Multiple sequence alignment - TraesCS2A01G251400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G251400 chr2A 100.000 4667 0 0 1 4667 379737615 379732949 0.000000e+00 8619.0
1 TraesCS2A01G251400 chr2A 97.368 38 1 0 919 956 136117234 136117197 1.080000e-06 65.8
2 TraesCS2A01G251400 chr2D 94.243 1928 80 18 1009 2923 302427614 302425705 0.000000e+00 2916.0
3 TraesCS2A01G251400 chr2D 89.580 1689 114 28 3025 4666 302425355 302423682 0.000000e+00 2087.0
4 TraesCS2A01G251400 chr2B 92.080 1957 94 31 1009 2923 358050051 358048114 0.000000e+00 2699.0
5 TraesCS2A01G251400 chr2B 87.004 1108 87 27 3025 4099 358047930 358046847 0.000000e+00 1195.0
6 TraesCS2A01G251400 chr2B 86.083 503 44 13 4185 4665 358046734 358046236 6.920000e-143 518.0
7 TraesCS2A01G251400 chr4D 85.938 768 97 9 3 764 338009524 338008762 0.000000e+00 809.0
8 TraesCS2A01G251400 chr4D 86.164 636 83 5 1 634 501505739 501505107 0.000000e+00 682.0
9 TraesCS2A01G251400 chr3D 85.233 772 100 12 3 770 294043053 294043814 0.000000e+00 782.0
10 TraesCS2A01G251400 chr3A 85.013 774 103 10 3 766 388795002 388795772 0.000000e+00 774.0
11 TraesCS2A01G251400 chr5D 85.933 718 85 12 1 711 55931901 55932609 0.000000e+00 752.0
12 TraesCS2A01G251400 chr5D 83.696 184 29 1 2650 2832 40946320 40946503 6.210000e-39 172.0
13 TraesCS2A01G251400 chr5B 84.224 786 103 13 1 773 428142778 428142001 0.000000e+00 745.0
14 TraesCS2A01G251400 chr6A 85.714 679 89 7 3 680 486013929 486014600 0.000000e+00 710.0
15 TraesCS2A01G251400 chr4A 83.227 781 109 14 3 772 296333159 296332390 0.000000e+00 697.0
16 TraesCS2A01G251400 chr6B 82.028 779 127 8 1 770 136943505 136944279 0.000000e+00 651.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G251400 chr2A 379732949 379737615 4666 True 8619.000000 8619 100.0000 1 4667 1 chr2A.!!$R2 4666
1 TraesCS2A01G251400 chr2D 302423682 302427614 3932 True 2501.500000 2916 91.9115 1009 4666 2 chr2D.!!$R1 3657
2 TraesCS2A01G251400 chr2B 358046236 358050051 3815 True 1470.666667 2699 88.3890 1009 4665 3 chr2B.!!$R1 3656
3 TraesCS2A01G251400 chr4D 338008762 338009524 762 True 809.000000 809 85.9380 3 764 1 chr4D.!!$R1 761
4 TraesCS2A01G251400 chr4D 501505107 501505739 632 True 682.000000 682 86.1640 1 634 1 chr4D.!!$R2 633
5 TraesCS2A01G251400 chr3D 294043053 294043814 761 False 782.000000 782 85.2330 3 770 1 chr3D.!!$F1 767
6 TraesCS2A01G251400 chr3A 388795002 388795772 770 False 774.000000 774 85.0130 3 766 1 chr3A.!!$F1 763
7 TraesCS2A01G251400 chr5D 55931901 55932609 708 False 752.000000 752 85.9330 1 711 1 chr5D.!!$F2 710
8 TraesCS2A01G251400 chr5B 428142001 428142778 777 True 745.000000 745 84.2240 1 773 1 chr5B.!!$R1 772
9 TraesCS2A01G251400 chr6A 486013929 486014600 671 False 710.000000 710 85.7140 3 680 1 chr6A.!!$F1 677
10 TraesCS2A01G251400 chr4A 296332390 296333159 769 True 697.000000 697 83.2270 3 772 1 chr4A.!!$R1 769
11 TraesCS2A01G251400 chr6B 136943505 136944279 774 False 651.000000 651 82.0280 1 770 1 chr6B.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 128 0.035152 TCGGCGTAGAGAAGGGTGTA 60.035 55.0 6.85 0.0 0.00 2.90 F
778 828 0.386113 TTTTGGGACGGAAAAAGCGG 59.614 50.0 0.00 0.0 0.00 5.52 F
2340 2410 0.036732 TTGGTTGCCCAGCAGAGTAG 59.963 55.0 0.00 0.0 43.15 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1105 1158 0.179234 GGAGCAGAAGAACCCTAGGC 59.821 60.0 2.05 0.0 0.00 3.93 R
2424 2511 0.036388 GGAGGACGCAATGACTTGGA 60.036 55.0 0.00 0.0 32.72 3.53 R
4167 4578 0.183492 AGGAAGAAGCAGTTGTGGCA 59.817 50.0 0.00 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 4.331168 CGGCAAAATTTGTGAGGTTTGAAA 59.669 37.500 7.60 0.00 33.70 2.69
91 93 2.912771 TGTGAGGTTTGAAAAGAGCGA 58.087 42.857 0.00 0.00 0.00 4.93
93 95 3.250762 TGTGAGGTTTGAAAAGAGCGATG 59.749 43.478 0.00 0.00 0.00 3.84
125 128 0.035152 TCGGCGTAGAGAAGGGTGTA 60.035 55.000 6.85 0.00 0.00 2.90
153 158 1.992557 TCCCTATTGTGGTTCAAGGCT 59.007 47.619 0.00 0.00 39.55 4.58
203 208 2.841881 ACCGAGGCCACTTCCTATTAAA 59.158 45.455 5.01 0.00 36.38 1.52
242 247 2.032981 CAACCGCCACAAGCTCTTT 58.967 52.632 0.00 0.00 40.39 2.52
253 258 5.426504 CCACAAGCTCTTTATCATCTGAGT 58.573 41.667 0.00 0.00 0.00 3.41
277 282 4.035558 ACGAATCATCCGATGAACAAATGG 59.964 41.667 14.99 3.93 43.50 3.16
300 305 5.909610 GGAGTTGTGAAAGAAAAACTCATCG 59.090 40.000 14.35 0.00 46.67 3.84
326 331 2.602257 TCCATGATACCTTGTGAGCG 57.398 50.000 0.00 0.00 0.00 5.03
347 353 1.966451 GGGTCGAACACCTTGCAGG 60.966 63.158 1.31 1.16 45.95 4.85
383 389 1.726853 CCGGAAAGAGCAAGTCGATT 58.273 50.000 0.00 0.00 0.00 3.34
543 554 3.337301 AAAAATTGTACCGAAACGCGT 57.663 38.095 5.58 5.58 38.67 6.01
593 606 0.692756 TGGGGCGGATGACCTTGATA 60.693 55.000 0.00 0.00 45.75 2.15
641 654 4.424711 GGTGGCGATGGCAGGGAA 62.425 66.667 1.01 0.00 42.47 3.97
672 721 3.491342 AGAAAGGGAAGAGAAAAGTGGC 58.509 45.455 0.00 0.00 0.00 5.01
674 723 3.602205 AAGGGAAGAGAAAAGTGGCTT 57.398 42.857 0.00 0.00 0.00 4.35
680 730 3.297134 AGAGAAAAGTGGCTTTGTCCA 57.703 42.857 0.00 0.00 33.64 4.02
741 791 1.491127 CTCGCGCATGTTTGTTCGA 59.509 52.632 8.75 0.00 0.00 3.71
743 793 1.083080 CGCGCATGTTTGTTCGACA 60.083 52.632 8.75 0.00 0.00 4.35
759 809 1.805428 GACAGCAAACACGGCCCAAT 61.805 55.000 0.00 0.00 0.00 3.16
776 826 2.805671 CCAATTTTGGGACGGAAAAAGC 59.194 45.455 1.14 0.00 44.70 3.51
777 827 2.432206 ATTTTGGGACGGAAAAAGCG 57.568 45.000 0.00 0.00 0.00 4.68
778 828 0.386113 TTTTGGGACGGAAAAAGCGG 59.614 50.000 0.00 0.00 0.00 5.52
779 829 0.465824 TTTGGGACGGAAAAAGCGGA 60.466 50.000 0.00 0.00 0.00 5.54
780 830 1.167781 TTGGGACGGAAAAAGCGGAC 61.168 55.000 0.00 0.00 0.00 4.79
781 831 2.674084 GGGACGGAAAAAGCGGACG 61.674 63.158 0.00 0.00 0.00 4.79
782 832 1.665599 GGACGGAAAAAGCGGACGA 60.666 57.895 0.00 0.00 0.00 4.20
783 833 1.223417 GGACGGAAAAAGCGGACGAA 61.223 55.000 0.00 0.00 0.00 3.85
784 834 0.582960 GACGGAAAAAGCGGACGAAA 59.417 50.000 0.00 0.00 0.00 3.46
785 835 1.003652 GACGGAAAAAGCGGACGAAAA 60.004 47.619 0.00 0.00 0.00 2.29
786 836 1.401199 ACGGAAAAAGCGGACGAAAAA 59.599 42.857 0.00 0.00 0.00 1.94
787 837 2.033675 ACGGAAAAAGCGGACGAAAAAT 59.966 40.909 0.00 0.00 0.00 1.82
788 838 3.250521 ACGGAAAAAGCGGACGAAAAATA 59.749 39.130 0.00 0.00 0.00 1.40
789 839 4.220572 CGGAAAAAGCGGACGAAAAATAA 58.779 39.130 0.00 0.00 0.00 1.40
790 840 4.676018 CGGAAAAAGCGGACGAAAAATAAA 59.324 37.500 0.00 0.00 0.00 1.40
791 841 5.386627 CGGAAAAAGCGGACGAAAAATAAAC 60.387 40.000 0.00 0.00 0.00 2.01
792 842 5.386627 GGAAAAAGCGGACGAAAAATAAACG 60.387 40.000 0.00 0.00 0.00 3.60
