Multiple sequence alignment - TraesCS2A01G251600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G251600 chr2A 100.000 3962 0 0 1 3962 380747838 380743877 0.000000e+00 7317.0
1 TraesCS2A01G251600 chr2A 87.719 114 9 3 3180 3288 600519999 600520112 1.160000e-25 128.0
2 TraesCS2A01G251600 chr2D 94.390 3066 107 25 1 3047 302779980 302776961 0.000000e+00 4649.0
3 TraesCS2A01G251600 chr2D 88.793 116 13 0 2127 2242 448206761 448206876 4.130000e-30 143.0
4 TraesCS2A01G251600 chr2B 96.609 1209 41 0 1833 3041 358333618 358334826 0.000000e+00 2006.0
5 TraesCS2A01G251600 chr2B 96.162 938 29 6 869 1800 358332689 358333625 0.000000e+00 1526.0
6 TraesCS2A01G251600 chr2B 92.581 310 22 1 299 608 358331910 358332218 1.010000e-120 444.0
7 TraesCS2A01G251600 chr2B 92.075 265 18 1 1 265 358330870 358331131 1.740000e-98 370.0
8 TraesCS2A01G251600 chr2B 87.660 235 25 4 3180 3412 786405654 786405886 1.810000e-68 270.0
9 TraesCS2A01G251600 chr2B 94.262 122 6 1 602 722 358332431 358332552 6.760000e-43 185.0
10 TraesCS2A01G251600 chr2B 87.692 130 16 0 3317 3446 507967143 507967014 6.860000e-33 152.0
11 TraesCS2A01G251600 chr2B 92.632 95 4 2 731 823 358332593 358332686 2.480000e-27 134.0
12 TraesCS2A01G251600 chr2B 88.889 54 4 2 237 289 2358991 2358939 9.190000e-07 65.8
13 TraesCS2A01G251600 chr7A 92.630 787 34 10 3180 3962 689683867 689684633 0.000000e+00 1110.0
14 TraesCS2A01G251600 chr7A 88.205 195 19 3 3221 3412 609345376 609345569 3.080000e-56 230.0
15 TraesCS2A01G251600 chr7D 87.726 774 46 21 3180 3944 501837985 501838718 0.000000e+00 857.0
16 TraesCS2A01G251600 chr7D 95.349 43 1 1 250 291 460053691 460053733 2.560000e-07 67.6
17 TraesCS2A01G251600 chr7D 97.222 36 1 0 251 286 107810054 107810089 1.190000e-05 62.1
18 TraesCS2A01G251600 chr6D 85.424 295 26 13 8 286 229426025 229426318 1.390000e-74 291.0
19 TraesCS2A01G251600 chr6A 90.455 220 18 3 9 226 352660494 352660712 1.800000e-73 287.0
20 TraesCS2A01G251600 chr6A 87.368 95 5 6 3180 3272 570989835 570989746 7.000000e-18 102.0
21 TraesCS2A01G251600 chr3B 87.946 224 21 6 3222 3443 241277098 241277317 3.930000e-65 259.0
22 TraesCS2A01G251600 chr3B 78.157 293 43 17 12 286 303947858 303947569 2.450000e-37 167.0
23 TraesCS2A01G251600 chr3B 87.234 94 10 2 3180 3271 89427717 89427810 5.410000e-19 106.0
24 TraesCS2A01G251600 chr3B 81.308 107 20 0 3339 3445 750323078 750323184 1.960000e-13 87.9
25 TraesCS2A01G251600 chr3B 84.146 82 11 2 12 93 685940007 685940086 1.180000e-10 78.7
26 TraesCS2A01G251600 chr3B 91.071 56 4 1 12 67 341214118 341214172 1.530000e-09 75.0
27 TraesCS2A01G251600 chr5D 79.655 290 37 15 16 286 439419348 439419062 5.230000e-44 189.0
28 TraesCS2A01G251600 chr5D 84.375 64 8 2 3180 3241 517972288 517972225 1.190000e-05 62.1
29 TraesCS2A01G251600 chr6B 85.143 175 25 1 3270 3444 632557139 632557312 1.130000e-40 178.0
30 TraesCS2A01G251600 chr6B 81.221 213 15 8 16 226 314585251 314585440 8.870000e-32 148.0
31 TraesCS2A01G251600 chr7B 86.145 166 20 3 3267 3432 167746031 167745869 4.070000e-40 176.0
32 TraesCS2A01G251600 chr5B 87.500 104 13 0 3345 3448 289528779 289528882 1.930000e-23 121.0
33 TraesCS2A01G251600 chr4A 86.316 95 7 5 3180 3272 614679282 614679192 9.060000e-17 99.0
34 TraesCS2A01G251600 chr1D 87.500 64 6 1 223 286 40240660 40240599 5.490000e-09 73.1
35 TraesCS2A01G251600 chr5A 97.561 41 1 0 3303 3343 370043420 370043460 1.980000e-08 71.3
36 TraesCS2A01G251600 chr1B 82.222 90 9 1 3180 3269 686746717 686746635 1.980000e-08 71.3
37 TraesCS2A01G251600 chr3D 95.122 41 2 0 3303 3343 505952385 505952345 9.190000e-07 65.8
38 TraesCS2A01G251600 chr4B 81.579 76 11 3 218 290 13982090 13982015 4.280000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G251600 chr2A 380743877 380747838 3961 True 7317.0 7317 100.0000 1 3962 1 chr2A.!!$R1 3961
