 2 2440 2559 5679232 5679357 1.820000e-32 150.0
21 TraesCS2A01G252300 chr1B 88.889 126 8 2 2440 2559 345308099 345307974 1.820000e-32 150.0
22 TraesCS2A01G252300 chr1B 91.525 59 3 2 2194 2252 8247869 8247925 2.430000e-11 80.5
23 TraesCS2A01G252300 chr7D 89.076 119 9 2 2440 2558 50715916 50715802 8.490000e-31 145.0
24 TraesCS2A01G252300 chr5A 87.500 128 10 2 2435 2556 6488249 6488376 3.050000e-30 143.0
25 TraesCS2A01G252300 chrUn 88.430 121 8 2 2441 2555 77927433 77927553 1.100000e-29 141.0
26 TraesCS2A01G252300 chrUn 87.302 63 6 2 2193 2255 29814052 29813992 1.460000e-08 71.3
27 TraesCS2A01G252300 chr7B 87.200 125 10 2 2440 2558 680272712 680272588 1.420000e-28 137.0
28 TraesCS2A01G252300 chr7A 93.478 92 5 1 2467 2558 606577445 606577355 5.110000e-28 135.0
29 TraesCS2A01G252300 chr1A 86.667 120 15 1 2440 2558 540718137 540718256 6.610000e-27 132.0
30 TraesCS2A01G252300 chr5D 93.103 58 4 0 2194 2251 424210800 424210743 5.220000e-13 86.1
31 TraesCS2A01G252300 chr5D 88.710 62 5 1 2194 2255 54933835 54933776 1.130000e-09 75.0
32 TraesCS2A01G252300 chr1D 91.935 62 3 1 2194 2255 160902315 160902374 5.220000e-13 86.1
33 TraesCS2A01G252300 chr1D 88.710 62 5 1 2194 2255 308419739 308419680 1.130000e-09 75.0
34 TraesCS2A01G252300 chr3B 87.097 62 6 1 2194 2255 602434517 602434458 5.260000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G252300 chr2A 383607102 383610040 2938 False 1872.866667 5428 98.765333 1 2939 3 chr2A.!!$F2 2938
1 TraesCS2A01G252300 chr2D 304990537 304993692 3155 False 862.500000 2370 94.499000 11 2939 4 chr2D.!!$F1 2928
2 TraesCS2A01G252300 chr2B 373491080 373493782 2702 False 686.000000 1903 94.451167 1 2939 6 chr2B.!!$F2 2938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.32511 TGAGGAGCCTTCTCTCAGGG 60.325 60.0 0.83 0.0 39.31 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 3121 0.111253 AGGAGAAAAGGTGGCAGTGG 59.889 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 2.094286 CACTTTTGTGCCAGTGGTTTCA 60.094 45.455 11.74 5.06 44.07 2.69
181 182 5.721960 AGCTACTCACTAGAAGGGAATCAAA 59.278 40.000 0.00 0.00 0.00 2.69
195 196 2.734755 ATCAAAGATCGGCCCATTCA 57.265 45.000 0.00 0.00 0.00 2.57
197 198 1.559219 TCAAAGATCGGCCCATTCAGA 59.441 47.619 0.00 0.00 0.00 3.27
225 226 0.325110 TGAGGAGCCTTCTCTCAGGG 60.325 60.000 0.83 0.00 39.31 4.45
253 254 2.191400 TCACTCCTAGCTGCTCCATTT 58.809 47.619 4.91 0.00 0.00 2.32
254 255 2.169352 TCACTCCTAGCTGCTCCATTTC 59.831 50.000 4.91 0.00 0.00 2.17
267 1090 6.348868 GCTGCTCCATTTCTATTTAGTATGCC 60.349 42.308 0.00 0.00 0.00 4.40
268 1091 6.841601 TGCTCCATTTCTATTTAGTATGCCT 58.158 36.000 0.00 0.00 0.00 4.75
269 1092 6.712095 TGCTCCATTTCTATTTAGTATGCCTG 59.288 38.462 0.00 0.00 0.00 4.85
273 1096 7.502226 TCCATTTCTATTTAGTATGCCTGGTTG 59.498 37.037 0.00 0.00 0.00 3.77
274 1097 7.285401 CCATTTCTATTTAGTATGCCTGGTTGT 59.715 37.037 0.00 0.00 0.00 3.32
275 1098 8.686334 CATTTCTATTTAGTATGCCTGGTTGTT 58.314 33.333 0.00 0.00 0.00 2.83
320 1158 5.906113 TTTTCAAGCCTTGTTACTTGTCA 57.094 34.783 4.04 0.00 43.05 3.58
349 1189 4.170292 GCTTCAGCATGTCATTTGTTCT 57.830 40.909 0.00 0.00 41.59 3.01
568 1408 1.563410 CTTGGCCCCTTGAGAGATCTT 59.437 52.381 0.00 0.00 0.00 2.40
569 1409 1.673767 TGGCCCCTTGAGAGATCTTT 58.326 50.000 0.00 0.00 0.00 2.52
743 1583 4.039151 TGCATTGGTTTACACAACACAG 57.961 40.909 0.00 0.00 0.00 3.66
772 1612 2.104792 TCTCTGCCATGGCCATAAGTAC 59.895 50.000 33.44 6.79 41.09 2.73
832 1677 4.153117 GGTTCATGAGTTGCTTAGTGACTG 59.847 45.833 0.00 0.00 0.00 3.51
959 1804 1.597461 GGGAAAGAGACGGGTCAGG 59.403 63.158 1.17 0.00 0.00 3.86
960 1805 1.079057 GGAAAGAGACGGGTCAGGC 60.079 63.158 1.17 0.00 0.00 4.85
965 1822 2.681778 AGACGGGTCAGGCAGAGG 60.682 66.667 1.17 0.00 0.00 3.69
1101 2002 3.297134 TGTCTCTTGTTTCCTTTGCCT 57.703 42.857 0.00 0.00 0.00 4.75
1155 2069 3.332761 TTTGAACGCTGTTGTGTCATC 57.667 42.857 0.00 0.00 35.64 2.92
1156 2070 2.238942 TGAACGCTGTTGTGTCATCT 57.761 45.000 0.00 0.00 35.64 2.90
1157 2071 1.866601 TGAACGCTGTTGTGTCATCTG 59.133 47.619 0.00 0.00 35.64 2.90
1158 2072 2.135139 GAACGCTGTTGTGTCATCTGA 58.865 47.619 0.00 0.00 35.64 3.27
1159 2073 2.238942 ACGCTGTTGTGTCATCTGAA 57.761 45.000 0.00 0.00 29.93 3.02
1160 2074 2.771089 ACGCTGTTGTGTCATCTGAAT 58.229 42.857 0.00 0.00 29.93 2.57
1161 2075 2.738846 ACGCTGTTGTGTCATCTGAATC 59.261 45.455 0.00 0.00 29.93 2.52
1162 2076 2.738314 CGCTGTTGTGTCATCTGAATCA 59.262 45.455 0.00 0.00 0.00 2.57
1163 2077 3.373130 CGCTGTTGTGTCATCTGAATCAT 59.627 43.478 0.00 0.00 0.00 2.45
1164 2078 4.659088 GCTGTTGTGTCATCTGAATCATG 58.341 43.478 0.00 0.00 0.00 3.07
1165 2079 4.659088 CTGTTGTGTCATCTGAATCATGC 58.341 43.478 0.00 0.00 0.00 4.06
1166 2080 4.073549 TGTTGTGTCATCTGAATCATGCA 58.926 39.130 0.00 0.00 0.00 3.96
1167 2081 4.703093 TGTTGTGTCATCTGAATCATGCAT 59.297 37.500 0.00 0.00 0.00 3.96
1533 2447 6.493802 GGACCCAAGTAAATTTCTCCTTTTCT 59.506 38.462 0.00 0.00 0.00 2.52
1578 2513 6.212955 GGATGTAGAGTACTTGCTCTTGATC 58.787 44.000 1.94 4.91 42.69 2.92
1583 2518 4.769488 AGAGTACTTGCTCTTGATCAGTCA 59.231 41.667 0.00 0.00 42.69 3.41
1635 2570 3.615155 TGAATTGTTCAGTGGTGTGACA 58.385 40.909 0.00 0.00 34.08 3.58
1643 2578 1.032014 AGTGGTGTGACATGTTTGCC 58.968 50.000 0.00 1.25 0.00 4.52
1670 2606 2.838202 TCTTCTTGATAGGTTTCGGGCT 59.162 45.455 0.00 0.00 0.00 5.19
1799 2735 9.749490 CACGTAATTTACTGTTCAATTATCGTT 57.251 29.630 17.58 9.64 34.31 3.85