793 843 4.471157 AAAGCGGACGAAAAATAAACGA 57.529 36.364 0.00 0.00 0.00 3.85
794 844 3.444618 AGCGGACGAAAAATAAACGAC 57.555 42.857 0.00 0.00 0.00 4.34
795 845 2.152693 GCGGACGAAAAATAAACGACG 58.847 47.619 0.00 0.00 35.59 5.12
796 846 2.749940 CGGACGAAAAATAAACGACGG 58.250 47.619 0.00 0.00 0.00 4.79
797 847 2.155539 CGGACGAAAAATAAACGACGGT 59.844 45.455 0.00 0.00 0.00 4.83
798 848 3.718898 CGGACGAAAAATAAACGACGGTC 60.719 47.826 0.00 0.00 0.00 4.79
799 849 3.423515 GGACGAAAAATAAACGACGGTCC 60.424 47.826 1.91 0.00 0.00 4.46
800 850 3.129871 ACGAAAAATAAACGACGGTCCA 58.870 40.909 1.91 0.00 0.00 4.02
801 851 3.059665 ACGAAAAATAAACGACGGTCCAC 60.060 43.478 1.91 0.00 0.00 4.02
814 864 3.642503 TCCACGGCCGGACCATTT 61.643 61.111 31.76 2.42 39.03 2.32
815 865 2.269562 CCACGGCCGGACCATTTA 59.730 61.111 31.76 0.00 39.03 1.40
816 866 1.817941 CCACGGCCGGACCATTTAG 60.818 63.158 31.76 6.95 39.03 1.85
817 867 1.817941 CACGGCCGGACCATTTAGG 60.818 63.158 31.76 0.00 45.67 2.69
818 868 2.203153 CGGCCGGACCATTTAGGG 60.203 66.667 20.10 0.00 43.89 3.53
819 869 3.004090 GGCCGGACCATTTAGGGT 58.996 61.111 5.05 0.00 46.02 4.34
825 875 2.510691 ACCATTTAGGGTCGCGCG 60.511 61.111 26.76 26.76 43.89 6.86
826 876 2.510691 CCATTTAGGGTCGCGCGT 60.511 61.111 30.98 13.33 0.00 6.01
827 877 2.104253 CCATTTAGGGTCGCGCGTT 61.104 57.895 30.98 15.99 0.00 4.84
828 878 1.060308 CATTTAGGGTCGCGCGTTG 59.940 57.895 30.98 11.28 0.00 4.10
829 879 2.104253 ATTTAGGGTCGCGCGTTGG 61.104 57.895 30.98 0.61 0.00 3.77
830 880 2.510064 ATTTAGGGTCGCGCGTTGGA 62.510 55.000 30.98 7.39 0.00 3.53
831 881 3.636313 TTAGGGTCGCGCGTTGGAG 62.636 63.158 30.98 0.00 0.00 3.86
834 884 3.343421 GGTCGCGCGTTGGAGTTT 61.343 61.111 30.98 0.00 0.00 2.66
835 885 2.629763 GTCGCGCGTTGGAGTTTT 59.370 55.556 30.98 0.00 0.00 2.43
836 886 1.010462 GTCGCGCGTTGGAGTTTTT 60.010 52.632 30.98 0.00 0.00 1.94
856 906 5.581126 TTTTTGAACATCAGTGCAGACTT 57.419 34.783 0.00 0.00 33.94 3.01
857 907 6.691754 TTTTTGAACATCAGTGCAGACTTA 57.308 33.333 0.00 0.00 33.94 2.24
858 908 6.691754 TTTTGAACATCAGTGCAGACTTAA 57.308 33.333 0.00 0.00 33.94 1.85
859 909 5.929697 TTGAACATCAGTGCAGACTTAAG 57.070 39.130 0.00 0.00 33.94 1.85
860 910 3.748048 TGAACATCAGTGCAGACTTAAGC 59.252 43.478 1.29 0.00 0.00 3.09
861 911 3.407424 ACATCAGTGCAGACTTAAGCA 57.593 42.857 1.29 0.00 38.65 3.91
869 919 4.535526 TGCAGACTTAAGCACTCATACA 57.464 40.909 1.29 0.00 35.51 2.29
870 920 5.089970 TGCAGACTTAAGCACTCATACAT 57.910 39.130 1.29 0.00 35.51 2.29
871 921 6.220726 TGCAGACTTAAGCACTCATACATA 57.779 37.500 1.29 0.00 35.51 2.29
872 922 6.042777 TGCAGACTTAAGCACTCATACATAC 58.957 40.000 1.29 0.00 35.51 2.39
873 923 5.174035 GCAGACTTAAGCACTCATACATACG 59.826 44.000 1.29 0.00 0.00 3.06
874 924 5.687730 CAGACTTAAGCACTCATACATACGG 59.312 44.000 1.29 0.00 0.00 4.02
875 925 4.945246 ACTTAAGCACTCATACATACGGG 58.055 43.478 1.29 0.00 0.00 5.28
876 926 2.240493 AAGCACTCATACATACGGGC 57.760 50.000 0.00 0.00 0.00 6.13
877 927 1.119684 AGCACTCATACATACGGGCA 58.880 50.000 0.00 0.00 0.00 5.36
878 928 1.694150 AGCACTCATACATACGGGCAT 59.306 47.619 0.00 0.00 0.00 4.40
879 929 2.897326 AGCACTCATACATACGGGCATA 59.103 45.455 0.00 0.00 0.00 3.14
880 930 3.515502 AGCACTCATACATACGGGCATAT 59.484 43.478 0.00 0.00 0.00 1.78
881 931 4.709886 AGCACTCATACATACGGGCATATA 59.290 41.667 0.00 0.00 0.00 0.86
882 932 4.804139 GCACTCATACATACGGGCATATAC 59.196 45.833 0.00 0.00 0.00 1.47
883 933 5.394224 GCACTCATACATACGGGCATATACT 60.394 44.000 0.00 0.00 0.00 2.12
884 934 6.631016 CACTCATACATACGGGCATATACTT 58.369 40.000 0.00 0.00 0.00 2.24
885 935 7.629866 GCACTCATACATACGGGCATATACTTA 60.630 40.741 0.00 0.00 0.00 2.24
886 936 8.414003 CACTCATACATACGGGCATATACTTAT 58.586 37.037 0.00 0.00 0.00 1.73
887 937 8.630917 ACTCATACATACGGGCATATACTTATC 58.369 37.037 0.00 0.00 0.00 1.75
888 938 7.948357 TCATACATACGGGCATATACTTATCC 58.052 38.462 0.00 0.00 0.00 2.59
889 939 5.609533 ACATACGGGCATATACTTATCCC 57.390 43.478 0.00 0.00 0.00 3.85
890 940 5.278061 ACATACGGGCATATACTTATCCCT 58.722 41.667 0.00 0.00 34.84 4.20
891 941 6.437755 ACATACGGGCATATACTTATCCCTA 58.562 40.000 0.00 0.00 34.84 3.53
892 942 7.073854 ACATACGGGCATATACTTATCCCTAT 58.926 38.462 0.00 0.00 34.84 2.57
893 943 8.229605 ACATACGGGCATATACTTATCCCTATA 58.770 37.037 0.00 0.00 34.84 1.31
894 944 9.085645 CATACGGGCATATACTTATCCCTATAA 57.914 37.037 0.00 0.00 34.84 0.98
895 945 7.983166 ACGGGCATATACTTATCCCTATAAA 57.017 36.000 0.00 0.00 34.84 1.40
896 946 7.789026 ACGGGCATATACTTATCCCTATAAAC 58.211 38.462 0.00 0.00 34.84 2.01
897 947 6.921857 CGGGCATATACTTATCCCTATAAACG 59.078 42.308 0.00 0.00 34.84 3.60
898 948 6.704937 GGGCATATACTTATCCCTATAAACGC 59.295 42.308 0.00 0.00 34.19 4.84
899 949 7.270047 GGCATATACTTATCCCTATAAACGCA 58.730 38.462 0.00 0.00 0.00 5.24
900 950 7.224167 GGCATATACTTATCCCTATAAACGCAC 59.776 40.741 0.00 0.00 0.00 5.34
901 951 7.762615 GCATATACTTATCCCTATAAACGCACA 59.237 37.037 0.00 0.00 0.00 4.57
902 952 9.817809 CATATACTTATCCCTATAAACGCACAT 57.182 33.333 0.00 0.00 0.00 3.21
905 955 9.817809 ATACTTATCCCTATAAACGCACATATG 57.182 33.333 0.00 0.00 0.00 1.78
921 971 6.872628 CACATATGCACATCCTACTCAAAT 57.127 37.500 1.58 0.00 0.00 2.32
922 972 6.895898 CACATATGCACATCCTACTCAAATC 58.104 40.000 1.58 0.00 0.00 2.17
923 973 6.000219 ACATATGCACATCCTACTCAAATCC 59.000 40.000 1.58 0.00 0.00 3.01
924 974 4.785346 ATGCACATCCTACTCAAATCCT 57.215 40.909 0.00 0.00 0.00 3.24
925 975 5.894298 ATGCACATCCTACTCAAATCCTA 57.106 39.130 0.00 0.00 0.00 2.94
926 976 5.692115 TGCACATCCTACTCAAATCCTAA 57.308 39.130 0.00 0.00 0.00 2.69
927 977 6.061022 TGCACATCCTACTCAAATCCTAAA 57.939 37.500 0.00 0.00 0.00 1.85
928 978 6.480763 TGCACATCCTACTCAAATCCTAAAA 58.519 36.000 0.00 0.00 0.00 1.52
929 979 7.118723 TGCACATCCTACTCAAATCCTAAAAT 58.881 34.615 0.00 0.00 0.00 1.82
930 980 8.271458 TGCACATCCTACTCAAATCCTAAAATA 58.729 33.333 0.00 0.00 0.00 1.40
931 981 9.120538 GCACATCCTACTCAAATCCTAAAATAA 57.879 33.333 0.00 0.00 0.00 1.40
955 1005 8.700722 AAATACAAAAATAAATGCGAGCATCA 57.299 26.923 11.26 3.11 35.31 3.07
956 1006 7.919313 ATACAAAAATAAATGCGAGCATCAG 57.081 32.000 11.26 0.00 35.31 2.90
957 1007 5.953183 ACAAAAATAAATGCGAGCATCAGA 58.047 33.333 11.26 0.40 35.31 3.27
958 1008 6.389091 ACAAAAATAAATGCGAGCATCAGAA 58.611 32.000 11.26 0.00 35.31 3.02
959 1009 7.037438 ACAAAAATAAATGCGAGCATCAGAAT 58.963 30.769 11.26 0.63 35.31 2.40
960 1010 7.546667 ACAAAAATAAATGCGAGCATCAGAATT 59.453 29.630 11.26 4.31 35.31 2.17
961 1011 9.022915 CAAAAATAAATGCGAGCATCAGAATTA 57.977 29.630 11.26 6.35 35.31 1.40