1 TraesCS2A01G251600 chr2D 302776961 302779980 3019 True 4649.0 4649 94.3900 1 3047 1 chr2D.!!$R1 3046
2 TraesCS2A01G251600 chr2B 358330870 358334826 3956 False 777.5 2006 94.0535 1 3041 6 chr2B.!!$F2 3040
3 TraesCS2A01G251600 chr7A 689683867 689684633 766 False 1110.0 1110 92.6300 3180 3962 1 chr7A.!!$F2 782
4 TraesCS2A01G251600 chr7D 501837985 501838718 733 False 857.0 857 87.7260 3180 3944 1 chr7D.!!$F3 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 1344 0.108615 AGGACGATGCCTTCTTGTCG 60.109 55.0 0.00 0.0 39.78 4.35 F
1596 2616 0.108615 CGAACGGCTTCCTCATCACT 60.109 55.0 0.00 0.0 0.00 3.41 F
1880 2900 0.252330 TACCGGTGATGTCAGGGGAA 60.252 55.0 19.93 0.0 0.00 3.97 F
2331 3351 1.040893 ACGAGACCACCACACACTCA 61.041 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 2886 0.035056 CCACCTTCCCCTGACATCAC 60.035 60.000 0.0 0.0 0.0 3.06 R
2904 3924 0.035630 CCCAGAACTTGAGCCTGAGG 60.036 60.000 0.0 0.0 0.0 3.86 R
2939 3959 1.078759 CAGCCCGTCGTTCTTGCTAG 61.079 60.000 0.0 0.0 0.0 3.42 R
3251 4272 1.517832 GTGATGGGAGGTGAGACGG 59.482 63.158 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.022735 TCACCTCTTCGCGGTATCTC 58.977 55.000 6.13 0.00 32.37 2.75
111 112 0.389757 GTATCTCCGGGAAGTGCTCC 59.610 60.000 0.00 0.00 44.54 4.70
119 120 2.507324 GAAGTGCTCCGTCGGCTC 60.507 66.667 6.34 0.69 0.00 4.70
137 138 2.464865 CTCCGTAGTGATGCTTACTGC 58.535 52.381 0.00 0.00 43.25 4.40
152 153 5.363868 TGCTTACTGCCATCTTGTAGTCTAT 59.636 40.000 0.00 0.00 42.00 1.98
155 156 7.661536 TTACTGCCATCTTGTAGTCTATCTT 57.338 36.000 0.00 0.00 0.00 2.40
178 182 0.391395 TCGTTCGGTGTGTGGTTGTT 60.391 50.000 0.00 0.00 0.00 2.83
181 185 2.008329 GTTCGGTGTGTGGTTGTTGTA 58.992 47.619 0.00 0.00 0.00 2.41
182 186 1.942677 TCGGTGTGTGGTTGTTGTAG 58.057 50.000 0.00 0.00 0.00 2.74
183 187 1.207570 TCGGTGTGTGGTTGTTGTAGT 59.792 47.619 0.00 0.00 0.00 2.73
184 188 2.011222 CGGTGTGTGGTTGTTGTAGTT 58.989 47.619 0.00 0.00 0.00 2.24
185 189 2.420722 CGGTGTGTGGTTGTTGTAGTTT 59.579 45.455 0.00 0.00 0.00 2.66
186 190 3.119779 CGGTGTGTGGTTGTTGTAGTTTT 60.120 43.478 0.00 0.00 0.00 2.43
273 277 3.772572 TGCTCTATATATAAAGCGGGGCA 59.227 43.478 12.35 6.50 37.57 5.36
286 290 1.202475 GCGGGGCAAAAGTCTTTTTCA 60.202 47.619 7.87 0.00 34.34 2.69
291 854 5.931724 CGGGGCAAAAGTCTTTTTCATAAAT 59.068 36.000 7.87 0.00 34.34 1.40
461 1210 8.267183 TGCTACTAATGAAAAATCAGGATCAGA 58.733 33.333 0.00 0.00 0.00 3.27
507 1256 3.456280 CTTGATGCTCTTCAGGTAGCTC 58.544 50.000 0.00 0.00 39.53 4.09
592 1341 0.462759 GGGAGGACGATGCCTTCTTG 60.463 60.000 0.00 0.00 38.73 3.02
595 1344 0.108615 AGGACGATGCCTTCTTGTCG 60.109 55.000 0.00 0.00 39.78 4.35
599 1348 1.084370 CGATGCCTTCTTGTCGGGTC 61.084 60.000 0.00 0.00 0.00 4.46
626 1595 5.116882 GGATGTACCAACTGACTAATGTCC 58.883 45.833 0.00 0.00 39.30 4.02
635 1604 6.449698 CAACTGACTAATGTCCATTGCTTTT 58.550 36.000 2.80 0.00 42.28 2.27
666 1635 0.179137 TCGTCGCCATCAGATGACAC 60.179 55.000 12.41 4.41 0.00 3.67
676 1645 1.015109 CAGATGACACTCAGCATGGC 58.985 55.000 0.00 0.00 34.77 4.40
724 1694 7.928908 TTGTCAAATCAGTAAAGTGAAATGC 57.071 32.000 0.00 0.00 0.00 3.56
747 1749 4.757692 CCCCCTATCTACTGGAATCTTCT 58.242 47.826 0.00 0.00 0.00 2.85
767 1771 8.833231 TCTTCTTCCGATTATGGTCAATTATC 57.167 34.615 0.00 0.00 0.00 1.75
790 1794 1.953642 CACACGCGTGACATGGACA 60.954 57.895 42.94 0.00 46.80 4.02
849 1854 5.879223 CGTATACATGTACTACTCCTAGGGG 59.121 48.000 7.26 7.26 0.00 4.79
854 1859 3.752596 TGTACTACTCCTAGGGGGTACT 58.247 50.000 21.85 11.99 36.25 2.73
855 1860 3.718956 TGTACTACTCCTAGGGGGTACTC 59.281 52.174 21.85 8.49 36.25 2.59
856 1861 2.142756 ACTACTCCTAGGGGGTACTCC 58.857 57.143 14.80 1.90 36.25 3.85