1908 2883 0.445436 CTGCGTTTCTGACCATGCTC 59.555 55.000 0.00 0.00 0.00 4.26
1924 2899 1.417517 TGCTCCAGCTCAGAGTTTTCA 59.582 47.619 11.09 0.00 42.66 2.69
1933 2908 3.625938 CTCAGAGTTTTCAAAGCTGTGC 58.374 45.455 6.28 0.00 0.00 4.57
1934 2909 2.032054 TCAGAGTTTTCAAAGCTGTGCG 59.968 45.455 6.28 0.00 0.00 5.34
1970 2945 1.609783 GTGGCTGGGATGGCTTACT 59.390 57.895 0.00 0.00 0.00 2.24
1971 2946 0.749454 GTGGCTGGGATGGCTTACTG 60.749 60.000 0.00 0.00 0.00 2.74
2145 3120 3.136443 TGAATATAGGAAGTGCCCACTGG 59.864 47.826 1.07 0.00 41.58 4.00
2193 3168 6.037610 GCGTTCCATCTCAGATTTACAGAAAT 59.962 38.462 0.00 0.00 38.00 2.17
2195 3170 8.543774 CGTTCCATCTCAGATTTACAGAAATAC 58.456 37.037 0.00 0.00 35.33 1.89
2196 3171 9.606631 GTTCCATCTCAGATTTACAGAAATACT 57.393 33.333 0.00 0.00 35.33 2.12
2198 3173 9.823647 TCCATCTCAGATTTACAGAAATACTTC 57.176 33.333 0.00 0.00 35.33 3.01
2199 3174 9.050601 CCATCTCAGATTTACAGAAATACTTCC 57.949 37.037 0.00 0.00 35.33 3.46
2200 3175 9.829507 CATCTCAGATTTACAGAAATACTTCCT 57.170 33.333 0.00 0.00 35.33 3.36
2202 3177 8.478877 TCTCAGATTTACAGAAATACTTCCTCC 58.521 37.037 0.00 0.00 35.33 4.30
2203 3178 7.265673 TCAGATTTACAGAAATACTTCCTCCG 58.734 38.462 0.00 0.00 35.33 4.63
2204 3179 6.018669 CAGATTTACAGAAATACTTCCTCCGC 60.019 42.308 0.00 0.00 35.33 5.54
2205 3180 4.811969 TTACAGAAATACTTCCTCCGCA 57.188 40.909 0.00 0.00 31.28 5.69
2206 3181 3.695830 ACAGAAATACTTCCTCCGCAA 57.304 42.857 0.00 0.00 31.28 4.85
2207 3182 4.015872 ACAGAAATACTTCCTCCGCAAA 57.984 40.909 0.00 0.00 31.28 3.68
2208 3183 4.003648 ACAGAAATACTTCCTCCGCAAAG 58.996 43.478 0.00 0.00 31.28 2.77
2209 3184 4.253685 CAGAAATACTTCCTCCGCAAAGA 58.746 43.478 0.00 0.00 31.28 2.52
2210 3185 4.695455 CAGAAATACTTCCTCCGCAAAGAA 59.305 41.667 0.00 0.00 31.28 2.52
2211 3186 5.181245 CAGAAATACTTCCTCCGCAAAGAAA 59.819 40.000 0.00 0.00 31.28 2.52
2212 3187 5.946377 AGAAATACTTCCTCCGCAAAGAAAT 59.054 36.000 0.00 0.00 31.28 2.17
2213 3188 7.065803 CAGAAATACTTCCTCCGCAAAGAAATA 59.934 37.037 0.00 0.00 31.28 1.40
2214 3189 7.775561 AGAAATACTTCCTCCGCAAAGAAATAT 59.224 33.333 0.00 0.00 31.28 1.28
2215 3190 8.974060 AAATACTTCCTCCGCAAAGAAATATA 57.026 30.769 0.00 0.00 0.00 0.86
2216 3191 8.974060 AATACTTCCTCCGCAAAGAAATATAA 57.026 30.769 0.00 0.00 0.00 0.98
2217 3192 6.927294 ACTTCCTCCGCAAAGAAATATAAG 57.073 37.500 0.00 0.00 0.00 1.73
2218 3193 6.650120 ACTTCCTCCGCAAAGAAATATAAGA 58.350 36.000 0.00 0.00 0.00 2.10
2219 3194 6.763610 ACTTCCTCCGCAAAGAAATATAAGAG 59.236 38.462 0.00 0.00 0.00 2.85
2220 3195 6.235231 TCCTCCGCAAAGAAATATAAGAGT 57.765 37.500 0.00 0.00 0.00 3.24
2221 3196 6.049149 TCCTCCGCAAAGAAATATAAGAGTG 58.951 40.000 0.00 0.00 0.00 3.51
2222 3197 5.817816 CCTCCGCAAAGAAATATAAGAGTGT 59.182 40.000 0.00 0.00 0.00 3.55
2223 3198 6.316390 CCTCCGCAAAGAAATATAAGAGTGTT 59.684 38.462 0.00 0.00 0.00 3.32
2224 3199 7.148239 CCTCCGCAAAGAAATATAAGAGTGTTT 60.148 37.037 0.00 0.00 0.00 2.83
2225 3200 8.780846 TCCGCAAAGAAATATAAGAGTGTTTA 57.219 30.769 0.00 0.00 0.00 2.01
2226 3201 8.879759 TCCGCAAAGAAATATAAGAGTGTTTAG 58.120 33.333 0.00 0.00 0.00 1.85
2227 3202 8.879759 CCGCAAAGAAATATAAGAGTGTTTAGA 58.120 33.333 0.00 0.00 0.00 2.10
2254 3229 9.811995 TCATTATAAAGTAGTGATGTAAACGCT 57.188 29.630 0.00 0.00 32.78 5.07
2255 3230 9.849607 CATTATAAAGTAGTGATGTAAACGCTG 57.150 33.333 0.00 0.00 29.98 5.18
2256 3231 9.811995 ATTATAAAGTAGTGATGTAAACGCTGA 57.188 29.630 0.00 0.00 29.98 4.26
2257 3232 7.757097 ATAAAGTAGTGATGTAAACGCTGAG 57.243 36.000 0.00 0.00 29.98 3.35
2258 3233 4.111375 AGTAGTGATGTAAACGCTGAGG 57.889 45.455 0.00 0.00 29.98 3.86
2259 3234 2.386661 AGTGATGTAAACGCTGAGGG 57.613 50.000 0.00 0.00 0.00 4.30
2260 3235 1.899814 AGTGATGTAAACGCTGAGGGA 59.100 47.619 2.65 0.00 0.00 4.20
2261 3236 2.093973 AGTGATGTAAACGCTGAGGGAG 60.094 50.000 2.65 0.00 0.00 4.30
2266 3241 4.546829 TGTAAACGCTGAGGGAGTATTT 57.453 40.909 2.65 0.00 0.00 1.40
2295 3270 7.425224 AGTTAGATGCTTACTACAAGGTGAT 57.575 36.000 0.00 0.00 0.00 3.06
2297 3272 4.446371 AGATGCTTACTACAAGGTGATGC 58.554 43.478 0.00 0.00 0.00 3.91
2298 3273 3.981071 TGCTTACTACAAGGTGATGCT 57.019 42.857 0.00 0.00 0.00 3.79
2307 3282 1.589716 AAGGTGATGCTCGCTTTGCC 61.590 55.000 0.00 0.00 0.00 4.52
2314 3289 1.282875 GCTCGCTTTGCCGTTTCTT 59.717 52.632 0.00 0.00 0.00 2.52
2315 3290 0.515564 GCTCGCTTTGCCGTTTCTTA 59.484 50.000 0.00 0.00 0.00 2.10
2354 3357 7.807907 AGTTGAGCATTTTTACATAGAAAACCG 59.192 33.333 0.00 0.00 0.00 4.44
2356 3359 8.050778 TGAGCATTTTTACATAGAAAACCGAT 57.949 30.769 0.00 0.00 0.00 4.18
2360 3363 9.301153 GCATTTTTACATAGAAAACCGATGAAT 57.699 29.630 0.00 0.00 32.96 2.57
2382 3385 1.675552 AACCAAACTGAGTTGACCGG 58.324 50.000 0.00 0.00 0.00 5.28
2390 3393 3.705051 ACTGAGTTGACCGGTATTCCTA 58.295 45.455 7.34 0.00 0.00 2.94
2392 3395 4.099573 ACTGAGTTGACCGGTATTCCTATG 59.900 45.833 7.34 0.00 0.00 2.23
2412 3416 9.173021 TCCTATGTATTCAGTTTATGGTGTTTG 57.827 33.333 0.00 0.00 0.00 2.93
2426 3430 1.473278 GTGTTTGGTTCGGTGTTTCCA 59.527 47.619 0.00 0.00 35.57 3.53
2435 3439 4.251268 GTTCGGTGTTTCCATAGCTAGTT 58.749 43.478 0.00 0.00 35.57 2.24
2438 3442 4.000988 CGGTGTTTCCATAGCTAGTTGTT 58.999 43.478 0.00 0.00 35.57 2.83
2439 3443 4.454504 CGGTGTTTCCATAGCTAGTTGTTT 59.545 41.667 0.00 0.00 35.57 2.83
2440 3444 5.048991 CGGTGTTTCCATAGCTAGTTGTTTT 60.049 40.000 0.00 0.00 35.57 2.43
2441 3445 6.148150 CGGTGTTTCCATAGCTAGTTGTTTTA 59.852 38.462 0.00 0.00 35.57 1.52