962 1012 8.792831 AAAATAAATGCGAGCATCAGAATTAG 57.207 30.769 11.26 0.00 35.31 1.73
963 1013 7.734924 AATAAATGCGAGCATCAGAATTAGA 57.265 32.000 11.26 0.00 35.31 2.10
964 1014 5.670149 AAATGCGAGCATCAGAATTAGAG 57.330 39.130 11.26 0.00 35.31 2.43
965 1015 4.597404 ATGCGAGCATCAGAATTAGAGA 57.403 40.909 4.52 0.00 33.17 3.10
966 1016 4.597404 TGCGAGCATCAGAATTAGAGAT 57.403 40.909 0.00 0.00 33.17 2.75
967 1017 5.712152 TGCGAGCATCAGAATTAGAGATA 57.288 39.130 0.00 0.00 33.17 1.98
968 1018 5.707931 TGCGAGCATCAGAATTAGAGATAG 58.292 41.667 0.00 0.00 33.17 2.08
969 1019 5.101628 GCGAGCATCAGAATTAGAGATAGG 58.898 45.833 0.00 0.00 33.17 2.57
970 1020 5.101628 CGAGCATCAGAATTAGAGATAGGC 58.898 45.833 0.00 0.00 33.17 3.93
971 1021 5.105797 CGAGCATCAGAATTAGAGATAGGCT 60.106 44.000 0.00 0.00 33.17 4.58
972 1022 6.040209 AGCATCAGAATTAGAGATAGGCTG 57.960 41.667 0.00 0.00 0.00 4.85
973 1023 5.779260 AGCATCAGAATTAGAGATAGGCTGA 59.221 40.000 0.00 0.00 35.65 4.26
974 1024 6.071221 AGCATCAGAATTAGAGATAGGCTGAG 60.071 42.308 0.00 0.00 34.80 3.35
975 1025 6.632909 CATCAGAATTAGAGATAGGCTGAGG 58.367 44.000 0.00 0.00 34.80 3.86
976 1026 5.958321 TCAGAATTAGAGATAGGCTGAGGA 58.042 41.667 0.00 0.00 0.00 3.71
977 1027 6.560361 TCAGAATTAGAGATAGGCTGAGGAT 58.440 40.000 0.00 0.00 0.00 3.24
978 1028 7.703755 TCAGAATTAGAGATAGGCTGAGGATA 58.296 38.462 0.00 0.00 0.00 2.59
979 1029 7.613801 TCAGAATTAGAGATAGGCTGAGGATAC 59.386 40.741 0.00 0.00 0.00 2.24
980 1030 6.895204 AGAATTAGAGATAGGCTGAGGATACC 59.105 42.308 0.00 0.00 37.17 2.73
981 1031 5.869540 TTAGAGATAGGCTGAGGATACCT 57.130 43.478 0.00 0.00 36.03 3.08
994 1044 5.731957 GAGGATACCTCTGTCCCTTTATC 57.268 47.826 10.16 0.00 46.41 1.75
995 1045 4.494591 AGGATACCTCTGTCCCTTTATCC 58.505 47.826 0.00 0.00 36.66 2.59
996 1046 4.173043 AGGATACCTCTGTCCCTTTATCCT 59.827 45.833 2.68 2.68 40.24 3.24
997 1047 4.528987 GGATACCTCTGTCCCTTTATCCTC 59.471 50.000 0.00 0.00 34.52 3.71
998 1048 3.786213 ACCTCTGTCCCTTTATCCTCT 57.214 47.619 0.00 0.00 0.00 3.69
999 1049 4.901785 ACCTCTGTCCCTTTATCCTCTA 57.098 45.455 0.00 0.00 0.00 2.43
1000 1050 5.222278 ACCTCTGTCCCTTTATCCTCTAA 57.778 43.478 0.00 0.00 0.00 2.10
1001 1051 5.600749 ACCTCTGTCCCTTTATCCTCTAAA 58.399 41.667 0.00 0.00 0.00 1.85
1002 1052 5.663556 ACCTCTGTCCCTTTATCCTCTAAAG 59.336 44.000 0.00 0.00 35.06 1.85
1003 1053 5.454045 CCTCTGTCCCTTTATCCTCTAAAGC 60.454 48.000 0.26 0.00 34.22 3.51
1004 1054 5.281314 TCTGTCCCTTTATCCTCTAAAGCT 58.719 41.667 0.26 0.00 34.22 3.74
1005 1055 5.364157 TCTGTCCCTTTATCCTCTAAAGCTC 59.636 44.000 0.00 0.00 34.22 4.09
1006 1056 5.281314 TGTCCCTTTATCCTCTAAAGCTCT 58.719 41.667 0.00 0.00 34.22 4.09
1007 1057 6.441222 TGTCCCTTTATCCTCTAAAGCTCTA 58.559 40.000 0.00 0.00 34.22 2.43
1057 1108 3.419759 CGGTTCAGTTTCCCGCCG 61.420 66.667 0.00 0.00 34.62 6.46
1058 1109 2.281276 GGTTCAGTTTCCCGCCGT 60.281 61.111 0.00 0.00 0.00 5.68
1148 1201 1.097547 CAAATCGCCGCAATCCCTCT 61.098 55.000 0.00 0.00 0.00 3.69
1265 1323 2.108278 CTCCCCGTTTCCCAGTTCGT 62.108 60.000 0.00 0.00 0.00 3.85
1468 1527 1.144565 CTGCGCTCGTCATCAAGGAG 61.145 60.000 9.73 0.00 41.79 3.69
1469 1528 1.139734 GCGCTCGTCATCAAGGAGA 59.860 57.895 0.00 0.00 41.48 3.71
1529 1588 4.390556 AGCTCCAGAGGACCCGCT 62.391 66.667 0.00 0.00 0.00 5.52
1546 1605 4.988716 TCCACGTCCACCCGCTCT 62.989 66.667 0.00 0.00 0.00 4.09
1709 1777 4.833390 AGCTGTGTTTAGGTAATCAGGAC 58.167 43.478 0.00 0.00 0.00 3.85
1796 1864 2.347114 CGTGCCCATGTGTCTGGA 59.653 61.111 0.00 0.00 38.69 3.86
1875 1943 3.849527 AGGGATTGCTGGTTCTTTTTCT 58.150 40.909 0.00 0.00 0.00 2.52
1877 1945 3.366374 GGGATTGCTGGTTCTTTTTCTCG 60.366 47.826 0.00 0.00 0.00 4.04
1887 1955 4.510340 GGTTCTTTTTCTCGCAGTAGTCAA 59.490 41.667 0.00 0.00 0.00 3.18
1954 2022 1.600916 GGACCTTTGGCGTCAGCTT 60.601 57.895 0.00 0.00 44.37 3.74
1972 2040 2.670229 GCTTAAACGGCTGGGCTTAAAC 60.670 50.000 0.00 0.00 0.00 2.01
2060 2128 0.881796 GTTGCTGGTACTTTCAGGGC 59.118 55.000 0.00 0.00 33.16 5.19
2081 2151 1.198637 GTGCTGCAGAGTGGATTTCAC 59.801 52.381 20.43 8.74 46.39 3.18
2331 2401 0.908198 AACTTTTGCTTGGTTGCCCA 59.092 45.000 0.00 0.00 39.65 5.36
2332 2402 0.465287 ACTTTTGCTTGGTTGCCCAG 59.535 50.000 0.00 0.00 43.15 4.45
2333 2403 0.881600 CTTTTGCTTGGTTGCCCAGC 60.882 55.000 4.51 4.51 43.15 4.85
2340 2410 0.036732 TTGGTTGCCCAGCAGAGTAG 59.963 55.000 0.00 0.00 43.15 2.57
2385 2461 3.975168 TCACTTTAACCTGTAGAGGGC 57.025 47.619 11.23 0.00 44.84 5.19
2388 2464 5.027460 TCACTTTAACCTGTAGAGGGCATA 58.973 41.667 11.23 0.00 44.84 3.14
2404 2491 7.246171 GAGGGCATACTATCCTCTCAAAATA 57.754 40.000 0.00 0.00 42.70 1.40
2407 2494 8.673251 AGGGCATACTATCCTCTCAAAATAATT 58.327 33.333 0.00 0.00 0.00 1.40
2408 2495 8.734386 GGGCATACTATCCTCTCAAAATAATTG 58.266 37.037 0.00 0.00 0.00 2.32
2418 2505 9.747898 TCCTCTCAAAATAATTGTTAGGCTTTA 57.252 29.630 0.00 0.00 0.00 1.85
2427 2514 9.474313 AATAATTGTTAGGCTTTAATCTGTCCA 57.526 29.630 0.00 0.00 0.00 4.02
2428 2515 7.775053 AATTGTTAGGCTTTAATCTGTCCAA 57.225 32.000 0.00 0.00 0.00 3.53
2429 2516 6.817765 TTGTTAGGCTTTAATCTGTCCAAG 57.182 37.500 0.00 0.00 0.00 3.61
2430 2517 5.876357 TGTTAGGCTTTAATCTGTCCAAGT 58.124 37.500 0.00 0.00 0.00 3.16
2431 2518 5.938125 TGTTAGGCTTTAATCTGTCCAAGTC 59.062 40.000 0.00 0.00 0.00 3.01
2432 2519 4.640771 AGGCTTTAATCTGTCCAAGTCA 57.359 40.909 0.00 0.00 0.00 3.41
2433 2520 5.184892 AGGCTTTAATCTGTCCAAGTCAT 57.815 39.130 0.00 0.00 0.00 3.06
2434 2521 5.574188 AGGCTTTAATCTGTCCAAGTCATT 58.426 37.500 0.00 0.00 0.00 2.57
2435 2522 5.416952 AGGCTTTAATCTGTCCAAGTCATTG 59.583 40.000 0.00 0.00 36.09 2.82
2436 2523 5.098211 GCTTTAATCTGTCCAAGTCATTGC 58.902 41.667 0.00 0.00 34.91 3.56
2437 2524 4.944962 TTAATCTGTCCAAGTCATTGCG 57.055 40.909 0.00 0.00 34.91 4.85
2438 2525 2.479566 ATCTGTCCAAGTCATTGCGT 57.520 45.000 0.00 0.00 34.91 5.24
2439 2526 1.795768 TCTGTCCAAGTCATTGCGTC 58.204 50.000 0.00 0.00 34.91 5.19
2447 2534 3.470709 CAAGTCATTGCGTCCTCCATAT 58.529 45.455 0.00 0.00 0.00 1.78
2477 2564 9.515020 GCAGCATTAACAGCTATAAAATGTTTA 57.485 29.630 4.12 0.00 41.14 2.01
2479 2566 9.736023 AGCATTAACAGCTATAAAATGTTTAGC 57.264 29.630 2.59 0.00 41.32 3.09
2533 2622 0.403271 ACAACTCCAGCCTCTGCATT 59.597 50.000 0.00 0.00 41.13 3.56
2574 2665 2.100418 GGTAAGGAACTAGGTGCTACGG 59.900 54.545 0.69 0.00 38.49 4.02
2575 2666 2.226962 AAGGAACTAGGTGCTACGGA 57.773 50.000 0.69 0.00 38.49 4.69
2582 2673 2.957006 ACTAGGTGCTACGGAATACTGG 59.043 50.000 0.00 0.00 0.00 4.00
2586 2677 2.934553 GGTGCTACGGAATACTGGAAAC 59.065 50.000 0.00 0.00 0.00 2.78
2603 2694 2.574006 AACAGCAGCCTCAGAAATGA 57.426 45.000 0.00 0.00 0.00 2.57