857 1862 2.295086 ACTACTCCTAGGGGGTACTCCT 60.295 54.545 14.80 12.16 38.36 3.69
860 1865 1.073603 CTCCTAGGGGGTACTCCTACG 59.926 61.905 12.68 8.25 35.92 3.51
861 1866 0.112025 CCTAGGGGGTACTCCTACGG 59.888 65.000 12.68 5.57 35.92 4.02
886 1891 6.349973 GTACATAGTAGTACTACGTGCACA 57.650 41.667 27.22 16.93 40.85 4.57
887 1892 5.227238 ACATAGTAGTACTACGTGCACAC 57.773 43.478 27.22 6.92 40.80 3.82
888 1893 4.696877 ACATAGTAGTACTACGTGCACACA 59.303 41.667 27.22 2.09 40.80 3.72
889 1894 3.549299 AGTAGTACTACGTGCACACAC 57.451 47.619 23.87 6.42 43.76 3.82
894 1899 2.701073 ACTACGTGCACACACTAGTC 57.299 50.000 18.64 0.00 45.10 2.59
908 1913 0.537188 CTAGTCGGTGCCAGTCCAAT 59.463 55.000 0.00 0.00 0.00 3.16
915 1920 2.511600 GCCAGTCCAATCCGGTCG 60.512 66.667 0.00 0.00 35.57 4.79
926 1931 1.392710 ATCCGGTCGTCCTCATCCAC 61.393 60.000 0.00 0.00 0.00 4.02
980 1985 6.378582 CGAGGAAAGATACAGATTAGAGAGC 58.621 44.000 0.00 0.00 0.00 4.09
982 1987 5.830991 AGGAAAGATACAGATTAGAGAGCGT 59.169 40.000 0.00 0.00 0.00 5.07
985 1990 5.940192 AGATACAGATTAGAGAGCGTCAG 57.060 43.478 0.00 0.00 0.00 3.51
1533 2553 1.879430 GACGGCGCCGCTTTACATA 60.879 57.895 46.22 0.00 44.19 2.29
1596 2616 0.108615 CGAACGGCTTCCTCATCACT 60.109 55.000 0.00 0.00 0.00 3.41
1632 2652 2.694109 GTCCTACCTTATCAACCTCGCT 59.306 50.000 0.00 0.00 0.00 4.93
1767 2787 7.222161 ACAGAAAGGTTAGTTTTGGGTAGTAG 58.778 38.462 0.00 0.00 0.00 2.57
1768 2788 7.147426 ACAGAAAGGTTAGTTTTGGGTAGTAGT 60.147 37.037 0.00 0.00 0.00 2.73
1769 2789 8.370182 CAGAAAGGTTAGTTTTGGGTAGTAGTA 58.630 37.037 0.00 0.00 0.00 1.82
1830 2850 9.810545 TTATTTCCTTGAACTAAAAAGTTGTGG 57.189 29.630 0.00 0.00 31.35 4.17
1831 2851 6.844097 TTCCTTGAACTAAAAAGTTGTGGT 57.156 33.333 0.00 0.00 31.35 4.16
1834 2854 8.350852 TCCTTGAACTAAAAAGTTGTGGTAAA 57.649 30.769 0.00 0.00 31.35 2.01
1866 2886 4.385447 TGAACGAACGAACTTAATTACCGG 59.615 41.667 0.00 0.00 0.00 5.28
1880 2900 0.252330 TACCGGTGATGTCAGGGGAA 60.252 55.000 19.93 0.00 0.00 3.97
2028 3048 2.664851 CTGACGGCGCTGGTGAAA 60.665 61.111 22.44 0.00 0.00 2.69
2154 3174 4.796495 GCCGGGTTCGCCTCCAAT 62.796 66.667 2.18 0.00 37.45 3.16
2314 3334 4.351938 TCTCCGCGGTGTTCCACG 62.352 66.667 27.15 4.72 38.78 4.94
2331 3351 1.040893 ACGAGACCACCACACACTCA 61.041 55.000 0.00 0.00 0.00 3.41
2406 3426 2.045242 TACCGGACGAGCAGCTCT 60.045 61.111 20.39 7.43 0.00 4.09
2892 3912 1.412343 GAGGAGGTGGAGAAGATGCTC 59.588 57.143 0.00 0.00 0.00 4.26
2956 3976 2.453638 GCTAGCAAGAACGACGGGC 61.454 63.158 10.63 0.00 0.00 6.13
3005 4025 2.313374 CGCGCGAACGAGACAATC 59.687 61.111 28.94 0.00 42.18 2.67
3017 4037 0.994247 AGACAATCTGTGGCCATCCA 59.006 50.000 9.72 1.25 34.75 3.41
3018 4038 1.355381 AGACAATCTGTGGCCATCCAA 59.645 47.619 9.72 0.00 45.53 3.53
3043 4063 8.575649 AGTAATTGGAATTTCGATTTGTAGGT 57.424 30.769 4.45 0.00 0.00 3.08
3047 4067 9.554395 AATTGGAATTTCGATTTGTAGGTTTTT 57.446 25.926 0.00 0.00 0.00 1.94
3071 4091 6.664428 TTTTCTTTGAGGGGAATTTGTAGG 57.336 37.500 0.00 0.00 0.00 3.18
3072 4092 3.697166 TCTTTGAGGGGAATTTGTAGGC 58.303 45.455 0.00 0.00 0.00 3.93
3073 4093 3.333680 TCTTTGAGGGGAATTTGTAGGCT 59.666 43.478 0.00 0.00 0.00 4.58
3074 4094 3.825908 TTGAGGGGAATTTGTAGGCTT 57.174 42.857 0.00 0.00 0.00 4.35
3075 4095 3.825908 TGAGGGGAATTTGTAGGCTTT 57.174 42.857 0.00 0.00 0.00 3.51
3076 4096 3.697166 TGAGGGGAATTTGTAGGCTTTC 58.303 45.455 0.00 0.00 0.00 2.62
3077 4097 3.075283 TGAGGGGAATTTGTAGGCTTTCA 59.925 43.478 0.00 0.00 0.00 2.69
3078 4098 4.086457 GAGGGGAATTTGTAGGCTTTCAA 58.914 43.478 0.00 0.00 0.00 2.69
3079 4099 4.687976 AGGGGAATTTGTAGGCTTTCAAT 58.312 39.130 0.00 0.00 0.00 2.57
3080 4100 5.837829 AGGGGAATTTGTAGGCTTTCAATA 58.162 37.500 0.00 0.00 0.00 1.90
3081 4101 5.656859 AGGGGAATTTGTAGGCTTTCAATAC 59.343 40.000 0.00 0.00 0.00 1.89