2442 3446 7.527457 GGTGTTTCCATAGCTAGTTGTTTTAG 58.473 38.462 0.00 0.00 35.97 1.85
2443 3447 7.389607 GGTGTTTCCATAGCTAGTTGTTTTAGA 59.610 37.037 0.00 0.00 35.97 2.10
2444 3448 8.228464 GTGTTTCCATAGCTAGTTGTTTTAGAC 58.772 37.037 0.00 0.00 0.00 2.59
2445 3449 8.154856 TGTTTCCATAGCTAGTTGTTTTAGACT 58.845 33.333 0.00 0.00 0.00 3.24
2446 3450 9.000486 GTTTCCATAGCTAGTTGTTTTAGACTT 58.000 33.333 0.00 0.00 0.00 3.01
2447 3451 9.569122 TTTCCATAGCTAGTTGTTTTAGACTTT 57.431 29.630 0.00 0.00 0.00 2.66
2448 3452 8.547967 TCCATAGCTAGTTGTTTTAGACTTTG 57.452 34.615 0.00 0.00 0.00 2.77
2449 3453 8.154856 TCCATAGCTAGTTGTTTTAGACTTTGT 58.845 33.333 0.00 0.00 0.00 2.83
2450 3454 8.784043 CCATAGCTAGTTGTTTTAGACTTTGTT 58.216 33.333 0.00 0.00 0.00 2.83
2451 3455 9.813080 CATAGCTAGTTGTTTTAGACTTTGTTC 57.187 33.333 0.00 0.00 0.00 3.18
2452 3456 6.945072 AGCTAGTTGTTTTAGACTTTGTTCG 58.055 36.000 0.00 0.00 0.00 3.95
2453 3457 6.018180 AGCTAGTTGTTTTAGACTTTGTTCGG 60.018 38.462 0.00 0.00 0.00 4.30
2454 3458 6.238293 GCTAGTTGTTTTAGACTTTGTTCGGT 60.238 38.462 0.00 0.00 0.00 4.69
2455 3459 6.505044 AGTTGTTTTAGACTTTGTTCGGTT 57.495 33.333 0.00 0.00 0.00 4.44
2456 3460 7.614124 AGTTGTTTTAGACTTTGTTCGGTTA 57.386 32.000 0.00 0.00 0.00 2.85
2457 3461 7.466805 AGTTGTTTTAGACTTTGTTCGGTTAC 58.533 34.615 0.00 0.00 0.00 2.50
2458 3462 6.981762 TGTTTTAGACTTTGTTCGGTTACA 57.018 33.333 0.00 0.00 0.00 2.41
2459 3463 6.774084 TGTTTTAGACTTTGTTCGGTTACAC 58.226 36.000 0.00 0.00 0.00 2.90
2460 3464 5.989551 TTTAGACTTTGTTCGGTTACACC 57.010 39.130 0.00 0.00 34.05 4.16
2461 3465 3.832615 AGACTTTGTTCGGTTACACCT 57.167 42.857 0.00 0.00 35.66 4.00
2462 3466 4.942761 AGACTTTGTTCGGTTACACCTA 57.057 40.909 0.00 0.00 35.66 3.08
2463 3467 4.625028 AGACTTTGTTCGGTTACACCTAC 58.375 43.478 0.00 0.00 35.66 3.18
2464 3468 4.343239 AGACTTTGTTCGGTTACACCTACT 59.657 41.667 0.00 0.00 35.66 2.57
2465 3469 4.625028 ACTTTGTTCGGTTACACCTACTC 58.375 43.478 0.00 0.00 35.66 2.59
2466 3470 4.099881 ACTTTGTTCGGTTACACCTACTCA 59.900 41.667 0.00 0.00 35.66 3.41
2467 3471 4.877378 TTGTTCGGTTACACCTACTCAT 57.123 40.909 0.00 0.00 35.66 2.90
2468 3472 4.877378 TGTTCGGTTACACCTACTCATT 57.123 40.909 0.00 0.00 35.66 2.57
2469 3473 4.562082 TGTTCGGTTACACCTACTCATTG 58.438 43.478 0.00 0.00 35.66 2.82
2470 3474 4.039488 TGTTCGGTTACACCTACTCATTGT 59.961 41.667 0.00 0.00 35.66 2.71
2471 3475 4.182693 TCGGTTACACCTACTCATTGTG 57.817 45.455 0.00 0.00 35.66 3.33
2472 3476 3.056393 TCGGTTACACCTACTCATTGTGG 60.056 47.826 0.00 0.00 35.66 4.17
2477 3481 3.882131 CCTACTCATTGTGGGGTGG 57.118 57.895 0.00 0.00 42.80 4.61
2478 3482 1.285280 CCTACTCATTGTGGGGTGGA 58.715 55.000 0.00 0.00 42.80 4.02
2479 3483 1.846439 CCTACTCATTGTGGGGTGGAT 59.154 52.381 0.00 0.00 42.80 3.41
2480 3484 2.242196 CCTACTCATTGTGGGGTGGATT 59.758 50.000 0.00 0.00 42.80 3.01
2481 3485 2.220653 ACTCATTGTGGGGTGGATTG 57.779 50.000 0.00 0.00 0.00 2.67
2482 3486 1.272648 ACTCATTGTGGGGTGGATTGG 60.273 52.381 0.00 0.00 0.00 3.16
2483 3487 1.005805 CTCATTGTGGGGTGGATTGGA 59.994 52.381 0.00 0.00 0.00 3.53
2484 3488 1.005805 TCATTGTGGGGTGGATTGGAG 59.994 52.381 0.00 0.00 0.00 3.86
2485 3489 0.336048 ATTGTGGGGTGGATTGGAGG 59.664 55.000 0.00 0.00 0.00 4.30
2486 3490 0.774096 TTGTGGGGTGGATTGGAGGA 60.774 55.000 0.00 0.00 0.00 3.71
2487 3491 1.207488 TGTGGGGTGGATTGGAGGAG 61.207 60.000 0.00 0.00 0.00 3.69
2488 3492 1.619363 TGGGGTGGATTGGAGGAGG 60.619 63.158 0.00 0.00 0.00 4.30
2489 3493 1.619669 GGGGTGGATTGGAGGAGGT 60.620 63.158 0.00 0.00 0.00 3.85
2490 3494 1.214992 GGGGTGGATTGGAGGAGGTT 61.215 60.000 0.00 0.00 0.00 3.50
2491 3495 0.704664 GGGTGGATTGGAGGAGGTTT 59.295 55.000 0.00 0.00 0.00 3.27
2492 3496 1.077169 GGGTGGATTGGAGGAGGTTTT 59.923 52.381 0.00 0.00 0.00 2.43
2493 3497 2.171003 GGTGGATTGGAGGAGGTTTTG 58.829 52.381 0.00 0.00 0.00 2.44
2494 3498 2.225017 GGTGGATTGGAGGAGGTTTTGA 60.225 50.000 0.00 0.00 0.00 2.69
2495 3499 2.820197 GTGGATTGGAGGAGGTTTTGAC 59.180 50.000 0.00 0.00 0.00 3.18
2496 3500 2.716424 TGGATTGGAGGAGGTTTTGACT 59.284 45.455 0.00 0.00 0.00 3.41
2497 3501 3.140144 TGGATTGGAGGAGGTTTTGACTT 59.860 43.478 0.00 0.00 0.00 3.01
2498 3502 3.507622 GGATTGGAGGAGGTTTTGACTTG 59.492 47.826 0.00 0.00 0.00 3.16
2499 3503 3.662759 TTGGAGGAGGTTTTGACTTGT 57.337 42.857 0.00 0.00 0.00 3.16
2500 3504 4.781775 TTGGAGGAGGTTTTGACTTGTA 57.218 40.909 0.00 0.00 0.00 2.41
2501 3505 4.351874 TGGAGGAGGTTTTGACTTGTAG 57.648 45.455 0.00 0.00 0.00 2.74
2502 3506 3.971305 TGGAGGAGGTTTTGACTTGTAGA 59.029 43.478 0.00 0.00 0.00 2.59
2503 3507 4.040461 TGGAGGAGGTTTTGACTTGTAGAG 59.960 45.833 0.00 0.00 0.00 2.43
2504 3508 4.563786 GGAGGAGGTTTTGACTTGTAGAGG 60.564 50.000 0.00 0.00 0.00 3.69
2505 3509 3.328050 AGGAGGTTTTGACTTGTAGAGGG 59.672 47.826 0.00 0.00 0.00 4.30
2506 3510 3.072622 GGAGGTTTTGACTTGTAGAGGGT 59.927 47.826 0.00 0.00 0.00 4.34
2507 3511 4.065789 GAGGTTTTGACTTGTAGAGGGTG 58.934 47.826 0.00 0.00 0.00 4.61
2508 3512 2.552743 GGTTTTGACTTGTAGAGGGTGC 59.447 50.000 0.00 0.00 0.00 5.01
2509 3513 3.211045 GTTTTGACTTGTAGAGGGTGCA 58.789 45.455 0.00 0.00 0.00 4.57
2510 3514 3.569194 TTTGACTTGTAGAGGGTGCAA 57.431 42.857 0.00 0.00 0.00 4.08
2511 3515 3.788227 TTGACTTGTAGAGGGTGCAAT 57.212 42.857 0.00 0.00 29.44 3.56
2512 3516 3.334583 TGACTTGTAGAGGGTGCAATC 57.665 47.619 0.00 0.00 29.44 2.67
2513 3517 2.027192 TGACTTGTAGAGGGTGCAATCC 60.027 50.000 0.00 0.00 29.44 3.01