2606 2697 2.026542 ACAGCAGCCTCAGAAATGATCA 60.027 45.455 0.00 0.00 0.00 2.92
2633 2724 5.188327 TGAGTATGATTCTAGCTGGTTCG 57.812 43.478 0.00 0.00 0.00 3.95
2636 2727 6.074544 AGTATGATTCTAGCTGGTTCGTAC 57.925 41.667 18.45 18.45 0.00 3.67
2669 2760 4.861389 ACACGTCTAGACTATGAACTCG 57.139 45.455 23.53 10.50 0.00 4.18
2684 2775 4.056050 TGAACTCGTTTCTTTACCAGCTC 58.944 43.478 0.00 0.00 34.97 4.09
2710 2801 5.237344 AGGATTTTACATAGTGCGATTGCTC 59.763 40.000 6.47 2.25 43.34 4.26
2716 2807 1.939974 TAGTGCGATTGCTCATGACC 58.060 50.000 6.47 0.00 43.34 4.02
2737 2828 5.723295 ACCAAGATTATTGCCATGACAAAC 58.277 37.500 0.00 0.00 32.27 2.93
2747 2839 0.318120 CATGACAAACAGCCAACCCC 59.682 55.000 0.00 0.00 0.00 4.95
2758 2850 1.922447 AGCCAACCCCATCTTATCACA 59.078 47.619 0.00 0.00 0.00 3.58
2771 2863 6.591834 CCATCTTATCACATACTCCGGATTTC 59.408 42.308 3.57 0.00 0.00 2.17
2772 2864 6.097915 TCTTATCACATACTCCGGATTTCC 57.902 41.667 3.57 0.00 0.00 3.13
2842 2934 6.573664 TTTGTATGCATTAGAGTTGCTTGT 57.426 33.333 3.54 0.00 40.77 3.16
2968 3339 4.520111 TCTGGGCATAATTGATTTCCATCG 59.480 41.667 0.00 0.00 31.08 3.84
2981 3352 4.545208 TTTCCATCGTGATAACCTGTCA 57.455 40.909 0.00 0.00 0.00 3.58
2983 3354 2.829120 TCCATCGTGATAACCTGTCACA 59.171 45.455 7.01 0.00 44.77 3.58
2990 3361 4.798907 CGTGATAACCTGTCACATGTAGAC 59.201 45.833 16.70 16.70 44.77 2.59
2991 3362 5.109903 GTGATAACCTGTCACATGTAGACC 58.890 45.833 19.21 8.02 44.13 3.85
2993 3364 5.483937 TGATAACCTGTCACATGTAGACCTT 59.516 40.000 19.21 12.83 35.15 3.50
2994 3365 4.706842 AACCTGTCACATGTAGACCTTT 57.293 40.909 19.21 10.69 35.15 3.11
2995 3366 4.008074 ACCTGTCACATGTAGACCTTTG 57.992 45.455 19.21 11.07 35.15 2.77
2996 3367 3.391296 ACCTGTCACATGTAGACCTTTGT 59.609 43.478 19.21 11.50 35.15 2.83
2997 3368 4.141482 ACCTGTCACATGTAGACCTTTGTT 60.141 41.667 19.21 3.04 35.15 2.83
2998 3369 4.214119 CCTGTCACATGTAGACCTTTGTTG 59.786 45.833 19.21 0.00 35.15 3.33
2999 3370 3.563808 TGTCACATGTAGACCTTTGTTGC 59.436 43.478 19.21 0.00 35.15 4.17
3000 3371 3.815401 GTCACATGTAGACCTTTGTTGCT 59.185 43.478 14.04 0.00 0.00 3.91
3001 3372 4.994852 GTCACATGTAGACCTTTGTTGCTA 59.005 41.667 14.04 0.00 0.00 3.49
3002 3373 5.468746 GTCACATGTAGACCTTTGTTGCTAA 59.531 40.000 14.04 0.00 0.00 3.09
3003 3374 6.017440 GTCACATGTAGACCTTTGTTGCTAAA 60.017 38.462 14.04 0.00 0.00 1.85
3004 3375 6.714810 TCACATGTAGACCTTTGTTGCTAAAT 59.285 34.615 0.00 0.00 0.00 1.40
3005 3376 7.880713 TCACATGTAGACCTTTGTTGCTAAATA 59.119 33.333 0.00 0.00 0.00 1.40
3006 3377 8.677300 CACATGTAGACCTTTGTTGCTAAATAT 58.323 33.333 0.00 0.00 0.00 1.28
3007 3378 9.899661 ACATGTAGACCTTTGTTGCTAAATATA 57.100 29.630 0.00 0.00 0.00 0.86
3012 3383 8.197988 AGACCTTTGTTGCTAAATATAAGACG 57.802 34.615 0.00 0.00 0.00 4.18
3013 3384 7.822822 AGACCTTTGTTGCTAAATATAAGACGT 59.177 33.333 0.00 0.00 0.00 4.34
3014 3385 8.331730 ACCTTTGTTGCTAAATATAAGACGTT 57.668 30.769 0.00 0.00 0.00 3.99
3015 3386 8.789762 ACCTTTGTTGCTAAATATAAGACGTTT 58.210 29.630 0.00 0.00 0.00 3.60
3016 3387 9.620660 CCTTTGTTGCTAAATATAAGACGTTTT 57.379 29.630 0.00 0.00 0.00 2.43
3018 3389 8.958175 TTGTTGCTAAATATAAGACGTTTTGG 57.042 30.769 0.83 0.00 0.00 3.28
3019 3390 7.531716 TGTTGCTAAATATAAGACGTTTTGGG 58.468 34.615 0.83 0.00 0.00 4.12
3020 3391 7.390996 TGTTGCTAAATATAAGACGTTTTGGGA 59.609 33.333 0.83 0.00 0.00 4.37
3021 3392 7.548196 TGCTAAATATAAGACGTTTTGGGAG 57.452 36.000 0.83 0.00 0.00 4.30
3022 3393 7.107542 TGCTAAATATAAGACGTTTTGGGAGT 58.892 34.615 0.83 0.00 0.00 3.85
3023 3394 8.259411 TGCTAAATATAAGACGTTTTGGGAGTA 58.741 33.333 0.83 0.00 0.00 2.59
3040 3411 3.064931 GAGTATATTAGTGGCGGGCAAC 58.935 50.000 5.57 0.00 0.00 4.17
3065 3436 0.817634 CCCTGAAACCACTGTCGCAA 60.818 55.000 0.00 0.00 0.00 4.85
3136 3507 5.163814 CGATCTGTTTGACCAATCCTCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
3196 3567 4.519350 AGCAGAATGAAGTGCATATGATGG 59.481 41.667 6.97 0.00 42.47 3.51
3317 3689 1.408702 GTTTCAGGCTTTGCTGTCCAA 59.591 47.619 0.00 0.00 0.00 3.53
3339 3711 6.036083 CCAATCTAAACTCATCAGTACAACGG 59.964 42.308 0.00 0.00 30.14 4.44
3429 3801 2.567049 GAGGTAGTCTGTGCGCGT 59.433 61.111 8.43 0.00 0.00 6.01
3430 3802 1.801913 GAGGTAGTCTGTGCGCGTG 60.802 63.158 8.43 0.00 0.00 5.34
3472 3847 0.956633 TTGAGACGCCTAAGACGTGT 59.043 50.000 0.00 0.00 45.24 4.49
3475 3852 1.245732 AGACGCCTAAGACGTGTCTT 58.754 50.000 18.34 18.34 46.29 3.01
3477 3854 1.984297 GACGCCTAAGACGTGTCTTTC 59.016 52.381 19.36 7.88 46.95 2.62
3478 3855 1.612463 ACGCCTAAGACGTGTCTTTCT 59.388 47.619 19.36 0.00 46.95 2.52
3479 3856 1.986378 CGCCTAAGACGTGTCTTTCTG 59.014 52.381 19.36 10.07 46.95 3.02
3480 3857 2.338500 GCCTAAGACGTGTCTTTCTGG 58.662 52.381 19.36 18.08 46.95 3.86
3525 3902 1.611519 TACCCTTTTGTTGCGGGAAG 58.388 50.000 0.00 0.00 40.55 3.46
3580 3957 0.739462 TCGTTAACCGGAGCTGCATG 60.739 55.000 9.46 0.00 37.11 4.06
3581 3958 1.019278 CGTTAACCGGAGCTGCATGT 61.019 55.000 9.46 0.00 0.00 3.21
3582 3959 0.727398 GTTAACCGGAGCTGCATGTC 59.273 55.000 9.46 0.00 0.00 3.06
3583 3960 0.392461 TTAACCGGAGCTGCATGTCC 60.392 55.000 9.46 4.66 0.00 4.02
3609 3988 2.484264 GCATTCTACGTGGCTTTGTTCT 59.516 45.455 0.00 0.00 0.00 3.01
3612 3991 5.334569 GCATTCTACGTGGCTTTGTTCTTTA 60.335 40.000 0.00 0.00 0.00 1.85
3615 3994 5.603596 TCTACGTGGCTTTGTTCTTTAAGA 58.396 37.500 0.00 0.00 0.00 2.10
3667 4046 1.284982 GCGATGCGTTGTCTGTCACT 61.285 55.000 0.00 0.00 0.00 3.41
3675 4054 3.317150 CGTTGTCTGTCACTATTGCAGA 58.683 45.455 4.04 4.04 35.10 4.26
3683 4062 4.248058 TGTCACTATTGCAGACATGTCAG 58.752 43.478 27.02 20.37 37.36 3.51
3760 4144 1.882623 GAAGAAAGCAGTGTCCCCTTG 59.117 52.381 0.00 0.00 0.00 3.61
3765 4149 0.400594 AGCAGTGTCCCCTTGTAACC 59.599 55.000 0.00 0.00 0.00 2.85
3942 4350 0.555769 TGGAAGCAACAACCCCTCTT 59.444 50.000 0.00 0.00 0.00 2.85
3945 4353 0.555769 AAGCAACAACCCCTCTTCCA 59.444 50.000 0.00 0.00 0.00 3.53
3946 4354 0.555769 AGCAACAACCCCTCTTCCAA 59.444 50.000 0.00 0.00 0.00 3.53
3949 4357 2.289010 GCAACAACCCCTCTTCCAATTG 60.289 50.000 0.00 0.00 0.00 2.32
3975 4383 2.405559 TCATGAGCACATCCATCTCCT 58.594 47.619 0.00 0.00 34.15 3.69
3982 4390 2.045524 CACATCCATCTCCTGCTACCT 58.954 52.381 0.00 0.00 0.00 3.08
3983 4391 2.045524 ACATCCATCTCCTGCTACCTG 58.954 52.381 0.00 0.00 0.00 4.00
3990 4398 1.203187 TCTCCTGCTACCTGTGAAGGT 60.203 52.381 2.48 2.48 45.46 3.50
4000 4408 0.108138 CTGTGAAGGTCACCGATCCC 60.108 60.000 5.96 0.00 46.40 3.85
4028 4438 0.176910 TCACAGGTTCTGCGTTGACA 59.823 50.000 0.00 0.00 34.37 3.58
4081 4492 0.324943 CTCCACCCTCGACCAACATT 59.675 55.000 0.00 0.00 0.00 2.71