3082 4102 5.656859 GGGGAATTTGTAGGCTTTCAATACT 59.343 40.000 0.00 0.00 0.00 2.12
3083 4103 6.831868 GGGGAATTTGTAGGCTTTCAATACTA 59.168 38.462 0.00 0.00 0.00 1.82
3084 4104 7.505923 GGGGAATTTGTAGGCTTTCAATACTAT 59.494 37.037 0.00 0.00 0.00 2.12
3085 4105 9.569122 GGGAATTTGTAGGCTTTCAATACTATA 57.431 33.333 0.00 0.00 0.00 1.31
3117 4137 6.320494 TGTTACAAATAACATTTGTCGGCT 57.680 33.333 17.89 0.14 44.62 5.52
3118 4138 6.740110 TGTTACAAATAACATTTGTCGGCTT 58.260 32.000 17.89 0.00 44.62 4.35
3119 4139 7.203910 TGTTACAAATAACATTTGTCGGCTTT 58.796 30.769 17.89 0.00 44.62 3.51
3120 4140 7.380065 TGTTACAAATAACATTTGTCGGCTTTC 59.620 33.333 17.89 5.97 44.62 2.62
3121 4141 5.837437 ACAAATAACATTTGTCGGCTTTCA 58.163 33.333 10.67 0.00 38.10 2.69
3122 4142 6.276847 ACAAATAACATTTGTCGGCTTTCAA 58.723 32.000 10.67 0.00 38.10 2.69
3123 4143 6.928492 ACAAATAACATTTGTCGGCTTTCAAT 59.072 30.769 10.67 0.00 38.10 2.57
3124 4144 8.085296 ACAAATAACATTTGTCGGCTTTCAATA 58.915 29.630 10.67 0.00 38.10 1.90
3125 4145 8.920665 CAAATAACATTTGTCGGCTTTCAATAA 58.079 29.630 3.91 0.00 0.00 1.40
3126 4146 9.651913 AAATAACATTTGTCGGCTTTCAATAAT 57.348 25.926 0.00 0.00 0.00 1.28
3130 4150 9.651913 AACATTTGTCGGCTTTCAATAATATTT 57.348 25.926 0.00 0.00 0.00 1.40
3131 4151 9.086336 ACATTTGTCGGCTTTCAATAATATTTG 57.914 29.630 0.00 0.00 0.00 2.32
3132 4152 9.086336 CATTTGTCGGCTTTCAATAATATTTGT 57.914 29.630 0.00 0.00 0.00 2.83
3133 4153 8.682128 TTTGTCGGCTTTCAATAATATTTGTC 57.318 30.769 0.00 0.00 0.00 3.18
3134 4154 7.384439 TGTCGGCTTTCAATAATATTTGTCA 57.616 32.000 0.00 0.00 0.00 3.58
3135 4155 7.995289 TGTCGGCTTTCAATAATATTTGTCAT 58.005 30.769 0.00 0.00 0.00 3.06
3136 4156 7.914871 TGTCGGCTTTCAATAATATTTGTCATG 59.085 33.333 0.00 0.00 0.00 3.07
3137 4157 8.128582 GTCGGCTTTCAATAATATTTGTCATGA 58.871 33.333 0.00 0.00 0.00 3.07
3138 4158 8.681806 TCGGCTTTCAATAATATTTGTCATGAA 58.318 29.630 0.00 0.00 0.00 2.57
3139 4159 9.467258 CGGCTTTCAATAATATTTGTCATGAAT 57.533 29.630 0.00 0.00 0.00 2.57
3153 4173 9.857656 ATTTGTCATGAATAGGTCATTATCTGT 57.142 29.630 0.00 0.00 45.13 3.41
3156 4176 9.987272 TGTCATGAATAGGTCATTATCTGTAAG 57.013 33.333 0.00 0.00 45.13 2.34
3157 4177 9.988815 GTCATGAATAGGTCATTATCTGTAAGT 57.011 33.333 0.00 0.00 45.13 2.24
3160 4180 8.662781 TGAATAGGTCATTATCTGTAAGTTGC 57.337 34.615 0.00 0.00 33.76 4.17
3161 4181 8.264347 TGAATAGGTCATTATCTGTAAGTTGCA 58.736 33.333 0.00 0.00 33.76 4.08
3162 4182 9.109393 GAATAGGTCATTATCTGTAAGTTGCAA 57.891 33.333 0.00 0.00 33.76 4.08
3163 4183 6.743575 AGGTCATTATCTGTAAGTTGCAAC 57.256 37.500 22.17 22.17 33.76 4.17
3164 4184 5.351465 AGGTCATTATCTGTAAGTTGCAACG 59.649 40.000 23.21 9.37 33.76 4.10
3165 4185 5.447279 GGTCATTATCTGTAAGTTGCAACGG 60.447 44.000 23.21 6.33 33.76 4.44
3166 4186 4.634004 TCATTATCTGTAAGTTGCAACGGG 59.366 41.667 23.21 12.59 33.76 5.28
3167 4187 2.851263 ATCTGTAAGTTGCAACGGGA 57.149 45.000 23.21 16.83 33.76 5.14
3168 4188 2.623878 TCTGTAAGTTGCAACGGGAA 57.376 45.000 23.21 10.38 33.76 3.97
3169 4189 2.215196 TCTGTAAGTTGCAACGGGAAC 58.785 47.619 23.21 18.52 44.79 3.62
3170 4190 1.944024 CTGTAAGTTGCAACGGGAACA 59.056 47.619 23.21 21.46 46.62 3.18
3171 4191 2.552315 CTGTAAGTTGCAACGGGAACAT 59.448 45.455 23.21 1.43 46.62 2.71
3172 4192 2.292016 TGTAAGTTGCAACGGGAACATG 59.708 45.455 23.21 0.00 46.62 3.21
3173 4193 1.686355 AAGTTGCAACGGGAACATGA 58.314 45.000 23.21 0.00 46.62 3.07
3174 4194 1.686355 AGTTGCAACGGGAACATGAA 58.314 45.000 23.21 0.00 46.62 2.57
3175 4195 2.238521 AGTTGCAACGGGAACATGAAT 58.761 42.857 23.21 0.00 46.62 2.57
3176 4196 3.417101 AGTTGCAACGGGAACATGAATA 58.583 40.909 23.21 0.00 46.62 1.75
3177 4197 4.016444 AGTTGCAACGGGAACATGAATAT 58.984 39.130 23.21 0.00 46.62 1.28
3178 4198 4.096382 AGTTGCAACGGGAACATGAATATC 59.904 41.667 23.21 0.00 46.62 1.63