2524 3528 2.981302 GCAATCCCTGCCAAACCC 59.019 61.111 0.00 0.00 46.13 4.11
2525 3529 2.659063 GCAATCCCTGCCAAACCCC 61.659 63.158 0.00 0.00 46.13 4.95
2526 3530 1.079073 CAATCCCTGCCAAACCCCT 59.921 57.895 0.00 0.00 0.00 4.79
2527 3531 0.972471 CAATCCCTGCCAAACCCCTC 60.972 60.000 0.00 0.00 0.00 4.30
2528 3532 2.168272 AATCCCTGCCAAACCCCTCC 62.168 60.000 0.00 0.00 0.00 4.30
2529 3533 3.589542 CCCTGCCAAACCCCTCCA 61.590 66.667 0.00 0.00 0.00 3.86
2530 3534 2.772924 CCTGCCAAACCCCTCCAT 59.227 61.111 0.00 0.00 0.00 3.41
2531 3535 1.079073 CCTGCCAAACCCCTCCATT 59.921 57.895 0.00 0.00 0.00 3.16
2532 3536 0.545071 CCTGCCAAACCCCTCCATTT 60.545 55.000 0.00 0.00 0.00 2.32
2533 3537 1.351076 CTGCCAAACCCCTCCATTTT 58.649 50.000 0.00 0.00 0.00 1.82
2534 3538 1.276138 CTGCCAAACCCCTCCATTTTC 59.724 52.381 0.00 0.00 0.00 2.29
2535 3539 0.613260 GCCAAACCCCTCCATTTTCC 59.387 55.000 0.00 0.00 0.00 3.13
2536 3540 1.275666 CCAAACCCCTCCATTTTCCC 58.724 55.000 0.00 0.00 0.00 3.97
2537 3541 1.275666 CAAACCCCTCCATTTTCCCC 58.724 55.000 0.00 0.00 0.00 4.81
2538 3542 0.252057 AAACCCCTCCATTTTCCCCG 60.252 55.000 0.00 0.00 0.00 5.73
2539 3543 1.440362 AACCCCTCCATTTTCCCCGT 61.440 55.000 0.00 0.00 0.00 5.28
2540 3544 1.076995 CCCCTCCATTTTCCCCGTC 60.077 63.158 0.00 0.00 0.00 4.79
2541 3545 1.688811 CCCTCCATTTTCCCCGTCA 59.311 57.895 0.00 0.00 0.00 4.35
2542 3546 0.039035 CCCTCCATTTTCCCCGTCAA 59.961 55.000 0.00 0.00 0.00 3.18
2543 3547 1.173913 CCTCCATTTTCCCCGTCAAC 58.826 55.000 0.00 0.00 0.00 3.18
2544 3548 1.173913 CTCCATTTTCCCCGTCAACC 58.826 55.000 0.00 0.00 0.00 3.77
2545 3549 0.606944 TCCATTTTCCCCGTCAACCG 60.607 55.000 0.00 0.00 0.00 4.44
2546 3550 0.606944 CCATTTTCCCCGTCAACCGA 60.607 55.000 0.00 0.00 39.56 4.69
2547 3551 1.240256 CATTTTCCCCGTCAACCGAA 58.760 50.000 0.00 0.00 39.56 4.30
2548 3552 1.068816 CATTTTCCCCGTCAACCGAAC 60.069 52.381 0.00 0.00 39.56 3.95
2549 3553 0.107312 TTTTCCCCGTCAACCGAACA 60.107 50.000 0.00 0.00 39.56 3.18
2550 3554 0.107312 TTTCCCCGTCAACCGAACAA 60.107 50.000 0.00 0.00 39.56 2.83
2551 3555 0.533308 TTCCCCGTCAACCGAACAAG 60.533 55.000 0.00 0.00 39.56 3.16
2552 3556 2.613506 CCCCGTCAACCGAACAAGC 61.614 63.158 0.00 0.00 39.56 4.01
2553 3557 2.613506 CCCGTCAACCGAACAAGCC 61.614 63.158 0.00 0.00 39.56 4.35
2554 3558 2.613506 CCGTCAACCGAACAAGCCC 61.614 63.158 0.00 0.00 39.56 5.19
2563 3567 1.804748 CCGAACAAGCCCTTAGTGTTC 59.195 52.381 5.83 5.83 44.93 3.18
2574 3578 1.326548 CTTAGTGTTCGGGCGTATTGC 59.673 52.381 0.00 0.00 45.38 3.56
2592 3596 3.916359 TGCCGTTTTCCATCCTACATA 57.084 42.857 0.00 0.00 0.00 2.29
2606 3610 6.239973 CCATCCTACATAATCCCAACTGATCA 60.240 42.308 0.00 0.00 0.00 2.92
2610 3614 7.072328 TCCTACATAATCCCAACTGATCATCAA 59.928 37.037 0.00 0.00 0.00 2.57
2631 3635 2.858745 ACCATATACACCGAAATGGCC 58.141 47.619 0.00 0.00 42.21 5.36
2632 3636 2.441750 ACCATATACACCGAAATGGCCT 59.558 45.455 3.32 0.00 42.21 5.19
2633 3637 3.074412 CCATATACACCGAAATGGCCTC 58.926 50.000 3.32 0.00 43.94 4.70
2634 3638 2.922740 TATACACCGAAATGGCCTCC 57.077 50.000 3.32 0.00 43.94 4.30
2635 3639 1.213296 ATACACCGAAATGGCCTCCT 58.787 50.000 3.32 0.00 43.94 3.69
2636 3640 0.988832 TACACCGAAATGGCCTCCTT 59.011 50.000 3.32 0.00 43.94 3.36
2637 3641 0.112412 ACACCGAAATGGCCTCCTTT 59.888 50.000 3.32 0.73 43.94 3.11
2638 3642 0.811281 CACCGAAATGGCCTCCTTTC 59.189 55.000 3.32 9.87 43.94 2.62
2639 3643 0.323451 ACCGAAATGGCCTCCTTTCC 60.323 55.000 3.32 0.00 43.94 3.13
2640 3644 0.034089 CCGAAATGGCCTCCTTTCCT 60.034 55.000 3.32 0.00 0.00 3.36
2641 3645 1.098050 CGAAATGGCCTCCTTTCCTG 58.902 55.000 3.32 0.00 0.00 3.86
2642 3646 1.614317 CGAAATGGCCTCCTTTCCTGT 60.614 52.381 3.32 0.00 0.00 4.00
2643 3647 2.355716 CGAAATGGCCTCCTTTCCTGTA 60.356 50.000 3.32 0.00 0.00 2.74
2644 3648 3.282885 GAAATGGCCTCCTTTCCTGTAG 58.717 50.000 3.32 0.00 0.00 2.74
2645 3649 0.548510 ATGGCCTCCTTTCCTGTAGC 59.451 55.000 3.32 0.00 0.00 3.58
2646 3650 0.547712 TGGCCTCCTTTCCTGTAGCT 60.548 55.000 3.32 0.00 0.00 3.32
2647 3651 0.621082 GGCCTCCTTTCCTGTAGCTT 59.379 55.000 0.00 0.00 0.00 3.74
2648 3652 1.407575 GGCCTCCTTTCCTGTAGCTTC 60.408 57.143 0.00 0.00 0.00 3.86
2649 3653 1.407575 GCCTCCTTTCCTGTAGCTTCC 60.408 57.143 0.00 0.00 0.00 3.46
2650 3654 1.210722 CCTCCTTTCCTGTAGCTTCCC 59.789 57.143 0.00 0.00 0.00 3.97
2651 3655 2.192263 CTCCTTTCCTGTAGCTTCCCT 58.808 52.381 0.00 0.00 0.00 4.20
2652 3656 3.375699 CTCCTTTCCTGTAGCTTCCCTA 58.624 50.000 0.00 0.00 0.00 3.53
2653 3657 3.105283 TCCTTTCCTGTAGCTTCCCTAC 58.895 50.000 0.00 0.00 45.44 3.18
2654 3658 3.108376 CCTTTCCTGTAGCTTCCCTACT 58.892 50.000 0.00 0.00 45.44 2.57
2655 3659 3.519913 CCTTTCCTGTAGCTTCCCTACTT 59.480 47.826 0.00 0.00 45.44 2.24
2656 3660 4.019231 CCTTTCCTGTAGCTTCCCTACTTT 60.019 45.833 0.00 0.00 45.44 2.66
2657 3661 4.553330 TTCCTGTAGCTTCCCTACTTTG 57.447 45.455 0.00 0.00 45.44 2.77
2658 3662 2.236395 TCCTGTAGCTTCCCTACTTTGC 59.764 50.000 0.00 0.00 45.44 3.68
2659 3663 2.237392 CCTGTAGCTTCCCTACTTTGCT 59.763 50.000 0.00 0.00 45.44 3.91
2660 3664 3.265791 CTGTAGCTTCCCTACTTTGCTG 58.734 50.000 0.00 0.00 45.44 4.41
2661 3665 2.027192 TGTAGCTTCCCTACTTTGCTGG 60.027 50.000 0.00 0.00 45.44 4.85
2662 3666 0.322906 AGCTTCCCTACTTTGCTGGC 60.323 55.000 0.00 0.00 32.32 4.85
2663 3667 0.609131 GCTTCCCTACTTTGCTGGCA 60.609 55.000 0.00 0.00 0.00 4.92
2664 3668 1.168714 CTTCCCTACTTTGCTGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