4082 4493 0.036164 TCCACCCTCGACCAACATTG 59.964 55.000 0.00 0.00 0.00 2.82
4109 4520 0.460311 GGCCTAAGCGCAGAGTAAGA 59.540 55.000 11.47 0.00 41.24 2.10
4122 4533 4.082190 GCAGAGTAAGACATGTGACCTGTA 60.082 45.833 1.15 0.00 0.00 2.74
4123 4534 5.394663 GCAGAGTAAGACATGTGACCTGTAT 60.395 44.000 1.15 0.00 0.00 2.29
4128 4539 3.338249 AGACATGTGACCTGTATGCAAC 58.662 45.455 1.15 0.00 0.00 4.17
4134 4545 1.296056 GACCTGTATGCAACGGCGTT 61.296 55.000 21.19 21.19 45.35 4.84
4167 4578 3.725754 AGGCAACGTTCCTCATTGT 57.274 47.368 11.94 0.00 46.39 2.71
4182 4621 1.338973 CATTGTGCCACAACTGCTTCT 59.661 47.619 13.33 0.00 41.40 2.85
4183 4645 1.473258 TTGTGCCACAACTGCTTCTT 58.527 45.000 6.08 0.00 32.34 2.52
4210 4672 0.521450 CACGGAGATGTCTCGACGTG 60.521 60.000 19.66 19.66 45.06 4.49
4245 4710 2.743752 CCGCCGACTTCTGCATGTG 61.744 63.158 0.00 0.00 0.00 3.21
4266 4731 2.724174 GCAACACCAATAAGTTGTTCGC 59.276 45.455 7.08 0.00 45.16 4.70
4386 4860 7.026631 TGGTTCACATTTGCTATTATGTAGC 57.973 36.000 5.31 5.31 40.76 3.58
4422 4896 4.207224 GTCAATATGATGAACGAGTCGGTG 59.793 45.833 18.30 0.00 0.00 4.94
4441 4928 3.532896 GACTCTTTGTCCATGCCGA 57.467 52.632 0.00 0.00 39.69 5.54
4495 4982 4.095483 GGGTGTTGCTCTATGTTTGATCTG 59.905 45.833 0.00 0.00 0.00 2.90
4497 4984 4.154737 GTGTTGCTCTATGTTTGATCTGCA 59.845 41.667 0.00 0.00 0.00 4.41
4539 5026 6.598525 TGTTGCATGTTATGTTTACTTCGAG 58.401 36.000 0.00 0.00 0.00 4.04
4572 5059 9.535878 GGACCATTTGTTATGTTTACTTTGAAA 57.464 29.630 0.00 0.00 0.00 2.69
4605 5092 6.016276 AGGATTTGCTACGTTTCACTTTGAAT 60.016 34.615 0.00 0.00 36.11 2.57
4612 5099 7.432838 TGCTACGTTTCACTTTGAATTTTTACC 59.567 33.333 0.00 0.00 36.11 2.85
4614 5101 9.511144 CTACGTTTCACTTTGAATTTTTACCTT 57.489 29.630 0.00 0.00 36.11 3.50
4615 5102 8.766000 ACGTTTCACTTTGAATTTTTACCTTT 57.234 26.923 0.00 0.00 36.11 3.11
4658 5145 8.586570 TGTGGCTTTTAAATTATGTTCAACTG 57.413 30.769 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 1.328986 CACAAATTTTGCCGCCGTTTT 59.671 42.857 9.04 0.00 0.00 2.43
84 86 5.289675 CGATTACTTTGAGAACATCGCTCTT 59.710 40.000 0.00 0.00 33.57 2.85
91 93 3.596214 ACGCCGATTACTTTGAGAACAT 58.404 40.909 0.00 0.00 0.00 2.71
93 95 4.418392 TCTACGCCGATTACTTTGAGAAC 58.582 43.478 0.00 0.00 0.00 3.01
125 128 1.008938 ACCACAATAGGGAGAGAGGCT 59.991 52.381 0.00 0.00 0.00 4.58
153 158 2.621445 AATCCCCGGCCATGTTCCA 61.621 57.895 2.24 0.00 0.00 3.53
178 183 0.617820 AGGAAGTGGCCTCGGTACAT 60.618 55.000 3.32 0.00 30.76 2.29
242 247 5.938125 TCGGATGATTCGTACTCAGATGATA 59.062 40.000 0.00 0.00 0.00 2.15
253 258 5.236263 CCATTTGTTCATCGGATGATTCGTA 59.764 40.000 20.53 3.47 39.39 3.43
277 282 5.396654 GCGATGAGTTTTTCTTTCACAACTC 59.603 40.000 4.31 4.31 43.67 3.01
300 305 2.289694 ACAAGGTATCATGGATAGCGGC 60.290 50.000 9.11 0.00 44.61 6.53
383 389 2.946329 AGCACCAATGTTGTGTCGTTTA 59.054 40.909 0.00 0.00 0.00 2.01
391 397 1.259609 CCCATCAGCACCAATGTTGT 58.740 50.000 0.00 0.00 38.18 3.32
395 401 1.324740 CCACCCCATCAGCACCAATG 61.325 60.000 0.00 0.00 0.00 2.82
396 402 1.000739 CCACCCCATCAGCACCAAT 59.999 57.895 0.00 0.00 0.00 3.16
528 539 2.929848 CGCACGCGTTTCGGTACAA 61.930 57.895 10.22 0.00 43.86 2.41
636 649 2.556766 CTTTCTCTTCCCTCCTTCCCT 58.443 52.381 0.00 0.00 0.00 4.20
640 653 2.743131 TCCCTTTCTCTTCCCTCCTT 57.257 50.000 0.00 0.00 0.00 3.36
641 654 2.114506 TCTTCCCTTTCTCTTCCCTCCT 59.885 50.000 0.00 0.00 0.00 3.69
693 743 3.228017 GCGCCCTAGTCCTCCCTC 61.228 72.222 0.00 0.00 0.00 4.30
723 773 0.785708 GTCGAACAAACATGCGCGAG 60.786 55.000 12.10 0.01 0.00 5.03
734 784 0.375454 CCGTGTTTGCTGTCGAACAA 59.625 50.000 0.00 0.00 45.41 2.83
735 785 2.010670 CCGTGTTTGCTGTCGAACA 58.989 52.632 0.00 0.00 42.66 3.18
741 791 1.398958 AATTGGGCCGTGTTTGCTGT 61.399 50.000 0.00 0.00 0.00 4.40
743 793 0.467804 AAAATTGGGCCGTGTTTGCT 59.532 45.000 0.00 0.00 0.00 3.91
759 809 0.386113 CCGCTTTTTCCGTCCCAAAA 59.614 50.000 0.00 0.00 0.00 2.44
766 816 1.015868 TTTTCGTCCGCTTTTTCCGT 58.984 45.000 0.00 0.00 0.00 4.69
773 823 3.662454 CGTCGTTTATTTTTCGTCCGCTT 60.662 43.478 0.00 0.00 0.00 4.68
774 824 2.159934 CGTCGTTTATTTTTCGTCCGCT 60.160 45.455 0.00 0.00 0.00 5.52
775 825 2.152693 CGTCGTTTATTTTTCGTCCGC 58.847 47.619 0.00 0.00 0.00 5.54
776 826 2.155539 ACCGTCGTTTATTTTTCGTCCG 59.844 45.455 0.00 0.00 0.00 4.79
777 827 3.423515 GGACCGTCGTTTATTTTTCGTCC 60.424 47.826 0.00 0.00 0.00 4.79
778 828 3.184178 TGGACCGTCGTTTATTTTTCGTC 59.816 43.478 0.00 0.00 0.00 4.20
779 829 3.059665 GTGGACCGTCGTTTATTTTTCGT 60.060 43.478 0.00 0.00 0.00 3.85
780 830 3.472431 GTGGACCGTCGTTTATTTTTCG 58.528 45.455 0.00 0.00 0.00 3.46
781 831 3.472431 CGTGGACCGTCGTTTATTTTTC 58.528 45.455 0.00 0.00 0.00 2.29
782 832 2.223845 CCGTGGACCGTCGTTTATTTTT 59.776 45.455 7.84 0.00 33.66 1.94
783 833 1.799994 CCGTGGACCGTCGTTTATTTT 59.200 47.619 7.84 0.00 33.66 1.82
784 834 1.431496 CCGTGGACCGTCGTTTATTT 58.569 50.000 7.84 0.00 33.66 1.40
785 835 1.015607 GCCGTGGACCGTCGTTTATT 61.016 55.000 7.84 0.00 33.66 1.40
786 836 1.446618 GCCGTGGACCGTCGTTTAT 60.447 57.895 7.84 0.00 33.66 1.40
787 837 2.049248 GCCGTGGACCGTCGTTTA 60.049 61.111 7.84 0.00 33.66 2.01
788 838 4.974989 GGCCGTGGACCGTCGTTT 62.975 66.667 7.84 0.00 33.66 3.60
797 847 2.246761 CTAAATGGTCCGGCCGTGGA 62.247 60.000 26.12 12.73 41.21 4.02
798 848 1.817941 CTAAATGGTCCGGCCGTGG 60.818 63.158 26.12 10.11 41.21 4.94
799 849 1.817941 CCTAAATGGTCCGGCCGTG 60.818 63.158 26.12 15.93 41.21 4.94
800 850 2.587889 CCTAAATGGTCCGGCCGT 59.412 61.111 26.12 5.81 41.21 5.68
801 851 2.203153 CCCTAAATGGTCCGGCCG 60.203 66.667 21.04 21.04 41.21 6.13
802 852 3.004090 ACCCTAAATGGTCCGGCC 58.996 61.111 0.00 1.41 31.15 6.13
808 858 2.510691 CGCGCGACCCTAAATGGT 60.511 61.111 28.94 0.00 42.79 3.55
809 859 2.104253 AACGCGCGACCCTAAATGG 61.104 57.895 39.36 2.23 0.00 3.16
810 860 1.060308 CAACGCGCGACCCTAAATG 59.940 57.895 39.36 16.45 0.00 2.32
811 861 2.104253 CCAACGCGCGACCCTAAAT 61.104 57.895 39.36 8.45 0.00 1.40
812 862 2.739287 CCAACGCGCGACCCTAAA 60.739 61.111 39.36 0.00 0.00 1.85
813 863 3.636313 CTCCAACGCGCGACCCTAA 62.636 63.158 39.36 14.98 0.00 2.69
814 864 4.124351 CTCCAACGCGCGACCCTA 62.124 66.667 39.36 16.11 0.00 3.53
817 867 2.383027 AAAAACTCCAACGCGCGACC 62.383 55.000 39.36 0.00 0.00 4.79
818 868 1.010462 AAAAACTCCAACGCGCGAC 60.010 52.632 39.36 0.00 0.00 5.19
819 869 3.412061 AAAAACTCCAACGCGCGA 58.588 50.000 39.36 13.65 0.00 5.87
834 884 5.581126 AAGTCTGCACTGATGTTCAAAAA 57.419 34.783 0.00 0.00 31.06 1.94
835 885 6.691754 TTAAGTCTGCACTGATGTTCAAAA 57.308 33.333 0.00 0.00 31.06 2.44