3185 4205 7.382110 CAACGGGAACATGAATATCTCTCTAT 58.618 38.462 0.00 0.00 0.00 1.98
3203 4223 6.127101 TCTCTATTCCTAATGGACGAGTTGA 58.873 40.000 0.00 0.00 43.06 3.18
3214 4234 5.400066 TGGACGAGTTGATTGAATAGTCA 57.600 39.130 0.00 0.00 0.00 3.41
3215 4235 5.977635 TGGACGAGTTGATTGAATAGTCAT 58.022 37.500 0.00 0.00 32.48 3.06
3217 4237 6.978659 TGGACGAGTTGATTGAATAGTCATAC 59.021 38.462 0.00 0.00 32.48 2.39
3266 4287 1.358152 TTTTCCGTCTCACCTCCCAT 58.642 50.000 0.00 0.00 0.00 4.00
3290 4312 2.494471 CCCTCCCACGTTAATTTTTCCC 59.506 50.000 0.00 0.00 0.00 3.97
3300 4322 7.145323 CACGTTAATTTTTCCCTTCTTCACAT 58.855 34.615 0.00 0.00 0.00 3.21
3309 4331 7.425224 TTTCCCTTCTTCACATTTAAAACCA 57.575 32.000 0.00 0.00 0.00 3.67
3342 4364 8.358148 GTCTGATACTCCTTCCATTTATTCGTA 58.642 37.037 0.00 0.00 0.00 3.43
3448 4470 4.792068 TCACCTTTCAAACAGATCACCTT 58.208 39.130 0.00 0.00 0.00 3.50
3449 4471 5.200483 TCACCTTTCAAACAGATCACCTTT 58.800 37.500 0.00 0.00 0.00 3.11
3450 4472 5.299279 TCACCTTTCAAACAGATCACCTTTC 59.701 40.000 0.00 0.00 0.00 2.62
3451 4473 5.067674 CACCTTTCAAACAGATCACCTTTCA 59.932 40.000 0.00 0.00 0.00 2.69
3452 4474 5.656416 ACCTTTCAAACAGATCACCTTTCAA 59.344 36.000 0.00 0.00 0.00 2.69
3453 4475 6.154363 ACCTTTCAAACAGATCACCTTTCAAA 59.846 34.615 0.00 0.00 0.00 2.69
3454 4476 6.476706 CCTTTCAAACAGATCACCTTTCAAAC 59.523 38.462 0.00 0.00 0.00 2.93
3455 4477 6.522625 TTCAAACAGATCACCTTTCAAACA 57.477 33.333 0.00 0.00 0.00 2.83
3456 4478 6.135290 TCAAACAGATCACCTTTCAAACAG 57.865 37.500 0.00 0.00 0.00 3.16
3457 4479 5.885352 TCAAACAGATCACCTTTCAAACAGA 59.115 36.000 0.00 0.00 0.00 3.41
3458 4480 6.547141 TCAAACAGATCACCTTTCAAACAGAT 59.453 34.615 0.00 0.00 0.00 2.90
3459 4481 6.566197 AACAGATCACCTTTCAAACAGATC 57.434 37.500 0.00 0.00 33.79 2.75
3460 4482 5.624159 ACAGATCACCTTTCAAACAGATCA 58.376 37.500 0.00 0.00 35.52 2.92
3461 4483 5.471456 ACAGATCACCTTTCAAACAGATCAC 59.529 40.000 0.00 0.00 35.52 3.06
3462 4484 5.006386 AGATCACCTTTCAAACAGATCACC 58.994 41.667 0.00 0.00 35.52 4.02
3463 4485 4.437682 TCACCTTTCAAACAGATCACCT 57.562 40.909 0.00 0.00 0.00 4.00
3575 4598 3.687102 CCACCTCCCACGTACGCA 61.687 66.667 16.72 0.00 0.00 5.24
3585 4608 2.205152 ACGTACGCAGTCCCACCTT 61.205 57.895 16.72 0.00 43.93 3.50
3688 4711 0.952280 CTCGTTAGGCTCGCCTATCA 59.048 55.000 17.70 2.01 46.84 2.15
3699 4722 1.205179 TCGCCTATCAAACGCTACCAA 59.795 47.619 0.00 0.00 0.00 3.67
3751 4775 1.283613 ACCGATGGGCAAATAACCAGA 59.716 47.619 0.00 0.00 40.67 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 1.298413 CATCACTACGGAGCCGACG 60.298 63.158 16.83 8.16 42.83 5.12
137 138 6.038825 ACGACTCAAGATAGACTACAAGATGG 59.961 42.308 0.00 0.00 0.00 3.51
152 153 0.742505 ACACACCGAACGACTCAAGA 59.257 50.000 0.00 0.00 0.00 3.02
155 156 1.066752 CCACACACCGAACGACTCA 59.933 57.895 0.00 0.00 0.00 3.41
178 182 5.761234 AGATACAAAGGTGCGAAAAACTACA 59.239 36.000 0.00 0.00 0.00 2.74
181 185 4.023193 CCAGATACAAAGGTGCGAAAAACT 60.023 41.667 0.00 0.00 0.00 2.66
182 186 4.226761 CCAGATACAAAGGTGCGAAAAAC 58.773 43.478 0.00 0.00 0.00 2.43
183 187 3.305064 GCCAGATACAAAGGTGCGAAAAA 60.305 43.478 0.00 0.00 0.00 1.94
184 188 2.227865 GCCAGATACAAAGGTGCGAAAA 59.772 45.455 0.00 0.00 0.00 2.29
185 189 1.810151 GCCAGATACAAAGGTGCGAAA 59.190 47.619 0.00 0.00 0.00 3.46
186 190 1.448985 GCCAGATACAAAGGTGCGAA 58.551 50.000 0.00 0.00 0.00 4.70
444 1193 7.307694 CACGATTTTCTGATCCTGATTTTTCA 58.692 34.615 0.00 0.00 0.00 2.69
461 1210 5.705609 ATTCCACTAGTTTGCACGATTTT 57.294 34.783 0.00 0.00 0.00 1.82
507 1256 2.093306 TACCTGTCCATTTCAGCACG 57.907 50.000 0.00 0.00 0.00 5.34
571 1320 0.261991 AGAAGGCATCGTCCTCCCTA 59.738 55.000 0.00 0.00 34.82 3.53
592 1341 0.459063 GGTACATCCAACGACCCGAC 60.459 60.000 0.00 0.00 35.97 4.79