2665 3669 0.251165 TTCCCTACTTTGCTGGCACC 60.251 55.000 0.00 0.00 0.00 5.01
2666 3670 1.074775 CCCTACTTTGCTGGCACCA 59.925 57.895 0.00 0.00 0.00 4.17
2667 3671 0.323725 CCCTACTTTGCTGGCACCAT 60.324 55.000 0.00 0.00 0.00 3.55
2668 3672 1.064758 CCCTACTTTGCTGGCACCATA 60.065 52.381 0.00 0.00 0.00 2.74
2669 3673 2.423373 CCCTACTTTGCTGGCACCATAT 60.423 50.000 0.00 0.00 0.00 1.78
2670 3674 3.181445 CCCTACTTTGCTGGCACCATATA 60.181 47.826 0.00 0.00 0.00 0.86
2671 3675 3.815401 CCTACTTTGCTGGCACCATATAC 59.185 47.826 0.00 0.00 0.00 1.47
2672 3676 3.364460 ACTTTGCTGGCACCATATACA 57.636 42.857 0.00 0.00 0.00 2.29
2673 3677 3.016736 ACTTTGCTGGCACCATATACAC 58.983 45.455 0.00 0.00 0.00 2.90
2674 3678 2.051334 TTGCTGGCACCATATACACC 57.949 50.000 0.00 0.00 0.00 4.16
2675 3679 0.179059 TGCTGGCACCATATACACCG 60.179 55.000 0.00 0.00 0.00 4.94
2676 3680 0.105964 GCTGGCACCATATACACCGA 59.894 55.000 0.00 0.00 0.00 4.69
2677 3681 1.474320 GCTGGCACCATATACACCGAA 60.474 52.381 0.00 0.00 0.00 4.30
2678 3682 2.912771 CTGGCACCATATACACCGAAA 58.087 47.619 0.00 0.00 0.00 3.46
2679 3683 3.476552 CTGGCACCATATACACCGAAAT 58.523 45.455 0.00 0.00 0.00 2.17
2680 3684 3.210227 TGGCACCATATACACCGAAATG 58.790 45.455 0.00 0.00 0.00 2.32
2681 3685 2.552315 GGCACCATATACACCGAAATGG 59.448 50.000 0.00 0.00 43.73 3.16
2682 3686 2.031157 GCACCATATACACCGAAATGGC 60.031 50.000 0.18 0.00 42.21 4.40
2716 3720 1.168714 CTTCCCTACTTTGCTGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
2723 3727 0.105964 ACTTTGCTGGCACGTGTAGA 59.894 50.000 18.38 0.08 0.00 2.59
2785 3789 7.067372 CCAATTCACTCATACATTTGCCTCTTA 59.933 37.037 0.00 0.00 0.00 2.10
2791 3795 7.496920 CACTCATACATTTGCCTCTTAGAATCA 59.503 37.037 0.00 0.00 0.00 2.57
2802 3806 4.803088 CCTCTTAGAATCACTCTTTCTGCG 59.197 45.833 0.00 0.00 35.19 5.18
2812 3816 3.058708 CACTCTTTCTGCGCTGATTTTCA 60.059 43.478 18.14 0.00 0.00 2.69
2817 3821 0.383231 CTGCGCTGATTTTCATCCCC 59.617 55.000 9.73 0.00 0.00 4.81
2821 3825 2.353605 GCGCTGATTTTCATCCCCAAAA 60.354 45.455 0.00 0.00 0.00 2.44
2886 3890 6.642950 CGTATATCCAATCTCTCAACCTTGTC 59.357 42.308 0.00 0.00 0.00 3.18
2887 3891 4.916041 ATCCAATCTCTCAACCTTGTCA 57.084 40.909 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.406104 AGAAAGGAAACCATACTAGCAGAAAT 58.594 34.615 0.00 0.00 0.00 2.17
97 98 5.357032 CCGGGAAACTTGATAAGCTTAACAT 59.643 40.000 16.16 2.61 0.00 2.71
181 182 0.755686 GTCTCTGAATGGGCCGATCT 59.244 55.000 0.00 0.00 0.00 2.75
195 196 1.752694 GCTCCTCAGCTCGGTCTCT 60.753 63.158 0.00 0.00 43.09 3.10
197 198 2.757917 GGCTCCTCAGCTCGGTCT 60.758 66.667 0.00 0.00 46.03 3.85
253 254 8.644374 AAAAACAACCAGGCATACTAAATAGA 57.356 30.769 0.00 0.00 0.00 1.98
349 1189 0.611618 CCACCTGCCAAGTGCCAATA 60.612 55.000 0.00 0.00 40.16 1.90
406 1246 7.552050 AGCTAGACTCAAGCCTAATGAATAT 57.448 36.000 0.00 0.00 41.02 1.28
407 1247 6.985653 AGCTAGACTCAAGCCTAATGAATA 57.014 37.500 0.00 0.00 41.02 1.75
568 1408 4.466015 GGAAACCAGGCAATAGATTCCAAA 59.534 41.667 0.00 0.00 35.92 3.28
569 1409 4.023291 GGAAACCAGGCAATAGATTCCAA 58.977 43.478 0.00 0.00 35.92 3.53
743 1583 0.747283 CCATGGCAGAGAGGCTTGTC 60.747 60.000 0.00 0.00 43.71 3.18
959 1804 1.492993 AAAGACACCCCTCCCTCTGC 61.493 60.000 0.00 0.00 0.00 4.26
960 1805 1.068121 AAAAGACACCCCTCCCTCTG 58.932 55.000 0.00 0.00 0.00 3.35
965 1822 2.658807 AACTCAAAAGACACCCCTCC 57.341 50.000 0.00 0.00 0.00 4.30
1101 2002 2.813754 GCAAGTGACATAAGAAGGCACA 59.186 45.455 1.69 0.00 32.16 4.57
1155 2069 4.095782 TGATCACACACATGCATGATTCAG 59.904 41.667 32.75 17.97 31.96 3.02
1156 2070 4.011023 TGATCACACACATGCATGATTCA 58.989 39.130 32.75 18.41 31.96 2.57
1157 2071 4.095932 ACTGATCACACACATGCATGATTC 59.904 41.667 32.75 16.40 31.96 2.52
1158 2072 4.014406 ACTGATCACACACATGCATGATT 58.986 39.130 32.75 15.68 31.96 2.57
1159 2073 3.377172 CACTGATCACACACATGCATGAT 59.623 43.478 32.75 15.69 34.50 2.45
1160 2074 2.745281 CACTGATCACACACATGCATGA 59.255 45.455 32.75 11.01 0.00 3.07
1161 2075 2.486592 ACACTGATCACACACATGCATG 59.513 45.455 25.09 25.09 0.00 4.06
1162 2076 2.486592 CACACTGATCACACACATGCAT 59.513 45.455 0.00 0.00 0.00 3.96
1163 2077 1.874872 CACACTGATCACACACATGCA 59.125 47.619 0.00 0.00 0.00 3.96
1164 2078 1.400629 GCACACTGATCACACACATGC 60.401 52.381 0.00 0.00 0.00 4.06
1165 2079 1.136169 CGCACACTGATCACACACATG 60.136 52.381 0.00 0.00 0.00 3.21
1166 2080 1.150827 CGCACACTGATCACACACAT 58.849 50.000 0.00 0.00 0.00 3.21
1167 2081 1.498043 GCGCACACTGATCACACACA 61.498 55.000 0.30 0.00 0.00 3.72
1198 2112 2.604686 ACTCCGCCTTCTCCTGCA 60.605 61.111 0.00 0.00 0.00 4.41
1533 2447 2.091541 GCTGACGGATGGAATGGAAAA 58.908 47.619 0.00 0.00 0.00 2.29
1578 2513 0.605083 TGTAGCTCAGCCACTGACTG 59.395 55.000 0.00 0.00 35.39 3.51
1583 2518 8.525290 AAAATAAAATATGTAGCTCAGCCACT 57.475 30.769 0.00 0.00 0.00 4.00
1635 2570 2.549754 CAAGAAGACAGACGGCAAACAT 59.450 45.455 0.00 0.00 0.00 2.71
1643 2578 4.559251 CGAAACCTATCAAGAAGACAGACG 59.441 45.833 0.00 0.00 0.00 4.18
1908 2883 2.883386 AGCTTTGAAAACTCTGAGCTGG 59.117 45.455 4.19 0.00 38.88 4.85
2145 3120 1.527433 GGAGAAAAGGTGGCAGTGGC 61.527 60.000 10.30 10.30 40.13 5.01
2146 3121 0.111253 AGGAGAAAAGGTGGCAGTGG 59.889 55.000 0.00 0.00 0.00 4.00
2147 3122 1.202806 TGAGGAGAAAAGGTGGCAGTG 60.203 52.381 0.00 0.00 0.00 3.66
2148 3123 1.072965 CTGAGGAGAAAAGGTGGCAGT 59.927 52.381 0.00 0.00 0.00 4.40