836 886 5.277974 GCTTAAGTCTGCACTGATGTTCAAA 60.278 40.000 4.02 0.00 31.06 2.69
837 887 4.214119 GCTTAAGTCTGCACTGATGTTCAA 59.786 41.667 4.02 0.00 31.06 2.69
838 888 3.748048 GCTTAAGTCTGCACTGATGTTCA 59.252 43.478 4.02 0.00 31.06 3.18
839 889 3.748048 TGCTTAAGTCTGCACTGATGTTC 59.252 43.478 4.02 0.00 33.94 3.18
840 890 3.743521 TGCTTAAGTCTGCACTGATGTT 58.256 40.909 4.02 0.00 33.94 2.71
841 891 3.407424 TGCTTAAGTCTGCACTGATGT 57.593 42.857 4.02 0.00 33.94 3.06
848 898 4.535526 TGTATGAGTGCTTAAGTCTGCA 57.464 40.909 4.02 0.00 36.79 4.41
849 899 5.174035 CGTATGTATGAGTGCTTAAGTCTGC 59.826 44.000 4.02 0.00 0.00 4.26
850 900 5.687730 CCGTATGTATGAGTGCTTAAGTCTG 59.312 44.000 4.02 0.00 0.00 3.51
851 901 5.221263 CCCGTATGTATGAGTGCTTAAGTCT 60.221 44.000 4.02 3.32 0.00 3.24
852 902 4.982916 CCCGTATGTATGAGTGCTTAAGTC 59.017 45.833 4.02 0.00 0.00 3.01
853 903 4.739735 GCCCGTATGTATGAGTGCTTAAGT 60.740 45.833 4.02 0.00 0.00 2.24
854 904 3.741344 GCCCGTATGTATGAGTGCTTAAG 59.259 47.826 0.00 0.00 0.00 1.85
855 905 3.133183 TGCCCGTATGTATGAGTGCTTAA 59.867 43.478 0.00 0.00 0.00 1.85
856 906 2.696187 TGCCCGTATGTATGAGTGCTTA 59.304 45.455 0.00 0.00 0.00 3.09
857 907 1.484653 TGCCCGTATGTATGAGTGCTT 59.515 47.619 0.00 0.00 0.00 3.91
858 908 1.119684 TGCCCGTATGTATGAGTGCT 58.880 50.000 0.00 0.00 0.00 4.40
859 909 2.169832 ATGCCCGTATGTATGAGTGC 57.830 50.000 0.00 0.00 0.00 4.40
860 910 6.208988 AGTATATGCCCGTATGTATGAGTG 57.791 41.667 0.00 0.00 0.00 3.51
861 911 6.852420 AAGTATATGCCCGTATGTATGAGT 57.148 37.500 0.00 0.00 0.00 3.41
862 912 8.082852 GGATAAGTATATGCCCGTATGTATGAG 58.917 40.741 0.00 0.00 0.00 2.90
863 913 7.014905 GGGATAAGTATATGCCCGTATGTATGA 59.985 40.741 0.00 0.00 42.56 2.15
864 914 7.152645 GGGATAAGTATATGCCCGTATGTATG 58.847 42.308 0.00 0.00 42.56 2.39
865 915 7.299246 GGGATAAGTATATGCCCGTATGTAT 57.701 40.000 0.00 0.00 42.56 2.29
866 916 6.720112 GGGATAAGTATATGCCCGTATGTA 57.280 41.667 0.00 0.00 42.56 2.29
867 917 5.609533 GGGATAAGTATATGCCCGTATGT 57.390 43.478 0.00 0.00 42.56 2.29
875 925 7.762615 TGTGCGTTTATAGGGATAAGTATATGC 59.237 37.037 0.00 0.00 0.00 3.14
876 926 9.817809 ATGTGCGTTTATAGGGATAAGTATATG 57.182 33.333 0.00 0.00 0.00 1.78
879 929 9.817809 CATATGTGCGTTTATAGGGATAAGTAT 57.182 33.333 0.00 0.00 0.00 2.12
880 930 7.762615 GCATATGTGCGTTTATAGGGATAAGTA 59.237 37.037 4.29 0.00 42.28 2.24
881 931 6.594159 GCATATGTGCGTTTATAGGGATAAGT 59.406 38.462 4.29 0.00 42.28 2.24
882 932 7.005062 GCATATGTGCGTTTATAGGGATAAG 57.995 40.000 4.29 0.00 42.28 1.73
883 933 6.978343 GCATATGTGCGTTTATAGGGATAA 57.022 37.500 4.29 0.00 42.28 1.75
898 948 6.072838 GGATTTGAGTAGGATGTGCATATGTG 60.073 42.308 0.00 0.00 0.00 3.21
899 949 6.000219 GGATTTGAGTAGGATGTGCATATGT 59.000 40.000 0.00 0.00 0.00 2.29
900 950 6.236409 AGGATTTGAGTAGGATGTGCATATG 58.764 40.000 0.00 0.00 0.00 1.78
901 951 6.445451 AGGATTTGAGTAGGATGTGCATAT 57.555 37.500 0.00 0.00 0.00 1.78
902 952 5.894298 AGGATTTGAGTAGGATGTGCATA 57.106 39.130 0.00 0.00 0.00 3.14
903 953 4.785346 AGGATTTGAGTAGGATGTGCAT 57.215 40.909 0.00 0.00 0.00 3.96
904 954 5.692115 TTAGGATTTGAGTAGGATGTGCA 57.308 39.130 0.00 0.00 0.00 4.57
905 955 7.573968 ATTTTAGGATTTGAGTAGGATGTGC 57.426 36.000 0.00 0.00 0.00 4.57
929 979 9.794685 TGATGCTCGCATTTATTTTTGTATTTA 57.205 25.926 5.79 0.00 36.70 1.40
930 980 8.700722 TGATGCTCGCATTTATTTTTGTATTT 57.299 26.923 5.79 0.00 36.70 1.40
931 981 8.190122 TCTGATGCTCGCATTTATTTTTGTATT 58.810 29.630 5.79 0.00 36.70 1.89
932 982 7.706159 TCTGATGCTCGCATTTATTTTTGTAT 58.294 30.769 5.79 0.00 36.70 2.29
933 983 7.082700 TCTGATGCTCGCATTTATTTTTGTA 57.917 32.000 5.79 0.00 36.70 2.41
934 984 5.953183 TCTGATGCTCGCATTTATTTTTGT 58.047 33.333 5.79 0.00 36.70 2.83
935 985 6.874297 TTCTGATGCTCGCATTTATTTTTG 57.126 33.333 5.79 0.00 36.70 2.44
936 986 9.241317 CTAATTCTGATGCTCGCATTTATTTTT 57.759 29.630 5.79 0.36 36.70 1.94
937 987 8.623903 TCTAATTCTGATGCTCGCATTTATTTT 58.376 29.630 5.79 1.73 36.70 1.82
938 988 8.158169 TCTAATTCTGATGCTCGCATTTATTT 57.842 30.769 5.79 0.80 36.70 1.40
939 989 7.658982 TCTCTAATTCTGATGCTCGCATTTATT 59.341 33.333 5.79 6.45 36.70 1.40
940 990 7.157347 TCTCTAATTCTGATGCTCGCATTTAT 58.843 34.615 5.79 0.00 36.70 1.40
941 991 6.515832 TCTCTAATTCTGATGCTCGCATTTA 58.484 36.000 5.79 0.13 36.70 1.40
942 992 5.363101 TCTCTAATTCTGATGCTCGCATTT 58.637 37.500 5.79 0.00 36.70 2.32
943 993 4.953667 TCTCTAATTCTGATGCTCGCATT 58.046 39.130 5.79 0.00 36.70 3.56
944 994 4.597404 TCTCTAATTCTGATGCTCGCAT 57.403 40.909 3.70 3.70 39.69 4.73
945 995 4.597404 ATCTCTAATTCTGATGCTCGCA 57.403 40.909 0.00 0.00 0.00 5.10
946 996 5.101628 CCTATCTCTAATTCTGATGCTCGC 58.898 45.833 0.00 0.00 0.00 5.03
947 997 5.101628 GCCTATCTCTAATTCTGATGCTCG 58.898 45.833 0.00 0.00 0.00 5.03
948 998 6.071447 TCAGCCTATCTCTAATTCTGATGCTC 60.071 42.308 0.00 0.00 0.00 4.26
949 999 5.779260 TCAGCCTATCTCTAATTCTGATGCT 59.221 40.000 0.00 0.00 0.00 3.79
950 1000 6.035368 TCAGCCTATCTCTAATTCTGATGC 57.965 41.667 0.00 0.00 0.00 3.91
951 1001 6.436847 TCCTCAGCCTATCTCTAATTCTGATG 59.563 42.308 0.00 0.00 0.00 3.07
952 1002 6.560361 TCCTCAGCCTATCTCTAATTCTGAT 58.440 40.000 0.00 0.00 0.00 2.90
953 1003 5.958321 TCCTCAGCCTATCTCTAATTCTGA 58.042 41.667 0.00 0.00 0.00 3.27
954 1004 6.855763 ATCCTCAGCCTATCTCTAATTCTG 57.144 41.667 0.00 0.00 0.00 3.02
955 1005 6.895204 GGTATCCTCAGCCTATCTCTAATTCT 59.105 42.308 0.00 0.00 0.00 2.40
956 1006 6.895204 AGGTATCCTCAGCCTATCTCTAATTC 59.105 42.308 0.00 0.00 0.00 2.17
957 1007 6.810500 AGGTATCCTCAGCCTATCTCTAATT 58.189 40.000 0.00 0.00 0.00 1.40
958 1008 6.416044 AGGTATCCTCAGCCTATCTCTAAT 57.584 41.667 0.00 0.00 0.00 1.73
959 1009 5.869540 AGGTATCCTCAGCCTATCTCTAA 57.130 43.478 0.00 0.00 0.00 2.10
973 1023 4.173043 AGGATAAAGGGACAGAGGTATCCT 59.827 45.833 4.54 4.54 41.51 3.24
974 1024 4.494591 AGGATAAAGGGACAGAGGTATCC 58.505 47.826 0.00 0.00 38.07 2.59
975 1025 5.399113 AGAGGATAAAGGGACAGAGGTATC 58.601 45.833 0.00 0.00 0.00 2.24
976 1026 5.426325 AGAGGATAAAGGGACAGAGGTAT 57.574 43.478 0.00 0.00 0.00 2.73
977 1027 4.901785 AGAGGATAAAGGGACAGAGGTA 57.098 45.455 0.00 0.00 0.00 3.08
978 1028 3.786213 AGAGGATAAAGGGACAGAGGT 57.214 47.619 0.00 0.00 0.00 3.85
979 1029 5.454045 GCTTTAGAGGATAAAGGGACAGAGG 60.454 48.000 8.89 0.00 35.64 3.69
980 1030 5.365314 AGCTTTAGAGGATAAAGGGACAGAG 59.635 44.000 8.89 0.00 35.64 3.35
981 1031 5.281314 AGCTTTAGAGGATAAAGGGACAGA 58.719 41.667 8.89 0.00 35.64 3.41
982 1032 5.365314 AGAGCTTTAGAGGATAAAGGGACAG 59.635 44.000 8.89 0.00 35.64 3.51
983 1033 5.281314 AGAGCTTTAGAGGATAAAGGGACA 58.719 41.667 8.89 0.00 35.64 4.02