626 1595 5.066505 ACGATTAGGAGGCTAAAAAGCAATG 59.933 40.000 0.00 0.00 36.33 2.82
635 1604 0.672342 GGCGACGATTAGGAGGCTAA 59.328 55.000 0.00 0.00 0.00 3.09
747 1749 5.860611 ACGGATAATTGACCATAATCGGAA 58.139 37.500 0.00 0.00 0.00 4.30
767 1771 4.934942 TGTCACGCGTGTGGACGG 62.935 66.667 35.74 11.72 46.20 4.79
860 1865 5.755375 TGCACGTAGTACTACTATGTACTCC 59.245 44.000 26.36 13.46 46.14 3.85
861 1866 6.256539 TGTGCACGTAGTACTACTATGTACTC 59.743 42.308 31.58 20.00 46.14 2.59
863 1868 6.183360 TGTGTGCACGTAGTACTACTATGTAC 60.183 42.308 28.76 28.76 46.14 2.90
866 1871 5.026462 GTGTGTGCACGTAGTACTACTATG 58.974 45.833 26.36 23.59 41.61 2.23
867 1872 5.227238 GTGTGTGCACGTAGTACTACTAT 57.773 43.478 26.36 14.39 41.61 2.12
868 1873 4.668576 GTGTGTGCACGTAGTACTACTA 57.331 45.455 26.36 10.66 41.61 1.82
869 1874 3.549299 GTGTGTGCACGTAGTACTACT 57.451 47.619 26.36 13.51 41.61 2.57
880 1885 2.517598 CACCGACTAGTGTGTGCAC 58.482 57.895 10.75 10.75 45.57 4.57
882 1887 3.550656 GCACCGACTAGTGTGTGC 58.449 61.111 23.15 23.15 46.09 4.57
883 1888 0.667487 CTGGCACCGACTAGTGTGTG 60.667 60.000 14.27 14.27 40.04 3.82
884 1889 1.113517 ACTGGCACCGACTAGTGTGT 61.114 55.000 13.23 2.24 40.04 3.72
885 1890 0.388649 GACTGGCACCGACTAGTGTG 60.389 60.000 0.00 4.35 40.04 3.82
886 1891 1.533469 GGACTGGCACCGACTAGTGT 61.533 60.000 0.00 0.00 40.04 3.55
887 1892 1.215647 GGACTGGCACCGACTAGTG 59.784 63.158 0.00 0.00 40.88 2.74
888 1893 0.830444 TTGGACTGGCACCGACTAGT 60.830 55.000 0.00 0.00 33.56 2.57
889 1894 0.537188 ATTGGACTGGCACCGACTAG 59.463 55.000 0.00 0.00 0.00 2.57
894 1899 2.819595 CGGATTGGACTGGCACCG 60.820 66.667 0.00 0.00 34.77 4.94
908 1913 2.050350 GTGGATGAGGACGACCGGA 61.050 63.158 9.46 0.00 41.83 5.14
915 1920 0.179081 GCTTACGGGTGGATGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
926 1931 1.334869 GGAATGCTCAATGCTTACGGG 59.665 52.381 0.00 0.00 43.37 5.28
1011 2019 4.351938 CCGTCGAACCCGTGAGCA 62.352 66.667 0.00 0.00 37.05 4.26
1296 2316 2.098607 CACGATCATTTCCTGCAGCAAT 59.901 45.455 8.66 5.85 0.00 3.56
1578 2598 1.363744 CAGTGATGAGGAAGCCGTTC 58.636 55.000 0.00 0.00 0.00 3.95
1596 2616 2.281484 GACAAGAACTGGCCGCCA 60.281 61.111 12.67 12.67 0.00 5.69
1689 2709 1.116308 TGAGGACGAACTGGAACACA 58.884 50.000 0.00 0.00 0.00 3.72
1804 2824 9.810545 CCACAACTTTTTAGTTCAAGGAAATAA 57.189 29.630 0.00 0.00 31.72 1.40
1805 2825 8.973182 ACCACAACTTTTTAGTTCAAGGAAATA 58.027 29.630 0.00 0.00 0.00 1.40
1806 2826 7.847096 ACCACAACTTTTTAGTTCAAGGAAAT 58.153 30.769 0.00 0.00 0.00 2.17
1807 2827 7.234661 ACCACAACTTTTTAGTTCAAGGAAA 57.765 32.000 0.00 0.00 0.00 3.13
1808 2828 6.844097 ACCACAACTTTTTAGTTCAAGGAA 57.156 33.333 0.00 0.00 0.00 3.36
1809 2829 7.941431 TTACCACAACTTTTTAGTTCAAGGA 57.059 32.000 0.00 0.00 0.00 3.36
1810 2830 9.244799 GATTTACCACAACTTTTTAGTTCAAGG 57.755 33.333 0.00 0.00 0.00 3.61
1830 2850 8.219105 AGTTCGTTCGTTCATGTAAAGATTTAC 58.781 33.333 8.25 8.25 42.51 2.01
1831 2851 8.301730 AGTTCGTTCGTTCATGTAAAGATTTA 57.698 30.769 0.00 0.00 0.00 1.40
1834 2854 6.780706 AAGTTCGTTCGTTCATGTAAAGAT 57.219 33.333 0.00 0.00 0.00 2.40
1866 2886 0.035056 CCACCTTCCCCTGACATCAC 60.035 60.000 0.00 0.00 0.00 3.06
1880 2900 2.297129 GCCTCTGCTTCCTCCACCT 61.297 63.158 0.00 0.00 33.53 4.00
2314 3334 0.249911 GGTGAGTGTGTGGTGGTCTC 60.250 60.000 0.00 0.00 0.00 3.36
2829 3849 2.088763 CACGCAGACGAGCACGAAT 61.089 57.895 11.40 0.00 43.93 3.34
2892 3912 2.492090 CTGAGGTCCCGCTTCTCG 59.508 66.667 0.00 0.00 38.08 4.04
2904 3924 0.035630 CCCAGAACTTGAGCCTGAGG 60.036 60.000 0.00 0.00 0.00 3.86
2939 3959 1.078759 CAGCCCGTCGTTCTTGCTAG 61.079 60.000 0.00 0.00 0.00 3.42
2940 3960 1.080093 CAGCCCGTCGTTCTTGCTA 60.080 57.895 0.00 0.00 0.00 3.49
2956 3976 2.461695 AGGTAGGGATGACACTCACAG 58.538 52.381 0.00 0.00 0.00 3.66