2149 3124 1.818642 CTGAGGAGAAAAGGTGGCAG 58.181 55.000 0.00 0.00 0.00 4.85
2150 3125 0.250901 GCTGAGGAGAAAAGGTGGCA 60.251 55.000 0.00 0.00 0.00 4.92
2151 3126 1.301677 CGCTGAGGAGAAAAGGTGGC 61.302 60.000 0.00 0.00 0.00 5.01
2193 3168 7.788026 TCTTATATTTCTTTGCGGAGGAAGTA 58.212 34.615 0.00 0.00 40.30 2.24
2195 3170 6.763610 ACTCTTATATTTCTTTGCGGAGGAAG 59.236 38.462 0.00 0.00 40.30 3.46
2196 3171 6.538742 CACTCTTATATTTCTTTGCGGAGGAA 59.461 38.462 0.00 0.00 34.77 3.36
2197 3172 6.049149 CACTCTTATATTTCTTTGCGGAGGA 58.951 40.000 0.00 0.00 0.00 3.71
2198 3173 5.817816 ACACTCTTATATTTCTTTGCGGAGG 59.182 40.000 0.00 0.00 0.00 4.30
2199 3174 6.910536 ACACTCTTATATTTCTTTGCGGAG 57.089 37.500 0.00 0.00 0.00 4.63
2200 3175 7.681939 AAACACTCTTATATTTCTTTGCGGA 57.318 32.000 0.00 0.00 0.00 5.54
2201 3176 8.879759 TCTAAACACTCTTATATTTCTTTGCGG 58.120 33.333 0.00 0.00 0.00 5.69
2228 3203 9.811995 AGCGTTTACATCACTACTTTATAATGA 57.188 29.630 5.43 0.00 0.00 2.57
2229 3204 9.849607 CAGCGTTTACATCACTACTTTATAATG 57.150 33.333 0.00 0.00 0.00 1.90
2230 3205 9.811995 TCAGCGTTTACATCACTACTTTATAAT 57.188 29.630 0.00 0.00 0.00 1.28
2231 3206 9.297586 CTCAGCGTTTACATCACTACTTTATAA 57.702 33.333 0.00 0.00 0.00 0.98
2232 3207 7.919091 CCTCAGCGTTTACATCACTACTTTATA 59.081 37.037 0.00 0.00 0.00 0.98
2233 3208 6.757010 CCTCAGCGTTTACATCACTACTTTAT 59.243 38.462 0.00 0.00 0.00 1.40
2234 3209 6.097356 CCTCAGCGTTTACATCACTACTTTA 58.903 40.000 0.00 0.00 0.00 1.85
2235 3210 4.929808 CCTCAGCGTTTACATCACTACTTT 59.070 41.667 0.00 0.00 0.00 2.66
2236 3211 4.495422 CCTCAGCGTTTACATCACTACTT 58.505 43.478 0.00 0.00 0.00 2.24
2237 3212 3.119101 CCCTCAGCGTTTACATCACTACT 60.119 47.826 0.00 0.00 0.00 2.57
2238 3213 3.119245 TCCCTCAGCGTTTACATCACTAC 60.119 47.826 0.00 0.00 0.00 2.73
2239 3214 3.093814 TCCCTCAGCGTTTACATCACTA 58.906 45.455 0.00 0.00 0.00 2.74
2240 3215 1.899814 TCCCTCAGCGTTTACATCACT 59.100 47.619 0.00 0.00 0.00 3.41
2241 3216 2.271800 CTCCCTCAGCGTTTACATCAC 58.728 52.381 0.00 0.00 0.00 3.06
2242 3217 1.899814 ACTCCCTCAGCGTTTACATCA 59.100 47.619 0.00 0.00 0.00 3.07
2243 3218 2.674796 ACTCCCTCAGCGTTTACATC 57.325 50.000 0.00 0.00 0.00 3.06
2244 3219 4.755266 AATACTCCCTCAGCGTTTACAT 57.245 40.909 0.00 0.00 0.00 2.29
2245 3220 4.020928 TCAAATACTCCCTCAGCGTTTACA 60.021 41.667 0.00 0.00 0.00 2.41
2246 3221 4.501071 TCAAATACTCCCTCAGCGTTTAC 58.499 43.478 0.00 0.00 0.00 2.01
2247 3222 4.811969 TCAAATACTCCCTCAGCGTTTA 57.188 40.909 0.00 0.00 0.00 2.01
2248 3223 3.695830 TCAAATACTCCCTCAGCGTTT 57.304 42.857 0.00 0.00 0.00 3.60
2249 3224 3.914426 ATCAAATACTCCCTCAGCGTT 57.086 42.857 0.00 0.00 0.00 4.84
2250 3225 4.406003 ACTTATCAAATACTCCCTCAGCGT 59.594 41.667 0.00 0.00 0.00 5.07
2251 3226 4.950050 ACTTATCAAATACTCCCTCAGCG 58.050 43.478 0.00 0.00 0.00 5.18
2252 3227 7.727181 TCTAACTTATCAAATACTCCCTCAGC 58.273 38.462 0.00 0.00 0.00 4.26
2253 3228 9.703892 CATCTAACTTATCAAATACTCCCTCAG 57.296 37.037 0.00 0.00 0.00 3.35
2254 3229 8.150945 GCATCTAACTTATCAAATACTCCCTCA 58.849 37.037 0.00 0.00 0.00 3.86
2255 3230 8.371699 AGCATCTAACTTATCAAATACTCCCTC 58.628 37.037 0.00 0.00 0.00 4.30
2256 3231 8.268878 AGCATCTAACTTATCAAATACTCCCT 57.731 34.615 0.00 0.00 0.00 4.20
2257 3232 8.910351 AAGCATCTAACTTATCAAATACTCCC 57.090 34.615 0.00 0.00 0.00 4.30
2266 3241 8.978472 ACCTTGTAGTAAGCATCTAACTTATCA 58.022 33.333 0.00 0.00 32.53 2.15
2287 3262 0.455633 GCAAAGCGAGCATCACCTTG 60.456 55.000 0.00 0.00 33.17 3.61
2295 3270 1.444119 AAGAAACGGCAAAGCGAGCA 61.444 50.000 0.00 0.00 0.00 4.26
2297 3272 1.798813 ACTAAGAAACGGCAAAGCGAG 59.201 47.619 0.00 0.00 0.00 5.03
2298 3273 1.796459 GACTAAGAAACGGCAAAGCGA 59.204 47.619 0.00 0.00 0.00 4.93
2307 3282 8.184848 TCAACTCTATCTCATGACTAAGAAACG 58.815 37.037 0.00 0.00 0.00 3.60
2314 3289 7.594351 AATGCTCAACTCTATCTCATGACTA 57.406 36.000 0.00 0.00 0.00 2.59
2315 3290 6.482898 AATGCTCAACTCTATCTCATGACT 57.517 37.500 0.00 0.00 0.00 3.41
2354 3357 6.638468 GTCAACTCAGTTTGGTTTGATTCATC 59.362 38.462 0.00 0.00 0.00 2.92
2356 3359 5.163561 GGTCAACTCAGTTTGGTTTGATTCA 60.164 40.000 0.00 0.00 0.00 2.57
2360 3363 2.680841 CGGTCAACTCAGTTTGGTTTGA 59.319 45.455 0.00 0.00 0.00 2.69
2390 3393 7.775053 ACCAAACACCATAAACTGAATACAT 57.225 32.000 0.00 0.00 0.00 2.29
2392 3395 6.799925 CGAACCAAACACCATAAACTGAATAC 59.200 38.462 0.00 0.00 0.00 1.89
2426 3430 8.709646 CGAACAAAGTCTAAAACAACTAGCTAT 58.290 33.333 0.00 0.00 0.00 2.97
2435 3439 6.774084 GTGTAACCGAACAAAGTCTAAAACA 58.226 36.000 0.00 0.00 0.00 2.83
2453 3457 3.008704 ACCCCACAATGAGTAGGTGTAAC 59.991 47.826 0.00 0.00 35.38 2.50
2454 3458 3.008594 CACCCCACAATGAGTAGGTGTAA 59.991 47.826 8.31 0.00 43.68 2.41
2455 3459 2.569853 CACCCCACAATGAGTAGGTGTA 59.430 50.000 8.31 0.00 43.68 2.90
2456 3460 1.351017 CACCCCACAATGAGTAGGTGT 59.649 52.381 8.31 0.00 43.68 4.16
2457 3461 1.340017 CCACCCCACAATGAGTAGGTG 60.340 57.143 9.17 9.17 46.19 4.00
2458 3462 0.991920 CCACCCCACAATGAGTAGGT 59.008 55.000 0.00 0.00 36.71 3.08
2459 3463 1.285280 TCCACCCCACAATGAGTAGG 58.715 55.000 0.00 0.00 0.00 3.18
2460 3464 3.282021 CAATCCACCCCACAATGAGTAG 58.718 50.000 0.00 0.00 0.00 2.57
2461 3465 2.025416 CCAATCCACCCCACAATGAGTA 60.025 50.000 0.00 0.00 0.00 2.59
2462 3466 1.272648 CCAATCCACCCCACAATGAGT 60.273 52.381 0.00 0.00 0.00 3.41
2463 3467 1.005805 TCCAATCCACCCCACAATGAG 59.994 52.381 0.00 0.00 0.00 2.90
2464 3468 1.005805 CTCCAATCCACCCCACAATGA 59.994 52.381 0.00 0.00 0.00 2.57