984 1034 5.880164 AGAGCTTTAGAGGATAAAGGGAC 57.120 43.478 8.89 0.00 35.64 4.46
985 1035 5.540719 GCTAGAGCTTTAGAGGATAAAGGGA 59.459 44.000 15.20 0.00 35.64 4.20
986 1036 5.565834 CGCTAGAGCTTTAGAGGATAAAGGG 60.566 48.000 15.20 0.00 39.32 3.95
987 1037 5.465935 CGCTAGAGCTTTAGAGGATAAAGG 58.534 45.833 15.20 0.00 39.32 3.11
988 1038 4.920927 GCGCTAGAGCTTTAGAGGATAAAG 59.079 45.833 15.20 3.54 39.32 1.85
989 1039 4.556898 CGCGCTAGAGCTTTAGAGGATAAA 60.557 45.833 16.69 0.00 39.32 1.40
990 1040 3.058155 CGCGCTAGAGCTTTAGAGGATAA 60.058 47.826 16.69 0.00 39.32 1.75
991 1041 2.484651 CGCGCTAGAGCTTTAGAGGATA 59.515 50.000 16.69 0.00 39.32 2.59
992 1042 1.268352 CGCGCTAGAGCTTTAGAGGAT 59.732 52.381 16.69 0.00 39.32 3.24
993 1043 0.663688 CGCGCTAGAGCTTTAGAGGA 59.336 55.000 16.69 0.00 39.32 3.71
994 1044 0.318275 CCGCGCTAGAGCTTTAGAGG 60.318 60.000 16.69 10.21 39.32 3.69
995 1045 0.318275 CCCGCGCTAGAGCTTTAGAG 60.318 60.000 16.69 12.60 39.32 2.43
996 1046 1.734137 CCCGCGCTAGAGCTTTAGA 59.266 57.895 16.69 0.00 39.32 2.10
997 1047 1.951631 GCCCGCGCTAGAGCTTTAG 60.952 63.158 16.69 6.92 39.32 1.85
998 1048 2.106332 GCCCGCGCTAGAGCTTTA 59.894 61.111 16.69 0.00 39.32 1.85
1105 1158 0.179234 GGAGCAGAAGAACCCTAGGC 59.821 60.000 2.05 0.00 0.00 3.93
1148 1201 0.468648 TATGACGGAGAGGAGAGCGA 59.531 55.000 0.00 0.00 0.00 4.93
1210 1268 1.313812 ACCTCCGTGGAGATGTCGAC 61.314 60.000 17.52 9.11 44.53 4.20
1265 1323 4.680237 CACCTTGCGTGCGGAGGA 62.680 66.667 17.62 0.00 35.18 3.71
1411 1470 3.873952 GGTAGTTCTTGGTGATGATCTGC 59.126 47.826 0.00 0.00 0.00 4.26
1468 1527 2.360475 GCAAGCCTGTCCCCAGTC 60.360 66.667 0.00 0.00 36.95 3.51
1469 1528 3.971702 GGCAAGCCTGTCCCCAGT 61.972 66.667 3.29 0.00 36.95 4.00
1529 1588 4.988716 AGAGCGGGTGGACGTGGA 62.989 66.667 0.00 0.00 35.98 4.02
1875 1943 3.746045 AAAACCTCTTGACTACTGCGA 57.254 42.857 0.00 0.00 0.00 5.10
1877 1945 5.169295 ACGATAAAACCTCTTGACTACTGC 58.831 41.667 0.00 0.00 0.00 4.40
1954 2022 1.158434 CGTTTAAGCCCAGCCGTTTA 58.842 50.000 0.00 0.00 0.00 2.01
1961 2029 2.743636 TCAGTCTCGTTTAAGCCCAG 57.256 50.000 0.00 0.00 0.00 4.45
1972 2040 1.134965 GGGTGGTTCTCATCAGTCTCG 60.135 57.143 0.00 0.00 0.00 4.04
2060 2128 0.445436 GAAATCCACTCTGCAGCACG 59.555 55.000 9.47 2.20 0.00 5.34
2331 2401 7.217200 TCACAAATTAGTGTTTCTACTCTGCT 58.783 34.615 0.00 0.00 40.37 4.24
2332 2402 7.421530 TCACAAATTAGTGTTTCTACTCTGC 57.578 36.000 0.00 0.00 40.37 4.26
2333 2403 9.651718 GTTTCACAAATTAGTGTTTCTACTCTG 57.348 33.333 0.00 0.00 40.37 3.35
2364 2438 3.649023 TGCCCTCTACAGGTTAAAGTGAA 59.351 43.478 0.00 0.00 38.30 3.18
2382 2458 8.734386 CAATTATTTTGAGAGGATAGTATGCCC 58.266 37.037 0.00 0.00 0.00 5.36
2388 2464 9.343539 GCCTAACAATTATTTTGAGAGGATAGT 57.656 33.333 11.72 0.00 31.26 2.12
2404 2491 7.451566 ACTTGGACAGATTAAAGCCTAACAATT 59.548 33.333 0.00 0.00 0.00 2.32
2407 2494 5.876357 ACTTGGACAGATTAAAGCCTAACA 58.124 37.500 0.00 0.00 0.00 2.41
2408 2495 5.938125 TGACTTGGACAGATTAAAGCCTAAC 59.062 40.000 0.00 0.00 0.00 2.34
2418 2505 2.744202 GACGCAATGACTTGGACAGATT 59.256 45.455 0.00 0.00 32.72 2.40
2420 2507 1.608025 GGACGCAATGACTTGGACAGA 60.608 52.381 0.00 0.00 32.72 3.41
2421 2508 0.798776 GGACGCAATGACTTGGACAG 59.201 55.000 0.00 0.00 32.72 3.51
2422 2509 0.396435 AGGACGCAATGACTTGGACA 59.604 50.000 0.00 0.00 32.72 4.02
2423 2510 1.079503 GAGGACGCAATGACTTGGAC 58.920 55.000 0.00 0.00 32.72 4.02
2424 2511 0.036388 GGAGGACGCAATGACTTGGA 60.036 55.000 0.00 0.00 32.72 3.53
2425 2512 0.321564 TGGAGGACGCAATGACTTGG 60.322 55.000 0.00 0.00 32.72 3.61
2426 2513 1.742761 ATGGAGGACGCAATGACTTG 58.257 50.000 0.00 0.00 35.36 3.16
2427 2514 3.733337 GATATGGAGGACGCAATGACTT 58.267 45.455 0.00 0.00 0.00 3.01
2428 2515 2.288457 CGATATGGAGGACGCAATGACT 60.288 50.000 0.00 0.00 0.00 3.41
2429 2516 2.061773 CGATATGGAGGACGCAATGAC 58.938 52.381 0.00 0.00 0.00 3.06
2430 2517 1.686587 ACGATATGGAGGACGCAATGA 59.313 47.619 0.00 0.00 0.00 2.57
2431 2518 1.794701 CACGATATGGAGGACGCAATG 59.205 52.381 0.00 0.00 0.00 2.82
2432 2519 1.873903 GCACGATATGGAGGACGCAAT 60.874 52.381 0.00 0.00 0.00 3.56
2433 2520 0.529773 GCACGATATGGAGGACGCAA 60.530 55.000 0.00 0.00 0.00 4.85
2434 2521 1.067416 GCACGATATGGAGGACGCA 59.933 57.895 0.00 0.00 0.00 5.24
2435 2522 0.941463 CTGCACGATATGGAGGACGC 60.941 60.000 0.00 0.00 42.88 5.19
2436 2523 0.941463 GCTGCACGATATGGAGGACG 60.941 60.000 0.00 0.00 46.53 4.79
2437 2524 0.104855 TGCTGCACGATATGGAGGAC 59.895 55.000 0.00 0.00 46.53 3.85
2438 2525 2.515288 TGCTGCACGATATGGAGGA 58.485 52.632 0.00 0.00 46.53 3.71
2439 2526 1.888215 AATGCTGCACGATATGGAGG 58.112 50.000 3.57 0.00 46.53 4.30
2447 2534 2.378445 TAGCTGTTAATGCTGCACGA 57.622 45.000 3.57 0.00 41.32 4.35
2512 2601 1.376553 GCAGAGGCTGGAGTTGTCC 60.377 63.158 0.00 0.00 44.24 4.02
2515 2604 0.809385 CAATGCAGAGGCTGGAGTTG 59.191 55.000 0.00 0.00 41.91 3.16
2517 2606 1.302285 CCAATGCAGAGGCTGGAGT 59.698 57.895 0.00 0.00 37.50 3.85
2533 2622 0.467844 AAGGCTGTGTGCATCAACCA 60.468 50.000 13.88 0.00 45.15 3.67
2574 2665 2.680339 GAGGCTGCTGTTTCCAGTATTC 59.320 50.000 0.00 0.00 41.02 1.75
2575 2666 2.040278 TGAGGCTGCTGTTTCCAGTATT 59.960 45.455 0.00 0.00 41.02 1.89
2582 2673 2.816087 TCATTTCTGAGGCTGCTGTTTC 59.184 45.455 0.00 0.00 0.00 2.78
2586 2677 2.640184 TGATCATTTCTGAGGCTGCTG 58.360 47.619 0.00 0.00 34.12 4.41
2603 2694 7.660617 CCAGCTAGAATCATACTCAAACATGAT 59.339 37.037 0.00 0.00 42.35 2.45
2606 2697 6.893583 ACCAGCTAGAATCATACTCAAACAT 58.106 36.000 0.00 0.00 0.00 2.71
2636 2727 6.618811 AGTCTAGACGTGTTTATGGTACAAG 58.381 40.000 17.07 0.00 38.14 3.16
2669 2760 3.418684 TCCTGGAGCTGGTAAAGAAAC 57.581 47.619 0.00 0.00 0.00 2.78
2684 2775 5.751680 CAATCGCACTATGTAAAATCCTGG 58.248 41.667 0.00 0.00 0.00 4.45
2710 2801 5.068067 TGTCATGGCAATAATCTTGGTCATG 59.932 40.000 0.00 0.00 34.00 3.07
2716 2807 5.290158 GCTGTTTGTCATGGCAATAATCTTG 59.710 40.000 14.57 2.01 0.00 3.02
2737 2828 2.301346 GTGATAAGATGGGGTTGGCTG 58.699 52.381 0.00 0.00 0.00 4.85
2747 2839 6.591834 GGAAATCCGGAGTATGTGATAAGATG 59.408 42.308 11.34 0.00 0.00 2.90
2758 2850 7.518188 ACAATAATCAAGGAAATCCGGAGTAT 58.482 34.615 11.34 0.00 42.08 2.12
2798 2890 8.531622 ACAAATGATTCATTAAATTCGTGCAA 57.468 26.923 12.15 0.00 32.43 4.08
2842 2934 5.462530 TGAACTAGTAGCAACAGCAGTAA 57.537 39.130 0.00 0.00 0.00 2.24
2877 2969 8.722342 TGCTAATACAATTTTGAGAAACGAAC 57.278 30.769 0.00 0.00 0.00 3.95
2909 3001 7.727181 ACCTGTGCTACTAGTATCTATTTTGG 58.273 38.462 2.33 2.19 0.00 3.28
2943 3151 6.294899 CGATGGAAATCAATTATGCCCAGAAT 60.295 38.462 0.00 0.00 0.00 2.40