3005 4025 3.788333 CAATTACTTGGATGGCCACAG 57.212 47.619 8.16 4.32 45.94 3.66
3017 4037 9.020731 ACCTACAAATCGAAATTCCAATTACTT 57.979 29.630 0.00 0.00 0.00 2.24
3018 4038 8.575649 ACCTACAAATCGAAATTCCAATTACT 57.424 30.769 0.00 0.00 0.00 2.24
3047 4067 6.463755 GCCTACAAATTCCCCTCAAAGAAAAA 60.464 38.462 0.00 0.00 0.00 1.94
3048 4068 5.011635 GCCTACAAATTCCCCTCAAAGAAAA 59.988 40.000 0.00 0.00 0.00 2.29
3049 4069 4.526650 GCCTACAAATTCCCCTCAAAGAAA 59.473 41.667 0.00 0.00 0.00 2.52
3050 4070 4.086457 GCCTACAAATTCCCCTCAAAGAA 58.914 43.478 0.00 0.00 0.00 2.52
3051 4071 3.333680 AGCCTACAAATTCCCCTCAAAGA 59.666 43.478 0.00 0.00 0.00 2.52
3052 4072 3.701664 AGCCTACAAATTCCCCTCAAAG 58.298 45.455 0.00 0.00 0.00 2.77
3053 4073 3.825908 AGCCTACAAATTCCCCTCAAA 57.174 42.857 0.00 0.00 0.00 2.69
3054 4074 3.825908 AAGCCTACAAATTCCCCTCAA 57.174 42.857 0.00 0.00 0.00 3.02
3055 4075 3.075283 TGAAAGCCTACAAATTCCCCTCA 59.925 43.478 0.00 0.00 0.00 3.86
3056 4076 3.697166 TGAAAGCCTACAAATTCCCCTC 58.303 45.455 0.00 0.00 0.00 4.30
3057 4077 3.825908 TGAAAGCCTACAAATTCCCCT 57.174 42.857 0.00 0.00 0.00 4.79
3058 4078 5.656859 AGTATTGAAAGCCTACAAATTCCCC 59.343 40.000 0.00 0.00 0.00 4.81
3059 4079 6.775594 AGTATTGAAAGCCTACAAATTCCC 57.224 37.500 0.00 0.00 0.00 3.97
3090 4110 9.938670 GCCGACAAATGTTATTTGTAACATATA 57.061 29.630 17.08 0.00 46.47 0.86
3091 4111 8.682710 AGCCGACAAATGTTATTTGTAACATAT 58.317 29.630 17.08 4.16 46.47 1.78
3092 4112 8.046294 AGCCGACAAATGTTATTTGTAACATA 57.954 30.769 17.08 0.00 46.47 2.29
3094 4114 6.320494 AGCCGACAAATGTTATTTGTAACA 57.680 33.333 17.08 0.00 42.11 2.41
3095 4115 7.380065 TGAAAGCCGACAAATGTTATTTGTAAC 59.620 33.333 17.08 10.93 42.11 2.50
3096 4116 7.426410 TGAAAGCCGACAAATGTTATTTGTAA 58.574 30.769 17.08 0.00 42.11 2.41
3097 4117 6.971602 TGAAAGCCGACAAATGTTATTTGTA 58.028 32.000 17.08 0.53 42.11 2.41
3098 4118 5.837437 TGAAAGCCGACAAATGTTATTTGT 58.163 33.333 17.08 17.08 44.43 2.83
3099 4119 6.761731 TTGAAAGCCGACAAATGTTATTTG 57.238 33.333 11.55 11.55 35.64 2.32
3100 4120 9.651913 ATTATTGAAAGCCGACAAATGTTATTT 57.348 25.926 0.00 0.00 0.00 1.40
3104 4124 9.651913 AAATATTATTGAAAGCCGACAAATGTT 57.348 25.926 0.00 0.00 0.00 2.71
3105 4125 9.086336 CAAATATTATTGAAAGCCGACAAATGT 57.914 29.630 0.00 0.00 31.84 2.71
3106 4126 9.086336 ACAAATATTATTGAAAGCCGACAAATG 57.914 29.630 0.00 0.00 34.38 2.32
3107 4127 9.301153 GACAAATATTATTGAAAGCCGACAAAT 57.699 29.630 0.00 0.00 34.38 2.32
3108 4128 8.300286 TGACAAATATTATTGAAAGCCGACAAA 58.700 29.630 0.00 0.00 34.38 2.83
3109 4129 7.821652 TGACAAATATTATTGAAAGCCGACAA 58.178 30.769 0.00 0.00 34.38 3.18
3110 4130 7.384439 TGACAAATATTATTGAAAGCCGACA 57.616 32.000 0.00 0.00 34.38 4.35
3111 4131 8.128582 TCATGACAAATATTATTGAAAGCCGAC 58.871 33.333 0.00 0.00 34.38 4.79
3112 4132 8.219546 TCATGACAAATATTATTGAAAGCCGA 57.780 30.769 0.00 0.00 34.38 5.54
3113 4133 8.854979 TTCATGACAAATATTATTGAAAGCCG 57.145 30.769 0.00 0.00 34.38 5.52
3127 4147 9.857656 ACAGATAATGACCTATTCATGACAAAT 57.142 29.630 0.00 0.00 44.86 2.32
3130 4150 9.987272 CTTACAGATAATGACCTATTCATGACA 57.013 33.333 0.00 0.00 44.86 3.58
3131 4151 9.988815 ACTTACAGATAATGACCTATTCATGAC 57.011 33.333 0.00 0.00 44.86 3.06
3135 4155 8.264347 TGCAACTTACAGATAATGACCTATTCA 58.736 33.333 0.00 0.00 39.11 2.57
3136 4156 8.662781 TGCAACTTACAGATAATGACCTATTC 57.337 34.615 0.00 0.00 0.00 1.75
3137 4157 8.893727 GTTGCAACTTACAGATAATGACCTATT 58.106 33.333 22.36 0.00 0.00 1.73
3138 4158 7.224753 CGTTGCAACTTACAGATAATGACCTAT 59.775 37.037 26.09 0.00 0.00 2.57
3139 4159 6.533723 CGTTGCAACTTACAGATAATGACCTA 59.466 38.462 26.09 0.00 0.00 3.08
3140 4160 5.351465 CGTTGCAACTTACAGATAATGACCT 59.649 40.000 26.09 0.00 0.00 3.85