2465 3469 1.477553 CTCCAATCCACCCCACAATG 58.522 55.000 0.00 0.00 0.00 2.82
2466 3470 0.336048 CCTCCAATCCACCCCACAAT 59.664 55.000 0.00 0.00 0.00 2.71
2467 3471 0.774096 TCCTCCAATCCACCCCACAA 60.774 55.000 0.00 0.00 0.00 3.33
2468 3472 1.151699 TCCTCCAATCCACCCCACA 60.152 57.895 0.00 0.00 0.00 4.17
2469 3473 1.609783 CTCCTCCAATCCACCCCAC 59.390 63.158 0.00 0.00 0.00 4.61
2470 3474 1.619363 CCTCCTCCAATCCACCCCA 60.619 63.158 0.00 0.00 0.00 4.96
2471 3475 1.214992 AACCTCCTCCAATCCACCCC 61.215 60.000 0.00 0.00 0.00 4.95
2472 3476 0.704664 AAACCTCCTCCAATCCACCC 59.295 55.000 0.00 0.00 0.00 4.61
2473 3477 2.171003 CAAAACCTCCTCCAATCCACC 58.829 52.381 0.00 0.00 0.00 4.61
2474 3478 2.820197 GTCAAAACCTCCTCCAATCCAC 59.180 50.000 0.00 0.00 0.00 4.02
2475 3479 2.716424 AGTCAAAACCTCCTCCAATCCA 59.284 45.455 0.00 0.00 0.00 3.41
2476 3480 3.441500 AGTCAAAACCTCCTCCAATCC 57.558 47.619 0.00 0.00 0.00 3.01
2477 3481 4.145052 ACAAGTCAAAACCTCCTCCAATC 58.855 43.478 0.00 0.00 0.00 2.67
2478 3482 4.184649 ACAAGTCAAAACCTCCTCCAAT 57.815 40.909 0.00 0.00 0.00 3.16
2479 3483 3.662759 ACAAGTCAAAACCTCCTCCAA 57.337 42.857 0.00 0.00 0.00 3.53
2480 3484 3.971305 TCTACAAGTCAAAACCTCCTCCA 59.029 43.478 0.00 0.00 0.00 3.86
2481 3485 4.563786 CCTCTACAAGTCAAAACCTCCTCC 60.564 50.000 0.00 0.00 0.00 4.30
2482 3486 4.563786 CCCTCTACAAGTCAAAACCTCCTC 60.564 50.000 0.00 0.00 0.00 3.71
2483 3487 3.328050 CCCTCTACAAGTCAAAACCTCCT 59.672 47.826 0.00 0.00 0.00 3.69
2484 3488 3.072622 ACCCTCTACAAGTCAAAACCTCC 59.927 47.826 0.00 0.00 0.00 4.30
2485 3489 4.065789 CACCCTCTACAAGTCAAAACCTC 58.934 47.826 0.00 0.00 0.00 3.85
2486 3490 3.747708 GCACCCTCTACAAGTCAAAACCT 60.748 47.826 0.00 0.00 0.00 3.50
2487 3491 2.552743 GCACCCTCTACAAGTCAAAACC 59.447 50.000 0.00 0.00 0.00 3.27
2488 3492 3.211045 TGCACCCTCTACAAGTCAAAAC 58.789 45.455 0.00 0.00 0.00 2.43
2489 3493 3.569194 TGCACCCTCTACAAGTCAAAA 57.431 42.857 0.00 0.00 0.00 2.44
2490 3494 3.569194 TTGCACCCTCTACAAGTCAAA 57.431 42.857 0.00 0.00 0.00 2.69
2491 3495 3.559171 GGATTGCACCCTCTACAAGTCAA 60.559 47.826 0.00 0.00 0.00 3.18
2492 3496 2.027192 GGATTGCACCCTCTACAAGTCA 60.027 50.000 0.00 0.00 0.00 3.41
2493 3497 2.633488 GGATTGCACCCTCTACAAGTC 58.367 52.381 0.00 0.00 0.00 3.01
2494 3498 1.282157 GGGATTGCACCCTCTACAAGT 59.718 52.381 5.11 0.00 45.90 3.16
2495 3499 2.044123 GGGATTGCACCCTCTACAAG 57.956 55.000 5.11 0.00 45.90 3.16
2508 3512 0.972471 GAGGGGTTTGGCAGGGATTG 60.972 60.000 0.00 0.00 0.00 2.67
2509 3513 1.388133 GAGGGGTTTGGCAGGGATT 59.612 57.895 0.00 0.00 0.00 3.01
2510 3514 2.626467 GGAGGGGTTTGGCAGGGAT 61.626 63.158 0.00 0.00 0.00 3.85
2511 3515 3.264845 GGAGGGGTTTGGCAGGGA 61.265 66.667 0.00 0.00 0.00 4.20
2512 3516 2.460476 AATGGAGGGGTTTGGCAGGG 62.460 60.000 0.00 0.00 0.00 4.45
2513 3517 0.545071 AAATGGAGGGGTTTGGCAGG 60.545 55.000 0.00 0.00 0.00 4.85
2514 3518 1.276138 GAAAATGGAGGGGTTTGGCAG 59.724 52.381 0.00 0.00 0.00 4.85
2515 3519 1.347062 GAAAATGGAGGGGTTTGGCA 58.653 50.000 0.00 0.00 0.00 4.92
2516 3520 0.613260 GGAAAATGGAGGGGTTTGGC 59.387 55.000 0.00 0.00 0.00 4.52
2517 3521 1.275666 GGGAAAATGGAGGGGTTTGG 58.724 55.000 0.00 0.00 0.00 3.28
2518 3522 1.275666 GGGGAAAATGGAGGGGTTTG 58.724 55.000 0.00 0.00 0.00 2.93
2519 3523 0.252057 CGGGGAAAATGGAGGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
2520 3524 1.386550 CGGGGAAAATGGAGGGGTT 59.613 57.895 0.00 0.00 0.00 4.11
2521 3525 1.855451 ACGGGGAAAATGGAGGGGT 60.855 57.895 0.00 0.00 0.00 4.95
2522 3526 1.076995 GACGGGGAAAATGGAGGGG 60.077 63.158 0.00 0.00 0.00 4.79
2523 3527 0.039035 TTGACGGGGAAAATGGAGGG 59.961 55.000 0.00 0.00 0.00 4.30
2524 3528 1.173913 GTTGACGGGGAAAATGGAGG 58.826 55.000 0.00 0.00 0.00 4.30
2525 3529 1.173913 GGTTGACGGGGAAAATGGAG 58.826 55.000 0.00 0.00 0.00 3.86
2526 3530 0.606944 CGGTTGACGGGGAAAATGGA 60.607 55.000 0.00 0.00 39.42 3.41
2527 3531 0.606944 TCGGTTGACGGGGAAAATGG 60.607 55.000 0.00 0.00 44.45 3.16
2528 3532 1.068816 GTTCGGTTGACGGGGAAAATG 60.069 52.381 0.00 0.00 44.45 2.32
2529 3533 1.241165 GTTCGGTTGACGGGGAAAAT 58.759 50.000 0.00 0.00 44.45 1.82
2530 3534 0.107312 TGTTCGGTTGACGGGGAAAA 60.107 50.000 0.00 0.00 44.45 2.29
2531 3535 0.107312 TTGTTCGGTTGACGGGGAAA 60.107 50.000 0.00 0.00 44.45 3.13
2532 3536 0.533308 CTTGTTCGGTTGACGGGGAA 60.533 55.000 0.00 0.00 44.45 3.97
2533 3537 1.070105 CTTGTTCGGTTGACGGGGA 59.930 57.895 0.00 0.00 44.45 4.81
2534 3538 2.613506 GCTTGTTCGGTTGACGGGG 61.614 63.158 0.00 0.00 44.45 5.73
2535 3539 2.613506 GGCTTGTTCGGTTGACGGG 61.614 63.158 0.00 0.00 44.45 5.28
2536 3540 2.613506 GGGCTTGTTCGGTTGACGG 61.614 63.158 0.00 0.00 44.45 4.79
2537 3541 1.164041 AAGGGCTTGTTCGGTTGACG 61.164 55.000 0.00 0.00 46.11 4.35
2538 3542 1.804748 CTAAGGGCTTGTTCGGTTGAC 59.195 52.381 0.00 0.00 0.00 3.18
2539 3543 1.418637 ACTAAGGGCTTGTTCGGTTGA 59.581 47.619 0.00 0.00 0.00 3.18
2540 3544 1.535462 CACTAAGGGCTTGTTCGGTTG 59.465 52.381 0.00 0.00 0.00 3.77
2541 3545 1.142262 ACACTAAGGGCTTGTTCGGTT 59.858 47.619 0.00 0.00 0.00 4.44
2542 3546 0.763035 ACACTAAGGGCTTGTTCGGT 59.237 50.000 0.00 0.00 0.00 4.69
2543 3547 1.804748 GAACACTAAGGGCTTGTTCGG 59.195 52.381 0.00 0.00 39.69 4.30
2545 3549 1.804748 CCGAACACTAAGGGCTTGTTC 59.195 52.381 4.02 4.02 43.75 3.18
2546 3550 1.544759 CCCGAACACTAAGGGCTTGTT 60.545 52.381 0.00 0.00 38.51 2.83
2547 3551 0.036306 CCCGAACACTAAGGGCTTGT 59.964 55.000 0.00 0.00 38.51 3.16