2968 3339 5.105310 AGGTCTACATGTGACAGGTTATCAC 60.105 44.000 21.81 0.49 45.58 3.06
2981 3352 8.807948 ATATTTAGCAACAAAGGTCTACATGT 57.192 30.769 2.69 2.69 0.00 3.21
2990 3361 9.620660 AAAACGTCTTATATTTAGCAACAAAGG 57.379 29.630 0.00 0.00 0.00 3.11
2993 3364 8.024285 CCCAAAACGTCTTATATTTAGCAACAA 58.976 33.333 0.00 0.00 0.00 2.83
2994 3365 7.390996 TCCCAAAACGTCTTATATTTAGCAACA 59.609 33.333 0.00 0.00 0.00 3.33
2995 3366 7.754625 TCCCAAAACGTCTTATATTTAGCAAC 58.245 34.615 0.00 0.00 0.00 4.17
2996 3367 7.608761 ACTCCCAAAACGTCTTATATTTAGCAA 59.391 33.333 0.00 0.00 0.00 3.91
2997 3368 7.107542 ACTCCCAAAACGTCTTATATTTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
2998 3369 7.549615 ACTCCCAAAACGTCTTATATTTAGC 57.450 36.000 0.00 0.00 0.00 3.09
3005 3376 9.760077 CACTAATATACTCCCAAAACGTCTTAT 57.240 33.333 0.00 0.00 0.00 1.73
3006 3377 8.199449 CCACTAATATACTCCCAAAACGTCTTA 58.801 37.037 0.00 0.00 0.00 2.10
3007 3378 7.046033 CCACTAATATACTCCCAAAACGTCTT 58.954 38.462 0.00 0.00 0.00 3.01
3008 3379 6.579865 CCACTAATATACTCCCAAAACGTCT 58.420 40.000 0.00 0.00 0.00 4.18
3009 3380 5.235831 GCCACTAATATACTCCCAAAACGTC 59.764 44.000 0.00 0.00 0.00 4.34
3010 3381 5.121105 GCCACTAATATACTCCCAAAACGT 58.879 41.667 0.00 0.00 0.00 3.99
3011 3382 4.210537 CGCCACTAATATACTCCCAAAACG 59.789 45.833 0.00 0.00 0.00 3.60
3012 3383 4.514066 CCGCCACTAATATACTCCCAAAAC 59.486 45.833 0.00 0.00 0.00 2.43
3013 3384 4.445162 CCCGCCACTAATATACTCCCAAAA 60.445 45.833 0.00 0.00 0.00 2.44
3014 3385 3.071892 CCCGCCACTAATATACTCCCAAA 59.928 47.826 0.00 0.00 0.00 3.28
3015 3386 2.635915 CCCGCCACTAATATACTCCCAA 59.364 50.000 0.00 0.00 0.00 4.12
3016 3387 2.253610 CCCGCCACTAATATACTCCCA 58.746 52.381 0.00 0.00 0.00 4.37
3017 3388 1.066358 GCCCGCCACTAATATACTCCC 60.066 57.143 0.00 0.00 0.00 4.30
3018 3389 1.621814 TGCCCGCCACTAATATACTCC 59.378 52.381 0.00 0.00 0.00 3.85
3019 3390 3.064931 GTTGCCCGCCACTAATATACTC 58.935 50.000 0.00 0.00 0.00 2.59
3020 3391 2.704065 AGTTGCCCGCCACTAATATACT 59.296 45.455 0.00 0.00 0.00 2.12
3021 3392 3.121738 AGTTGCCCGCCACTAATATAC 57.878 47.619 0.00 0.00 0.00 1.47
3022 3393 3.007182 GGTAGTTGCCCGCCACTAATATA 59.993 47.826 2.48 0.00 0.00 0.86
3023 3394 2.224450 GGTAGTTGCCCGCCACTAATAT 60.224 50.000 2.48 0.00 0.00 1.28
3027 3398 2.662070 GGGTAGTTGCCCGCCACTA 61.662 63.158 0.00 0.00 39.17 2.74
3046 3417 0.817634 TTGCGACAGTGGTTTCAGGG 60.818 55.000 0.00 0.00 0.00 4.45
3053 3424 1.618837 ACTCTACATTGCGACAGTGGT 59.381 47.619 0.00 0.00 0.00 4.16
3057 3428 3.175152 GTCTGACTCTACATTGCGACAG 58.825 50.000 0.00 0.00 0.00 3.51
3065 3436 1.765314 GGCCATGGTCTGACTCTACAT 59.235 52.381 14.67 0.00 0.00 2.29
3136 3507 1.100510 CACAACCTGATCCATGGCAG 58.899 55.000 6.96 9.68 0.00 4.85
3196 3567 4.702131 AGTGAAAATACCTGATGGTTGCTC 59.298 41.667 0.00 0.00 46.05 4.26
3259 3630 5.842339 ACCCCTGAATGGAAATTGATAACT 58.158 37.500 0.00 0.00 38.35 2.24
3317 3689 5.109903 GCCGTTGTACTGATGAGTTTAGAT 58.890 41.667 0.00 0.00 33.21 1.98
3339 3711 1.001633 TCCACCCTAACTCAAGTTCGC 59.998 52.381 0.00 0.00 39.31 4.70
3429 3801 2.181777 CTAGTTGAGAGGCGCGCA 59.818 61.111 34.42 9.10 0.00 6.09
3430 3802 2.583593 CCTAGTTGAGAGGCGCGC 60.584 66.667 25.94 25.94 0.00 6.86
3507 3884 1.744320 GCTTCCCGCAACAAAAGGGT 61.744 55.000 0.00 0.00 45.27 4.34
3525 3902 4.735132 TGCCACCGCGACACTAGC 62.735 66.667 8.23 1.73 38.08 3.42
3580 3957 2.544267 GCCACGTAGAATGCATAAGGAC 59.456 50.000 0.00 0.00 0.00 3.85
3581 3958 2.434336 AGCCACGTAGAATGCATAAGGA 59.566 45.455 0.00 0.00 0.00 3.36
3582 3959 2.838736 AGCCACGTAGAATGCATAAGG 58.161 47.619 0.00 0.00 0.00 2.69
3583 3960 4.094887 ACAAAGCCACGTAGAATGCATAAG 59.905 41.667 0.00 0.00 0.00 1.73
3649 4028 1.977188 TAGTGACAGACAACGCATCG 58.023 50.000 0.00 0.00 0.00 3.84
3675 4054 4.136796 TGCTAAACTTTCAGCTGACATGT 58.863 39.130 18.03 12.49 38.63 3.21
3683 4062 7.930513 AAACAGTTTATGCTAAACTTTCAGC 57.069 32.000 14.69 0.00 38.32 4.26
3726 4105 8.203485 CACTGCTTTCTTCTTCTATAGATTCCT 58.797 37.037 2.58 0.00 31.54 3.36
3727 4106 7.984617 ACACTGCTTTCTTCTTCTATAGATTCC 59.015 37.037 2.58 0.00 31.54 3.01
3731 4110 6.127310 GGGACACTGCTTTCTTCTTCTATAGA 60.127 42.308 0.00 0.00 0.00 1.98
3732 4111 6.045955 GGGACACTGCTTTCTTCTTCTATAG 58.954 44.000 0.00 0.00 0.00 1.31
3892 4286 2.241176 TGGGGTGGTATCAGGAATGTTC 59.759 50.000 0.00 0.00 0.00 3.18
3893 4287 2.283834 TGGGGTGGTATCAGGAATGTT 58.716 47.619 0.00 0.00 0.00 2.71
3895 4289 3.600448 ATTGGGGTGGTATCAGGAATG 57.400 47.619 0.00 0.00 0.00 2.67
3896 4290 3.657727 CCTATTGGGGTGGTATCAGGAAT 59.342 47.826 0.00 0.00 0.00 3.01
3897 4291 3.053077 CCTATTGGGGTGGTATCAGGAA 58.947 50.000 0.00 0.00 0.00 3.36
3899 4293 2.418669 ACCTATTGGGGTGGTATCAGG 58.581 52.381 0.00 0.00 38.30 3.86
3942 4350 4.583907 TGTGCTCATGAAACTTCAATTGGA 59.416 37.500 5.42 0.00 41.13 3.53
3945 4353 5.244402 TGGATGTGCTCATGAAACTTCAATT 59.756 36.000 18.30 0.00 41.13 2.32
3946 4354 4.768448 TGGATGTGCTCATGAAACTTCAAT 59.232 37.500 18.30 3.74 41.13 2.57
3949 4357 4.639310 AGATGGATGTGCTCATGAAACTTC 59.361 41.667 5.89 12.35 34.06 3.01
3983 4391 1.221021 GGGGATCGGTGACCTTCAC 59.779 63.158 0.00 0.00 46.23 3.18
4000 4408 0.252467 AGAACCTGTGAGGAGAGGGG 60.252 60.000 0.00 0.00 37.67 4.79
4081 4492 4.096003 GCTTAGGCCAGGGCGACA 62.096 66.667 5.01 0.00 43.06 4.35
4102 4513 4.806247 GCATACAGGTCACATGTCTTACTC 59.194 45.833 0.00 0.00 32.02 2.59
4109 4520 2.076100 CGTTGCATACAGGTCACATGT 58.924 47.619 0.00 0.00 34.62 3.21
4167 4578 0.183492 AGGAAGAAGCAGTTGTGGCA 59.817 50.000 0.00 0.00 0.00 4.92
4203 4665 4.351938 CGAAGGTGGGCACGTCGA 62.352 66.667 0.00 0.00 40.02 4.20
4239 4704 3.302365 ACTTATTGGTGTTGCACATGC 57.698 42.857 0.00 0.00 42.50 4.06
4250 4715 5.460646 CATTTCAGCGAACAACTTATTGGT 58.539 37.500 0.00 0.00 38.95 3.67
4266 4731 5.712152 AAAGTACCTTTCCTGCATTTCAG 57.288 39.130 0.00 0.00 42.49 3.02
4354 4828 2.543653 GCAAATGTGAACCAAACGAGCT 60.544 45.455 0.00 0.00 0.00 4.09
4364 4838 6.943981 TCGCTACATAATAGCAAATGTGAAC 58.056 36.000 6.73 0.00 40.39 3.18
4369 4843 8.445493 TGATTGATCGCTACATAATAGCAAATG 58.555 33.333 6.73 0.00 40.39 2.32
4436 4923 0.109532 TTCACATTCCCACTTCGGCA 59.890 50.000 0.00 0.00 0.00 5.69
4441 4928 3.495434 TTACCGTTCACATTCCCACTT 57.505 42.857 0.00 0.00 0.00 3.16
4495 4982 6.418819 GCAACATATGATTCACCTAAACATGC 59.581 38.462 10.38 0.00 33.16 4.06
4497 4984 7.643569 TGCAACATATGATTCACCTAAACAT 57.356 32.000 10.38 0.00 35.09 2.71
4539 5026 7.961325 AAACATAACAAATGGTCCAAATGAC 57.039 32.000 12.81 0.00 43.67 3.06
4572 5059 5.705609 AACGTAGCAAATCCTTGAAATGT 57.294 34.783 0.00 0.00 34.14 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.