3141 4161 5.447279 CCGTTGCAACTTACAGATAATGACC 60.447 44.000 26.09 0.00 0.00 4.02
3142 4162 5.447279 CCCGTTGCAACTTACAGATAATGAC 60.447 44.000 26.09 0.00 0.00 3.06
3143 4163 4.634004 CCCGTTGCAACTTACAGATAATGA 59.366 41.667 26.09 0.00 0.00 2.57
3144 4164 4.634004 TCCCGTTGCAACTTACAGATAATG 59.366 41.667 26.09 6.84 0.00 1.90
3145 4165 4.839121 TCCCGTTGCAACTTACAGATAAT 58.161 39.130 26.09 0.00 0.00 1.28
3146 4166 4.274602 TCCCGTTGCAACTTACAGATAA 57.725 40.909 26.09 0.17 0.00 1.75
3147 4167 3.965379 TCCCGTTGCAACTTACAGATA 57.035 42.857 26.09 1.66 0.00 1.98
3148 4168 2.812011 GTTCCCGTTGCAACTTACAGAT 59.188 45.455 26.09 0.00 0.00 2.90
3149 4169 2.215196 GTTCCCGTTGCAACTTACAGA 58.785 47.619 26.09 12.68 0.00 3.41
3150 4170 1.944024 TGTTCCCGTTGCAACTTACAG 59.056 47.619 26.09 10.86 0.00 2.74
3151 4171 2.039818 TGTTCCCGTTGCAACTTACA 57.960 45.000 26.09 19.49 0.00 2.41
3152 4172 2.550606 TCATGTTCCCGTTGCAACTTAC 59.449 45.455 26.09 17.46 0.00 2.34
3153 4173 2.852449 TCATGTTCCCGTTGCAACTTA 58.148 42.857 26.09 9.40 0.00 2.24
3154 4174 1.686355 TCATGTTCCCGTTGCAACTT 58.314 45.000 26.09 0.00 0.00 2.66
3155 4175 1.686355 TTCATGTTCCCGTTGCAACT 58.314 45.000 26.09 3.66 0.00 3.16
3156 4176 2.723124 ATTCATGTTCCCGTTGCAAC 57.277 45.000 19.89 19.89 0.00 4.17
3157 4177 4.269183 AGATATTCATGTTCCCGTTGCAA 58.731 39.130 0.00 0.00 0.00 4.08
3158 4178 3.876914 GAGATATTCATGTTCCCGTTGCA 59.123 43.478 0.00 0.00 0.00 4.08
3159 4179 4.130118 AGAGATATTCATGTTCCCGTTGC 58.870 43.478 0.00 0.00 0.00 4.17
3160 4180 5.605534 AGAGAGATATTCATGTTCCCGTTG 58.394 41.667 0.00 0.00 0.00 4.10
3161 4181 5.878406 AGAGAGATATTCATGTTCCCGTT 57.122 39.130 0.00 0.00 0.00 4.44
3162 4182 7.310113 GGAATAGAGAGATATTCATGTTCCCGT 60.310 40.741 8.31 0.00 41.82 5.28
3163 4183 7.038659 GGAATAGAGAGATATTCATGTTCCCG 58.961 42.308 8.31 0.00 41.82 5.14
3164 4184 8.144862 AGGAATAGAGAGATATTCATGTTCCC 57.855 38.462 8.31 0.00 41.82 3.97
3203 4223 8.830580 CAGACGAAAATGGTATGACTATTCAAT 58.169 33.333 0.00 0.00 34.61 2.57
3251 4272 1.517832 GTGATGGGAGGTGAGACGG 59.482 63.158 0.00 0.00 0.00 4.79
3266 4287 3.512219 AAAATTAACGTGGGAGGGTGA 57.488 42.857 0.00 0.00 0.00 4.02
3290 4312 8.479280 CGTGATTTGGTTTTAAATGTGAAGAAG 58.521 33.333 0.00 0.00 30.78 2.85
3300 4322 8.385898 AGTATCAGACGTGATTTGGTTTTAAA 57.614 30.769 0.00 0.00 40.84 1.52
3309 4331 4.466370 TGGAAGGAGTATCAGACGTGATTT 59.534 41.667 0.00 0.00 40.84 2.17
3342 4364 3.290948 TCAACACCTACCAAAGCAAGT 57.709 42.857 0.00 0.00 0.00 3.16
3433 4455 5.885352 TCTGTTTGAAAGGTGATCTGTTTGA 59.115 36.000 0.00 0.00 0.00 2.69
3448 4470 3.251484 AGAGGGAGGTGATCTGTTTGAA 58.749 45.455 0.00 0.00 0.00 2.69
3449 4471 2.907892 AGAGGGAGGTGATCTGTTTGA 58.092 47.619 0.00 0.00 0.00 2.69
3450 4472 3.710209 AAGAGGGAGGTGATCTGTTTG 57.290 47.619 0.00 0.00 0.00 2.93
3451 4473 3.652869 TCAAAGAGGGAGGTGATCTGTTT 59.347 43.478 0.00 0.00 0.00 2.83
3452 4474 3.251484 TCAAAGAGGGAGGTGATCTGTT 58.749 45.455 0.00 0.00 0.00 3.16
3453 4475 2.907892 TCAAAGAGGGAGGTGATCTGT 58.092 47.619 0.00 0.00 0.00 3.41
3454 4476 4.500499 AATCAAAGAGGGAGGTGATCTG 57.500 45.455 0.00 0.00 30.45 2.90
3455 4477 6.838401 ATAAATCAAAGAGGGAGGTGATCT 57.162 37.500 0.00 0.00 30.45 2.75
3456 4478 7.888250 AAATAAATCAAAGAGGGAGGTGATC 57.112 36.000 0.00 0.00 30.45 2.92
3457 4479 8.670521 AAAAATAAATCAAAGAGGGAGGTGAT 57.329 30.769 0.00 0.00 32.09 3.06
3483 4505 2.858644 AGTATGAAAGGGATGGGTGGA 58.141 47.619 0.00 0.00 0.00 4.02
3575 4598 1.779061 ATCGTTGGCAAGGTGGGACT 61.779 55.000 18.35 0.00 0.00 3.85
3601 4624 3.306919 CCACCAATTCTTTGTGGGAATGG 60.307 47.826 0.00 0.00 39.39 3.16
3684 4707 3.637911 ATGGGTTGGTAGCGTTTGATA 57.362 42.857 0.00 0.00 0.00 2.15
3688 4711 2.279935 TCAATGGGTTGGTAGCGTTT 57.720 45.000 0.00 0.00 35.99 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.