2548 3552 2.854522 CCCGAACACTAAGGGCTTG 58.145 57.895 0.00 0.00 38.51 4.01
2553 3557 1.931172 CAATACGCCCGAACACTAAGG 59.069 52.381 0.00 0.00 0.00 2.69
2554 3558 1.326548 GCAATACGCCCGAACACTAAG 59.673 52.381 0.00 0.00 32.94 2.18
2567 3571 2.014128 AGGATGGAAAACGGCAATACG 58.986 47.619 0.00 0.00 40.31 3.06
2574 3578 4.760204 GGGATTATGTAGGATGGAAAACGG 59.240 45.833 0.00 0.00 0.00 4.44
2582 3586 6.772605 TGATCAGTTGGGATTATGTAGGATG 58.227 40.000 0.00 0.00 0.00 3.51
2592 3596 4.676109 TGGTTTGATGATCAGTTGGGATT 58.324 39.130 0.09 0.00 0.00 3.01
2606 3610 5.009610 GCCATTTCGGTGTATATGGTTTGAT 59.990 40.000 0.00 0.00 39.75 2.57
2610 3614 3.117663 AGGCCATTTCGGTGTATATGGTT 60.118 43.478 5.01 0.00 39.75 3.67
2631 3635 2.192263 AGGGAAGCTACAGGAAAGGAG 58.808 52.381 0.00 0.00 0.00 3.69
2632 3636 2.344093 AGGGAAGCTACAGGAAAGGA 57.656 50.000 0.00 0.00 0.00 3.36
2633 3637 3.108376 AGTAGGGAAGCTACAGGAAAGG 58.892 50.000 0.00 0.00 0.00 3.11
2634 3638 4.828072 AAGTAGGGAAGCTACAGGAAAG 57.172 45.455 0.00 0.00 0.00 2.62
2635 3639 4.806286 GCAAAGTAGGGAAGCTACAGGAAA 60.806 45.833 0.00 0.00 0.00 3.13
2636 3640 3.307480 GCAAAGTAGGGAAGCTACAGGAA 60.307 47.826 0.00 0.00 0.00 3.36
2637 3641 2.236395 GCAAAGTAGGGAAGCTACAGGA 59.764 50.000 0.00 0.00 0.00 3.86
2638 3642 2.237392 AGCAAAGTAGGGAAGCTACAGG 59.763 50.000 0.00 0.00 33.06 4.00
2639 3643 3.265791 CAGCAAAGTAGGGAAGCTACAG 58.734 50.000 0.00 0.00 33.59 2.74
2640 3644 2.027192 CCAGCAAAGTAGGGAAGCTACA 60.027 50.000 0.00 0.00 33.59 2.74
2641 3645 2.633488 CCAGCAAAGTAGGGAAGCTAC 58.367 52.381 0.00 0.00 33.59 3.58
2642 3646 1.065418 GCCAGCAAAGTAGGGAAGCTA 60.065 52.381 0.00 0.00 33.59 3.32
2643 3647 0.322906 GCCAGCAAAGTAGGGAAGCT 60.323 55.000 0.00 0.00 35.63 3.74
2644 3648 0.609131 TGCCAGCAAAGTAGGGAAGC 60.609 55.000 0.00 0.00 0.00 3.86
2645 3649 1.168714 GTGCCAGCAAAGTAGGGAAG 58.831 55.000 0.00 0.00 0.00 3.46
2646 3650 0.251165 GGTGCCAGCAAAGTAGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
2647 3651 1.378762 GGTGCCAGCAAAGTAGGGA 59.621 57.895 0.00 0.00 0.00 4.20
2648 3652 0.323725 ATGGTGCCAGCAAAGTAGGG 60.324 55.000 0.00 0.00 0.00 3.53
2649 3653 2.418368 TATGGTGCCAGCAAAGTAGG 57.582 50.000 0.00 0.00 0.00 3.18
2650 3654 4.273480 GTGTATATGGTGCCAGCAAAGTAG 59.727 45.833 0.00 0.00 0.00 2.57
2651 3655 4.196193 GTGTATATGGTGCCAGCAAAGTA 58.804 43.478 0.00 0.00 0.00 2.24
2652 3656 3.016736 GTGTATATGGTGCCAGCAAAGT 58.983 45.455 0.00 0.00 0.00 2.66
2653 3657 2.358898 GGTGTATATGGTGCCAGCAAAG 59.641 50.000 0.00 0.00 0.00 2.77
2654 3658 2.374184 GGTGTATATGGTGCCAGCAAA 58.626 47.619 0.00 0.00 0.00 3.68
2655 3659 1.745484 CGGTGTATATGGTGCCAGCAA 60.745 52.381 0.00 0.00 0.00 3.91
2656 3660 0.179059 CGGTGTATATGGTGCCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
2657 3661 0.105964 TCGGTGTATATGGTGCCAGC 59.894 55.000 0.00 0.00 0.00 4.85
2658 3662 2.613026 TTCGGTGTATATGGTGCCAG 57.387 50.000 0.00 0.00 0.00 4.85
2659 3663 3.210227 CATTTCGGTGTATATGGTGCCA 58.790 45.455 0.00 0.00 0.00 4.92
2660 3664 2.552315 CCATTTCGGTGTATATGGTGCC 59.448 50.000 0.00 0.00 34.23 5.01
2661 3665 2.031157 GCCATTTCGGTGTATATGGTGC 60.031 50.000 0.00 0.00 39.75 5.01
2662 3666 2.552315 GGCCATTTCGGTGTATATGGTG 59.448 50.000 0.00 0.00 39.75 4.17
2663 3667 2.441750 AGGCCATTTCGGTGTATATGGT 59.558 45.455 5.01 0.00 39.75 3.55
2664 3668 3.074412 GAGGCCATTTCGGTGTATATGG 58.926 50.000 5.01 0.00 40.39 2.74
2665 3669 3.074412 GGAGGCCATTTCGGTGTATATG 58.926 50.000 5.01 0.00 36.97 1.78
2666 3670 2.979678 AGGAGGCCATTTCGGTGTATAT 59.020 45.455 5.01 0.00 36.97 0.86
2667 3671 2.404559 AGGAGGCCATTTCGGTGTATA 58.595 47.619 5.01 0.00 36.97 1.47
2668 3672 1.213296 AGGAGGCCATTTCGGTGTAT 58.787 50.000 5.01 0.00 36.97 2.29
2669 3673 0.988832 AAGGAGGCCATTTCGGTGTA 59.011 50.000 5.01 0.00 36.97 2.90
2670 3674 0.112412 AAAGGAGGCCATTTCGGTGT 59.888 50.000 5.01 0.00 36.97 4.16
2671 3675 0.811281 GAAAGGAGGCCATTTCGGTG 59.189 55.000 5.01 0.00 36.97 4.94
2672 3676 0.323451 GGAAAGGAGGCCATTTCGGT 60.323 55.000 5.01 0.00 36.49 4.69
2673 3677 0.034089 AGGAAAGGAGGCCATTTCGG 60.034 55.000 5.01 0.00 36.49 4.30
2674 3678 1.098050 CAGGAAAGGAGGCCATTTCG 58.902 55.000 5.01 0.00 36.49 3.46
2675 3679 2.222227 ACAGGAAAGGAGGCCATTTC 57.778 50.000 5.01 12.32 35.19 2.17
2676 3680 3.076032 AGTTACAGGAAAGGAGGCCATTT 59.924 43.478 5.01 2.37 0.00 2.32
2677 3681 2.649816 AGTTACAGGAAAGGAGGCCATT 59.350 45.455 5.01 0.00 0.00 3.16
2678 3682 2.279173 AGTTACAGGAAAGGAGGCCAT 58.721 47.619 5.01 0.00 0.00 4.40
2679 3683 1.742308 AGTTACAGGAAAGGAGGCCA 58.258 50.000 5.01 0.00 0.00 5.36
2680 3684 2.618302 GGAAGTTACAGGAAAGGAGGCC 60.618 54.545 0.00 0.00 0.00 5.19
2681 3685 2.618302 GGGAAGTTACAGGAAAGGAGGC 60.618 54.545 0.00 0.00 0.00 4.70
2682 3686 2.913617 AGGGAAGTTACAGGAAAGGAGG 59.086 50.000 0.00 0.00 0.00 4.30
2716 3720 3.246936 CACATTGGATCATGCTCTACACG 59.753 47.826 0.00 0.00 0.00 4.49
2785 3789 2.028658 TCAGCGCAGAAAGAGTGATTCT 60.029 45.455 11.47 0.00 37.62 2.40
2791 3795 3.141398 TGAAAATCAGCGCAGAAAGAGT 58.859 40.909 11.47 0.00 0.00 3.24
2802 3806 4.806640 TCTTTTGGGGATGAAAATCAGC 57.193 40.909 0.00 0.00 30.81 4.26
2812 3816 4.293368 AGAGATTGGAGTTCTTTTGGGGAT 59.707 41.667 0.00 0.00 0.00 3.85
2817 3821 5.767168 AGGTTGAGAGATTGGAGTTCTTTTG 59.233 40.000 0.00 0.00 0.00 2.44
2821 3825 5.337788 ACTAGGTTGAGAGATTGGAGTTCT 58.662 41.667 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.